Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69097.t1 | XP_003603680.1 | 92.7 | 441 | 31 | 1 | 1 | 440 | 1 | 441 | 2.90E-226 | 794.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69097.t1 | Q9SXC4 | 56.2 | 443 | 142 | 8 | 1 | 440 | 1 | 394 | 7.3e-133 | 475.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69097.t1 | Q50HW4 | 92.7 | 441 | 31 | 1 | 1 | 440 | 1 | 441 | 2.1e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene69097 | 0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene04915 | MS.gene69097 | 0.814067 | 1.86E-51 | -1.69E-46 |
| MS.gene049166 | MS.gene69097 | 0.80945 | 1.88E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene69097 | 0.816853 | 4.46E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene69097 | 0.815152 | 1.07E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene69097 | 0.828601 | 8.21E-55 | -1.69E-46 |
| MS.gene049674 | MS.gene69097 | 0.80631 | 8.76E-50 | -1.69E-46 |
| MS.gene049685 | MS.gene69097 | 0.83932 | 1.70E-57 | -1.69E-46 |
| MS.gene049887 | MS.gene69097 | 0.820956 | 5.22E-53 | -1.69E-46 |
| MS.gene04998 | MS.gene69097 | 0.801858 | 7.39E-49 | -1.69E-46 |
| MS.gene050084 | MS.gene69097 | 0.811115 | 8.23E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene69097 | 0.834135 | 3.57E-56 | -1.69E-46 |
| MS.gene050114 | MS.gene69097 | 0.817406 | 3.35E-52 | -1.69E-46 |
| MS.gene050317 | MS.gene69097 | 0.825668 | 4.14E-54 | -1.69E-46 |
| MS.gene050359 | MS.gene69097 | 0.845286 | 4.46E-59 | -1.69E-46 |
| MS.gene050384 | MS.gene69097 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene69097 | 0.824414 | 8.18E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene69097 | 0.82105 | 4.96E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene69097 | 0.831345 | 1.76E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene69097 | 0.842203 | 2.99E-58 | -1.69E-46 |
| MS.gene050689 | MS.gene69097 | 0.838534 | 2.72E-57 | -1.69E-46 |
| MS.gene050752 | MS.gene69097 | 0.822265 | 2.60E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene69097 | 0.887558 | 1.28E-72 | -1.69E-46 |
| MS.gene050931 | MS.gene69097 | 0.820294 | 7.40E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene69097 | 0.813294 | 2.75E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene69097 | 0.856021 | 4.26E-62 | -1.69E-46 |
| MS.gene051043 | MS.gene69097 | 0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene051102 | MS.gene69097 | 0.829841 | 4.11E-55 | -1.69E-46 |
| MS.gene051184 | MS.gene69097 | 0.81586 | 7.45E-52 | -1.69E-46 |
| MS.gene051233 | MS.gene69097 | 0.818994 | 1.47E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene69097 | 0.864252 | 1.39E-64 | -1.69E-46 |
| MS.gene051343 | MS.gene69097 | 0.850023 | 2.22E-60 | -1.69E-46 |
| MS.gene051381 | MS.gene69097 | 0.845485 | 3.94E-59 | -1.69E-46 |
| MS.gene051642 | MS.gene69097 | 0.842473 | 2.53E-58 | -1.69E-46 |
| MS.gene051676 | MS.gene69097 | 0.810406 | 1.17E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene69097 | 0.825454 | 4.65E-54 | -1.69E-46 |
| MS.gene051856 | MS.gene69097 | 0.803938 | 2.75E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene69097 | 0.830705 | 2.53E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene69097 | 0.815425 | 9.30E-52 | -1.69E-46 |
| MS.gene052242 | MS.gene69097 | -0.828225 | 1.01E-54 | -1.69E-46 |
| MS.gene052296 | MS.gene69097 | 0.822917 | 1.83E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene69097 | 0.86279 | 3.95E-64 | -1.69E-46 |
| MS.gene052335 | MS.gene69097 | 0.839744 | 1.32E-57 | -1.69E-46 |
| MS.gene052342 | MS.gene69097 | 0.85283 | 3.57E-61 | -1.69E-46 |
| MS.gene052397 | MS.gene69097 | 0.822072 | 2.88E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene69097 | 0.842768 | 2.11E-58 | -1.69E-46 |
| MS.gene052463 | MS.gene69097 | 0.80404 | 2.61E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene69097 | 0.86184 | 7.73E-64 | -1.69E-46 |
| MS.gene052932 | MS.gene69097 | 0.84183 | 3.75E-58 | -1.69E-46 |
| MS.gene053058 | MS.gene69097 | 0.854687 | 1.04E-61 | -1.69E-46 |
| MS.gene053079 | MS.gene69097 | 0.808308 | 3.30E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene69097 | 0.852366 | 4.84E-61 | -1.69E-46 |
| MS.gene053167 | MS.gene69097 | 0.841773 | 3.88E-58 | -1.69E-46 |
| MS.gene053381 | MS.gene69097 | 0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene69097 | 0.829302 | 5.56E-55 | -1.69E-46 |
| MS.gene053786 | MS.gene69097 | 0.822512 | 2.28E-53 | -1.69E-46 |
| MS.gene054403 | MS.gene69097 | 0.815841 | 7.52E-52 | -1.69E-46 |
| MS.gene054558 | MS.gene69097 | 0.811139 | 8.13E-51 | -1.69E-46 |
| MS.gene054823 | MS.gene69097 | 0.817352 | 3.45E-52 | -1.69E-46 |
| MS.gene054824 | MS.gene69097 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene69097 | 0.845655 | 3.55E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene69097 | 0.823047 | 1.71E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene69097 | 0.835305 | 1.81E-56 | -1.69E-46 |
