Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87292.t1 | XP_003596650.1 | 100 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 7.50E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87292.t1 | A6MZM2 | 89.6 | 115 | 11 | 1 | 1 | 114 | 1 | 115 | 1.2e-52 | 206.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87292.t1 | G7IJN1 | 100.0 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 5.4e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene87292 | -0.821167 | 4.66E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene87292 | 0.814827 | 1.26E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene87292 | 0.807363 | 5.24E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene87292 | 0.804939 | 1.70E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene87292 | 0.813208 | 2.88E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene87292 | 0.833526 | 5.07E-56 | -1.69E-46 |
| MS.gene049411 | MS.gene87292 | 0.874234 | 7.92E-68 | -1.69E-46 |
| MS.gene049680 | MS.gene87292 | 0.832487 | 9.19E-56 | -1.69E-46 |
| MS.gene049807 | MS.gene87292 | 0.834262 | 3.32E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene87292 | 0.834661 | 2.63E-56 | -1.69E-46 |
| MS.gene049951 | MS.gene87292 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene87292 | 0.808989 | 2.36E-50 | -1.69E-46 |
| MS.gene05029 | MS.gene87292 | 0.804552 | 2.04E-49 | -1.69E-46 |
| MS.gene050384 | MS.gene87292 | 0.810491 | 1.12E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene87292 | 0.803788 | 2.95E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene87292 | 0.812297 | 4.55E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene87292 | 0.823152 | 1.62E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene87292 | 0.84198 | 3.42E-58 | -1.69E-46 |
| MS.gene050689 | MS.gene87292 | 0.839888 | 1.21E-57 | -1.69E-46 |
| MS.gene050752 | MS.gene87292 | 0.880857 | 3.89E-70 | -1.69E-46 |
| MS.gene050838 | MS.gene87292 | 0.81774 | 2.82E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene87292 | 0.842528 | 2.45E-58 | -1.69E-46 |
| MS.gene050955 | MS.gene87292 | 0.885979 | 5.10E-72 | -1.69E-46 |
| MS.gene051003 | MS.gene87292 | 0.848373 | 6.39E-60 | -1.69E-46 |
| MS.gene051043 | MS.gene87292 | 0.834112 | 3.62E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene87292 | 0.872461 | 3.12E-67 | -1.69E-46 |
| MS.gene051343 | MS.gene87292 | 0.837014 | 6.67E-57 | -1.69E-46 |
| MS.gene05134 | MS.gene87292 | 0.830922 | 2.24E-55 | -1.69E-46 |
| MS.gene051365 | MS.gene87292 | 0.817123 | 3.88E-52 | -1.69E-46 |
| MS.gene051731 | MS.gene87292 | 0.814974 | 1.17E-51 | -1.69E-46 |
| MS.gene051856 | MS.gene87292 | 0.823159 | 1.61E-53 | -1.69E-46 |
| MS.gene051902 | MS.gene87292 | 0.826461 | 2.68E-54 | -1.69E-46 |
| MS.gene052072 | MS.gene87292 | 0.881879 | 1.66E-70 | -1.69E-46 |
| MS.gene052296 | MS.gene87292 | 0.831898 | 1.29E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene87292 | 0.827956 | 1.17E-54 | -1.69E-46 |
