Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87622.t1 | KEH29683.1 | 99.8 | 407 | 1 | 0 | 1 | 407 | 1 | 407 | 1.40E-238 | 835.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87622.t1 | A8MRC7 | 77.1 | 407 | 93 | 0 | 1 | 407 | 1 | 407 | 4.0e-194 | 678.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87622.t1 | A0A072UKR4 | 99.8 | 407 | 1 | 0 | 1 | 407 | 1 | 407 | 1.0e-238 | 835.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene87622 | 0.858315 | 8.96E-63 | -1.69E-46 |
| MS.gene049350 | MS.gene87622 | 0.807562 | 4.76E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene87622 | 0.823173 | 1.60E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene87622 | 0.826458 | 2.68E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene87622 | 0.830842 | 2.34E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene87622 | 0.804305 | 2.30E-49 | -1.69E-46 |
| MS.gene050084 | MS.gene87622 | 0.804626 | 1.97E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene87622 | 0.826554 | 2.54E-54 | -1.69E-46 |
| MS.gene050213 | MS.gene87622 | 0.809534 | 1.80E-50 | -1.69E-46 |
| MS.gene050224 | MS.gene87622 | 0.811487 | 6.83E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene87622 | 0.836928 | 7.02E-57 | -1.69E-46 |
| MS.gene050361 | MS.gene87622 | 0.813707 | 2.23E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene87622 | 0.830053 | 3.65E-55 | -1.69E-46 |
| MS.gene050556 | MS.gene87622 | 0.823544 | 1.31E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene87622 | 0.841771 | 3.88E-58 | -1.69E-46 |
| MS.gene050654 | MS.gene87622 | 0.830611 | 2.66E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene87622 | 0.808459 | 3.07E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene87622 | 0.861835 | 7.76E-64 | -1.69E-46 |
| MS.gene050931 | MS.gene87622 | 0.802847 | 4.62E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene87622 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene87622 | 0.831376 | 1.73E-55 | -1.69E-46 |
| MS.gene051102 | MS.gene87622 | 0.850686 | 1.45E-60 | -1.69E-46 |
| MS.gene051234 | MS.gene87622 | 0.82339 | 1.42E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene87622 | 0.83248 | 9.23E-56 | -1.69E-46 |
| MS.gene051381 | MS.gene87622 | 0.81716 | 3.81E-52 | -1.69E-46 |
| MS.gene051642 | MS.gene87622 | 0.826149 | 3.18E-54 | -1.69E-46 |
| MS.gene051676 | MS.gene87622 | 0.806588 | 7.65E-50 | -1.69E-46 |
| MS.gene051724 | MS.gene87622 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene87622 | 0.802458 | 5.56E-49 | -1.69E-46 |
| MS.gene051856 | MS.gene87622 | 0.811896 | 5.57E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene87622 | 0.811881 | 5.61E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene87622 | 0.813785 | 2.15E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene87622 | -0.826452 | 2.69E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene87622 | 0.884866 | 1.33E-71 | -1.69E-46 |
| MS.gene052335 | MS.gene87622 | 0.843599 | 1.27E-58 | -1.69E-46 |
| MS.gene052342 | MS.gene87622 | 0.809056 | 2.28E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene87622 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene87622 | 0.825775 | 3.90E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene87622 | 0.818957 | 1.49E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene87622 | 0.888851 | 4.09E-73 | -1.69E-46 |
| MS.gene052932 | MS.gene87622 | 0.852698 | 3.89E-61 | -1.69E-46 |
| MS.gene053079 | MS.gene87622 | 0.816356 | 5.77E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene87622 | 0.858214 | 9.61E-63 | -1.69E-46 |
| MS.gene053144 | MS.gene87622 | 0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene05315 | MS.gene87622 | 0.809129 | 2.20E-50 | -1.69E-46 |
| MS.gene053167 | MS.gene87622 | 0.821957 | 3.06E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene87622 | 0.852953 | 3.29E-61 | -1.69E-46 |
| MS.gene053786 | MS.gene87622 | 0.80617 | 9.37E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene87622 | 0.828003 | 1.14E-54 | -1.69E-46 |
| MS.gene054824 | MS.gene87622 | 0.813509 | 2.47E-51 | -1.69E-46 |
| MS.gene054943 | MS.gene87622 | 0.80914 | 2.19E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene87622 | 0.818489 | 1.91E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene87622 | 0.829105 | 6.20E-55 | -1.69E-46 |
| MS.gene055314 | MS.gene87622 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene87622 | 0.801711 | 7.91E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene87622 | 0.841281 | 5.23E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene87622 | 0.856163 | 3.87E-62 | -1.69E-46 |
| MS.gene055864 | MS.gene87622 | 0.807848 | 4.14E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene87622 | 0.818312 | 2.09E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene87622 | 0.846691 | 1.85E-59 | -1.69E-46 |
| MS.gene056308 | MS.gene87622 | 0.843411 | 1.43E-58 | -1.69E-46 |
