AlfalfaGEDB | MS.gene96322

M. sativa cultivar XinJiangDaYe / MS.gene96322

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF05022.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96322.t1	XP_003610031.2	80	414	79	1	1	414	1	410	2.60E-115	425.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96322.t1	E9Q5C9	51.4	74	35	1	336	409	628	700	5.4e-13	77.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96322.t1	G7JTA4	80.0	414	79	1	1	414	1	410	1.9e-115	425.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene96322	0.851552	8.24E-61	-1.69E-46
MS.gene049341	MS.gene96322	0.822256	2.61E-53	-1.69E-46
MS.gene049580	MS.gene96322	0.804126	2.51E-49	-1.69E-46
MS.gene049756	MS.gene96322	0.802957	4.38E-49	-1.69E-46
MS.gene049821	MS.gene96322	0.801236	9.91E-49	-1.69E-46
MS.gene049824	MS.gene96322	0.856225	3.71E-62	-1.69E-46
MS.gene049825	MS.gene96322	0.866369	3.00E-65	-1.69E-46
MS.gene049873	MS.gene96322	0.857257	1.85E-62	-1.69E-46
MS.gene050277	MS.gene96322	0.881519	2.24E-70	-1.69E-46
MS.gene050303	MS.gene96322	0.871227	8.03E-67	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96322.t1	MTR_4g127160	94.203	414	20	1	1	414	1	410	0.0	697
MS.gene96322.t1	MTR_4g127160	93.623	345	18	1	70	414	1	341	0.0	559

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96322.t1	AT5G57120	52.518	139	52	3	283	414	168	299	1.25e-32	125

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Find 81 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATAAAGAATCATCTG+AGG	0.668418	8.3:+3824532	MS.gene96322:CDS
AAACGGGCTTTCTGAGAATG+GGG	0.639535	8.3:+3824475	MS.gene96322:CDS
AAACGTGGGACCTATAGGGG+TGG	0.658830	8.3:+3826826	MS.gene96322:CDS
AAAGATAAGTCAACTAGTGA+AGG	0.522771	8.3:+3824248	MS.gene96322:CDS
AACAATAAGTCAAATATTGA+AGG	0.491836	8.3:+3824107	MS.gene96322:CDS
AAGAAACGTGGGACCTATAG+GGG	0.566821	8.3:+3826823	MS.gene96322:CDS
AAGATAAGTCAACTAGTGAA+GGG	0.563861	8.3:+3824249	MS.gene96322:CDS
AAGTAGAATTTGTTGATGAG+AGG	0.558430	8.3:+3826191	MS.gene96322:CDS
AATAAGTCAAATATTGAAGG+GGG	0.651885	8.3:+3824110	MS.gene96322:CDS
AATAATTAAACTTAACTGAG+TGG	0.520249	8.3:-3826867	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATAAGTCAACTAGTGA+AGG	+	chr8.3:3824248-3824267	MS.gene96322:CDS	30.0%
AAATGATGAGGAAAAATCCA+AGG	+	chr8.3:3823905-3823924	MS.gene96322:CDS	30.0%
AAATGCTATAGCAAGATCAT+AGG	-	chr8.3:3823497-3823516	None:intergenic	30.0%
AAGATAAGTCAACTAGTGAA+GGG	+	chr8.3:3824249-3824268	MS.gene96322:CDS	30.0%
AATGACAATACTAATTGGTG+TGG	-	chr8.3:3823611-3823630	None:intergenic	30.0%
AATGATGAGGAAAAATCCAA+GGG	+	chr8.3:3823906-3823925	MS.gene96322:CDS	30.0%
AATTACACCCTTTATAATCC+TGG	+	chr8.3:3824782-3824801	MS.gene96322:intron	30.0%
AATTTCGAAGCAAAAAAGGT+TGG	+	chr8.3:3824950-3824969	MS.gene96322:intron	30.0%
ACACAATAACCTGAAATGTT+AGG	-	chr8.3:3825849-3825868	None:intergenic	30.0%
ACACCAAATATTTCTCTTAC+AGG	+	chr8.3:3826776-3826795	MS.gene96322:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	3821299	3826903	3821299	ID=MS.gene96322
chr8.3	mRNA	3821299	3826903	3821299	ID=MS.gene96322.t1;Parent=MS.gene96322
chr8.3	exon	3821299	3821511	3821299	ID=MS.gene96322.t1.exon1;Parent=MS.gene96322.t1
chr8.3	CDS	3821299	3821511	3821299	ID=cds.MS.gene96322.t1;Parent=MS.gene96322.t1
chr8.3	exon	3822950	3823014	3822950	ID=MS.gene96322.t1.exon2;Parent=MS.gene96322.t1
chr8.3	CDS	3822950	3823014	3822950	ID=cds.MS.gene96322.t1;Parent=MS.gene96322.t1
chr8.3	exon	3823688	3823731	3823688	ID=MS.gene96322.t1.exon3;Parent=MS.gene96322.t1
chr8.3	CDS	3823688	3823731	3823688	ID=cds.MS.gene96322.t1;Parent=MS.gene96322.t1
chr8.3	exon	3823892	3824553	3823892	ID=MS.gene96322.t1.exon4;Parent=MS.gene96322.t1
chr8.3	CDS	3823892	3824553	3823892	ID=cds.MS.gene96322.t1;Parent=MS.gene96322.t1
chr8.3	exon	3826148	3826240	3826148	ID=MS.gene96322.t1.exon5;Parent=MS.gene96322.t1
chr8.3	CDS	3826148	3826240	3826148	ID=cds.MS.gene96322.t1;Parent=MS.gene96322.t1
chr8.3	exon	3826327	3826388	3826327	ID=MS.gene96322.t1.exon6;Parent=MS.gene96322.t1
chr8.3	CDS	3826327	3826388	3826327	ID=cds.MS.gene96322.t1;Parent=MS.gene96322.t1
chr8.3	exon	3826798	3826903	3826798	ID=MS.gene96322.t1.exon7;Parent=MS.gene96322.t1
chr8.3	CDS	3826798	3826903	3826798	ID=cds.MS.gene96322.t1;Parent=MS.gene96322.t1