| MS.gene052518 | MS.gene87292 | 0.810109 | 1.36E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene87292 | 0.827975 | 1.16E-54 | -1.69E-46 |
| MS.gene052793 | MS.gene87292 | 0.862117 | 6.36E-64 | -1.69E-46 |
| MS.gene052947 | MS.gene87292 | 0.826002 | 3.44E-54 | -1.69E-46 |
| MS.gene053228 | MS.gene87292 | 0.811666 | 6.25E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene87292 | 0.833634 | 4.77E-56 | -1.69E-46 |
| MS.gene053879 | MS.gene87292 | 0.813005 | 3.19E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene87292 | 0.812334 | 4.47E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene87292 | 0.862678 | 4.28E-64 | -1.69E-46 |
| MS.gene054005 | MS.gene87292 | 0.821346 | 4.24E-53 | -1.69E-46 |
| MS.gene054142 | MS.gene87292 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene87292 | 0.884066 | 2.63E-71 | -1.69E-46 |
| MS.gene054413 | MS.gene87292 | 0.80721 | 5.65E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene87292 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene054709 | MS.gene87292 | 0.829386 | 5.30E-55 | -1.69E-46 |
| MS.gene055339 | MS.gene87292 | 0.829373 | 5.34E-55 | -1.69E-46 |
| MS.gene055555 | MS.gene87292 | 0.80824 | 3.41E-50 | -1.69E-46 |
| MS.gene055765 | MS.gene87292 | 0.80916 | 2.17E-50 | -1.69E-46 |
| MS.gene05648 | MS.gene87292 | 0.83007 | 3.61E-55 | -1.69E-46 |
| MS.gene056578 | MS.gene87292 | 0.820134 | 8.05E-53 | -1.69E-46 |
| MS.gene056693 | MS.gene87292 | 0.809688 | 1.67E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene87292 | 0.817215 | 3.70E-52 | -1.69E-46 |
| MS.gene056881 | MS.gene87292 | 0.816871 | 4.42E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene87292 | 0.873785 | 1.12E-67 | -1.69E-46 |
| MS.gene057208 | MS.gene87292 | 0.820599 | 6.30E-53 | -1.69E-46 |
| MS.gene057234 | MS.gene87292 | 0.802792 | 4.74E-49 | -1.69E-46 |
| MS.gene057392 | MS.gene87292 | 0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene057694 | MS.gene87292 | 0.866229 | 3.32E-65 | -1.69E-46 |
| MS.gene057705 | MS.gene87292 | 0.840103 | 1.06E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene87292 | 0.818748 | 1.67E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene87292 | 0.821854 | 3.24E-53 | -1.69E-46 |
| MS.gene058008 | MS.gene87292 | 0.843751 | 1.16E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene87292 | 0.825986 | 3.48E-54 | -1.69E-46 |
| MS.gene058054 | MS.gene87292 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene87292 | 0.809966 | 1.46E-50 | -1.69E-46 |
| MS.gene058149 | MS.gene87292 | 0.83453 | 2.84E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene87292 | 0.812313 | 4.51E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene87292 | 0.814657 | 1.38E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene87292 | 0.849014 | 4.24E-60 | -1.69E-46 |