| MS.gene056390 | MS.gene87622 | 0.82232 | 2.52E-53 | -1.69E-46 |
| MS.gene056522 | MS.gene87622 | -0.816223 | 6.18E-52 | -1.69E-46 |
| MS.gene056578 | MS.gene87622 | 0.836908 | 7.10E-57 | -1.69E-46 |
| MS.gene056677 | MS.gene87622 | 0.802443 | 5.60E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene87622 | 0.823761 | 1.16E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene87622 | 0.811992 | 5.30E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene87622 | 0.820573 | 6.39E-53 | -1.69E-46 |
| MS.gene057446 | MS.gene87622 | 0.806895 | 6.59E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene87622 | 0.822358 | 2.47E-53 | -1.69E-46 |
| MS.gene058330 | MS.gene87622 | 0.800033 | 1.74E-48 | -1.69E-46 |
| MS.gene058638 | MS.gene87622 | 0.842422 | 2.61E-58 | -1.69E-46 |
| MS.gene058639 | MS.gene87622 | 0.842525 | 2.45E-58 | -1.69E-46 |
| MS.gene058646 | MS.gene87622 | 0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene058647 | MS.gene87622 | 0.808719 | 2.70E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene87622 | 0.817017 | 4.10E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene87622 | 0.817379 | 3.40E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene87622 | 0.833573 | 4.93E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene87622 | 0.856166 | 3.87E-62 | -1.69E-46 |
| MS.gene059227 | MS.gene87622 | 0.808535 | 2.95E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene87622 | 0.826568 | 2.53E-54 | -1.69E-46 |
| MS.gene059713 | MS.gene87622 | 0.810593 | 1.07E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene87622 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene87622 | 0.808493 | 3.01E-50 | -1.69E-46 |
| MS.gene060380 | MS.gene87622 | 0.806712 | 7.20E-50 | -1.69E-46 |
| MS.gene060400 | MS.gene87622 | 0.8364 | 9.57E-57 | -1.69E-46 |
| MS.gene060563 | MS.gene87622 | 0.804773 | 1.84E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene87622 | 0.813011 | 3.18E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene87622 | 0.802278 | 6.05E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene87622 | 0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene87622 | 0.822877 | 1.87E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene87622 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene87622 | 0.820019 | 8.56E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene87622 | 0.855517 | 5.98E-62 | -1.69E-46 |
| MS.gene061100 | MS.gene87622 | 0.872473 | 3.09E-67 | -1.69E-46 |
| MS.gene061160 | MS.gene87622 | 0.800915 | 1.15E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87622.t1 | MTR_4g048320 | 99.754 | 407 | 1 | 0 | 1 | 407 | 1 | 407 | 0.0 | 847 |
| MS.gene87622.t1 | MTR_4g048320 | 99.412 | 340 | 2 | 0 | 68 | 407 | 10 | 349 | 0.0 | 707 |
| MS.gene87622.t1 | MTR_2g088270 | 79.607 | 407 | 78 | 2 | 1 | 407 | 1 | 402 | 0.0 | 681 |
| MS.gene87622.t1 | MTR_3g073370 | 63.452 | 394 | 136 | 3 | 15 | 407 | 9 | 395 | 0.0 | 529 |
| MS.gene87622.t1 | MTR_3g073370 | 63.291 | 395 | 136 | 4 | 15 | 407 | 9 | 396 | 0.0 | 525 |
| MS.gene87622.t1 | MTR_4g013305 | 61.750 | 400 | 121 | 4 | 8 | 407 | 11 | 378 | 0.0 | 520 |
| MS.gene87622.t1 | MTR_4g035490 | 54.847 | 392 | 158 | 4 | 16 | 405 | 7 | 381 | 8.22e-162 | 460 |
| MS.gene87622.t1 | MTR_5g009700 | 47.692 | 260 | 128 | 3 | 98 | 356 | 80 | 332 | 3.25e-80 | 250 |
| MS.gene87622.t1 | MTR_5g009700 | 47.431 | 253 | 125 | 3 | 105 | 356 | 1 | 246 | 1.72e-78 | 243 |
| MS.gene87622.t1 | MTR_3g090600 | 48.846 | 260 | 125 | 4 | 98 | 356 | 80 | 332 | 1.83e-78 | 246 |
| MS.gene87622.t1 | MTR_3g090600 | 48.846 | 260 | 123 | 5 | 98 | 356 | 80 | 330 | 4.96e-77 | 242 |
| MS.gene87622.t1 | MTR_1g012800 | 43.893 | 262 | 136 | 5 | 96 | 356 | 85 | 336 | 4.32e-68 | 219 |
| MS.gene87622.t1 | MTR_3g090600 | 48.085 | 235 | 111 | 5 | 98 | 328 | 80 | 307 | 1.71e-62 | 204 |
| MS.gene87622.t1 | MTR_3g090600 | 48.085 | 235 | 109 | 6 | 98 | 328 | 80 | 305 | 3.34e-61 | 200 |
| MS.gene87622.t1 | MTR_8g463930 | 35.849 | 265 | 155 | 7 | 132 | 394 | 77 | 328 | 1.03e-49 | 171 |
| MS.gene87622.t1 | MTR_2g078030 | 35.496 | 262 | 152 | 7 | 135 | 393 | 74 | 321 | 1.90e-49 | 171 |
| MS.gene87622.t1 | MTR_2g078030 | 36.842 | 228 | 134 | 5 | 135 | 360 | 74 | 293 | 1.19e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87622.t1 | AT1G05170 | 77.150 | 407 | 93 | 0 | 1 | 407 | 1 | 407 | 0.0 | 688 |
| MS.gene87622.t1 | AT2G32430 | 75.061 | 409 | 100 | 2 | 1 | 407 | 1 | 409 | 0.0 | 643 |
| MS.gene87622.t1 | AT4G26940 | 72.613 | 398 | 105 | 2 | 10 | 407 | 14 | 407 | 0.0 | 601 |
| MS.gene87622.t1 | AT1G05170 | 74.581 | 358 | 91 | 0 | 1 | 358 | 1 | 358 | 0.0 | 587 |
| MS.gene87622.t1 | AT1G11730 | 60.636 | 409 | 132 | 5 | 1 | 406 | 1 | 383 | 0.0 | 520 |
| MS.gene87622.t1 | AT1G32930 | 60.298 | 403 | 151 | 4 | 6 | 407 | 5 | 399 | 0.0 | 509 |
| MS.gene87622.t1 | AT1G77810 | 59.950 | 397 | 135 | 5 | 11 | 404 | 6 | 381 | 6.53e-177 | 498 |
| MS.gene87622.t1 | AT1G77810 | 59.500 | 400 | 135 | 6 | 11 | 404 | 6 | 384 | 1.32e-174 | 493 |
| MS.gene87622.t1 | AT1G33430 | 59.091 | 396 | 149 | 6 | 16 | 407 | 7 | 393 | 4.33e-164 | 466 |
| MS.gene87622.t1 | AT1G33430 | 57.921 | 404 | 149 | 7 | 16 | 407 | 7 | 401 | 6.78e-161 | 458 |
| MS.gene87622.t1 | AT1G22015 | 53.885 | 399 | 164 | 4 | 15 | 407 | 11 | 395 | 9.26e-156 | 445 |
| MS.gene87622.t1 | AT4G26940 | 66.052 | 271 | 89 | 1 | 10 | 280 | 14 | 281 | 7.32e-124 | 361 |
| MS.gene87622.t1 | AT1G33430 | 56.913 | 311 | 121 | 6 | 16 | 322 | 7 | 308 | 7.29e-111 | 328 |
| MS.gene87622.t1 | AT5G53340 | 45.620 | 274 | 134 | 6 | 98 | 370 | 76 | 335 | 7.20e-78 | 244 |
| MS.gene87622.t1 | AT5G53340 | 46.899 | 258 | 129 | 4 | 98 | 354 | 76 | 326 | 9.65e-78 | 244 |
| MS.gene87622.t1 | AT4G32120 | 45.802 | 262 | 130 | 6 | 96 | 356 | 85 | 335 | 2.82e-70 | 225 |
| MS.gene87622.t1 | AT2G25300 | 43.511 | 262 | 136 | 5 | 96 | 356 | 8 | 258 | 8.61e-69 | 219 |
| MS.gene87622.t1 | AT2G25300 | 43.969 | 257 | 130 | 5 | 101 | 356 | 93 | 336 | 1.04e-67 | 218 |
| MS.gene87622.t1 | AT2G26100 | 37.023 | 262 | 148 | 7 | 135 | 393 | 107 | 354 | 2.60e-51 | 176 |
| MS.gene87622.t1 | AT1G53290 | 34.601 | 263 | 155 | 7 | 135 | 394 | 83 | 331 | 6.19e-48 | 167 |
| MS.gene87622.t1 | AT3G14960 | 34.100 | 261 | 155 | 7 | 135 | 392 | 81 | 327 | 9.16e-48 | 166 |
| MS.gene87622.t1 | AT2G26100 | 37.607 | 234 | 136 | 5 | 135 | 366 | 107 | 332 | 1.99e-46 | 163 |
Find 86 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGGAGCTTGGTTTAT+TGG | 0.210268 | 4.1:-48834959 | MS.gene87622:CDS |
| TTGCCACTGCTGTGAGCTTA+TGG | 0.241789 | 4.1:-48835673 | MS.gene87622:CDS |
| CATTGGAAGTTTGGCGAGTC+TGG | 0.279395 | 4.1:-48835186 | MS.gene87622:CDS |
| TTTATGGAGTGCTTCTTTCT+AGG | 0.298948 | 4.1:-48834391 | None:intergenic |
| GAGAAGGTGAAAATGCTTTA+TGG | 0.301896 | 4.1:-48834407 | MS.gene87622:CDS |
| GAACCTGAGCATTGGAAGTT+TGG | 0.307392 | 4.1:-48835195 | MS.gene87622:CDS |
| TCCAATTTAGTTACAAGATC+TGG | 0.320538 | 4.1:-48836808 | MS.gene87622:intron |
| TGGAGTATTCCTGAACAAAA+TGG | 0.340829 | 4.1:-48836999 | MS.gene87622:CDS |
| GAAGTGTAATATCTCAGAAA+TGG | 0.343150 | 4.1:-48838045 | MS.gene87622:CDS |
| ATTGTCATGCGCTTTGTAAT+TGG | 0.344864 | 4.1:-48836266 | MS.gene87622:CDS |
| CTCCTGTTTCAGAAGATATA+AGG | 0.357539 | 4.1:-48836546 | MS.gene87622:CDS |
| CTGGAATGCTCTTCACTAAC+AGG | 0.360031 | 4.1:-48837991 | MS.gene87622:intron |
| TTGTCTTTGCTGACAATTCA+AGG | 0.362315 | 4.1:+48835705 | None:intergenic |
| TTTGTGTTGCTTCATTTGAT+TGG | 0.363073 | 4.1:-48834488 | MS.gene87622:CDS |
| GAAAAGAAGGGACTCGGTTC+GGG | 0.366676 | 4.1:-48836455 | MS.gene87622:CDS |
| TGCCACTGCTGTGAGCTTAT+GGG | 0.367282 | 4.1:-48835672 | MS.gene87622:CDS |
| TACATTGGATGCATGAAATC+TGG | 0.384729 | 4.1:-48835331 | MS.gene87622:CDS |
| GTCCTTATATCTTCTGAAAC+AGG | 0.385267 | 4.1:+48836544 | None:intergenic |
| GGAAAAGAAGGGACTCGGTT+CGG | 0.389458 | 4.1:-48836456 | MS.gene87622:CDS |
| ACTTCCAATGCTCAGGTTCA+TGG | 0.389694 | 4.1:+48835199 | None:intergenic |
| AGACCGACAGCTTCAGAAAC+TGG | 0.394152 | 4.1:-48836969 | MS.gene87622:CDS |
| CTGCTTCAATAGCTCTATCT+AGG | 0.425000 | 4.1:+48835931 | None:intergenic |
| GTACATAGAAGGTGTGGAGA+AGG | 0.442264 | 4.1:-48834423 | MS.gene87622:CDS |
| GGAGCTGCAGTGGAATTTGT+AGG | 0.445573 | 4.1:-48834467 | MS.gene87622:CDS |
| TATGTATGGTGAAGATTTCA+AGG | 0.447691 | 4.1:-48836763 | MS.gene87622:CDS |
| TTAATACTGCCTTTAGCAGC+AGG | 0.450178 | 4.1:-48836477 | MS.gene87622:CDS |
| GATGATGTTCATGTAAATAT+AGG | 0.452270 | 4.1:-48835623 | MS.gene87622:intron |
| TTTATGCAGAATCATGTTGA+AGG | 0.456059 | 4.1:-48835731 | MS.gene87622:intron |
| TCCTATTGACACATCCTCAT+TGG | 0.456204 | 4.1:+48834973 | None:intergenic |
| CTTTGCTGTGGCACTCCTCC+AGG | 0.460318 | 4.1:-48834905 | MS.gene87622:intron |
| GGATTAAAGAAGTACATAGA+AGG | 0.469286 | 4.1:-48834434 | MS.gene87622:CDS |
| GAATTTGTAGGTCCGCTGAT+AGG | 0.469957 | 4.1:-48834455 | MS.gene87622:CDS |
| CCTTTAGCAGCAGGAAAAGA+AGG | 0.471407 | 4.1:-48836468 | MS.gene87622:CDS |
| AAGTACTTCCGCCATGCCAC+AGG | 0.472843 | 4.1:-48835159 | MS.gene87622:CDS |
| AAGTGTAATATCTCAGAAAT+GGG | 0.475589 | 4.1:-48838044 | MS.gene87622:CDS |
| GGGCAAGAGAAAGTACCTTA+TGG | 0.476193 | 4.1:-48836509 | MS.gene87622:CDS |
| CTGTATTGAATGTAGAGCTT+TGG | 0.481497 | 4.1:-48836641 | MS.gene87622:intron |
| GCATGGAGATTTCTTGAGGC+TGG | 0.488147 | 4.1:-48835898 | MS.gene87622:intron |
| TGTCTCGGTAGTTTCTGTGC+TGG | 0.488168 | 4.1:-48838010 | MS.gene87622:CDS |
| TCGCCAAACTTCCAATGCTC+AGG | 0.496491 | 4.1:+48835192 | None:intergenic |
| GCCAATGAGGATGTGTCAAT+AGG | 0.497688 | 4.1:-48834974 | MS.gene87622:CDS |
| TTCAAATTTAGAGATGGACT+TGG | 0.502922 | 4.1:-48836608 | MS.gene87622:CDS |
| GAGTGCCACAGCAAAGTCTT+CGG | 0.512041 | 4.1:+48834912 | None:intergenic |
| GGGACTCGGTTCGGGCTACC+TGG | 0.512421 | 4.1:-48836447 | MS.gene87622:CDS |
| TATTAATACCTACGACCATA+AGG | 0.514517 | 4.1:+48836494 | None:intergenic |
| GATGGACTTGGCTGCTGCGA+GGG | 0.515443 | 4.1:-48836596 | MS.gene87622:CDS |
| GACTATTTCAAATTTAGAGA+TGG | 0.518519 | 4.1:-48836614 | MS.gene87622:CDS |
| TGCGAATGGAAGGCGCAAGC+AGG | 0.529852 | 4.1:-48834516 | MS.gene87622:CDS |
| TAAATTGAATGTAGTTTCTG+AGG | 0.533960 | 4.1:-48836946 | MS.gene87622:CDS |
| TCAAAACAACGGATATACAT+TGG | 0.538752 | 4.1:-48835346 | MS.gene87622:CDS |
| CAGCAGGAAAAGAAGGGACT+CGG | 0.538952 | 4.1:-48836461 | MS.gene87622:CDS |
| TATAAGGACGACTGAGTCGA+CGG | 0.542612 | 4.1:-48836530 | MS.gene87622:CDS |
| TCATTTGATTGGAGCTGCAG+TGG | 0.544715 | 4.1:-48834477 | MS.gene87622:CDS |
| CGGGCTACCTGGTTGCCACA+AGG | 0.556849 | 4.1:-48836436 | MS.gene87622:intron |
| AGGATGTGTCAATAGGAGCT+TGG | 0.557584 | 4.1:-48834967 | MS.gene87622:CDS |
| CGCGAAACTAGAGATATGTA+TGG | 0.560067 | 4.1:-48836777 | MS.gene87622:CDS |
| GATACCATGAACCTGAGCAT+TGG | 0.565176 | 4.1:-48835203 | MS.gene87622:CDS |
| AAGAAACTAGAGGAAGAGAA+AGG | 0.565582 | 4.1:-48836290 | MS.gene87622:CDS |
| TTACCAGTTTCTGAAGCTGT+CGG | 0.571354 | 4.1:+48836966 | None:intergenic |
| AGTTACAAGATCTGGAAATG+AGG | 0.572395 | 4.1:-48836800 | MS.gene87622:CDS |
| TTAACTAGTGCTACATCAGG+AGG | 0.577145 | 4.1:-48835957 | MS.gene87622:intron |
| AGATAGAGCTATTGAAGCAG+AGG | 0.580020 | 4.1:-48835928 | MS.gene87622:CDS |
| TTATGAACCTTGTGGCAACC+AGG | 0.580745 | 4.1:+48836429 | None:intergenic |
| CATACAACTGCCCTGTGGCA+TGG | 0.582197 | 4.1:+48835148 | None:intergenic |
| TTAATGACGTGGAAAAGTAG+AGG | 0.584574 | 4.1:-48838082 | MS.gene87622:CDS |
| CTTTAGCAGCAGGAAAAGAA+GGG | 0.584908 | 4.1:-48836467 | MS.gene87622:CDS |
| AAAGAAGTACATAGAAGGTG+TGG | 0.587665 | 4.1:-48834429 | MS.gene87622:CDS |
| GAAGCAGAGGACAGAAAGCA+TGG | 0.588213 | 4.1:-48835915 | MS.gene87622:CDS |
| TACTTCTTTAATCCTATCAG+CGG | 0.588432 | 4.1:+48834443 | None:intergenic |
| AAATTGAATGTAGTTTCTGA+GGG | 0.606560 | 4.1:-48836945 | MS.gene87622:CDS |
| AGAAAGTACCTTATGGTCGT+AGG | 0.607267 | 4.1:-48836502 | MS.gene87622:CDS |
| ATCCCATAAGCTCACAGCAG+TGG | 0.610258 | 4.1:+48835670 | None:intergenic |
| GAAAGCATGGAGATTTCTTG+AGG | 0.614966 | 4.1:-48835902 | MS.gene87622:CDS |
| TTGGTTTATTGGACTTGACG+TGG | 0.621784 | 4.1:-48834948 | MS.gene87622:CDS |
| AGATGGACTTGGCTGCTGCG+AGG | 0.622009 | 4.1:-48836597 | MS.gene87622:CDS |
| TGCGCTTTGTAATTGGACAC+AGG | 0.622431 | 4.1:-48836259 | MS.gene87622:intron |
| ATAAGGACGACTGAGTCGAC+GGG | 0.634555 | 4.1:-48836529 | MS.gene87622:CDS |
| AGTACTTCCGCCATGCCACA+GGG | 0.639704 | 4.1:-48835158 | MS.gene87622:CDS |
| TCTTCATAAGTATGCCAATG+AGG | 0.642056 | 4.1:-48834987 | MS.gene87622:CDS |
| TGACAAAAGAAAGAAACTAG+AGG | 0.651999 | 4.1:-48836300 | MS.gene87622:CDS |
| ATGTATGGTGAAGATTTCAA+GGG | 0.663955 | 4.1:-48836762 | MS.gene87622:CDS |
| GTTCAAGAGTCAGTACGAAG+TGG | 0.682952 | 4.1:-48836571 | MS.gene87622:CDS |
| TTAGACACCGATCAAAACAA+CGG | 0.706941 | 4.1:-48835357 | MS.gene87622:CDS |
| ACAACTGCCCTGTGGCATGG+CGG | 0.712956 | 4.1:+48835151 | None:intergenic |
| GATGACCGAAGACTTTGCTG+TGG | 0.746568 | 4.1:-48834917 | MS.gene87622:CDS |
| AATAGCATACAACTGCCCTG+TGG | 0.783392 | 4.1:+48835143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATACAAAAATAATAATAAT+TGG | + | chr4.1:48835791-48835810 | None:intergenic | 10.0% |
| !!! | AAAGTTTTTCTTTAAAAAAT+TGG | - | chr4.1:48834941-48834960 | MS.gene87622:CDS | 10.0% |
| !!! | AAGTTTTTCTTTAAAAAATT+GGG | - | chr4.1:48834942-48834961 | MS.gene87622:CDS | 10.0% |
| !!! | TTAAAGTAAAACTTTTTTAA+TGG | - | chr4.1:48835251-48835270 | MS.gene87622:intron | 10.0% |
| !!! | TTTTTAAAGAAAAACTTTTA+AGG | + | chr4.1:48834939-48834958 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTGAAGAA+CGG | - | chr4.1:48836442-48836461 | MS.gene87622:CDS | 10.0% |
| !! | AACTATTGAATATATTGTTT+GGG | - | chr4.1:48835385-48835404 | MS.gene87622:intron | 15.0% |
| !! | TAACTATTGAATATATTGTT+TGG | - | chr4.1:48835384-48835403 | MS.gene87622:intron | 15.0% |
| !! | TAATTACTGTTTATGTTAAT+TGG | - | chr4.1:48834857-48834876 | MS.gene87622:intron | 15.0% |
| !!! | AAAGTATCATTTTTTAAAAC+TGG | + | chr4.1:48836719-48836738 | None:intergenic | 15.0% |
| !!! | AAATTATTCTTTGATTTAGT+AGG | + | chr4.1:48837395-48837414 | None:intergenic | 15.0% |
| !!! | AAATTTTTTGTAATGAATCA+AGG | - | chr4.1:48837186-48837205 | MS.gene87622:intron | 15.0% |
| !!! | AATTAGTGATTTTTTTTTTG+AGG | - | chr4.1:48834564-48834583 | MS.gene87622:intron | 15.0% |
| !!! | ATTAGTGATTTTTTTTTTGA+GGG | - | chr4.1:48834565-48834584 | MS.gene87622:intron | 15.0% |
| !! | AGTTAACACTTTCAAATTAT+TGG | - | chr4.1:48837913-48837932 | MS.gene87622:intron | 20.0% |
| !! | ATAAGTTCAAATAAGTCAAT+TGG | + | chr4.1:48837656-48837675 | None:intergenic | 20.0% |
| !! | ATACAAACCTAAAAAGATAA+TGG | + | chr4.1:48837883-48837902 | None:intergenic | 20.0% |
| !! | GATTCAAAATGCTTTAATAA+AGG | - | chr4.1:48836307-48836326 | MS.gene87622:intron | 20.0% |
| !! | GTTAACACTTTCAAATTATT+GGG | - | chr4.1:48837914-48837933 | MS.gene87622:intron | 20.0% |