| MS.gene055469 | MS.gene69097 | 0.82046 | 6.78E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene69097 | 0.844788 | 6.08E-59 | -1.69E-46 |
| MS.gene055864 | MS.gene69097 | 0.802299 | 5.99E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene69097 | 0.826055 | 3.35E-54 | -1.69E-46 |
| MS.gene056097 | MS.gene69097 | 0.854601 | 1.10E-61 | -1.69E-46 |
| MS.gene056181 | MS.gene69097 | 0.881999 | 1.50E-70 | -1.69E-46 |
| MS.gene056308 | MS.gene69097 | 0.807488 | 4.93E-50 | -1.69E-46 |
| MS.gene056390 | MS.gene69097 | 0.817469 | 3.25E-52 | -1.69E-46 |
| MS.gene056578 | MS.gene69097 | 0.82248 | 2.32E-53 | -1.69E-46 |
| MS.gene056752 | MS.gene69097 | 0.83114 | 1.98E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene69097 | 0.824481 | 7.89E-54 | -1.69E-46 |
| MS.gene056881 | MS.gene69097 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene056992 | MS.gene69097 | 0.816263 | 6.05E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene69097 | 0.804821 | 1.80E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene69097 | 0.805705 | 1.17E-49 | -1.69E-46 |
| MS.gene057452 | MS.gene69097 | -0.804454 | 2.14E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene69097 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene69097 | 0.825153 | 5.47E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene69097 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene058261 | MS.gene69097 | 0.818437 | 1.96E-52 | -1.69E-46 |
| MS.gene058278 | MS.gene69097 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene69097 | 0.804482 | 2.12E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene69097 | 0.846549 | 2.03E-59 | -1.69E-46 |
| MS.gene058639 | MS.gene69097 | 0.856958 | 2.26E-62 | -1.69E-46 |
| MS.gene058646 | MS.gene69097 | 0.832894 | 7.28E-56 | -1.69E-46 |
| MS.gene058654 | MS.gene69097 | 0.836725 | 7.91E-57 | -1.69E-46 |
| MS.gene058758 | MS.gene69097 | 0.849743 | 2.66E-60 | -1.69E-46 |
| MS.gene059007 | MS.gene69097 | 0.838234 | 3.25E-57 | -1.69E-46 |
| MS.gene059146 | MS.gene69097 | 0.808853 | 2.52E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene69097 | 0.822248 | 2.62E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene69097 | 0.849306 | 3.52E-60 | -1.69E-46 |
| MS.gene059227 | MS.gene69097 | 0.806416 | 8.31E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene69097 | 0.80865 | 2.79E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene69097 | 0.819878 | 9.22E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene69097 | 0.810123 | 1.35E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene69097 | 0.802486 | 5.48E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene69097 | 0.813228 | 2.85E-51 | -1.69E-46 |
| MS.gene060343 | MS.gene69097 | -0.811413 | 7.09E-51 | -1.69E-46 |
| MS.gene060400 | MS.gene69097 | 0.80888 | 2.49E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene69097 | 0.856369 | 3.37E-62 | -1.69E-46 |
| MS.gene060763 | MS.gene69097 | 0.804024 | 2.63E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene69097 | 0.806789 | 6.93E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene69097 | 0.810921 | 9.06E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene69097 | 0.802416 | 5.67E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene69097 | 0.863048 | 3.29E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene69097 | 0.845419 | 4.11E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69097.t1 | MTR_3g111060 | 96.599 | 441 | 14 | 1 | 1 | 440 | 1 | 441 | 0.0 | 889 |
| MS.gene69097.t1 | MTR_3g110142 | 41.593 | 452 | 228 | 9 | 1 | 436 | 1 | 432 | 1.72e-111 | 335 |
| MS.gene69097.t1 | MTR_3g110142 | 41.562 | 397 | 196 | 9 | 1 | 381 | 1 | 377 | 4.02e-93 | 286 |
| MS.gene69097.t1 | MTR_5g016600 | 28.041 | 296 | 162 | 9 | 187 | 440 | 151 | 437 | 1.73e-24 | 106 |
| MS.gene69097.t1 | MTR_4g094912 | 27.848 | 316 | 179 | 9 | 167 | 440 | 130 | 438 | 1.50e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69097.t1 | AT1G27600 | 56.433 | 443 | 141 | 8 | 1 | 440 | 1 | 394 | 5.78e-172 | 488 |
| MS.gene69097.t1 | AT1G27600 | 56.433 | 443 | 141 | 8 | 1 | 440 | 1 | 394 | 5.78e-172 | 488 |
| MS.gene69097.t1 | AT2G37090 | 35.638 | 376 | 186 | 12 | 57 | 414 | 4 | 341 | 1.05e-70 | 227 |
| MS.gene69097.t1 | AT5G67230 | 30.479 | 292 | 163 | 9 | 187 | 440 | 152 | 441 | 1.21e-29 | 120 |
| MS.gene69097.t1 | AT4G36890 | 28.754 | 313 | 171 | 10 | 171 | 440 | 148 | 451 | 1.11e-26 | 112 |
Find 94 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAAGAACAAGGCTATTT+TGG | 0.178767 | 3.4:+96108859 | MS.gene69097:CDS |
| TTCCACCAATTGTTCAATAA+AGG | 0.288276 | 3.4:-96109166 | None:intergenic |
| GGAAATGAATTCTGCTTCTA+TGG | 0.295993 | 3.4:+96107210 | MS.gene69097:CDS |
| GCGATTATTGAGAATTGATT+TGG | 0.304122 | 3.4:-96106894 | None:intergenic |