Gene Sequence

>MS.gene96322

ATGCCTGCAAATCCATCAGGTATCAAAAGAATTCCAACCCTCTTCACTTTCACTCCTCGTCAAGTTTTGTTAAGCAATCGAACCATGAAGAACGGAACCCAAAACTCTGAACAGAAGCAGAAGCTTCTTCTGAACCAATCAATTGCTCTTTACTTGGAACGCTCGGGATTCTCCAAAACCCTCAAAAAGTTTCTCTCTGAAGCTAAAATTGAGGTGGGTCACTTTCCATTCATTCGTTTGGACACTGTTTTTGATAAAGTTTACATTTTTTTGTTATACGTAGAATATTGTATAATTGTAATGTTGCTTTTGGAGATGTTTTTTCATTGTTTTTCTGCTAGGAATGTTGTATTTGTAGTTTGTAGAAGCATCTCGATTGAATTTAGGATCTGTTTGGATTGGCTTAGTTGAGCTTACATACTCATATACACATCTGTGAAACTGCTTGGAAGAGCTTATGGAAACAGTTTATGACGTGTCCATAAGCTGCCTTCAGCTTATTTTCATAAGATTTCCGAAATAGCTCATGTAAACAGCTTATAGCTAATGTGAAAAAGGATATCACTTTGGTGACTTTAGTATATTAAGAGGATGGATAAATGATTAAAATAAATTATCCAGACAAGAGAGAATGATCGGTTGAGAGCTTATCAATTAAAATCAAGTCTATGATTCTTCATTCATGAAAAAAGTTCGGTATGTTTATAATTGTTTACATTTTTATGAAGAATTTAATTTTAACAGCAGAGTTTCTTAAAAATTCATGGGTTAAATATGTTTTTGGTCCCTATAAATATGTCAACTTTTAGTTTTGGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCCTATAAAATTTTCAATCACTACTTTTGGTCCCTATTTTTAATTTAAATTTGTATTTTTTAATGAAGTTGTGCAGAAATGTGTAAAATATTCTAAAAAAAATTCCTAAAAAAAATTAGAATTTTTTAACAAAACACAAATTAAATATGAATTTTTAACTGTAAACAATATAAAAATTCATATTAAATTCATGTTTTGTTAAAAAATTCTGAATTTTTTTTGGAGTGATTCTTATAATATTTTGAATTTTTCTGGAAAATTTTATTAAATAATATGAATTCTACATATGAGTTTACTTTAAAAGAGGGACCAAAAGTGAAGATTGAAAATTTTATAGGGACTAAAAGTTGAAGAAAAATTTTAGAGGGACTAAAACGAAAAGTTGACATATTTATAGGGACCAAAAACATATTTAACCCAAAATTCATTGCGGTGCTGAGGCTAATTTCATCTTATACGAGAAGCTCTTGTTTAATAAATTTACAGTTATTGAAAAAATCTTTTAATATTTTTTTTTAATCTTTTAATATTTATTTTGCCATATATTTGCATTGCGAATGTCATCTAAATTGAGGTCATTACGTCTTTTAAAATTTTCAAACCAAACTGAGTAAAACAGATTCTTGCTTATGATTGTTTAAGTAATTATGTGCATACATGGCAAAAGGAATGCTGTATGCTGTGCTTTCATATATAGACCAGAATTCCTCTGTATTCCATATCCGTGTCTTCCTTCTCACCGTTCAATAACAAATTTGGCTGGATTGTTCTTCTGTTTTACATTGTTGCTCCTTTTGTTGATGCAGAACGATAATACAGAGGGTTCCACAGTGGATCTAGAAGAGATGTGCCGCAAATATTTGGAAACATGGTAAGACCCAACCTTAGCCTTGTTCTACACTTTCAAGATTTTGGAGTAAAAAACCGATTATAAACTACACAGTACACACTGCCTAATCCTGTAAACTGTACACTGACAAGATTTTGCCACTAGTGCAAAACTGTTCTTAGTTTCTATTTCTATGTATAAAGTACAGTGTGACTGGCCATTGTCTCATGTTGTTGGGGATCCATGTATCAACCATATCAATTACTAGATAGAAAGCTTGGACCAGTCATAATTGTTAGTAGCACACTATAGCAGTGAAAAGTAGCAGTTGGCCGCTATAAAATTTTCATACTGTGGCATATTGGCAATTTTATGTAGCGGTTGTTGCTTAAAACAATTTTCTATGGCGGCTGACACAGAATTCACTACGTCATTCCGCCATGGCTGCTATTTTACAGCATTTTATAGTATGGATTATTTATCCTACATTTGTATTCTTCAGACCAGCAGTTATCCCACTACCTATGATCTTGCTATAGCATTTGTGGGGTTGGCTGTTCTGCATCACAATCTGATATTGAGAACTATGGGAGGAATAATTGAAAGTTGCAATCTCACTTGTCTAATTGATGCTGCCACACCAATTAGTATTGTCATTTCTGTCTTGTTTATATGCTAATTGAGCTTTTTGTTCTTGTTTTTCATCTCTCTTCAGTAGCAAGGATGCTAAGTCAACTATCAATGATCAAAAAGCGCAAGGTATGCTTTTAAATCCTTGAAAACCTATCTCTCTTGTTTATAACATCGAATTATTTATTTTTTCTAAGGGTCAGATGTTTCTTGCATATCTCATTCTCTTGCTTCTTGAATCGTGGCGATTAAATCTTAATGGTGGCTTTTCAATTACTGCTAATTGCAGGTGTGGACTCCAAAAATGATGAGGAAAAATCCAAGGGAAAAAAGAAAAAGAAAAGCAACGTAGTTTCTGAATCTGTTGTTGATAATGTGGAAGACAACCAATTGGAGTCACCAACTGTGGTTACAGAAAACAAAGTTAAGGATGATTTATCTACAGATGCCAAAGTTGATAATGGTGCTGAGACAGAGAAACGGTCCAAACCCAAAAAGAAAAAGAACAATAAGTCAAATATTGAAGGGGGTGCAATAGAGCAGAATGCAGTTACAGAAAATAAAGTTAAGGATGATTTATCCATAGATGCCAAAGTTGAAAATGGTGCTGAGACAGAGAAGAGGTCCAAACGTAAAATGAAAAAGAAAGATAAGTCAACTAGTGAAGGGGATGCAAAAGAGCAGATTGGAGACCCCGATGCAACAAATGAAGAAGCAACGCCCGAAGAGAAGAAAGATTCTAAAAAAAGAAAGCGACCAATTTCTAAAGAAAATGGTGAACAAGATACCGAAATAAAGGCAGATGAAGAAACCAAACGCAGGAAAATAGAAAATATGAGTGAATCTAAGGGAGGAGACCAATCAGCAAAATCAAACGGGCTTTCTGAGAATGGGGAAGAAAATTCTTCTGTGCAAAAGTCTCAGAAGAAAAAACATAAAGAATCATCTGAGGTATGCAATAACTAGTATTTATTCTCTCTGAACTAGTATTTATTCTCTCTGAATCTGTACATGGCATCCTCCTGGCCAATGGATAGGCACTTTGAAATCAGTCAGCGAGCTTGTATAGTTTCTTCATTTAAGATAGAATATACATATTCTTTATATCCCCTCTTTTTATACGTATTCTTTATATCCCCTCTTTTTATTTTCAATTAAAAAAAATGTTTGAATTTTTCTAATTACACCCTTTATAATCCTGGTTACACCCCAGAATGACAAAATTACCCTCGTATAAAATTTAATTTTCAAAAAGTCTCTTCCTTCTTTCTTGGTTACACCCAAAAATCTATCTTCCGTCTTTCCTTCTTCAAGCAGATTTATCCCTTCTATGCAAGATTTCAAAGAAATTTCGAAGCAAAAAAGGTTGGCAAGTTGTGTTCTTCGATCGATTATGTTCTTGTCATGGGTTTCCTAATTCTAAGCTTTTTCTGGGTTCAATTTGTGTTTTTCTTGTTTATGGATTCTACTGTAATTCAATCTTAAACTCAGTTTAAGTAAGTCATGTAAATTGAGTTTAAGTGTATATACTTAAACTCAGTTTAAGTAGATTCATGTAAACTTAGTTTAAGTAGGTTACTTAAACTGAGTTTAAGTGTACATACTTAAACTTAATTTAAGTAGGTCATGTAAACTTAGTTTAAGTAGGTCATATAAACCGCGTTTAAGTGTGCATCTAAAAGTTCAACCTTGTTCAATGATTCTATGTAATCTCAGTTTAGGTATGTACATGTAAACTTAGGTTTTAAATGATTCTACGTAATCTCAATTTAAGTATGTACATGTAAACTTAGTTTAAGTAGGTCATGTAAACTAAGTTTACATGAACCTATTTAAACTGAATTTAAGTTAACCTCAACATGTAAATTGAAACCGTTGTACATGCTGTTGAACAAGATGAAAAAAATTGAAACTATCATTATTGAAAAGGAAGAAGAAATTCACTTATATGCAATCGAGTATGAATGAAAAATGTTTTGATTCACTCTTTAATCTTCCACATAGATTGATTGAACATCAGGATCGTTTGATCGTTTGTGGGTGAAAGAGAGTGACTATGAATGAAATCAAGGTTTTAAGAGAATTTATACAAAAGGGTAATTTTGGTATTATTAAAAAATTTTAAGAAAATTTGGGTGTAACCAGCAATATTTGAGGTGTGAATAGAAAAATTCAAAATGTTTTCTTTAGAGAACTAGAACCTCAGCCTGTGCTATAAATTCTTGAATAGAGTCTAAAACTTACCTAACATTTCAGGTTATTGTGTTTGCTGGCATCCCTTTAAATTAAATAGTTGACTATTACCAATTTCTTTATATGTTTATCTTATGCTCATAGTTATTTTCTTCTCTCATAAATGTTTGCCTGCTCTTCTTGCTGCTTTCTATGCTGTTTAATTTTATTTATTATTTCATTCTTGGCTTTAGATAATTGTATTTCTTATACAGTTTTGGATTTTTAGTCATATGTATTTAGGACTCCAATTTCACCACTGAAACTAAGATTTATGTTGGAATTTTTGTCTGTGTGACAAATGATATTGCAGCAAAAACCAGTGAAGGCAGCATTTCAACGCGTACAAGTTGACAAAGTAGAATTTGTTGATGAGAGGCTTCAGGATAACTCATATTGGGCAAAGGTGTGATATATTGATATGTTTTCCATGCATTTGGTGTGTCCCAGTTGCATTATCTAAGAAATGTGTATGGGTCTATCTCTCTGCAGGATGGCGCCGAGAGTGGTTATGGTGCAAAAGCAGAAGAAATTCTTGGTCAAGTCAGAGGAAGGTCTGTTATTTCATATCCGTAGTGAAACAATTTTATTTCCAATATTTGCACTTGTATTAAATGCATAAAAAATGTCATTATTGATTATTTGTTTAGTGTATTTAGCATTGCAAGATTTATGTTTTCATAGACAAGCTATAAATAGGTCATGCTGTTGGTTGCATGAAGTTTTTATTGTCTAGTGAGTTTTCTATGGAAAATTTGTTTGATGGGCAATGCTGAAGCTAGTTCAACTTTTCCCAGATTTTTCACACATATATCGGAACCTTTCATTCATTTTTGTAAACCCTTTTATTGTCTTATTCAGCTAACCAATATAATTGTTTTATAATGTGTGTAATTTCTTCAAATACACTTTTATTACCATCTTATTTTACTTTTTTGGTGACACCAAATATTTCTCTTACAGGGATTTTCGCCACGAGAAGACCAAGAAGAAACGTGGGACCTATAGGGGTGGACTTATTGATTTACATTCCCACTCAGTTAAGTTTAATTATTCAGATGAGGAGTGA

Protein sequence

>MS.gene96322.t1

MPANPSGIKRIPTLFTFTPRQVLLSNRTMKNGTQNSEQKQKLLLNQSIALYLERSGFSKTLKKFLSEAKIENDNTEGSTVDLEEMCRKYLETCSKDAKSTINDQKAQGVDSKNDEEKSKGKKKKKSNVVSESVVDNVEDNQLESPTVVTENKVKDDLSTDAKVDNGAETEKRSKPKKKKNNKSNIEGGAIEQNAVTENKVKDDLSIDAKVENGAETEKRSKRKMKKKDKSTSEGDAKEQIGDPDATNEEATPEEKKDSKKRKRPISKENGEQDTEIKADEETKRRKIENMSESKGGDQSAKSNGLSENGEENSSVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGAESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE