AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003652.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003652.01.T01 MTR_1g088480 54.863 401 98 7 9 331 32 427 2.22e-134 389
MsG0180003652.01.T01 MTR_1g067530 79.237 236 23 4 120 333 229 460 7.72e-125 366
MsG0180003652.01.T01 MTR_1g067530 93.798 129 8 0 1 129 30 158 1.33e-76 242
MsG0180003652.01.T01 MTR_4g120030 52.369 401 106 10 7 329 26 419 3.14e-124 363
MsG0180003652.01.T01 MTR_4g063600 52.459 305 81 6 83 323 32 336 4.11e-94 283
MsG0180003652.01.T01 MTR_4g063600 51.948 308 81 6 83 323 32 339 1.48e-93 282
MsG0180003652.01.T01 MTR_2g096660 51.623 308 82 5 83 323 38 345 1.58e-91 277
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003652.01.T01 AT3G53520 63.793 406 71 6 1 332 30 433 8.01e-166 469
MsG0180003652.01.T01 AT3G53520 63.480 408 71 6 1 332 30 435 1.07e-165 469
MsG0180003652.01.T01 AT3G53520 60.093 431 71 7 1 332 30 458 2.58e-163 464
MsG0180003652.01.T01 AT3G62830 52.941 408 103 9 6 329 30 432 1.98e-131 382
MsG0180003652.01.T01 AT3G62830 52.941 408 103 9 6 329 30 432 1.98e-131 382
MsG0180003652.01.T01 AT2G47650 52.439 410 95 10 9 328 33 432 5.56e-130 379
MsG0180003652.01.T01 AT2G47650 51.683 416 95 10 9 328 33 438 4.07e-129 376
MsG0180003652.01.T01 AT3G53520 62.270 326 51 7 1 261 30 348 3.08e-125 363
MsG0180003652.01.T01 AT5G59290 51.623 308 82 7 83 323 1 308 3.04e-92 278
MsG0180003652.01.T01 AT5G59290 51.623 308 82 7 83 323 45 352 4.81e-92 279
MsG0180003652.01.T01 AT2G28760 51.299 308 83 5 83 323 31 338 5.28e-92 278
MsG0180003652.01.T01 AT2G28760 51.299 308 83 5 83 323 31 338 5.28e-92 278
MsG0180003652.01.T01 AT2G28760 51.299 308 83 5 83 323 31 338 5.28e-92 278
MsG0180003652.01.T01 AT5G59290 51.623 308 82 7 83 323 30 337 5.40e-92 278
MsG0180003652.01.T01 AT2G28760 51.299 308 83 5 83 323 62 369 6.76e-92 279
MsG0180003652.01.T01 AT5G59290 51.623 308 82 7 83 323 23 330 1.23e-91 277
MsG0180003652.01.T01 AT3G46440 50.649 308 85 5 83 323 29 336 2.79e-91 276
MsG0180003652.01.T01 AT3G46440 50.649 308 85 5 83 323 29 336 2.79e-91 276

Find 115 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGTAATATTCAAATATT+TGG 0.095203 1:+65822699 MsG0180003652.01.T01:three_prime_UTR
CTCTGATGGTTAGTGATTTC+CGG 0.215949 1:+65822437 MsG0180003652.01.T01:CDS
TCCTTTGCTTTGCTAATATC+TGG 0.222306 1:-65822370 None:intergenic
TACTGGGAGGAAAGAGAATT+TGG 0.223365 1:+65818063 MsG0180003652.01.T01:CDS
ATATTCAAATATTTGGATTC+TGG 0.238798 1:+65822706 MsG0180003652.01.T01:three_prime_UTR
CCGGAATCCTCCCCACTCTA+AGG 0.261658 1:-65817919 None:intergenic
GTCCATATGTGTTGAAAATT+CGG 0.271718 1:-65821238 None:intergenic
AAGCAAAGGAACTGCTAAAC+TGG 0.287296 1:+65822383 MsG0180003652.01.T01:CDS
ATCCTCAGAAAGAGACTTAC+TGG 0.308465 1:+65819102 MsG0180003652.01.T01:CDS
AGTAACCATACAAGAGATTA+GGG 0.320602 1:-65822541 None:intergenic
AGGTTGAGAGTGGTGGTTAC+TGG 0.338375 1:+65817959 MsG0180003652.01.T01:CDS