| !! | TATATGTATCATTTAGTAGT+AGG | - | chr4.1:48835210-48835229 | MS.gene87622:CDS | 20.0% |
| !! | TCAAACTTAAATCAAATCAA+TGG | - | chr4.1:48837416-48837435 | MS.gene87622:intron | 20.0% |
| !!! | CTATTTTATTACTAGTGTTA+CGG | - | chr4.1:48836109-48836128 | MS.gene87622:intron | 20.0% |
| !!! | TACTTTTTTTTTATCAAGCA+AGG | + | chr4.1:48835588-48835607 | None:intergenic | 20.0% |
| !!! | TCTTTAAAAAATTGGGAAAA+GGG | - | chr4.1:48834949-48834968 | MS.gene87622:CDS | 20.0% |
| !!! | TTCTTTAAAAAATTGGGAAA+AGG | - | chr4.1:48834948-48834967 | MS.gene87622:CDS | 20.0% |
| ! | AAAAGATGAGAAAAGGAAAA+TGG | + | chr4.1:48836644-48836663 | None:intergenic | 25.0% |
| ! | AAAGATGAGAAAAGGAAAAT+GGG | + | chr4.1:48836643-48836662 | None:intergenic | 25.0% |
| ! | AAATTGAATGTAGTTTCTGA+GGG | - | chr4.1:48835526-48835545 | MS.gene87622:intron | 25.0% |
| ! | AAGTCATAACTCAACTATAT+TGG | - | chr4.1:48836400-48836419 | MS.gene87622:intron | 25.0% |
| ! | AAGTGTAATATCTCAGAAAT+GGG | - | chr4.1:48834427-48834446 | MS.gene87622:CDS | 25.0% |
| ! | AATTAAGCTGTTTATCCAAA+CGG | - | chr4.1:48837856-48837875 | MS.gene87622:intron | 25.0% |
| ! | ACTTATGACTGATAAATAGA+TGG | + | chr4.1:48836384-48836403 | None:intergenic | 25.0% |
| ! | AGAAATGTTAATATCGTAAC+AGG | - | chr4.1:48835446-48835465 | MS.gene87622:intron | 25.0% |
| ! | AGTGTAAAAAATCTTTACAC+CGG | - | chr4.1:48835297-48835316 | MS.gene87622:intron | 25.0% |
| ! | ATACATATCTATAAACCAGT+AGG | - | chr4.1:48837368-48837387 | MS.gene87622:intron | 25.0% |
| ! | ATATTGTTTGGGAAATCAAT+TGG | - | chr4.1:48835396-48835415 | MS.gene87622:intron | 25.0% |
| ! | GAAAAAACGTATAATTGATC+TGG | - | chr4.1:48836480-48836499 | MS.gene87622:CDS | 25.0% |
| ! | GACTATTTCAAATTTAGAGA+TGG | - | chr4.1:48835857-48835876 | MS.gene87622:intron | 25.0% |
| ! | GATGATGTTCATGTAAATAT+AGG | - | chr4.1:48836848-48836867 | MS.gene87622:intron | 25.0% |
| ! | TAAATTGAATGTAGTTTCTG+AGG | - | chr4.1:48835525-48835544 | MS.gene87622:intron | 25.0% |
| ! | TGTTTGTATATGTTCATATC+AGG | - | chr4.1:48837456-48837475 | MS.gene87622:intron | 25.0% |
| ! | TTAGTAGTAGGTATAATTCT+TGG | - | chr4.1:48835222-48835241 | MS.gene87622:intron | 25.0% |
| !! | CTTATGTATTATGGATTAAG+TGG | - | chr4.1:48834649-48834668 | MS.gene87622:intron | 25.0% |
| !! | CTTTAAAAAATTGGGAAAAG+GGG | - | chr4.1:48834950-48834969 | MS.gene87622:CDS | 25.0% |
| !!! | ATAACTGGAATTTGTTTCTA+AGG | + | chr4.1:48835080-48835099 | None:intergenic | 25.0% |
| !!! | CTTTTGATAACATGGATAAT+AGG | - | chr4.1:48836148-48836167 | MS.gene87622:intron | 25.0% |
| !!! | GATTTGTTCTTTTGATAACA+TGG | - | chr4.1:48836140-48836159 | MS.gene87622:intron | 25.0% |
| !!! | GTATCATTTTTTAAAACTGG+TGG | + | chr4.1:48836716-48836735 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTATAAGTTTTGC+TGG | + | chr4.1:48837764-48837783 | None:intergenic | 25.0% |
| !!! | TATTAAAGCATTTTGAATCG+TGG | + | chr4.1:48836306-48836325 | None:intergenic | 25.0% |
| AAACAGTAAGTTATATGCAG+TGG | - | chr4.1:48835742-48835761 | MS.gene87622:intron | 30.0% | |
| AAACCATAGAAGCAGATATA+TGG | + | chr4.1:48836075-48836094 | None:intergenic | 30.0% | |
| AACCATAGAAGCAGATATAT+GGG | + | chr4.1:48836074-48836093 | None:intergenic | 30.0% | |
| AACCTAAATCATGGTTTGAA+CGG | + | chr4.1:48837628-48837647 | None:intergenic | 30.0% | |
| AAGATGAGAAAAGGAAAATG+GGG | + | chr4.1:48836642-48836661 | None:intergenic | 30.0% | |
| AATCAATTGGATGGTTATTG+TGG | - | chr4.1:48835409-48835428 | MS.gene87622:intron | 30.0% | |
| AATTCGAAAATTGTAAGCGT+CGG | - | chr4.1:48835553-48835572 | MS.gene87622:intron | 30.0% | |
| ACACTTTCAAATTATTGGGT+TGG | - | chr4.1:48837918-48837937 | MS.gene87622:intron | 30.0% | |
| ACATTTGCAAGAATGCTTAT+TGG | - | chr4.1:48837688-48837707 | MS.gene87622:intron | 30.0% | |
| ACTGCATATAACTTACTGTT+TGG | + | chr4.1:48835743-48835762 | None:intergenic | 30.0% | |
| AGATCTTGTAACTAAATTGG+AGG | + | chr4.1:48835664-48835683 | None:intergenic | 30.0% | |
| ATGTATGGTGAAGATTTCAA+GGG | - | chr4.1:48835709-48835728 | MS.gene87622:CDS | 30.0% | |
| ATTAAGCTGTTTATCCAAAC+GGG | - | chr4.1:48837857-48837876 | MS.gene87622:intron | 30.0% | |
| CTCATAAAACAGAGAAAACA+GGG | + | chr4.1:48834518-48834537 | None:intergenic | 30.0% | |
| GAAGTGTAATATCTCAGAAA+TGG | - | chr4.1:48834426-48834445 | MS.gene87622:CDS | 30.0% | |
| GATTAAGTGGAATTAGATCT+GGG | - | chr4.1:48834662-48834681 | MS.gene87622:intron | 30.0% | |
| GTATTGCAAAAGATGAGAAA+AGG | + | chr4.1:48836651-48836670 | None:intergenic | 30.0% | |
| GTTAATATCGTAACAGGATA+TGG | - | chr4.1:48835452-48835471 | MS.gene87622:intron | 30.0% | |
| TACTTCTTTAATCCTATCAG+CGG | + | chr4.1:48838031-48838050 | None:intergenic | 30.0% | |
| TATGCATAAGCATAACAACT+TGG | - | chr4.1:48836908-48836927 | MS.gene87622:intron | 30.0% | |
| TATGTATGGTGAAGATTTCA+AGG | - | chr4.1:48835708-48835727 | MS.gene87622:CDS | 30.0% | |
| TATTAATACCTACGACCATA+AGG | + | chr4.1:48835980-48835999 | None:intergenic | 30.0% | |