| MS.gene059227 | MS.gene87292 | 0.828992 | 6.60E-55 | -1.69E-46 |
| MS.gene059778 | MS.gene87292 | 0.816184 | 6.30E-52 | -1.69E-46 |
| MS.gene059802 | MS.gene87292 | 0.818506 | 1.89E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene87292 | -0.844739 | 6.27E-59 | -1.69E-46 |
| MS.gene060244 | MS.gene87292 | 0.852286 | 5.10E-61 | -1.69E-46 |
| MS.gene060365 | MS.gene87292 | 0.802251 | 6.13E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene87292 | 0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene87292 | 0.867353 | 1.46E-65 | -1.69E-46 |
| MS.gene060937 | MS.gene87292 | 0.864154 | 1.49E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene87292 | 0.854524 | 1.16E-61 | -1.69E-46 |
| MS.gene061135 | MS.gene87292 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene061243 | MS.gene87292 | 0.813439 | 2.56E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87292.t1 | MTR_2g083180 | 100.000 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 1.67e-82 | 236 |
| MS.gene87292.t1 | MTR_2g083180 | 96.262 | 107 | 4 | 0 | 8 | 114 | 10 | 116 | 2.99e-73 | 213 |
| MS.gene87292.t1 | MTR_4g046733 | 87.719 | 114 | 13 | 1 | 1 | 114 | 1 | 113 | 3.69e-72 | 210 |
| MS.gene87292.t1 | MTR_2g083180 | 91.228 | 114 | 8 | 1 | 1 | 112 | 1 | 114 | 1.32e-71 | 209 |
| MS.gene87292.t1 | MTR_2g083180 | 100.000 | 100 | 0 | 0 | 1 | 100 | 1 | 100 | 1.40e-71 | 209 |
| MS.gene87292.t1 | MTR_3g051950 | 77.193 | 114 | 24 | 1 | 1 | 114 | 1 | 112 | 3.86e-60 | 180 |
| MS.gene87292.t1 | MTR_2g083180 | 100.000 | 83 | 0 | 0 | 1 | 83 | 1 | 83 | 2.71e-58 | 175 |
| MS.gene87292.t1 | MTR_5g092820 | 72.973 | 111 | 28 | 1 | 4 | 114 | 2 | 110 | 1.86e-55 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87292.t1 | AT4G27130 | 86.842 | 114 | 14 | 1 | 1 | 114 | 1 | 113 | 9.73e-72 | 209 |
| MS.gene87292.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene87292.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene87292.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene87292.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene87292.t1 | AT1G54290 | 85.088 | 114 | 16 | 1 | 1 | 114 | 1 | 113 | 2.45e-70 | 206 |
| MS.gene87292.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
| MS.gene87292.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
| MS.gene87292.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
Find 25 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTGAGGACGCCGGTGC+TGG | 0.285317 | 2.2:-14123666 | MS.gene87292:CDS |
| AAGGAGCATATTAAAATTCA+TGG | 0.292939 | 2.2:-14122378 | MS.gene87292:CDS |
| TTCGCTGCTGTATACGAATA+TGG | 0.326573 | 2.2:+14123625 | None:intergenic |
| ATTCATTACCTGGACTAAAA+AGG | 0.327921 | 2.2:+14123356 | None:intergenic |
| CCTGTCCTTGCTCTGGGTCC+TGG | 0.375764 | 2.2:+14123496 | None:intergenic |
| AGACATACCTGTCCTTGCTC+TGG | 0.415595 | 2.2:+14123489 | None:intergenic |
| TACAACAAAACTCCTTCTTA+AGG | 0.416659 | 2.2:+14123532 | None:intergenic |