AAACAACCATTGACTGTATA+CGG 0.354678 1:+65821418 MsG0180003652.01.T01:CDS
ACTGGTGGTGCGGGGTTTGT+TGG 0.364922 1:+65817977 MsG0180003652.01.T01:CDS
CCTTAGAGTGGGGAGGATTC+CGG 0.372009 1:+65817919 MsG0180003652.01.T01:CDS
GTTTCCATATGTCTCTGATT+TGG 0.375789 1:+65821461 MsG0180003652.01.T01:CDS
TAAGAGGTAGCTGATCGATC+TGG 0.383775 1:-65817738 None:intergenic
GATGTGTGATCTCTACTTCC+AGG 0.385133 1:+65821889 MsG0180003652.01.T01:CDS
GGGAGGATTCCGGCGGGAAT+CGG 0.392524 1:+65817929 MsG0180003652.01.T01:CDS
AAGGGATGCACCTTCGTTGC+CGG 0.392844 1:-65817900 None:intergenic
TTGTAGTCAGCCCTGTGAAT+AGG 0.396688 1:+65822505 MsG0180003652.01.T01:three_prime_UTR
TGTAGTCAGCCCTGTGAATA+GGG 0.404827 1:+65822506 MsG0180003652.01.T01:three_prime_UTR
CATTTGGTTGATAAGTTGAT+TGG 0.411126 1:+65818004 MsG0180003652.01.T01:CDS
TAGTAACCATACAAGAGATT+AGG 0.411724 1:-65822542 None:intergenic
GTGGTGGTTACTGGTGGTGC+GGG 0.412049 1:+65817968 MsG0180003652.01.T01:CDS
TGAGGTATATGGTGATCCTT+TGG 0.422529 1:+65819076 MsG0180003652.01.T01:CDS
TCCATATGTGTTGAAAATTC+GGG 0.422719 1:-65821237 None:intergenic
CTTCGTTGCCGGAGTTGAAC+CGG 0.424160 1:-65817889 None:intergenic
CTTCATTCAAAATCCGATTC+CGG 0.427534 1:-65822456 None:intergenic
GAAGACGTTGTTCTCGTAAG+AGG 0.429983 1:-65817754 None:intergenic
AGGATTCCGGCGGGAATCGG+TGG 0.430773 1:+65817932 MsG0180003652.01.T01:CDS
ATGGGTACACTTAATATGTT+GGG 0.437761 1:+65819008 MsG0180003652.01.T01:CDS
TGGGGCTAGCAAAGAGAATC+GGG 0.443187 1:+65819027 MsG0180003652.01.T01:CDS
GGGGTTTGTTGGAAGTCATT+TGG 0.444177 1:+65817988 MsG0180003652.01.T01:CDS
GTCTCCCCTAATCTCTTGTA+TGG 0.449523 1:+65822536 MsG0180003652.01.T01:three_prime_UTR
GTTGATAAGTTGATTGGTAG+AGG 0.452000 1:+65818010 MsG0180003652.01.T01:CDS
GAGAGGAGTTGTTATGATGA+AGG 0.452967 1:+65819225 MsG0180003652.01.T01:CDS
TACTCGATTGTATGCTAAGC+TGG 0.454913 1:-65822620 None:intergenic
ACTAGTACTAGTGAGGTATA+TGG 0.456353 1:+65819065 MsG0180003652.01.T01:CDS
TGGTTAGTGATTTCCGGAAT+CGG 0.461428 1:+65822443 MsG0180003652.01.T01:CDS
TACCTAGATCTGGATTGGTC+CGG 0.466016 1:+65817870 MsG0180003652.01.T01:CDS
TTGGGGCTAGCAAAGAGAAT+CGG 0.473363 1:+65819026 MsG0180003652.01.T01:CDS
CCTACCAAATCAGAGACATA+TGG 0.479967 1:-65821465 None:intergenic
ATGGATTATCATCGAGGTGC+TGG 0.482226 1:+65819273 MsG0180003652.01.T01:CDS
AAGAGGTAGCTGATCGATCT+GGG 0.485323 1:-65817737 None:intergenic
CGCATAAGTCCACCGGAGGC+CGG 0.489930 1:+65817839 MsG0180003652.01.T01:CDS
TACTAAAGTGACGTATTACC+AGG 0.497877 1:-65822577 None:intergenic
CCATTGACTGTATACGGTGA+TGG 0.498309 1:+65821424 MsG0180003652.01.T01:CDS
GCCATCATCTAAACACATGC+GGG 0.507368 1:-65821261 None:intergenic
GACACAGTCTCCCTATTCAC+AGG 0.509231 1:-65822516 None:intergenic
ATGCTGCACAAGTTCTTCCC+TGG 0.512842 1:-65821907 None:intergenic
CCATCACCGTATACAGTCAA+TGG 0.514193 1:-65821424 None:intergenic
TGGACTTATGCGTGAAAGCG+TGG 0.527221 1:-65817828 None:intergenic