| AGATTTCATGTTGATATGTC+TGG | 0.307522 | 3.4:+96108950 | MS.gene69097:CDS |
| ACTGAGTCTAATTGCCGTAT+AGG | 0.330564 | 3.4:-96109034 | None:intergenic |
| GTAGGGCGCCGCCACCGCTT+TGG | 0.351660 | 3.4:-96109004 | None:intergenic |
| TGCGTTCTCTGTTTCTTCGT+TGG | 0.355661 | 3.4:+96106755 | MS.gene69097:CDS |
| GACCACCTTTATTGAACAAT+TGG | 0.367701 | 3.4:+96109161 | MS.gene69097:CDS |
| TTCTCAAGCATCCAACCCTT+TGG | 0.387858 | 3.4:-96109276 | None:intergenic |
| GCGTTCTCTGTTTCTTCGTT+GGG | 0.390433 | 3.4:+96106756 | MS.gene69097:CDS |
| ATTGAACATCATAAACTTGA+TGG | 0.398247 | 3.4:+96107349 | MS.gene69097:CDS |
| GCCCTACTTCAAATCCTATA+CGG | 0.399233 | 3.4:+96109020 | MS.gene69097:CDS |
| TCGTCGTTTCAGAGATTAAT+CGG | 0.401703 | 3.4:+96106674 | MS.gene69097:CDS |
| TTCAGACAATCAGAGATATC+AGG | 0.403188 | 3.4:+96107419 | MS.gene69097:CDS |
| AAAATAGCCTTGTTCTTGCT+TGG | 0.406483 | 3.4:-96108857 | None:intergenic |
| TTATTAGGTATGTTCCCTTT+CGG | 0.411490 | 3.4:+96106782 | MS.gene69097:CDS |
| CACGTCAGCGTCGGTGGTGG+TGG | 0.416469 | 3.4:+96106929 | MS.gene69097:CDS |
| GGATAAGGATAAGAAGAGTA+AGG | 0.423109 | 3.4:+96106961 | MS.gene69097:CDS |
| GTTGCAAGAAAATAATGAAT+TGG | 0.437417 | 3.4:+96109220 | MS.gene69097:CDS |
| CACGACCGTCACTACATAAA+CGG | 0.444334 | 3.4:+96106575 | MS.gene69097:CDS |
| AATGGCGAAAAGTTGCTTTC+AGG | 0.453308 | 3.4:+96106732 | MS.gene69097:CDS |
| CACAAACTTCCATCTTCAAA+CGG | 0.454365 | 3.4:+96106632 | MS.gene69097:CDS |
| TCAACGGATGTGAAGGATAG+AGG | 0.473437 | 3.4:+96107295 | MS.gene69097:CDS |
| CATAATATAGTTTATCCAAA+GGG | 0.474680 | 3.4:+96109261 | MS.gene69097:CDS |
| CACTTGGCTTCCATTGCATA+CGG | 0.478925 | 3.4:-96108888 | None:intergenic |
| GAGTAGTTTCCGTTTGAAGA+TGG | 0.479126 | 3.4:-96106641 | None:intergenic |
| GATTTCATGTTGATATGTCT+GGG | 0.481532 | 3.4:+96108951 | MS.gene69097:CDS |
| TGTGGGATCCAAAGCGGTGG+CGG | 0.482823 | 3.4:+96108996 | MS.gene69097:CDS |
| AGATGGAGACGACGGTGAAA+AGG | 0.484318 | 3.4:-96106609 | None:intergenic |
| CACCTTTATTGAACAATTGG+TGG | 0.486008 | 3.4:+96109164 | MS.gene69097:CDS |
| TGACGTGGATGACAGCATCT+AGG | 0.490726 | 3.4:-96109302 | None:intergenic |
| TGGTGGTGATGATGAGGATA+AGG | 0.495077 | 3.4:+96106946 | MS.gene69097:CDS |
| CTTGGTGCAAGCATGGCGAC+AGG | 0.495355 | 3.4:-96108839 | None:intergenic |
| GCCGTATAGGATTTGAAGTA+GGG | 0.501903 | 3.4:-96109021 | None:intergenic |
| ATAATGAAAAGCTGAAAGAG+AGG | 0.501926 | 3.4:+96107035 | MS.gene69097:CDS |
| CATGAATGAGATTACCGAAA+GGG | 0.506123 | 3.4:-96106796 | None:intergenic |
| TAGTGACGGTCGTGATATGC+CGG | 0.506800 | 3.4:-96106566 | None:intergenic |
| ATTCCGACGGACGTTATCTC+CGG | 0.516727 | 3.4:+96106547 | MS.gene69097:CDS |
| GAAGATGGAAGTTTGTGAGA+TGG | 0.518700 | 3.4:-96106626 | None:intergenic |
| GTTCTTGCTTGGTGCAAGCA+TGG | 0.519522 | 3.4:-96108846 | None:intergenic |
| TGCCGTATAGGATTTGAAGT+AGG | 0.523006 | 3.4:-96109022 | None:intergenic |
| TTGAACATCATAAACTTGAT+GGG | 0.527171 | 3.4:+96107350 | MS.gene69097:CDS |
| AAGCACGTCAGCGTCGGTGG+TGG | 0.531902 | 3.4:+96106926 | MS.gene69097:CDS |
| GGGTGTGATGTATAGGCATT+TGG | 0.535560 | 3.4:+96107258 | MS.gene69097:CDS |
| GCAATTAGACTCAGTGAAAG+AGG | 0.535687 | 3.4:+96109042 | MS.gene69097:CDS |
| ATATAGTTTATCCAAAGGGT+TGG | 0.536359 | 3.4:+96109265 | MS.gene69097:CDS |
| ATTGATTTGGCATCAGATTG+TGG | 0.537571 | 3.4:-96106881 | None:intergenic |
| GATAAGGATAAGAAGAGTAA+GGG | 0.537759 | 3.4:+96106962 | MS.gene69097:CDS |
| TTGTATGCCACCCAAGCACT+TGG | 0.538534 | 3.4:-96108904 | None:intergenic |
| GGTGGAAGATGAGAGTCAAA+TGG | 0.541257 | 3.4:+96109182 | MS.gene69097:CDS |
| ATCTGAGAAAATTGATATTG+TGG | 0.542030 | 3.4:+96107069 | MS.gene69097:CDS |
| TCAAATGGAAGGTTCGCCAC+CGG | 0.544013 | 3.4:+96109197 | MS.gene69097:CDS |
| TGCAATGGAAGCCAAGTGCT+TGG | 0.550149 | 3.4:+96108893 | MS.gene69097:CDS |
| CACCAATTGTTCAATAAAGG+TGG | 0.551699 | 3.4:-96109163 | None:intergenic |
| CAAATGGAAGGTTCGCCACC+GGG | 0.554822 | 3.4:+96109198 | MS.gene69097:CDS |
| GCAATGGAAGCCAAGTGCTT+GGG | 0.557871 | 3.4:+96108894 | MS.gene69097:CDS |
| TAATGAAAAGCTGAAAGAGA+GGG | 0.563255 | 3.4:+96107036 | MS.gene69097:CDS |
| TAAGAATTCAACGGATGTGA+AGG | 0.565155 | 3.4:+96107288 | MS.gene69097:CDS |
| TTGGAGGGTCCCGTATGCAA+TGG | 0.566859 | 3.4:+96108878 | MS.gene69097:CDS |
| TCATCAGAGGAATAAAGCAT+TGG | 0.572046 | 3.4:+96107321 | MS.gene69097:CDS |
| ACCACCCATAAAAGCGGCGG+CGG | 0.572761 | 3.4:-96107184 | None:intergenic |
| TGAAAAGCGCGGTTATAAGT+CGG | 0.578372 | 3.4:-96107118 | None:intergenic |
| ATGCGACGATACAATCGAAA+GGG | 0.578550 | 3.4:+96106707 | MS.gene69097:CDS |
| AATTAATGGCGTCATTCCGA+CGG | 0.581992 | 3.4:+96106534 | None:intergenic |
| ACTTGGCTTCCATTGCATAC+GGG | 0.582150 | 3.4:-96108887 | None:intergenic |
| CATTCAACAGCACAATCCTG+TGG | 0.583078 | 3.4:+96108978 | MS.gene69097:CDS |
| CTCAAACATGAACGCTGAGA+AGG | 0.583981 | 3.4:+96107012 | MS.gene69097:CDS |
| TCATAATATAGTTTATCCAA+AGG | 0.585209 | 3.4:+96109260 | MS.gene69097:CDS |