| GACATACCTGTCCTTGCTCT+GGG | 0.463686 | 2.2:+14123490 | None:intergenic |
| TGAATTCTTTCTTCAATCCC+TGG | 0.465760 | 2.2:+14123577 | None:intergenic |
| GTGTAGGTTATTCAACTTCA+AGG | 0.470369 | 2.2:-14123402 | MS.gene87292:intron |
| TTGTAATGGTACAGTTGTCC+AGG | 0.470439 | 2.2:-14123514 | MS.gene87292:CDS |
| ATGCTGAGGACGCCGGTGCT+GGG | 0.477491 | 2.2:-14123665 | MS.gene87292:CDS |
| TCAGCATTTGCCTCAGCAAA+AGG | 0.478903 | 2.2:+14123681 | None:intergenic |
| ATTCGTATACAGCAGCGAAA+TGG | 0.491023 | 2.2:-14123621 | MS.gene87292:CDS |
| CGCCGGTGCTGGGTCATCAA+AGG | 0.522725 | 2.2:-14123655 | MS.gene87292:CDS |
| ACAGGCTGGAATCGTGAAGA+AGG | 0.545416 | 2.2:-14122397 | MS.gene87292:intron |
| AAAAGCTTGACAACTGTCCA+GGG | 0.558576 | 2.2:-14123594 | MS.gene87292:CDS |
| TTCAACTTCAAGGCGATCAG+AGG | 0.577444 | 2.2:-14123392 | MS.gene87292:CDS |
| GAGGCAAATGCTGAGGACGC+CGG | 0.578099 | 2.2:-14123672 | MS.gene87292:CDS |
| CTCCTTTGATGACCCAGCAC+CGG | 0.583753 | 2.2:+14123653 | None:intergenic |
| GATTCTGAAAGACCTTAAGA+AGG | 0.584832 | 2.2:-14123544 | MS.gene87292:CDS |
| CCAGGACCCAGAGCAAGGAC+AGG | 0.587475 | 2.2:-14123496 | MS.gene87292:intron |
| GCACAAATTCCTACTGCCTA+CGG | 0.609588 | 2.2:-14124635 | MS.gene87292:intron |
| GTTGTCCAGGACCCAGAGCA+AGG | 0.630590 | 2.2:-14123501 | MS.gene87292:CDS |
| TCCAACTTACCGTAGGCAGT+AGG | 0.690363 | 2.2:+14124626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATCAAAAGTAAAA+CGG | + | chr2.2:14123796-14123815 | None:intergenic | 10.0% |
| !! | CATTATAAGTAAAAAAAATA+GGG | + | chr2.2:14122820-14122839 | None:intergenic | 10.0% |
| !! | TCATTATAAGTAAAAAAAAT+AGG | + | chr2.2:14122821-14122840 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTTATTATCTTT+AGG | - | chr2.2:14122584-14122603 | MS.gene87292:intron | 10.0% |
| !! | TAAACATAAAATAATGTCAA+AGG | + | chr2.2:14124023-14124042 | None:intergenic | 15.0% |
| !! | TTTACCCATAAATTTATATT+TGG | - | chr2.2:14124316-14124335 | MS.gene87292:intron | 15.0% |
| !!! | CTTCAAATAACATTTTTTTA+TGG | - | chr2.2:14123597-14123616 | MS.gene87292:CDS | 15.0% |
| !!! | GTTTTTAATGTTTATACTTT+GGG | - | chr2.2:14122996-14123015 | MS.gene87292:intron | 15.0% |
| !!! | TTTACTTTTGATATTTTATG+TGG | - | chr2.2:14123797-14123816 | MS.gene87292:intron | 15.0% |
| !!! | TTTCTAAAATAGTTTTTTCT+GGG | - | chr2.2:14122949-14122968 | MS.gene87292:intron | 15.0% |
| !!! | TTTTCTAAAATAGTTTTTTC+TGG | - | chr2.2:14122948-14122967 | MS.gene87292:intron | 15.0% |
| !! | AGTAAAACGGAAAAATAAAA+AGG | + | chr2.2:14123783-14123802 | None:intergenic | 20.0% |
| !! | ATCCACCAAATATAAATTTA+TGG | + | chr2.2:14124324-14124343 | None:intergenic | 20.0% |
| !! | ATTATTTGAATTAAGCATAG+CGG | + | chr2.2:14123987-14124006 | None:intergenic | 20.0% |
| !! | GTAAAACGGAAAAATAAAAA+GGG | + | chr2.2:14123782-14123801 | None:intergenic | 20.0% |
| !! | TCCACCAAATATAAATTTAT+GGG | + | chr2.2:14124323-14124342 | None:intergenic | 20.0% |
| !!! | AAAAAGAAGTCTGTTTTTAA+AGG | - | chr2.2:14123888-14123907 | MS.gene87292:intron | 20.0% |
| !!! | ATAACATTTTTTTATGGTGT+AGG | - | chr2.2:14123603-14123622 | MS.gene87292:CDS | 20.0% |
| !!! | ATATTGCTTTTACTTTTACT+TGG | - | chr2.2:14122782-14122801 | MS.gene87292:intron | 20.0% |
| !!! | ATCAACTATTTTTACTAAAC+AGG | - | chr2.2:14124120-14124139 | MS.gene87292:intron | 20.0% |
| !!! | GGTTTTTAATGTTTATACTT+TGG | - | chr2.2:14122995-14123014 | MS.gene87292:intron | 20.0% |
| !!! | GTAAAAATAGTTGATATTCT+AGG | + | chr2.2:14124115-14124134 | None:intergenic | 20.0% |
| !!! | TCAACTATTTTTACTAAACA+GGG | - | chr2.2:14124121-14124140 | MS.gene87292:intron | 20.0% |
| !!! | TTCTAAAATAGTTTTTTCTG+GGG | - | chr2.2:14122950-14122969 | MS.gene87292:intron | 20.0% |
| !!! | TTGATCTGAAATAGTATTTT+GGG | - | chr2.2:14123092-14123111 | MS.gene87292:intron | 20.0% |
| !!! | TTTGATCTGAAATAGTATTT+TGG | - | chr2.2:14123091-14123110 | MS.gene87292:intron | 20.0% |
| ! | AAAAAATTCTGTGCAATTCT+TGG | + | chr2.2:14122931-14122950 | None:intergenic | 25.0% |
| ! | ACCCATAAATTTATATTTGG+TGG | - | chr2.2:14124319-14124338 | MS.gene87292:intron | 25.0% |
| ! | AGATGAAGAATAGAAATAGA+TGG | - | chr2.2:14123222-14123241 | MS.gene87292:intron | 25.0% |
| ! | ATAGAAGAATTTCTCATTTC+TGG | + | chr2.2:14122691-14122710 | None:intergenic | 25.0% |
| ! | CAATTATACTGTGTATTGTT+GGG | - | chr2.2:14122513-14122532 | MS.gene87292:intron | 25.0% |
| ! | TATTCATGTCATTCATCATA+TGG | - | chr2.2:14124470-14124489 | MS.gene87292:intron | 25.0% |
| ! | TCAAAGTTATGTACAATGAT+TGG | + | chr2.2:14123076-14123095 | None:intergenic | 25.0% |
| ! | TCAATTATACTGTGTATTGT+TGG | - | chr2.2:14122512-14122531 | MS.gene87292:intron | 25.0% |
| ! | TTAAGCATCTTGTTCAATAA+TGG | + | chr2.2:14123047-14123066 | None:intergenic | 25.0% |
| ! | TTATTTGAATTAAGCATAGC+GGG | + | chr2.2:14123986-14124005 | None:intergenic | 25.0% |
| !! | AAATGTTATTTGAAGCAACA+AGG | + | chr2.2:14123592-14123611 | None:intergenic | 25.0% |
| !! | AAGGAGCATATTAAAATTCA+TGG | - | chr2.2:14124643-14124662 | MS.gene87292:CDS | 25.0% |
| !! | AATGTTATTTGAAGCAACAA+GGG | + | chr2.2:14123591-14123610 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTTCTCCTGATT+GGG | - | chr2.2:14124151-14124170 | MS.gene87292:intron | 25.0% |
| !!! | TATGTTTTTTTTCTCCTGAT+TGG | - | chr2.2:14124150-14124169 | MS.gene87292:intron | 25.0% |
| !!! | TGATCTGAAATAGTATTTTG+GGG | - | chr2.2:14123093-14123112 | MS.gene87292:intron | 25.0% |
| AATAAACGTTTGTCACTACA+TGG | + | chr2.2:14124454-14124473 | None:intergenic | 30.0% | |
| AATGAATGACTTCACATCTT+TGG | - | chr2.2:14123681-14123700 | MS.gene87292:CDS | 30.0% | |
| AGAATATAACAGATCGTTGT+AGG | + | chr2.2:14124396-14124415 | None:intergenic | 30.0% | |
| AGAATCTTAACGTTTGTGAA+GGG | - | chr2.2:14123151-14123170 | MS.gene87292:intron | 30.0% | |
| AGGAGAAAAAAAACATACTG+AGG | + | chr2.2:14124147-14124166 | None:intergenic | 30.0% | |