GATTGTATGCTAAGCTGGCG+TGG 0.528296 1:-65822615 None:intergenic
TTGAATGAAGACGAAGGGAA+AGG 0.535562 1:+65822469 MsG0180003652.01.T01:CDS
TCTTTCTGAGGATGCTCCAA+AGG 0.536160 1:-65819092 None:intergenic
AACCGGACCAATCCAGATCT+AGG 0.540724 1:-65817872 None:intergenic
ATATCTGGTTTCCTCATGTG+TGG 0.542809 1:-65822355 None:intergenic
TTCCGGCGGGAATCGGTGGT+CGG 0.557037 1:+65817936 MsG0180003652.01.T01:CDS
AACTGCGGAAACACTTGCCA+TGG 0.557107 1:+65819254 MsG0180003652.01.T01:CDS
CATTGACTGTATACGGTGAT+GGG 0.558298 1:+65821425 MsG0180003652.01.T01:CDS
ATTGTATGCTAAGCTGGCGT+GGG 0.558964 1:-65822614 None:intergenic
GATGGGTACACTTAATATGT+TGG 0.563378 1:+65819007 MsG0180003652.01.T01:CDS
GAGGGAAGGTCTGCCTCTGA+TGG 0.564662 1:+65822423 MsG0180003652.01.T01:CDS
CCCCAGTAAGTCTCTTTCTG+AGG 0.565786 1:-65819104 None:intergenic
TTGATAAGTTGATTGGTAGA+GGG 0.566398 1:+65818011 MsG0180003652.01.T01:CDS
TCCTCAGAAAGAGACTTACT+GGG 0.566496 1:+65819103 MsG0180003652.01.T01:CDS
CGGCGGGAATCGGTGGTCGG+AGG 0.567665 1:+65817939 MsG0180003652.01.T01:CDS
CGGAATCCTCCCCACTCTAA+GGG 0.574600 1:-65817918 None:intergenic
AAGAGATGCACAAATTTCTA+CGG 0.575251 1:-65822750 None:intergenic
AGTGGTGGTTACTGGTGGTG+CGG 0.575709 1:+65817967 MsG0180003652.01.T01:CDS
AGCAAAGGAACTGCTAAACT+GGG 0.578352 1:+65822384 MsG0180003652.01.T01:CDS
GGATTGGTCCGGTTCAACTC+CGG 0.579392 1:+65817881 MsG0180003652.01.T01:CDS
TAGCAAAGAGAATCGGGGCG+AGG 0.581519 1:+65819033 MsG0180003652.01.T01:CDS
TTACTATCAATAGAAAGTCC+TGG 0.581687 1:+65822559 MsG0180003652.01.T01:three_prime_UTR
CGAAGGTGCATCCCTTAGAG+TGG 0.583204 1:+65817907 MsG0180003652.01.T01:CDS
CGGTTCAACTCCGGCAACGA+AGG 0.584902 1:+65817890 MsG0180003652.01.T01:CDS
ACCAGATATTAGCAAAGCAA+AGG 0.586183 1:+65822369 MsG0180003652.01.T01:CDS
CCCCGCATGTGTTTAGATGA+TGG 0.587874 1:+65821260 MsG0180003652.01.T01:CDS
GAAGGTGCATCCCTTAGAGT+GGG 0.589233 1:+65817908 MsG0180003652.01.T01:CDS
CGCCATCATCTAAACACATG+CGG 0.590365 1:-65821262 None:intergenic
CTCCGACCACCGATTCCCGC+CGG 0.593023 1:-65817938 None:intergenic
GAGGCAGACCTTCCCTCAGT+GGG 0.595211 1:-65822417 None:intergenic
CGGTGGTCGGAGGTTGAGAG+TGG 0.596198 1:+65817949 MsG0180003652.01.T01:CDS
TCATCGAGGTGCTGGCGTTG+AGG 0.598019 1:+65819281 MsG0180003652.01.T01:CDS
ATGTGTGATCTCTACTTCCA+GGG 0.601035 1:+65821890 MsG0180003652.01.T01:CDS
TAGAGTGGGGAGGATTCCGG+CGG 0.603004 1:+65817922 MsG0180003652.01.T01:CDS
GATTTACAAGACAAATGTGA+TGG 0.607290 1:+65818989 MsG0180003652.01.T01:intron
GGTAGCTGATCGATCTGGGG+AGG 0.610822 1:-65817733 None:intergenic
TGGTGGTTACTGGTGGTGCG+GGG 0.612013 1:+65817969 MsG0180003652.01.T01:CDS
CGGAAATCACTAACCATCAG+AGG 0.614097 1:-65822436 None:intergenic
TGGTCGGAGGTTGAGAGTGG+TGG 0.616140 1:+65817952 MsG0180003652.01.T01:CDS
GTAGCTGATCGATCTGGGGA+GGG 0.617474 1:-65817732 None:intergenic
AGCACCTCGATGATAATCCA+TGG 0.617547 1:-65819271 None:intergenic
CGTCTTCTCTTCATCCTCGT+CGG 0.618862 1:+65817770 MsG0180003652.01.T01:CDS
ATTTACAAGACAAATGTGAT+GGG 0.627640 1:+65818990 MsG0180003652.01.T01:intron
GCTTTCACGCATAAGTCCAC+CGG 0.649507 1:+65817832 MsG0180003652.01.T01:CDS
AGAGGCAGACCTTCCCTCAG+TGG 0.650404 1:-65822418 None:intergenic
TTGAGAGTGGTGGTTACTGG+TGG 0.651234 1:+65817962 MsG0180003652.01.T01:CDS
TTCACGCATAAGTCCACCGG+AGG 0.657079 1:+65817835 MsG0180003652.01.T01:CDS
GGACTTATGCGTGAAAGCGT+GGG 0.657693 1:-65817827 None:intergenic
GTGCATCCCTTAGAGTGGGG+AGG 0.660025 1:+65817912 MsG0180003652.01.T01:CDS
AGAGTGGGGAGGATTCCGGC+GGG 0.664910 1:+65817923 MsG0180003652.01.T01:CDS
CTGCTGATGATCCACACATG+AGG 0.675884 1:+65822344 MsG0180003652.01.T01:CDS
AGAGGTAGCTGATCGATCTG+GGG 0.683299 1:-65817736 None:intergenic
ACACAGTCTCCCTATTCACA+GGG 0.684811 1:-65822515 None:intergenic
TGGGTACACTTAATATGTTG+GGG 0.687687 1:+65819009 MsG0180003652.01.T01:CDS
AAGGTGCATCCCTTAGAGTG+GGG 0.704743 1:+65817909 MsG0180003652.01.T01:CDS
CCTCAGAAAGAGACTTACTG+GGG 0.708574 1:+65819104 MsG0180003652.01.T01:CDS
CTCAGAAAGAGACTTACTGG+GGG 0.710262 1:+65819105 MsG0180003652.01.T01:CDS
CCATCATCTAAACACATGCG+GGG 0.713472 1:-65821260 None:intergenic
CTTGCCATGGATTATCATCG+AGG 0.721056 1:+65819267 MsG0180003652.01.T01:CDS
TGATGAAGGAAAGCGAACTG+CGG 0.722751 1:+65819239 MsG0180003652.01.T01:CDS
GGGGCTAGCAAAGAGAATCG+GGG 0.724312 1:+65819028 MsG0180003652.01.T01:CDS
GTAACCATACAAGAGATTAG+GGG 0.742866 1:-65822540 None:intergenic
AACCGATCAAAATTCCGACG+AGG 0.743307 1:-65817784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAATATAAATGAAAAA+AGG - Chr1:65818232-65818251 None:intergenic 10.0%
!!! AAAAAAATATCTATTTTAGT+CGG + Chr1:65819926-65819945 MsG0180003652.01.T01:intron 10.0%
!!! GAATTTTAATTTTTTTGAAT+TGG + Chr1:65821846-65821865 MsG0180003652.01.T01:intron 10.0%
!!! TTATTGATAATTTTTTTACT+GGG + Chr1:65818047-65818066 MsG0180003652.01.T01:CDS 10.0%
!!! TTTATAATTTTATATCATTG+CGG + Chr1:65820543-65820562 MsG0180003652.01.T01:intron 10.0%
!! AAATTCAAAATAAATAGTAG+TGG - Chr1:65821832-65821851 None:intergenic 15.0%
!! AGTTGTAATATTCAAATATT+TGG + Chr1:65822699-65822718 MsG0180003652.01.T01:three_prime_UTR 15.0%
!! TATATTCATTCTTTAATCAA+TGG + Chr1:65822148-65822167 MsG0180003652.01.T01:intron 15.0%
!! TATTGTTTAAAGAAATGAAT+TGG + Chr1:65820600-65820619 MsG0180003652.01.T01:intron 15.0%
!! TTAAAGTAAAACAAAGAAAA+GGG - Chr1:65821327-65821346 None:intergenic 15.0%
!!! AAATTTTGTGATTTGAATTT+TGG + Chr1:65818535-65818554 MsG0180003652.01.T01:intron 15.0%
!!! AATTATTATGTTGGAATTTT+AGG + Chr1:65819201-65819220 MsG0180003652.01.T01:intron 15.0%
!!! AGTCTAAAATTAATTTATGT+TGG - Chr1:65821146-65821165 None:intergenic 15.0%
!!! ATAGATATTTTTTTTTTTGG+TGG - Chr1:65819920-65819939 None:intergenic 15.0%
!!! GTTATTGATAATTTTTTTAC+TGG + Chr1:65818046-65818065 MsG0180003652.01.T01:CDS 15.0%
!!! TTATTTTTTGTTATAGAAAC+AGG + Chr1:65819609-65819628 MsG0180003652.01.T01:intron 15.0%