| GATACAATCGAAAGGGACAA+TGG | 0.588516 | 3.4:+96106714 | MS.gene69097:CDS |
| CGGTGGTGGTGGTGATGATG+AGG | 0.599517 | 3.4:+96106940 | MS.gene69097:CDS |
| CAATTAGACTCAGTGAAAGA+GGG | 0.602242 | 3.4:+96109043 | MS.gene69097:CDS |
| GCTTGCACCAAGCAAGAACA+AGG | 0.606742 | 3.4:+96108850 | MS.gene69097:CDS |
| TCCTGTGGGATCCAAAGCGG+TGG | 0.608772 | 3.4:+96108993 | MS.gene69097:CDS |
| GCCACCGCTTTGGATCCCAC+AGG | 0.619308 | 3.4:-96108994 | None:intergenic |
| AGGATAGAGGAGTTCATCAG+AGG | 0.628437 | 3.4:+96107308 | MS.gene69097:CDS |
| CGTCACTACATAAACGGCGG+TGG | 0.628520 | 3.4:+96106581 | MS.gene69097:CDS |
| ATGGAAGCCAAGTGCTTGGG+TGG | 0.635295 | 3.4:+96108897 | MS.gene69097:CDS |
| TCCACCACCACCCATAAAAG+CGG | 0.639611 | 3.4:-96107190 | None:intergenic |
| TGGTGGAAGATTACTTGACG+TGG | 0.643604 | 3.4:-96109317 | None:intergenic |
| CATGCGACGATACAATCGAA+AGG | 0.645339 | 3.4:+96106706 | MS.gene69097:CDS |
| TGGAGACGACGGTGAAAAGG+CGG | 0.646294 | 3.4:-96106606 | None:intergenic |
| CACCGCCGTTTATGTAGTGA+CGG | 0.648586 | 3.4:-96106580 | None:intergenic |
| TCATGAATGAGATTACCGAA+AGG | 0.650007 | 3.4:-96106797 | None:intergenic |
| ATTCAACAGCACAATCCTGT+GGG | 0.650054 | 3.4:+96108979 | MS.gene69097:CDS |
| AGAAAATTGATATTGTGGCG+AGG | 0.651531 | 3.4:+96107074 | MS.gene69097:CDS |
| GAAGATGAGAGTCAAATGGA+AGG | 0.657273 | 3.4:+96109186 | MS.gene69097:CDS |
| ACCACCACCCATAAAAGCGG+CGG | 0.658671 | 3.4:-96107187 | None:intergenic |
| TCGTTTCAGAGATTAATCGG+TGG | 0.678331 | 3.4:+96106677 | MS.gene69097:CDS |
| GGTGTGTACTAAGAATTCAA+CGG | 0.679123 | 3.4:+96107279 | MS.gene69097:CDS |
| ATGCCGGAGATAACGTCCGT+CGG | 0.686418 | 3.4:-96106550 | None:intergenic |
| GACCGTCACTACATAAACGG+CGG | 0.698582 | 3.4:+96106578 | MS.gene69097:CDS |
| CAATCCTGTGGGATCCAAAG+CGG | 0.703864 | 3.4:+96108990 | MS.gene69097:CDS |
| AGTTTGTGAGATGGAGACGA+CGG | 0.778732 | 3.4:-96106617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTGAAAAATTCAAATT+TGG | - | chr3.4:96108557-96108576 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCTTAAATATCTT+TGG | + | chr3.4:96107747-96107766 | MS.gene69097:intron | 10.0% |
| !! | AAAAAAAAAAACAATCATCA+AGG | - | chr3.4:96107735-96107754 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACAATCATCAA+GGG | - | chr3.4:96107734-96107753 | None:intergenic | 15.0% |
| !! | AAATCAAAACAATACAAATT+AGG | - | chr3.4:96108065-96108084 | None:intergenic | 15.0% |
| !! | AACTTTAAGTATAAATTCAA+AGG | - | chr3.4:96107507-96107526 | None:intergenic | 15.0% |
| !! | AATAATAATCCTAAAAAAGT+AGG | - | chr3.4:96107476-96107495 | None:intergenic | 15.0% |
| !! | ATAAAATTCATACAAAGAAA+CGG | - | chr3.4:96107779-96107798 | None:intergenic | 15.0% |
| !! | ATTAAATAAATTTGTGTGTT+TGG | + | chr3.4:96108587-96108606 | MS.gene69097:intron | 15.0% |
| !!! | ACTTTTTTAGGATTATTATT+CGG | + | chr3.4:96107476-96107495 | MS.gene69097:intron | 15.0% |
| !!! | ATTTTCCTTTTTTAATGAAA+TGG | + | chr3.4:96108528-96108547 | MS.gene69097:intron | 15.0% |
| !!! | TCTTTGTATGAATTTTATAA+CGG | + | chr3.4:96107781-96107800 | MS.gene69097:intron | 15.0% |
| !! | AATCAATACATAACAATCAA+AGG | - | chr3.4:96108506-96108525 | None:intergenic | 20.0% |
| !! | CATAATATAGTTTATCCAAA+GGG | + | chr3.4:96109261-96109280 | MS.gene69097:CDS | 20.0% |
| !! | GTGTAAATAAAAGTAATGAT+AGG | - | chr3.4:96109084-96109103 | None:intergenic | 20.0% |
| !! | TAAATAAAAGTAATGATAGG+AGG | - | chr3.4:96109081-96109100 | None:intergenic | 20.0% |
| !! | TCATAATATAGTTTATCCAA+AGG | + | chr3.4:96109260-96109279 | MS.gene69097:CDS | 20.0% |
| !!! | CATATTTTTTGAATAGGTTA+GGG | + | chr3.4:96107143-96107162 | MS.gene69097:CDS | 20.0% |
| !!! | CTTTGTATGAATTTTATAAC+GGG | + | chr3.4:96107782-96107801 | MS.gene69097:intron | 20.0% |
| !!! | TAAAGTTATATTGCTTGTTT+TGG | + | chr3.4:96107520-96107539 | MS.gene69097:intron | 20.0% |
| !!! | TCATATTTTTTGAATAGGTT+AGG | + | chr3.4:96107142-96107161 | MS.gene69097:CDS | 20.0% |
| !!! | TTCAGTCATATTTTTTGAAT+AGG | + | chr3.4:96107137-96107156 | MS.gene69097:CDS | 20.0% |
| ! | AAAACATGCTAATGTAACAA+AGG | - | chr3.4:96108167-96108186 | None:intergenic | 25.0% |
| ! | ATCTGAGAAAATTGATATTG+TGG | + | chr3.4:96107069-96107088 | MS.gene69097:CDS | 25.0% |
| ! | ATTGAACATCATAAACTTGA+TGG | + | chr3.4:96107349-96107368 | MS.gene69097:CDS | 25.0% |
| ! | CAGGAAATAAAGTGAAAATA+CGG | + | chr3.4:96108244-96108263 | MS.gene69097:intron | 25.0% |
| ! | CTCCTACACTTAATTAAAAA+GGG | - | chr3.4:96108350-96108369 | None:intergenic | 25.0% |
| ! | GGATTCCATTTCATTAAAAA+AGG | - | chr3.4:96108536-96108555 | None:intergenic | 25.0% |
| ! | GGTGAAAACAAGATTTATAA+AGG | - | chr3.4:96108200-96108219 | None:intergenic | 25.0% |
| ! | GTTGCAAGAAAATAATGAAT+TGG | + | chr3.4:96109220-96109239 | MS.gene69097:CDS | 25.0% |
| ! | TTGAACATCATAAACTTGAT+GGG | + | chr3.4:96107350-96107369 | MS.gene69097:CDS | 25.0% |
| !! | ATAATACCTTTAACTTTGAC+AGG | + | chr3.4:96109137-96109156 | MS.gene69097:intron | 25.0% |