| ATATGATATATGACTCCTGT+GGG | - | chr2.2:14123295-14123314 | MS.gene87292:intron | 30.0% | |
| ATTCATTACCTGGACTAAAA+AGG | + | chr2.2:14123668-14123687 | None:intergenic | 30.0% | |
| GAATTTACTAGTCAATTGTC+AGG | + | chr2.2:14122625-14122644 | None:intergenic | 30.0% | |
| GATTTAGATACGTAAATCAC+TGG | - | chr2.2:14124362-14124381 | MS.gene87292:intron | 30.0% | |
| TACAACAAAACTCCTTCTTA+AGG | + | chr2.2:14123492-14123511 | None:intergenic | 30.0% | |
| TAGAATCTTAACGTTTGTGA+AGG | - | chr2.2:14123150-14123169 | MS.gene87292:intron | 30.0% | |
| TATCTAAATCCGTTCTATAG+AGG | + | chr2.2:14124352-14124371 | None:intergenic | 30.0% | |
| TATTCATGCCTTTCATTGTA+TGG | - | chr2.2:14124513-14124532 | MS.gene87292:intron | 30.0% | |
| ! | AATTTTAGATCCTTTTGCTG+AGG | - | chr2.2:14123330-14123349 | MS.gene87292:intron | 30.0% |
| ! | ATGTTATTTGAAGCAACAAG+GGG | + | chr2.2:14123590-14123609 | None:intergenic | 30.0% |
| ! | TCAGTTTTCCATACAATGAA+AGG | + | chr2.2:14124524-14124543 | None:intergenic | 30.0% |
| !! | AATAAAAAGGGTACTTAACC+AGG | + | chr2.2:14123770-14123789 | None:intergenic | 30.0% |
| !! | ATAAAAAGGGTACTTAACCA+GGG | + | chr2.2:14123769-14123788 | None:intergenic | 30.0% |
| !! | CATTTCTGAAGTTTAGTTGA+AGG | + | chr2.2:14122746-14122765 | None:intergenic | 30.0% |
| !!! | AAGAAGGAGTTTTGTTGTAA+TGG | - | chr2.2:14123493-14123512 | MS.gene87292:intron | 30.0% |
| AAGGCATATGCTTAGCTTAT+TGG | - | chr2.2:14123907-14123926 | MS.gene87292:intron | 35.0% | |
| ATGTGAAGTCATTCATTACC+TGG | + | chr2.2:14123678-14123697 | None:intergenic | 35.0% | |
| GATATGATATATGACTCCTG+TGG | - | chr2.2:14123294-14123313 | MS.gene87292:intron | 35.0% | |
| GTGTAGGTTATTCAACTTCA+AGG | - | chr2.2:14123619-14123638 | MS.gene87292:CDS | 35.0% | |
| TACATAATGAATGCTGTGTG+AGG | + | chr2.2:14123203-14123222 | None:intergenic | 35.0% | |
| TGAATTCTTTCTTCAATCCC+TGG | + | chr2.2:14123447-14123466 | None:intergenic | 35.0% | |
| TTCAAATTCACAAGTGCAGA+GGG | + | chr2.2:14124605-14124624 | None:intergenic | 35.0% | |
| TTCATGATATGCAGTCATTC+TGG | - | chr2.2:14122469-14122488 | MS.gene87292:intron | 35.0% | |
| ! | ATATGCAGTCATTCTGGAAA+GGG | - | chr2.2:14122475-14122494 | MS.gene87292:intron | 35.0% |
| ! | GATTCTGAAAGACCTTAAGA+AGG | - | chr2.2:14123477-14123496 | MS.gene87292:intron | 35.0% |
| ! | GCTTAACGTGGTTTAAGATT+GGG | - | chr2.2:14122974-14122993 | MS.gene87292:intron | 35.0% |
| ! | GTCTTGAGGTGGTTTAAAAT+TGG | - | chr2.2:14123115-14123134 | MS.gene87292:intron | 35.0% |
| ! | TGCTTAACGTGGTTTAAGAT+TGG | - | chr2.2:14122973-14122992 | MS.gene87292:intron | 35.0% |
| ! | TTTGTTAGCTTCTCAGCAAT+AGG | - | chr2.2:14124076-14124095 | MS.gene87292:intron | 35.0% |
| !! | AATCTGAGACAGCATTTTCA+AGG | + | chr2.2:14122541-14122560 | None:intergenic | 35.0% |
| !!! | AATAGTATTTTGGGGTCTTG+AGG | - | chr2.2:14123101-14123120 | MS.gene87292:intron | 35.0% |
| AAAAAGCTTGACAACTGTCC+AGG | - | chr2.2:14123426-14123445 | MS.gene87292:intron | 40.0% | |