!!! TTTAAAGTAAAACAAAGAAA+AGG - Chr1:65821328-65821347 None:intergenic 15.0%
!!! TTTTTAAGTCATATTAGAAT+TGG - Chr1:65819404-65819423 None:intergenic 15.0%
!! AAACTATAAGAGAAACTATT+AGG + Chr1:65820375-65820394 MsG0180003652.01.T01:intron 20.0%
!! AATCTATCATAAACCATATT+TGG - Chr1:65820428-65820447 None:intergenic 20.0%
!! ATATTCAAATATTTGGATTC+TGG + Chr1:65822706-65822725 MsG0180003652.01.T01:three_prime_UTR 20.0%
!! GTACTTCGTTAATAATATAT+CGG - Chr1:65820150-65820169 None:intergenic 20.0%
!! TCTAATATGACTTAAAAACA+TGG + Chr1:65819406-65819425 MsG0180003652.01.T01:intron 20.0%
!! TGGTTTATGATAGATTATTA+TGG + Chr1:65820432-65820451 MsG0180003652.01.T01:intron 20.0%
!! TTAAGCTGTTTATATAAACA+AGG + Chr1:65819666-65819685 MsG0180003652.01.T01:intron 20.0%
!! TTGATTTACAAATGAGAATT+TGG + Chr1:65820650-65820669 MsG0180003652.01.T01:intron 20.0%
!! TTTGGTATTAACTTATTAAC+AGG + Chr1:65820668-65820687 MsG0180003652.01.T01:intron 20.0%
!!! CAATAATTCTTCATTTTTCA+TGG - Chr1:65820585-65820604 None:intergenic 20.0%
!!! GTTTTACTTTAAATTACTGT+GGG + Chr1:65821335-65821354 MsG0180003652.01.T01:intron 20.0%
!!! TATTGACTTTATTATGTGAT+TGG + Chr1:65818560-65818579 MsG0180003652.01.T01:intron 20.0%
!!! TGTTTTACTTTAAATTACTG+TGG + Chr1:65821334-65821353 MsG0180003652.01.T01:intron 20.0%
! AACTATTAGGAAAGATTTAG+AGG + Chr1:65820388-65820407 MsG0180003652.01.T01:intron 25.0%
! ATTGGTATATAGTTCACTTT+GGG - Chr1:65820823-65820842 None:intergenic 25.0%
! ATTTACAAGACAAATGTGAT+GGG + Chr1:65818990-65819009 MsG0180003652.01.T01:intron 25.0%
! CAAATAATTCAAATCCAAAC+AGG - Chr1:65819486-65819505 None:intergenic 25.0%
! CAGCATTTGTAATTATACAT+TGG + Chr1:65821924-65821943 MsG0180003652.01.T01:intron 25.0%
! GTGTAACTTTATTATGTGAT+TGG + Chr1:65818600-65818619 MsG0180003652.01.T01:intron 25.0%
! GTTCTATCATAAACCAAATT+TGG - Chr1:65820259-65820278 None:intergenic 25.0%
! TAAAACAAAGAAAAGGGAAA+GGG - Chr1:65821321-65821340 None:intergenic 25.0%
! TAGTTAACAAATATTGAGCA+AGG - Chr1:65819456-65819475 None:intergenic 25.0%
! TCGAAAGGATAAATGAAATA+TGG - Chr1:65821520-65821539 None:intergenic 25.0%
! TGAAACTACAAAACAAGAAT+AGG - Chr1:65822073-65822092 None:intergenic 25.0%
! TGAACTATATACCAATGAAT+AGG + Chr1:65820827-65820846 MsG0180003652.01.T01:intron 25.0%
! TTGTAAATCAAATATCAGCA+AGG - Chr1:65820641-65820660 None:intergenic 25.0%
! TTTGTACATTGATCTTTAGA+TGG - Chr1:65821607-65821626 None:intergenic 25.0%
!! AAAAATTACGTGTTTTATGG+TGG + Chr1:65819175-65819194 MsG0180003652.01.T01:intron 25.0%
!! AATTGATAGTACAAATCGAA+AGG - Chr1:65821535-65821554 None:intergenic 25.0%
!! AGAATTTGGTTCATTTGTTT+GGG + Chr1:65818077-65818096 MsG0180003652.01.T01:intron 25.0%
!! ATAGTTTTTCTATGTCAACA+AGG - Chr1:65820362-65820381 None:intergenic 25.0%
!! ATTTTATGAACTTCTTGTGA+TGG + Chr1:65822247-65822266 MsG0180003652.01.T01:intron 25.0%
!! CTGAAAAATTACGTGTTTTA+TGG + Chr1:65819172-65819191 MsG0180003652.01.T01:intron 25.0%
!! GAATTTTGTGATTGGATTTT+GGG + Chr1:65818940-65818959 MsG0180003652.01.T01:intron 25.0%
!! GGAAATTTGAATTTTGTGAT+TGG + Chr1:65818932-65818951 MsG0180003652.01.T01:intron 25.0%
!! TGAATTTTGTGATTGGATTT+TGG + Chr1:65818939-65818958 MsG0180003652.01.T01:intron 25.0%
!!! AAATTTATTTTCCGATTCAC+AGG + Chr1:65821953-65821972 MsG0180003652.01.T01:intron 25.0%
!!! ACATGTTATTTGTACTGATT+TGG + Chr1:65821189-65821208 MsG0180003652.01.T01:intron 25.0%
!!! GATATTTTTTTTTTTGGTGG+TGG - Chr1:65819917-65819936 None:intergenic 25.0%
!!! TTGATAATTTTTTTACTGGG+AGG + Chr1:65818050-65818069 MsG0180003652.01.T01:CDS 25.0%
!!! TTGTTTTTGTAGTTGTTCAA+TGG + Chr1:65818498-65818517 MsG0180003652.01.T01:intron 25.0%
!!! TTTTAGAGAAACCATTAGAA+AGG + Chr1:65820210-65820229 MsG0180003652.01.T01:intron 25.0%
!!! TTTTCTAAGAAATCATGTTG+TGG + Chr1:65820060-65820079 MsG0180003652.01.T01:intron 25.0%
AACCATTAGAAAGGATTTAG+AGG + Chr1:65820219-65820238 MsG0180003652.01.T01:intron 30.0%
AACTCCTAATATCTTTCAGA+TGG + Chr1:65821682-65821701 MsG0180003652.01.T01:intron 30.0%
AAGAGATGCACAAATTTCTA+CGG - Chr1:65822753-65822772 None:intergenic 30.0%
AAGGATATGATTGTCTTGAT+AGG - Chr1:65818213-65818232 None:intergenic 30.0%
ACACAATATTAAGTGCTAAC+TGG + Chr1:65819989-65820008 MsG0180003652.01.T01:intron 30.0%
ACTTCGTTAATGTTTCAAAG+AGG - Chr1:65821758-65821777 None:intergenic 30.0%
AGATTATATAGGGAGAAGAT+TGG + Chr1:65820025-65820044 MsG0180003652.01.T01:intron 30.0%
AGATTTAGAGGTTAATGAGT+TGG + Chr1:65820400-65820419 MsG0180003652.01.T01:intron 30.0%
AGGATATGATTGTCTTGATA+GGG - Chr1:65818212-65818231 None:intergenic 30.0%
AGTAACCATACAAGAGATTA+GGG - Chr1:65822544-65822563 None:intergenic 30.0%
ATGCATTGAACTTCAAAAAC+AGG - Chr1:65820904-65820923 None:intergenic 30.0%
ATGGGTACACTTAATATGTT+GGG + Chr1:65819008-65819027 MsG0180003652.01.T01:CDS 30.0%
ATGTACAAAAGTTTGTGGTT+TGG + Chr1:65821618-65821637 MsG0180003652.01.T01:intron 30.0%
ATTATGGCATAATTTGATCC+AGG + Chr1:65820448-65820467 MsG0180003652.01.T01:intron 30.0%
CAACCATTAAACAACAACAA+CGG - Chr1:65818909-65818928 None:intergenic 30.0%
CATTGGTATATAGTTCACTT+TGG - Chr1:65820824-65820843 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + Chr1:65819872-65819891 MsG0180003652.01.T01:intron 30.0%
GATCAATGTACAAAAGTTTG+TGG + Chr1:65821613-65821632 MsG0180003652.01.T01:intron 30.0%
GATTTACAAGACAAATGTGA+TGG + Chr1:65818989-65819008 MsG0180003652.01.T01:intron 30.0%
GGGTTATACTTATAATGAAC+AGG - Chr1:65818192-65818211 None:intergenic 30.0%
GTAAAACAAAGAAAAGGGAA+AGG - Chr1:65821322-65821341 None:intergenic 30.0%
GTAATCAAATGTGTCAATGT+TGG + Chr1:65818866-65818885 MsG0180003652.01.T01:intron 30.0%
GTCCATATGTGTTGAAAATT+CGG - Chr1:65821241-65821260 None:intergenic 30.0%
TACAGTAAGGAATTAAGCAA+TGG + Chr1:65822202-65822221 MsG0180003652.01.T01:intron 30.0%
TAGTAACCATACAAGAGATT+AGG - Chr1:65822545-65822564 None:intergenic 30.0%
TATATACCAATGAATAGGTC+AGG + Chr1:65820832-65820851 MsG0180003652.01.T01:intron 30.0%
TCCATATGTGTTGAAAATTC+GGG - Chr1:65821240-65821259 None:intergenic 30.0%
TGCATTGAACTTCAAAAACA+GGG - Chr1:65820903-65820922 None:intergenic 30.0%
TGGTGGCTTAATTATTATGT+TGG + Chr1:65819192-65819211 MsG0180003652.01.T01:intron 30.0%
TTACTATCAATAGAAAGTCC+TGG + Chr1:65822559-65822578 MsG0180003652.01.T01:three_prime_UTR 30.0%
TTATAAACTCACTCACCAAT+TGG - Chr1:65819140-65819159 None:intergenic 30.0%
! AAACAACCATTGACTGTATA+CGG + Chr1:65821418-65821437 MsG0180003652.01.T01:CDS 30.0%
! ATTTTTGTGATTCCACAACA+TGG - Chr1:65820124-65820143 None:intergenic 30.0%
! GAGAATTTGGTTCATTTGTT+TGG + Chr1:65818076-65818095 MsG0180003652.01.T01:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + Chr1:65820412-65820431 MsG0180003652.01.T01:intron 30.0%
! TGTTAGTAATTTTGTTGCAC+AGG + Chr1:65821288-65821307 MsG0180003652.01.T01:intron 30.0%
!! CATTTGGTTGATAAGTTGAT+TGG + Chr1:65818004-65818023 MsG0180003652.01.T01:CDS 30.0%
!! CTTAGCTTGTTCATTCTAAA+AGG + Chr1:65819721-65819740 MsG0180003652.01.T01:intron 30.0%
!! TCATTTTTCATGGAAAGTTG+AGG - Chr1:65820575-65820594 None:intergenic 30.0%
!! TCTTTTAACTAGTACTAGTG+AGG + Chr1:65819058-65819077 MsG0180003652.01.T01:CDS 30.0%
!! TTGATAAGTTGATTGGTAGA+GGG + Chr1:65818011-65818030 MsG0180003652.01.T01:CDS 30.0%
!!! CTTTTAGAATGAACAAGCTA+AGG - Chr1:65819723-65819742 None:intergenic 30.0%
!!! TGTTTTTGAAGTTCAATGCA+TGG + Chr1:65820903-65820922 MsG0180003652.01.T01:intron 30.0%
AAGGTCGCAGAGATTATATA+GGG + Chr1:65820015-65820034 MsG0180003652.01.T01:intron 35.0%
ACCAGATATTAGCAAAGCAA+AGG + Chr1:65822369-65822388 MsG0180003652.01.T01:CDS 35.0%
ACCAGTTGACATTAAAATCG+AGG - Chr1:65819692-65819711 None:intergenic 35.0%
ACTAGTACTAGTGAGGTATA+TGG + Chr1:65819065-65819084 MsG0180003652.01.T01:CDS 35.0%
ACTTTAAATTACTGTGGGAG+AGG + Chr1:65821340-65821359 MsG0180003652.01.T01:intron 35.0%
AGATCTAGGTAAAAACGAAC+CGG - Chr1:65817861-65817880 None:intergenic 35.0%
AGCTCGGAAACTACATTATA+CGG - Chr1:65819757-65819776 None:intergenic 35.0%
AGTGTTTAATTGATCTGAGC+TGG + Chr1:65819321-65819340 MsG0180003652.01.T01:intron 35.0%
ATCTAAACCAGTGTTGTCTA+TGG + Chr1:65820953-65820972 MsG0180003652.01.T01:intron 35.0%
ATTCCACAACATGGTTTCTT+AGG - Chr1:65820115-65820134 None:intergenic 35.0%
CACTCCATCTGAAAGATATT+AGG - Chr1:65821689-65821708 None:intergenic 35.0%
CAGACGATGATTAGCAAAAT+AGG - Chr1:65821573-65821592 None:intergenic 35.0%
CTTCATTCAAAATCCGATTC+CGG - Chr1:65822459-65822478 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - Chr1:65820224-65820243 None:intergenic 35.0%
GACGAATTAACTCAAACCTA+GGG - Chr1:65818105-65818124 None:intergenic 35.0%
GATGGGTACACTTAATATGT+TGG + Chr1:65819007-65819026 MsG0180003652.01.T01:CDS 35.0%
GCATTGAACTTCAAAAACAG+GGG - Chr1:65820902-65820921 None:intergenic 35.0%