| !!! | TGTGTTATACCTACTTTTTT+AGG | + | chr3.4:96107464-96107483 | MS.gene69097:intron | 25.0% |
| !!! | TTCCCTTTTTAATTAAGTGT+AGG | + | chr3.4:96108345-96108364 | MS.gene69097:intron | 25.0% |
| AAAAAAACAATCATCAAGGG+AGG | - | chr3.4:96107731-96107750 | None:intergenic | 30.0% | |
| AAAAAACAATCATCAAGGGA+GGG | - | chr3.4:96107730-96107749 | None:intergenic | 30.0% | |
| AAAAACACAATTGCCAAAGA+TGG | - | chr3.4:96108483-96108502 | None:intergenic | 30.0% | |
| AAAAATATGACTGAAAAGCG+CGG | - | chr3.4:96107132-96107151 | None:intergenic | 30.0% | |
| AAAAGTAGGTATAACACAAC+AGG | - | chr3.4:96107462-96107481 | None:intergenic | 30.0% | |
| AAGTTAAATGATGTACACAG+AGG | - | chr3.4:96108711-96108730 | None:intergenic | 30.0% | |
| AGATTTCATGTTGATATGTC+TGG | + | chr3.4:96108950-96108969 | MS.gene69097:CDS | 30.0% | |
| AGTTATGAAGGTGACATTTA+CGG | - | chr3.4:96107922-96107941 | None:intergenic | 30.0% | |
| ATAATGAAAAGCTGAAAGAG+AGG | + | chr3.4:96107035-96107054 | MS.gene69097:CDS | 30.0% | |
| ATATAGTTTATCCAAAGGGT+TGG | + | chr3.4:96109265-96109284 | MS.gene69097:CDS | 30.0% | |
| CAGTTCAACATTAGAACATA+GGG | - | chr3.4:96108794-96108813 | None:intergenic | 30.0% | |
| CCTCCTACACTTAATTAAAA+AGG | - | chr3.4:96108351-96108370 | None:intergenic | 30.0% | |
| CTTCATAAATTCTCGAAAAC+AGG | + | chr3.4:96108225-96108244 | MS.gene69097:intron | 30.0% | |
| GATAAGGATAAGAAGAGTAA+GGG | + | chr3.4:96106962-96106981 | MS.gene69097:CDS | 30.0% | |
| GATTTCATGTTGATATGTCT+GGG | + | chr3.4:96108951-96108970 | MS.gene69097:CDS | 30.0% | |
| GCGATTATTGAGAATTGATT+TGG | - | chr3.4:96106897-96106916 | None:intergenic | 30.0% | |
| TAATGAAAAGCTGAAAGAGA+GGG | + | chr3.4:96107036-96107055 | MS.gene69097:CDS | 30.0% | |
| TATCAGATAATACGAATTGC+AGG | - | chr3.4:96109120-96109139 | None:intergenic | 30.0% | |
| TCGAGAATTTATGAAGGAAA+AGG | - | chr3.4:96108221-96108240 | None:intergenic | 30.0% | |
| TGCTGAATTGTTGAGAAAAA+CGG | + | chr3.4:96107237-96107256 | MS.gene69097:CDS | 30.0% | |
| TTATTAGGTATGTTCCCTTT+CGG | + | chr3.4:96106782-96106801 | MS.gene69097:CDS | 30.0% | |
| TTCCACCAATTGTTCAATAA+AGG | - | chr3.4:96109169-96109188 | None:intergenic | 30.0% | |
| TTGGATGACACAATTCATAA+AGG | - | chr3.4:96108751-96108770 | None:intergenic | 30.0% | |
| TTTAATTAAGTGTAGGAGGA+AGG | + | chr3.4:96108352-96108371 | MS.gene69097:intron | 30.0% | |
| ! | TTCATTATTTTCTTGCAACC+CGG | - | chr3.4:96109219-96109238 | None:intergenic | 30.0% |
| ! | TTCTTCGTTGGGTTTTTATT+AGG | + | chr3.4:96106767-96106786 | MS.gene69097:CDS | 30.0% |
| !! | CCTTTTTAATTAAGTGTAGG+AGG | + | chr3.4:96108348-96108367 | MS.gene69097:intron | 30.0% |
| !! | CTGTTTTCGAGAATTTATGA+AGG | - | chr3.4:96108227-96108246 | None:intergenic | 30.0% |
| !! | TGTATGAATTTTATAACGGG+CGG | + | chr3.4:96107785-96107804 | MS.gene69097:intron | 30.0% |
| !!! | AACTGGTTTTATAGTCGTTT+TGG | + | chr3.4:96108809-96108828 | MS.gene69097:intron | 30.0% |
| !!! | ACTTTTTTCCCTTCCATTTT+CGG | - | chr3.4:96108317-96108336 | None:intergenic | 30.0% |
| !!! | AGTTATATTGCTTGTTTTGG+AGG | + | chr3.4:96107523-96107542 | MS.gene69097:intron | 30.0% |
| !!! | TAAATTTGCGCCTTGTTTTT+GGG | + | chr3.4:96108100-96108119 | MS.gene69097:intron | 30.0% |
| AAATGATGTACACAGAGGAT+GGG | - | chr3.4:96108706-96108725 | None:intergenic | 35.0% | |
| AATACGAATTGCAGGTGATA+TGG | - | chr3.4:96109112-96109131 | None:intergenic | 35.0% | |
| ACCAAAAGCCAACAAACAAA+AGG | - | chr3.4:96107583-96107602 | None:intergenic | 35.0% | |
| AGAAAATTGATATTGTGGCG+AGG | + | chr3.4:96107074-96107093 | MS.gene69097:CDS | 35.0% | |
| ATACGAATTGCAGGTGATAT+GGG | - | chr3.4:96109111-96109130 | None:intergenic | 35.0% | |
| CAACATTAGAACATAGGGTT+AGG | - | chr3.4:96108789-96108808 | None:intergenic | 35.0% | |
| CAATTAGACTCAGTGAAAGA+GGG | + | chr3.4:96109043-96109062 | MS.gene69097:CDS | 35.0% | |
| CACAAACTTCCATCTTCAAA+CGG | + | chr3.4:96106632-96106651 | MS.gene69097:CDS | 35.0% | |
| CACCAATTGTTCAATAAAGG+TGG | - | chr3.4:96109166-96109185 | None:intergenic | 35.0% | |
| CACCTTTATTGAACAATTGG+TGG | + | chr3.4:96109164-96109183 | MS.gene69097:CDS | 35.0% | |
| CATGAATGAGATTACCGAAA+GGG | - | chr3.4:96106799-96106818 | None:intergenic | 35.0% | |
| CCAGTTCAACATTAGAACAT+AGG | - | chr3.4:96108795-96108814 | None:intergenic | 35.0% | |
| CCTATGTTCTAATGTTGAAC+TGG | + | chr3.4:96108792-96108811 | MS.gene69097:intron | 35.0% | |
| CTTGTGAATACCCAAAAACA+AGG | - | chr3.4:96108113-96108132 | None:intergenic | 35.0% | |
| GACCACCTTTATTGAACAAT+TGG | + | chr3.4:96109161-96109180 | MS.gene69097:CDS | 35.0% | |
| GCTGAATTGTTGAGAAAAAC+GGG | + | chr3.4:96107238-96107257 | MS.gene69097:CDS | 35.0% | |
| GGAAATGAATTCTGCTTCTA+TGG | + | chr3.4:96107210-96107229 | MS.gene69097:CDS | 35.0% | |
| GGATAAGGATAAGAAGAGTA+AGG | + | chr3.4:96106961-96106980 | MS.gene69097:CDS | 35.0% | |
| GGTGTGTACTAAGAATTCAA+CGG | + | chr3.4:96107279-96107298 | MS.gene69097:CDS | 35.0% | |