| AAAAGCTTGACAACTGTCCA+GGG | - | chr2.2:14123427-14123446 | MS.gene87292:intron | 40.0% | |
| ACTTGTGAATTTGAACAGGC+TGG | - | chr2.2:14124610-14124629 | MS.gene87292:intron | 40.0% | |
| ATAGAGTTCCAACTTACCGT+AGG | + | chr2.2:14122405-14122424 | None:intergenic | 40.0% | |
| ATTCGTATACAGCAGCGAAA+TGG | - | chr2.2:14123400-14123419 | MS.gene87292:intron | 40.0% | |
| CTGCACTTGTGAATTTGAAC+AGG | - | chr2.2:14124606-14124625 | MS.gene87292:intron | 40.0% | |
| GGATGTATGCCTCTATAGAA+CGG | - | chr2.2:14124340-14124359 | MS.gene87292:intron | 40.0% | |
| GTACAAGATCATTCCCAATC+AGG | + | chr2.2:14124167-14124186 | None:intergenic | 40.0% | |
| GTTCAAATTCACAAGTGCAG+AGG | + | chr2.2:14124606-14124625 | None:intergenic | 40.0% | |
| TTCGCTGCTGTATACGAATA+TGG | + | chr2.2:14123399-14123418 | None:intergenic | 40.0% | |
| TTGTAATGGTACAGTTGTCC+AGG | - | chr2.2:14123507-14123526 | MS.gene87292:CDS | 40.0% | |
| ! | GATATGCAGTCATTCTGGAA+AGG | - | chr2.2:14122474-14122493 | MS.gene87292:intron | 40.0% |
| ! | TGTCTGAGATCAAGTTTCTC+TGG | - | chr2.2:14123840-14123859 | MS.gene87292:intron | 40.0% |
| !! | TGTGTCTACCTTTTTAGTCC+AGG | - | chr2.2:14123657-14123676 | MS.gene87292:CDS | 40.0% |
| !! | TTGGGTTTTATCGTGTGTGA+AGG | - | chr2.2:14123014-14123033 | MS.gene87292:intron | 40.0% |
| AAGACTGTTTACCCAAGTCC+CGG | + | chr2.2:14124298-14124317 | None:intergenic | 45.0% | |
| ACTTGTAGAGTTGCCTTTCC+CGG | - | chr2.2:14124276-14124295 | MS.gene87292:intron | 45.0% | |
| GACAGACAACACGCATCAAT+AGG | + | chr2.2:14122434-14122453 | None:intergenic | 45.0% | |
| GCACAAATTCCTACTGCCTA+CGG | - | chr2.2:14122386-14122405 | MS.gene87292:CDS | 45.0% | |
| GTGGCGTAATTTGATCTGAG+TGG | - | chr2.2:14123816-14123835 | MS.gene87292:intron | 45.0% | |
| TACTTAACCAGGGAGACAGA+TGG | + | chr2.2:14123759-14123778 | None:intergenic | 45.0% | |
| TCAGCATTTGCCTCAGCAAA+AGG | + | chr2.2:14123343-14123362 | None:intergenic | 45.0% | |
| TTCAACTTCAAGGCGATCAG+AGG | - | chr2.2:14123629-14123648 | MS.gene87292:CDS | 45.0% | |
| TTCACAAGTGCAGAGGGATA+AGG | + | chr2.2:14124599-14124618 | None:intergenic | 45.0% | |
| ! | TTTTGCTGAGGCAAATGCTG+AGG | - | chr2.2:14123342-14123361 | MS.gene87292:intron | 45.0% |
| !!! | AGTATTTTGGGGTCTTGAGG+TGG | - | chr2.2:14123104-14123123 | MS.gene87292:intron | 45.0% |
| !!! | TTTTTCTGGGGTGCTTAACG+TGG | - | chr2.2:14122962-14122981 | MS.gene87292:intron | 45.0% |
| ACAAGTGCCAACCTGCTCAA+AGG | + | chr2.2:14124262-14124281 | None:intergenic | 50.0% | |
| ACAGGCTGGAATCGTGAAGA+AGG | - | chr2.2:14124624-14124643 | MS.gene87292:intron | 50.0% | |
| AGACATACCTGTCCTTGCTC+TGG | + | chr2.2:14123535-14123554 | None:intergenic | 50.0% | |
| AGACTGTTTACCCAAGTCCC+GGG | + | chr2.2:14124297-14124316 | None:intergenic | 50.0% | |
| ATTGTTGCCACACATCCCAC+AGG | + | chr2.2:14123313-14123332 | None:intergenic | 50.0% | |
| CTTGTAGAGTTGCCTTTCCC+GGG | - | chr2.2:14124277-14124296 | MS.gene87292:intron | 50.0% | |
| GACATACCTGTCCTTGCTCT+GGG | + | chr2.2:14123534-14123553 | None:intergenic | 50.0% | |
| TATGACTCCTGTGGGATGTG+TGG | - | chr2.2:14123303-14123322 | MS.gene87292:intron | 50.0% | |
| TCCAACTTACCGTAGGCAGT+AGG | + | chr2.2:14122398-14122417 | None:intergenic | 50.0% | |
| TCCTACTGCCTACGGTAAGT+TGG | - | chr2.2:14122394-14122413 | MS.gene87292:CDS | 50.0% | |
| AGTTGCCTTTCCCGGGACTT+GGG | - | chr2.2:14124284-14124303 | MS.gene87292:intron | 55.0% | |
| CACCAGTCCTTTGAGCAGGT+TGG | - | chr2.2:14124252-14124271 | MS.gene87292:intron | 55.0% | |
| CAGGGAGACAGATGGATCTC+AGG | + | chr2.2:14123751-14123770 | None:intergenic | 55.0% | |
| CTGAGATCCATCTGTCTCCC+TGG | - | chr2.2:14123749-14123768 | MS.gene87292:intron | 55.0% | |
| GTTTACCCAAGTCCCGGGAA+AGG | + | chr2.2:14124292-14124311 | None:intergenic | 55.0% | |
| TGCCAACCTGCTCAAAGGAC+TGG | + | chr2.2:14124257-14124276 | None:intergenic | 55.0% | |
| TTCGCACCAGTCCTTTGAGC+AGG | - | chr2.2:14124248-14124267 | MS.gene87292:intron | 55.0% | |
| ! | CTCCTTTGATGACCCAGCAC+CGG | + | chr2.2:14123371-14123390 | None:intergenic | 55.0% |
| GAGGCAAATGCTGAGGACGC+CGG | - | chr2.2:14123349-14123368 | MS.gene87292:intron | 60.0% | |
| GAGTTGCCTTTCCCGGGACT+TGG | - | chr2.2:14124283-14124302 | MS.gene87292:intron | 60.0% | |
| GTTGTCCAGGACCCAGAGCA+AGG | - | chr2.2:14123520-14123539 | MS.gene87292:CDS | 60.0% | |
| AATGCTGAGGACGCCGGTGC+TGG | - | chr2.2:14123355-14123374 | MS.gene87292:intron | 65.0% | |
| ATGCTGAGGACGCCGGTGCT+GGG | - | chr2.2:14123356-14123375 | MS.gene87292:intron | 65.0% | |
| CCAGGACCCAGAGCAAGGAC+AGG | - | chr2.2:14123525-14123544 | MS.gene87292:CDS | 65.0% | |
| ! | CCTGTCCTTGCTCTGGGTCC+TGG | + | chr2.2:14123528-14123547 | None:intergenic | 65.0% |
| ! | CGCCGGTGCTGGGTCATCAA+AGG | - | chr2.2:14123366-14123385 | MS.gene87292:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 14122371 | 14124672 | 14122371 | ID=MS.gene87292 |
| chr2.2 | mRNA | 14122371 | 14124672 | 14122371 | ID=MS.gene87292.t1;Parent=MS.gene87292 |
| chr2.2 | exon | 14124636 | 14124672 | 14124636 | ID=MS.gene87292.t1.exon1;Parent=MS.gene87292.t1 |
| chr2.2 | CDS | 14124636 | 14124672 | 14124636 | ID=cds.MS.gene87292.t1;Parent=MS.gene87292.t1 |
| chr2.2 | exon | 14123497 | 14123705 | 14123497 | ID=MS.gene87292.t1.exon2;Parent=MS.gene87292.t1 |
| chr2.2 | CDS | 14123497 | 14123705 | 14123497 | ID=cds.MS.gene87292.t1;Parent=MS.gene87292.t1 |
| chr2.2 | exon | 14123365 | 14123418 | 14123365 | ID=MS.gene87292.t1.exon3;Parent=MS.gene87292.t1 |
| chr2.2 | CDS | 14123365 | 14123418 | 14123365 | ID=cds.MS.gene87292.t1;Parent=MS.gene87292.t1 |
| chr2.2 | exon | 14122371 | 14122415 | 14122371 | ID=MS.gene87292.t1.exon4;Parent=MS.gene87292.t1 |
| chr2.2 | CDS | 14122371 | 14122415 | 14122371 | ID=cds.MS.gene87292.t1;Parent=MS.gene87292.t1 |
| Gene Sequence |
| Protein sequence |