| TCAAAACAACGGATATACAT+TGG | - | chr4.1:48837125-48837144 | MS.gene87622:intron | 30.0% | |
| TCCAATTTAGTTACAAGATC+TGG | - | chr4.1:48835663-48835682 | MS.gene87622:CDS | 30.0% | |
| TCCAGATCTTGTAACTAAAT+TGG | + | chr4.1:48835667-48835686 | None:intergenic | 30.0% | |
| TCTCATAAAACAGAGAAAAC+AGG | + | chr4.1:48834519-48834538 | None:intergenic | 30.0% | |
| TGACAAAAGAAAGAAACTAG+AGG | - | chr4.1:48836171-48836190 | MS.gene87622:intron | 30.0% | |
| TTCAAGAACAAATATTCACC+TGG | + | chr4.1:48837587-48837606 | None:intergenic | 30.0% | |
| TTTATGCAGAATCATGTTGA+AGG | - | chr4.1:48836740-48836759 | MS.gene87622:intron | 30.0% | |
| ! | CAACGATTTTGTTGCATAAT+TGG | - | chr4.1:48836253-48836272 | MS.gene87622:intron | 30.0% |
| ! | CTGTTTTATGAGACTTTGTT+TGG | - | chr4.1:48834526-48834545 | MS.gene87622:intron | 30.0% |
| ! | GCTATTTCGCTTATGTATTA+TGG | - | chr4.1:48834640-48834659 | MS.gene87622:intron | 30.0% |
| ! | GGAAGTAAGTTGAAAACTTA+TGG | + | chr4.1:48837732-48837751 | None:intergenic | 30.0% |
| ! | GGATTAAAGAAGTACATAGA+AGG | - | chr4.1:48838037-48838056 | MS.gene87622:CDS | 30.0% |
| ! | TTATGTTTTCAGATTGCGAA+TGG | - | chr4.1:48837941-48837960 | MS.gene87622:intron | 30.0% |
| ! | TTCAAATTTAGAGATGGACT+TGG | - | chr4.1:48835863-48835882 | MS.gene87622:intron | 30.0% |
| !! | TTTGTGTTGCTTCATTTGAT+TGG | - | chr4.1:48837983-48838002 | MS.gene87622:intron | 30.0% |
| !! | TTTTTAACTAGTGCTACATC+AGG | - | chr4.1:48836511-48836530 | MS.gene87622:CDS | 30.0% |
| !!! | AAATTTCTCACTTTTGAGAC+AGG | + | chr4.1:48837172-48837191 | None:intergenic | 30.0% |
| !!! | CAATCTTTTTCAGCAACATT+GGG | - | chr4.1:48837080-48837099 | MS.gene87622:intron | 30.0% |
| !!! | TCAATCTTTTTCAGCAACAT+TGG | - | chr4.1:48837079-48837098 | MS.gene87622:intron | 30.0% |
| !!! | TGTATATCCGTTGTTTTGAT+CGG | + | chr4.1:48837124-48837143 | None:intergenic | 30.0% |
| AAAAAATACACTCCACCAAC+CGG | + | chr4.1:48835128-48835147 | None:intergenic | 35.0% | |
| AAGAAACTAGAGGAAGAGAA+AGG | - | chr4.1:48836181-48836200 | MS.gene87622:intron | 35.0% | |
| AAGAACAAATATTCACCTGG+AGG | + | chr4.1:48837584-48837603 | None:intergenic | 35.0% | |
| AATTAAGTCACATACACCTC+CGG | + | chr4.1:48835319-48835338 | None:intergenic | 35.0% | |
| ACAGCACATTTGCATTAGTT+TGG | + | chr4.1:48835814-48835833 | None:intergenic | 35.0% | |
| ACCTAAATCATGGTTTGAAC+GGG | + | chr4.1:48837627-48837646 | None:intergenic | 35.0% | |
| AGTTACAAGATCTGGAAATG+AGG | - | chr4.1:48835671-48835690 | MS.gene87622:CDS | 35.0% | |
| ATCCCATATATCTGCTTCTA+TGG | - | chr4.1:48836069-48836088 | MS.gene87622:intron | 35.0% | |
| ATCTGCCTTCTTCTTTATTC+CGG | - | chr4.1:48835106-48835125 | MS.gene87622:intron | 35.0% | |
| ATTGTCATGCGCTTTGTAAT+TGG | - | chr4.1:48836205-48836224 | MS.gene87622:intron | 35.0% | |
| CTCCTGTTTCAGAAGATATA+AGG | - | chr4.1:48835925-48835944 | MS.gene87622:CDS | 35.0% | |
| CTGTATTGAATGTAGAGCTT+TGG | - | chr4.1:48835830-48835849 | MS.gene87622:intron | 35.0% | |
| GAGAAGGTGAAAATGCTTTA+TGG | - | chr4.1:48838064-48838083 | MS.gene87622:CDS | 35.0% | |
| GAGCAGGATATTAAGACAAA+AGG | + | chr4.1:48837061-48837080 | None:intergenic | 35.0% | |
| GGATCAAATTATGAACCTTG+TGG | + | chr4.1:48836053-48836072 | None:intergenic | 35.0% | |
| GGATTAAGTGGAATTAGATC+TGG | - | chr4.1:48834661-48834680 | MS.gene87622:intron | 35.0% | |
| GTAAAAAATCTTTACACCGG+AGG | - | chr4.1:48835300-48835319 | MS.gene87622:intron | 35.0% | |
| TACATTGGATGCATGAAATC+TGG | - | chr4.1:48837140-48837159 | MS.gene87622:intron | 35.0% | |
| TCAATAGGAGCTTGGTTTAT+TGG | - | chr4.1:48837512-48837531 | MS.gene87622:intron | 35.0% | |
| TCTTCATAAGTATGCCAATG+AGG | - | chr4.1:48837484-48837503 | MS.gene87622:intron | 35.0% | |
| TGTTTGGGAAATCAATTGGA+TGG | - | chr4.1:48835400-48835419 | MS.gene87622:intron | 35.0% | |
| TTAGACACCGATCAAAACAA+CGG | - | chr4.1:48837114-48837133 | MS.gene87622:intron | 35.0% | |
| TTGGAACAGAACCTAAATCA+TGG | + | chr4.1:48837637-48837656 | None:intergenic | 35.0% | |
| TTGTCTTTGCTGACAATTCA+AGG | + | chr4.1:48836769-48836788 | None:intergenic | 35.0% | |
| ! | AAACGGGCCATTATCTTTTT+AGG | - | chr4.1:48837873-48837892 | MS.gene87622:intron | 35.0% |
| ! | AAAGAAGTACATAGAAGGTG+TGG | - | chr4.1:48838042-48838061 | MS.gene87622:CDS | 35.0% |
| ! | AGTTTGACTTTGTAACCTCA+AGG | + | chr4.1:48835049-48835068 | None:intergenic | 35.0% |
| ! | GTTTGACTTTGTAACCTCAA+GGG | + | chr4.1:48835048-48835067 | None:intergenic | 35.0% |
| ! | TAAAAAGATAATGGCCCGTT+TGG | + | chr4.1:48837874-48837893 | None:intergenic | 35.0% |
| ! | TGGAGTATTCCTGAACAAAA+TGG | - | chr4.1:48835472-48835491 | MS.gene87622:intron | 35.0% |
| ! | TGTTCTTTTCTTGTGTCTGT+TGG | - | chr4.1:48835638-48835657 | MS.gene87622:CDS | 35.0% |
| ! | TTTGATTTAGTAGGACCTAC+TGG | + | chr4.1:48837386-48837405 | None:intergenic | 35.0% |
| !! | GACACTGTCATTGCTTTTAA+AGG | - | chr4.1:48836674-48836693 | MS.gene87622:intron | 35.0% |
| !! | GTCCTTATATCTTCTGAAAC+AGG | + | chr4.1:48835930-48835949 | None:intergenic | 35.0% |
| !! | GTTTCTACATCGTGTTTTTG+AGG | - | chr4.1:48836275-48836294 | MS.gene87622:CDS | 35.0% |
| !!! | GCTGTTTTTGAAGTAAGAGA+GGG | - | chr4.1:48834829-48834848 | MS.gene87622:intron | 35.0% |
| !!! | TGCTGTTTTTGAAGTAAGAG+AGG | - | chr4.1:48834828-48834847 | MS.gene87622:intron | 35.0% |
| AAGGCAGATCTGCAAATAAC+TGG | + | chr4.1:48835095-48835114 | None:intergenic | 40.0% | |
| ACCAACCGGAATAAAGAAGA+AGG | + | chr4.1:48835114-48835133 | None:intergenic | 40.0% | |
| ACCCGTTCAAACCATGATTT+AGG | - | chr4.1:48837623-48837642 | MS.gene87622:intron | 40.0% | |
| AGATAGAGCTATTGAAGCAG+AGG | - | chr4.1:48836543-48836562 | MS.gene87622:CDS | 40.0% | |
| CGCGAAACTAGAGATATGTA+TGG | - | chr4.1:48835694-48835713 | MS.gene87622:CDS | 40.0% | |
| CTTTAGCAGCAGGAAAAGAA+GGG | - | chr4.1:48836004-48836023 | MS.gene87622:intron | 40.0% | |
| GTTGCTGAAAAAGATTGAGC+AGG | + | chr4.1:48837077-48837096 | None:intergenic | 40.0% | |
| TCCTATTGACACATCCTCAT+TGG | + | chr4.1:48837501-48837520 | None:intergenic | 40.0% | |
| TGAGAAAAGGAAAATGGGGT+AGG | + | chr4.1:48836638-48836657 | None:intergenic | 40.0% | |
| TTAACTAGTGCTACATCAGG+AGG | - | chr4.1:48836514-48836533 | MS.gene87622:CDS | 40.0% | |
| TTAATACTGCCTTTAGCAGC+AGG | - | chr4.1:48835994-48836013 | MS.gene87622:intron | 40.0% | |
| TTCTTACCTTGTTGCACAGA+GGG | - | chr4.1:48837241-48837260 | MS.gene87622:intron | 40.0% | |
| TTCTTCTTTATTCCGGTTGG+TGG | - | chr4.1:48835113-48835132 | MS.gene87622:CDS | 40.0% | |
| TTGGACTTGCGATTACATCA+TGG | + | chr4.1:48835772-48835791 | None:intergenic | 40.0% | |
| TTGGTTTATTGGACTTGACG+TGG | - | chr4.1:48837523-48837542 | MS.gene87622:intron | 40.0% | |
| ! | AAGTTTTGCTGGAGAGCTAA+TGG | + | chr4.1:48837753-48837772 | None:intergenic | 40.0% |
| ! | CTGCTTCAATAGCTCTATCT+AGG | + | chr4.1:48836543-48836562 | None:intergenic | 40.0% |
| ! | CTTGCAAGTCCATTTTGTTC+AGG | + | chr4.1:48835484-48835503 | None:intergenic | 40.0% |
| ! | GAAAGCATGGAGATTTCTTG+AGG | - | chr4.1:48836569-48836588 | MS.gene87622:CDS | 40.0% |
| ! | GTTTTCAGATTGCGAATGGA+AGG | - | chr4.1:48837945-48837964 | MS.gene87622:intron | 40.0% |
| !! | AGAAAGTACCTTATGGTCGT+AGG | - | chr4.1:48835969-48835988 | MS.gene87622:intron | 40.0% |
| !! | TTACCAGTTTCTGAAGCTGT+CGG | + | chr4.1:48835508-48835527 | None:intergenic | 40.0% |
| !!! | TGGGCACTTTTTCTTTGTCT+CGG | - | chr4.1:48834446-48834465 | MS.gene87622:CDS | 40.0% |
| AATAGCATACAACTGCCCTG+TGG | + | chr4.1:48837331-48837350 | None:intergenic | 45.0% | |
| AATTTGAACTCCGTCCCTTG+AGG | - | chr4.1:48835031-48835050 | MS.gene87622:intron | 45.0% | |
| ACGGAGTTCAAATTCTCTCG+GGG | + | chr4.1:48835025-48835044 | None:intergenic | 45.0% | |
| ACTTCCAATGCTCAGGTTCA+TGG | + | chr4.1:48837275-48837294 | None:intergenic | 45.0% | |
| AGGATGTGTCAATAGGAGCT+TGG | - | chr4.1:48837504-48837523 | MS.gene87622:intron | 45.0% | |
| CCTTTAGCAGCAGGAAAAGA+AGG | - | chr4.1:48836003-48836022 | MS.gene87622:intron | 45.0% | |
| CTCTGTGCAACAAGGTAAGA+AGG | + | chr4.1:48837242-48837261 | None:intergenic | 45.0% | |
| CTGGAATGCTCTTCACTAAC+AGG | - | chr4.1:48834480-48834499 | MS.gene87622:CDS | 45.0% | |
| CTTCTTACCTTGTTGCACAG+AGG | - | chr4.1:48837240-48837259 | MS.gene87622:intron | 45.0% | |
| GAATTTGTAGGTCCGCTGAT+AGG | - | chr4.1:48838016-48838035 | MS.gene87622:CDS | 45.0% | |
| GACGGAGTTCAAATTCTCTC+GGG | + | chr4.1:48835026-48835045 | None:intergenic | 45.0% | |
| GACTTTGTAACCTCAAGGGA+CGG | + | chr4.1:48835044-48835063 | None:intergenic | 45.0% | |
| GATACCATGAACCTGAGCAT+TGG | - | chr4.1:48837268-48837287 | MS.gene87622:intron | 45.0% | |
| GCCAATGAGGATGTGTCAAT+AGG | - | chr4.1:48837497-48837516 | MS.gene87622:intron | 45.0% | |
| GCCTTCTTCTTTATTCCGGT+TGG | - | chr4.1:48835110-48835129 | MS.gene87622:CDS | 45.0% | |
| GGACGGAGTTCAAATTCTCT+CGG | + | chr4.1:48835027-48835046 | None:intergenic | 45.0% | |
| GTTCAAGAGTCAGTACGAAG+TGG | - | chr4.1:48835900-48835919 | MS.gene87622:CDS | 45.0% | |
| TATAAGGACGACTGAGTCGA+CGG | - | chr4.1:48835941-48835960 | MS.gene87622:CDS | 45.0% | |
| TCATTTGATTGGAGCTGCAG+TGG | - | chr4.1:48837994-48838013 | MS.gene87622:CDS | 45.0% | |
| TCTTACCTTGTTGCACAGAG+GGG | - | chr4.1:48837242-48837261 | MS.gene87622:intron | 45.0% | |
| TGCGCTTTGTAATTGGACAC+AGG | - | chr4.1:48836212-48836231 | MS.gene87622:intron | 45.0% | |
| TTATGAACCTTGTGGCAACC+AGG | + | chr4.1:48836045-48836064 | None:intergenic | 45.0% | |
| ! | CCTTCTTTTCCTGCTGCTAA+AGG | + | chr4.1:48836006-48836025 | None:intergenic | 45.0% |
| ! | GTACATAGAAGGTGTGGAGA+AGG | - | chr4.1:48838048-48838067 | MS.gene87622:CDS | 45.0% |
| !! | GAACCTGAGCATTGGAAGTT+TGG | - | chr4.1:48837276-48837295 | MS.gene87622:intron | 45.0% |
| !! | GGGCAAGAGAAAGTACCTTA+TGG | - | chr4.1:48835962-48835981 | MS.gene87622:intron | 45.0% |
| !!! | TCTCACTTTTGAGACAGGAC+AGG | + | chr4.1:48837167-48837186 | None:intergenic | 45.0% |