| GTAGATACAACTCAGAAAAC+TGG | - | chr3.4:96108625-96108644 | None:intergenic | 35.0% | |
| TAAATGATGTACACAGAGGA+TGG | - | chr3.4:96108707-96108726 | None:intergenic | 35.0% | |
| TAAGAATTCAACGGATGTGA+AGG | + | chr3.4:96107288-96107307 | MS.gene69097:CDS | 35.0% | |
| TAGGAACTGAATGAACAAGT+TGG | - | chr3.4:96108770-96108789 | None:intergenic | 35.0% | |
| TCATCAGAGGAATAAAGCAT+TGG | + | chr3.4:96107321-96107340 | MS.gene69097:CDS | 35.0% | |
| TCATGAATGAGATTACCGAA+AGG | - | chr3.4:96106800-96106819 | None:intergenic | 35.0% | |
| TCGTCGTTTCAGAGATTAAT+CGG | + | chr3.4:96106674-96106693 | MS.gene69097:CDS | 35.0% | |
| TTCAGACAATCAGAGATATC+AGG | + | chr3.4:96107419-96107438 | MS.gene69097:CDS | 35.0% | |
| ! | AAGCAAGAACAAGGCTATTT+TGG | + | chr3.4:96108859-96108878 | MS.gene69097:CDS | 35.0% |
| ! | AATGACGTATTGACCGAAAA+TGG | + | chr3.4:96108301-96108320 | MS.gene69097:intron | 35.0% |
| ! | GTTTTCTGAGTTGTATCTAC+TGG | + | chr3.4:96108625-96108644 | MS.gene69097:intron | 35.0% |
| ! | TTGTTTTCACGATGTTGTTG+AGG | - | chr3.4:96106827-96106846 | None:intergenic | 35.0% |
| !! | AAAATAGCCTTGTTCTTGCT+TGG | - | chr3.4:96108860-96108879 | None:intergenic | 35.0% |
| !! | AAGAACAAGGCTATTTTGGA+GGG | + | chr3.4:96108863-96108882 | MS.gene69097:CDS | 35.0% |
| !! | ATCGTTTGCCTTTTGTTTGT+TGG | + | chr3.4:96107572-96107591 | MS.gene69097:intron | 35.0% |
| !! | ATTGATTTGGCATCAGATTG+TGG | - | chr3.4:96106884-96106903 | None:intergenic | 35.0% |
| !! | ATTTGGGAGTTTGGGTTTTT+GGG | + | chr3.4:96107698-96107717 | MS.gene69097:intron | 35.0% |
| !! | TTTATAGTCGTTTTGGCACT+TGG | + | chr3.4:96108816-96108835 | MS.gene69097:intron | 35.0% |
| !!! | CTAAATTTGCGCCTTGTTTT+TGG | + | chr3.4:96108099-96108118 | MS.gene69097:intron | 35.0% |
| !!! | GTATGAATTTTATAACGGGC+GGG | + | chr3.4:96107786-96107805 | MS.gene69097:intron | 35.0% |
| !!! | TATTGCTTGTTTTGGAGGTA+TGG | + | chr3.4:96107528-96107547 | MS.gene69097:intron | 35.0% |
| !!! | TTTTTTGAATAGGTTAGGGC+AGG | + | chr3.4:96107147-96107166 | MS.gene69097:CDS | 35.0% |
| AAGTTCGTGGGATTGTGATT+TGG | + | chr3.4:96107681-96107700 | MS.gene69097:intron | 40.0% | |
| ACACAATTGCCAAAGATGGT+TGG | - | chr3.4:96108479-96108498 | None:intergenic | 40.0% | |
| ACTGAGTCTAATTGCCGTAT+AGG | - | chr3.4:96109037-96109056 | None:intergenic | 40.0% | |
| AGTTCGTGGGATTGTGATTT+GGG | + | chr3.4:96107682-96107701 | MS.gene69097:intron | 40.0% | |
| ATGCGACGATACAATCGAAA+GGG | + | chr3.4:96106707-96106726 | MS.gene69097:CDS | 40.0% | |
| ATGTGTAGCATGTAAGTTCG+TGG | + | chr3.4:96107668-96107687 | MS.gene69097:intron | 40.0% | |
| ATTAAGTGTAGGAGGAAGGT+AGG | + | chr3.4:96108356-96108375 | MS.gene69097:intron | 40.0% | |
| ATTCAACAGCACAATCCTGT+GGG | + | chr3.4:96108979-96108998 | MS.gene69097:CDS | 40.0% | |
| CCGATACACTTGTAGTCTAA+CGG | + | chr3.4:96107811-96107830 | MS.gene69097:intron | 40.0% | |
| CCGTTAGACTACAAGTGTAT+CGG | - | chr3.4:96107814-96107833 | None:intergenic | 40.0% | |
| CTCAAGAACAACCAACTTGT+CGG | - | chr3.4:96107950-96107969 | None:intergenic | 40.0% | |
| GAAAAACGGGTGTGATGTAT+AGG | + | chr3.4:96107251-96107270 | MS.gene69097:CDS | 40.0% | |
| GAAGATGAGAGTCAAATGGA+AGG | + | chr3.4:96109186-96109205 | MS.gene69097:CDS | 40.0% | |
| GAAGATGGAAGTTTGTGAGA+TGG | - | chr3.4:96106629-96106648 | None:intergenic | 40.0% | |
| GAGTAGTTTCCGTTTGAAGA+TGG | - | chr3.4:96106644-96106663 | None:intergenic | 40.0% | |
| GATACAATCGAAAGGGACAA+TGG | + | chr3.4:96106714-96106733 | MS.gene69097:CDS | 40.0% | |
| GCAATTAGACTCAGTGAAAG+AGG | + | chr3.4:96109042-96109061 | MS.gene69097:CDS | 40.0% | |
| GCCCTACTTCAAATCCTATA+CGG | + | chr3.4:96109020-96109039 | MS.gene69097:CDS | 40.0% | |
| GCTTCAATGAAGGTTCATAG+TGG | + | chr3.4:96108412-96108431 | MS.gene69097:intron | 40.0% | |
| GGTTACAGTTATTGAGGCAT+TGG | + | chr3.4:96107873-96107892 | MS.gene69097:intron | 40.0% | |
| GTTAATGTGGCCGAAATTTG+CGG | + | chr3.4:96107974-96107993 | MS.gene69097:intron | 40.0% | |
| GTTCTTGAGAGGAGTTAATG+TGG | + | chr3.4:96107961-96107980 | MS.gene69097:intron | 40.0% | |
| TACACTTGTAGTCTAACGGT+TGG | + | chr3.4:96107815-96107834 | MS.gene69097:intron | 40.0% | |
| TACGAATTGCAGGTGATATG+GGG | - | chr3.4:96109110-96109129 | None:intergenic | 40.0% | |
| TCGTTTCAGAGATTAATCGG+TGG | + | chr3.4:96106677-96106696 | MS.gene69097:CDS | 40.0% | |
| TCTGCATTATCCAATGAGTC+TGG | + | chr3.4:96107849-96107868 | MS.gene69097:intron | 40.0% | |
| TGAACCTTCATTGAAGCATG+TGG | - | chr3.4:96108409-96108428 | None:intergenic | 40.0% | |
| TGGTCTCCTGTCAAAGTTAA+AGG | - | chr3.4:96109146-96109165 | None:intergenic | 40.0% | |
| TGTCTCAATGCAGTTGTAGT+TGG | + | chr3.4:96107619-96107638 | MS.gene69097:intron | 40.0% | |
| TGTGTAGCATGTAAGTTCGT+GGG | + | chr3.4:96107669-96107688 | MS.gene69097:intron | 40.0% | |
| TTGTCGGTAGCAAGTTATGA+AGG | - | chr3.4:96107934-96107953 | None:intergenic | 40.0% | |
| ! | AATGGCGAAAAGTTGCTTTC+AGG | + | chr3.4:96106732-96106751 | MS.gene69097:CDS | 40.0% |
| ! | ACGTATTGACCGAAAATGGA+AGG | + | chr3.4:96108305-96108324 | MS.gene69097:intron | 40.0% |
| ! | ATTATTTTCTTGCAACCCGG+TGG | - | chr3.4:96109216-96109235 | None:intergenic | 40.0% |
| ! | CGTATTGACCGAAAATGGAA+GGG | + | chr3.4:96108306-96108325 | MS.gene69097:intron | 40.0% |
| ! | GCCGTATAGGATTTGAAGTA+GGG | - | chr3.4:96109024-96109043 | None:intergenic | 40.0% |
| ! | GGATTGTGATTTGGGAGTTT+GGG | + | chr3.4:96107690-96107709 | MS.gene69097:intron | 40.0% |
| ! | TGAAAAGCGCGGTTATAAGT+CGG | - | chr3.4:96107121-96107140 | None:intergenic | 40.0% |
| ! | TGCCGTATAGGATTTGAAGT+AGG | - | chr3.4:96109025-96109044 | None:intergenic | 40.0% |
| !! | ACAAGTTGGTTGTTCTTGAG+AGG | + | chr3.4:96107950-96107969 | MS.gene69097:intron | 40.0% |
| !! | ATAACTTGCTACCGACAAGT+TGG | + | chr3.4:96107936-96107955 | MS.gene69097:intron | 40.0% |
| !! | CAAGAACAAGGCTATTTTGG+AGG | + | chr3.4:96108862-96108881 | MS.gene69097:CDS | 40.0% |
| !! | GATTTGGGAGTTTGGGTTTT+TGG | + | chr3.4:96107697-96107716 | MS.gene69097:intron | 40.0% |
| !! | TACAGTTATTGAGGCATTGG+TGG | + | chr3.4:96107876-96107895 | MS.gene69097:intron | 40.0% |
| !!! | AGTTGGTACTGTTGGCTTTT+AGG | + | chr3.4:96107636-96107655 | MS.gene69097:intron | 40.0% |
| !!! | GCCTTTTGTTTGTTGGCTTT+TGG | + | chr3.4:96107579-96107598 | MS.gene69097:intron | 40.0% |
| !!! | GTTGGTACTGTTGGCTTTTA+GGG | + | chr3.4:96107637-96107656 | MS.gene69097:intron | 40.0% |
| ACGAATTGCAGGTGATATGG+GGG | - | chr3.4:96109109-96109128 | None:intergenic | 45.0% | |
| ACTTGGCTTCCATTGCATAC+GGG | - | chr3.4:96108890-96108909 | None:intergenic | 45.0% | |
| AGGATAGAGGAGTTCATCAG+AGG | + | chr3.4:96107308-96107327 | MS.gene69097:CDS | 45.0% | |
| AGTTTGTGAGATGGAGACGA+CGG | - | chr3.4:96106620-96106639 | None:intergenic | 45.0% | |
| CACGACCGTCACTACATAAA+CGG | + | chr3.4:96106575-96106594 | MS.gene69097:CDS | 45.0% | |
| CACTTGGCTTCCATTGCATA+CGG | - | chr3.4:96108891-96108910 | None:intergenic | 45.0% | |
| CATGCGACGATACAATCGAA+AGG | + | chr3.4:96106706-96106725 | MS.gene69097:CDS | 45.0% | |
| CATTCAACAGCACAATCCTG+TGG | + | chr3.4:96108978-96108997 | MS.gene69097:CDS | 45.0% | |
| CCCCAAAGAACCGCAAATTT+CGG | - | chr3.4:96107987-96108006 | None:intergenic | 45.0% | |
| CCGAAATTTGCGGTTCTTTG+GGG | + | chr3.4:96107984-96108003 | MS.gene69097:intron | 45.0% | |
| CTCAAACATGAACGCTGAGA+AGG | + | chr3.4:96107012-96107031 | MS.gene69097:CDS | 45.0% | |
| GCATTATCCAATGAGTCTGG+CGG | + | chr3.4:96107852-96107871 | MS.gene69097:intron | 45.0% | |
| GCCGAAATTTGCGGTTCTTT+GGG | + | chr3.4:96107983-96108002 | MS.gene69097:intron | 45.0% | |
| GGGTATTCACAAGCTTGTCT+GGG | + | chr3.4:96108120-96108139 | MS.gene69097:intron | 45.0% | |
| GGGTGTGATGTATAGGCATT+TGG | + | chr3.4:96107258-96107277 | MS.gene69097:CDS | 45.0% | |
| GGTGGAAGATGAGAGTCAAA+TGG | + | chr3.4:96109182-96109201 | MS.gene69097:CDS | 45.0% | |
| TCAACGGATGTGAAGGATAG+AGG | + | chr3.4:96107295-96107314 | MS.gene69097:CDS | 45.0% | |
| TCTGGCGGTTACAGTTATTG+AGG | + | chr3.4:96107867-96107886 | MS.gene69097:intron | 45.0% | |
| TGGGTATTCACAAGCTTGTC+TGG | + | chr3.4:96108119-96108138 | MS.gene69097:intron | 45.0% | |
| TTCTCAAGCATCCAACCCTT+TGG | - | chr3.4:96109279-96109298 | None:intergenic | 45.0% | |
| ! | ATAGGTTAGGGCAGGTTTTG+AGG | + | chr3.4:96107155-96107174 | MS.gene69097:CDS | 45.0% |
| ! | CTCAGTGAAAGAGGGTTTTC+AGG | + | chr3.4:96109051-96109070 | MS.gene69097:CDS | 45.0% |
| ! | GCAGTTGTAGTTGGTACTGT+TGG | + | chr3.4:96107628-96107647 | MS.gene69097:intron | 45.0% |
| ! | GCGTTCTCTGTTTCTTCGTT+GGG | + | chr3.4:96106756-96106775 | MS.gene69097:CDS | 45.0% |
| ! | GGGATTGTGATTTGGGAGTT+TGG | + | chr3.4:96107689-96107708 | MS.gene69097:intron | 45.0% |
| ! | TCGGGGTTTTTACATACGCA+AGG | + | chr3.4:96108014-96108033 | MS.gene69097:intron | 45.0% |
| ! | TGCGTTCTCTGTTTCTTCGT+TGG | + | chr3.4:96106755-96106774 | MS.gene69097:CDS | 45.0% |
| ! | TGGTGGTGATGATGAGGATA+AGG | + | chr3.4:96106946-96106965 | MS.gene69097:CDS | 45.0% |
| ! | TTGAAAAAGCACGTCAGCGT+CGG | + | chr3.4:96106920-96106939 | MS.gene69097:CDS | 45.0% |
| !! | GGTTCTTTGGGGCATCAATT+CGG | + | chr3.4:96107995-96108014 | MS.gene69097:intron | 45.0% |
| !! | GTTCTTTGGGGCATCAATTC+GGG | + | chr3.4:96107996-96108015 | MS.gene69097:intron | 45.0% |
| !! | TTCTTTGGGGCATCAATTCG+GGG | + | chr3.4:96107997-96108016 | MS.gene69097:intron | 45.0% |
| AATTGCAGGTGATATGGGGG+TGG | - | chr3.4:96109106-96109125 | None:intergenic | 50.0% | |
| ACGGCGCACAAGTGTTTAAC+TGG | - | chr3.4:96107903-96107922 | None:intergenic | 50.0% | |
| ACTGTAACCGCCAGACTCAT+TGG | - | chr3.4:96107862-96107881 | None:intergenic | 50.0% | |
| AGATGGAGACGACGGTGAAA+AGG | - | chr3.4:96106612-96106631 | None:intergenic | 50.0% | |
| ATTCCGACGGACGTTATCTC+CGG | + | chr3.4:96106547-96106566 | MS.gene69097:CDS | 50.0% | |