| AGACCGACAGCTTCAGAAAC+TGG | - | chr4.1:48835502-48835521 | MS.gene87622:intron | 50.0% | |
| ATAAGGACGACTGAGTCGAC+GGG | - | chr4.1:48835942-48835961 | MS.gene87622:CDS | 50.0% | |
| ATCCCATAAGCTCACAGCAG+TGG | + | chr4.1:48836804-48836823 | None:intergenic | 50.0% | |
| CAGCAGGAAAAGAAGGGACT+CGG | - | chr4.1:48836010-48836029 | MS.gene87622:intron | 50.0% | |
| CATTGGAAGTTTGGCGAGTC+TGG | - | chr4.1:48837285-48837304 | MS.gene87622:intron | 50.0% | |
| GAAGCAGAGGACAGAAAGCA+TGG | - | chr4.1:48836556-48836575 | MS.gene87622:CDS | 50.0% | |
| GAGTGCCACAGCAAAGTCTT+CGG | + | chr4.1:48837562-48837581 | None:intergenic | 50.0% | |
| GATGACCGAAGACTTTGCTG+TGG | - | chr4.1:48837554-48837573 | MS.gene87622:intron | 50.0% | |
| GCATGGAGATTTCTTGAGGC+TGG | - | chr4.1:48836573-48836592 | MS.gene87622:CDS | 50.0% | |
| GGAGCTGCAGTGGAATTTGT+AGG | - | chr4.1:48838004-48838023 | MS.gene87622:CDS | 50.0% | |
| TCGCCAAACTTCCAATGCTC+AGG | + | chr4.1:48837282-48837301 | None:intergenic | 50.0% | |
| TCTTACCCCTCTGTGCAACA+AGG | + | chr4.1:48837250-48837269 | None:intergenic | 50.0% | |
| TGCCACTGCTGTGAGCTTAT+GGG | - | chr4.1:48836799-48836818 | MS.gene87622:CDS | 50.0% | |
| TGTCTCGGTAGTTTCTGTGC+TGG | - | chr4.1:48834461-48834480 | MS.gene87622:CDS | 50.0% | |
| TTGCCACTGCTGTGAGCTTA+TGG | - | chr4.1:48836798-48836817 | MS.gene87622:CDS | 50.0% | |
| ! | GAAAAGAAGGGACTCGGTTC+GGG | - | chr4.1:48836016-48836035 | MS.gene87622:intron | 50.0% |
| ! | GGAAAAGAAGGGACTCGGTT+CGG | - | chr4.1:48836015-48836034 | MS.gene87622:intron | 50.0% |
| AAGTACTTCCGCCATGCCAC+AGG | - | chr4.1:48837312-48837331 | MS.gene87622:intron | 55.0% | |
| AGTACTTCCGCCATGCCACA+GGG | - | chr4.1:48837313-48837332 | MS.gene87622:intron | 55.0% | |
| CATACAACTGCCCTGTGGCA+TGG | + | chr4.1:48837326-48837345 | None:intergenic | 55.0% | |
| ACAACTGCCCTGTGGCATGG+CGG | + | chr4.1:48837323-48837342 | None:intergenic | 60.0% | |
| ! | AGATGGACTTGGCTGCTGCG+AGG | - | chr4.1:48835874-48835893 | MS.gene87622:intron | 60.0% |
| ! | CTTTGCTGTGGCACTCCTCC+AGG | - | chr4.1:48837566-48837585 | MS.gene87622:intron | 60.0% |
| ! | GATGGACTTGGCTGCTGCGA+GGG | - | chr4.1:48835875-48835894 | MS.gene87622:intron | 60.0% |
| ! | TGCGAATGGAAGGCGCAAGC+AGG | - | chr4.1:48837955-48837974 | MS.gene87622:intron | 60.0% |
| CGGGCTACCTGGTTGCCACA+AGG | - | chr4.1:48836035-48836054 | MS.gene87622:intron | 65.0% | |
| !! | GGGACTCGGTTCGGGCTACC+TGG | - | chr4.1:48836024-48836043 | MS.gene87622:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 48834392 | 48838101 | 48834392 | ID=MS.gene87622 |
| chr4.1 | mRNA | 48834392 | 48838101 | 48834392 | ID=MS.gene87622.t1;Parent=MS.gene87622 |
| chr4.1 | exon | 48837992 | 48838101 | 48837992 | ID=MS.gene87622.t1.exon1;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48837992 | 48838101 | 48837992 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48836929 | 48837025 | 48836929 | ID=MS.gene87622.t1.exon2;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48836929 | 48837025 | 48836929 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48836747 | 48836820 | 48836747 | ID=MS.gene87622.t1.exon3;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48836747 | 48836820 | 48836747 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48836437 | 48836648 | 48836437 | ID=MS.gene87622.t1.exon4;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48836437 | 48836648 | 48836437 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48836260 | 48836323 | 48836260 | ID=MS.gene87622.t1.exon5;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48836260 | 48836323 | 48836260 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48835899 | 48835971 | 48835899 | ID=MS.gene87622.t1.exon6;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48835899 | 48835971 | 48835899 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48835624 | 48835744 | 48835624 | ID=MS.gene87622.t1.exon7;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48835624 | 48835744 | 48835624 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48835313 | 48835400 | 48835313 | ID=MS.gene87622.t1.exon8;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48835313 | 48835400 | 48835313 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48835108 | 48835233 | 48835108 | ID=MS.gene87622.t1.exon9;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48835108 | 48835233 | 48835108 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48834906 | 48835015 | 48834906 | ID=MS.gene87622.t1.exon10;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48834906 | 48835015 | 48834906 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| chr4.1 | exon | 48834392 | 48834540 | 48834392 | ID=MS.gene87622.t1.exon11;Parent=MS.gene87622.t1 |
| chr4.1 | CDS | 48834392 | 48834540 | 48834392 | ID=cds.MS.gene87622.t1;Parent=MS.gene87622.t1 |
| Gene Sequence |
| Protein sequence |