| CAATCCTGTGGGATCCAAAG+CGG | + | chr3.4:96108990-96109009 | MS.gene69097:CDS | 50.0% | |
| CACCGCCGTTTATGTAGTGA+CGG | - | chr3.4:96106583-96106602 | None:intergenic | 50.0% | |
| CAGGCCACATGCTTCAATGA+AGG | + | chr3.4:96108402-96108421 | MS.gene69097:intron | 50.0% | |
| CCTACTGAGCCAACCATCTT+TGG | + | chr3.4:96108467-96108486 | MS.gene69097:intron | 50.0% | |
| GACCGTCACTACATAAACGG+CGG | + | chr3.4:96106578-96106597 | MS.gene69097:CDS | 50.0% | |
| GCAATGGAAGCCAAGTGCTT+GGG | + | chr3.4:96108894-96108913 | MS.gene69097:CDS | 50.0% | |
| GCTTGCACCAAGCAAGAACA+AGG | + | chr3.4:96108850-96108869 | MS.gene69097:CDS | 50.0% | |
| GGCCGAAATTTGCGGTTCTT+TGG | + | chr3.4:96107982-96108001 | MS.gene69097:intron | 50.0% | |
| TAGTGACGGTCGTGATATGC+CGG | - | chr3.4:96106569-96106588 | None:intergenic | 50.0% | |
| TCAAATGGAAGGTTCGCCAC+CGG | + | chr3.4:96109197-96109216 | MS.gene69097:CDS | 50.0% | |
| TCCACCACCACCCATAAAAG+CGG | - | chr3.4:96107193-96107212 | None:intergenic | 50.0% | |
| TGACGTGGATGACAGCATCT+AGG | - | chr3.4:96109305-96109324 | None:intergenic | 50.0% | |
| TGCAATGGAAGCCAAGTGCT+TGG | + | chr3.4:96108893-96108912 | MS.gene69097:CDS | 50.0% | |
| TTGTATGCCACCCAAGCACT+TGG | - | chr3.4:96108907-96108926 | None:intergenic | 50.0% | |
| ! | CCAAAGATGGTTGGCTCAGT+AGG | - | chr3.4:96108470-96108489 | None:intergenic | 50.0% |
| !! | GTTCTTGCTTGGTGCAAGCA+TGG | - | chr3.4:96108849-96108868 | None:intergenic | 50.0% |
| !!! | GTTAGGGCAGGTTTTGAGGT+TGG | + | chr3.4:96107159-96107178 | MS.gene69097:CDS | 50.0% |
| ACCACCACCCATAAAAGCGG+CGG | - | chr3.4:96107190-96107209 | None:intergenic | 55.0% | |
| ATGCCGGAGATAACGTCCGT+CGG | - | chr3.4:96106553-96106572 | None:intergenic | 55.0% | |
| ATGGAAGCCAAGTGCTTGGG+TGG | + | chr3.4:96108897-96108916 | MS.gene69097:CDS | 55.0% | |
| ATGTGGCCTGTCTCGACCAT+GGG | - | chr3.4:96108392-96108411 | None:intergenic | 55.0% | |
| CAAATGGAAGGTTCGCCACC+GGG | + | chr3.4:96109198-96109217 | MS.gene69097:CDS | 55.0% | |
| CGTCACTACATAAACGGCGG+TGG | + | chr3.4:96106581-96106600 | MS.gene69097:CDS | 55.0% | |
| TGGAGACGACGGTGAAAAGG+CGG | - | chr3.4:96106609-96106628 | None:intergenic | 55.0% | |
| TTGGAGGGTCCCGTATGCAA+TGG | + | chr3.4:96108878-96108897 | MS.gene69097:CDS | 55.0% | |
| ! | AAAAAGCACGTCAGCGTCGG+TGG | + | chr3.4:96106923-96106942 | MS.gene69097:CDS | 55.0% |
| ACCACCCATAAAAGCGGCGG+CGG | - | chr3.4:96107187-96107206 | None:intergenic | 60.0% | |
| CATGTGGCCTGTCTCGACCA+TGG | - | chr3.4:96108393-96108412 | None:intergenic | 60.0% | |
| CCTGTCTCGACCATGGGAGT+GGG | - | chr3.4:96108386-96108405 | None:intergenic | 60.0% | |
| TCCTGTGGGATCCAAAGCGG+TGG | + | chr3.4:96108993-96109012 | MS.gene69097:CDS | 60.0% | |
| TGTGGGATCCAAAGCGGTGG+CGG | + | chr3.4:96108996-96109015 | MS.gene69097:CDS | 60.0% | |
| ! | CTTGGTGCAAGCATGGCGAC+AGG | - | chr3.4:96108842-96108861 | None:intergenic | 60.0% |
| ! | GGTAGGTTGACCCACTCCCA+TGG | + | chr3.4:96108373-96108392 | MS.gene69097:intron | 60.0% |
| !! | CGGTGGTGGTGGTGATGATG+AGG | + | chr3.4:96106940-96106959 | MS.gene69097:CDS | 60.0% |
| !!! | GCCGCTTTTATGGGTGGTGG+TGG | + | chr3.4:96107189-96107208 | MS.gene69097:CDS | 60.0% |
| CCCACTCCCATGGTCGAGAC+AGG | + | chr3.4:96108383-96108402 | MS.gene69097:intron | 65.0% | |
| GCCTGTCTCGACCATGGGAG+TGG | - | chr3.4:96108387-96108406 | None:intergenic | 65.0% | |
| ! | GCCACCGCTTTGGATCCCAC+AGG | - | chr3.4:96108997-96109016 | None:intergenic | 65.0% |
| !! | AAGCACGTCAGCGTCGGTGG+TGG | + | chr3.4:96106926-96106945 | MS.gene69097:CDS | 65.0% |
| !!! | GCCGCCGCTTTTATGGGTGG+TGG | + | chr3.4:96107186-96107205 | MS.gene69097:CDS | 65.0% |
| !!! | GGTGCCGCCGCCGCTTTTAT+GGG | + | chr3.4:96107180-96107199 | MS.gene69097:CDS | 65.0% |
| !!! | TGGTGCCGCCGCCGCTTTTA+TGG | + | chr3.4:96107179-96107198 | MS.gene69097:CDS | 65.0% |
| !! | CACGTCAGCGTCGGTGGTGG+TGG | + | chr3.4:96106929-96106948 | MS.gene69097:CDS | 70.0% |
| !!! | GCCGCCGCCGCTTTTATGGG+TGG | + | chr3.4:96107183-96107202 | MS.gene69097:CDS | 70.0% |
| !! | GTAGGGCGCCGCCACCGCTT+TGG | - | chr3.4:96109007-96109026 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96106539 | 96109329 | 96106539 | ID=MS.gene69097 |
| chr3.4 | mRNA | 96106539 | 96109329 | 96106539 | ID=MS.gene69097.t1;Parent=MS.gene69097 |
| chr3.4 | exon | 96106539 | 96107440 | 96106539 | ID=MS.gene69097.t1.exon1;Parent=MS.gene69097.t1 |
| chr3.4 | CDS | 96106539 | 96107440 | 96106539 | ID=cds.MS.gene69097.t1;Parent=MS.gene69097.t1 |
| chr3.4 | exon | 96108823 | 96109072 | 96108823 | ID=MS.gene69097.t1.exon2;Parent=MS.gene69097.t1 |
| chr3.4 | CDS | 96108823 | 96109072 | 96108823 | ID=cds.MS.gene69097.t1;Parent=MS.gene69097.t1 |
| chr3.4 | exon | 96109159 | 96109329 | 96109159 | ID=MS.gene69097.t1.exon3;Parent=MS.gene69097.t1 |
| chr3.4 | CDS | 96109159 | 96109329 | 96109159 | ID=cds.MS.gene69097.t1;Parent=MS.gene69097.t1 |
| Gene Sequence |
| Protein sequence |