GCTTAATTCCTTACTGTAGA+AGG - Chr1:65822200-65822219 None:intergenic 35.0%
GTAACCATACAAGAGATTAG+GGG - Chr1:65822543-65822562 None:intergenic 35.0%
GTAATCGTATGTGTCAGTAT+TGG + Chr1:65818464-65818483 MsG0180003652.01.T01:intron 35.0%
GTAGTTGTTCAATGGTTGTT+TGG + Chr1:65818506-65818525 MsG0180003652.01.T01:intron 35.0%
GTTTCCATATGTCTCTGATT+TGG + Chr1:65821461-65821480 MsG0180003652.01.T01:CDS 35.0%
TACTAAAGTGACGTATTACC+AGG - Chr1:65822580-65822599 None:intergenic 35.0%
TAGTGTTAGTGTCAAACACT+AGG + Chr1:65818676-65818695 MsG0180003652.01.T01:intron 35.0%
TCCTTTGCTTTGCTAATATC+TGG - Chr1:65822373-65822392 None:intergenic 35.0%
TCTGACACACACTTAAATGT+CGG - Chr1:65818780-65818799 None:intergenic 35.0%
TGACGAATTAACTCAAACCT+AGG - Chr1:65818106-65818125 None:intergenic 35.0%
TGATCAACCTCAAGCAAAAT+CGG - Chr1:65818141-65818160 None:intergenic 35.0%
TGGGTACACTTAATATGTTG+GGG + Chr1:65819009-65819028 MsG0180003652.01.T01:CDS 35.0%
TGTTGTGGAATCACAAAAGA+TGG + Chr1:65820075-65820094 MsG0180003652.01.T01:intron 35.0%
TTATAATGAACAGGTGAAGC+AGG - Chr1:65818183-65818202 None:intergenic 35.0%
TTCAATCCTGACCTATTCAT+TGG - Chr1:65820841-65820860 None:intergenic 35.0%
TTTCCGATTCACAGGTTAAT+GGG + Chr1:65821961-65821980 MsG0180003652.01.T01:intron 35.0%
TTTCCTAAGAAACCATGTTG+TGG + Chr1:65820109-65820128 MsG0180003652.01.T01:intron 35.0%
! AATGTGTCAATGTTGGTGTT+AGG + Chr1:65818873-65818892 MsG0180003652.01.T01:intron 35.0%
! CAATATTTGTTAACTACCCG+TGG + Chr1:65819460-65819479 MsG0180003652.01.T01:intron 35.0%
! GGATTTTGAATGAAGACGAA+GGG + Chr1:65822464-65822483 MsG0180003652.01.T01:CDS 35.0%
! GTTTTTACCTAGATCTGGAT+TGG + Chr1:65817865-65817884 MsG0180003652.01.T01:CDS 35.0%
! TAATTGATCTGAGCTGGTTT+AGG + Chr1:65819327-65819346 MsG0180003652.01.T01:intron 35.0%
! TATCAACTTGGTCTTTCGTT+GGG + Chr1:65819777-65819796 MsG0180003652.01.T01:intron 35.0%
! TCATCTTTTCAAAAACACGC+AGG + Chr1:65822270-65822289 MsG0180003652.01.T01:intron 35.0%
! TTATCAACTTGGTCTTTCGT+TGG + Chr1:65819776-65819795 MsG0180003652.01.T01:intron 35.0%
! TTTTCCGATTCACAGGTTAA+TGG + Chr1:65821960-65821979 MsG0180003652.01.T01:intron 35.0%
!! AAAGACCAAGTTGATAAGCT+CGG - Chr1:65819773-65819792 None:intergenic 35.0%
!! ATGTGTCAATGTTGGTGTTA+GGG + Chr1:65818874-65818893 MsG0180003652.01.T01:intron 35.0%
!! ATGTTGGAATTTTAGGTGAG+AGG + Chr1:65819208-65819227 MsG0180003652.01.T01:intron 35.0%
!! GTTGATAAGTTGATTGGTAG+AGG + Chr1:65818010-65818029 MsG0180003652.01.T01:CDS 35.0%
!! GTTGTTGTTTAATGGTTGCT+TGG + Chr1:65818911-65818930 MsG0180003652.01.T01:intron 35.0%
!! TATGTGTCAGTATTGGTGTT+AGG + Chr1:65818471-65818490 MsG0180003652.01.T01:intron 35.0%
!! TTTGTACTGATTTGGTTTGC+TGG + Chr1:65821197-65821216 MsG0180003652.01.T01:intron 35.0%
!!! GATTTGGTTTGCTGGTTTTT+AGG + Chr1:65821205-65821224 MsG0180003652.01.T01:intron 35.0%
AACACTAGAGACACTTCTGA+TGG - Chr1:65818818-65818837 None:intergenic 40.0%
AACATGTAGCATGATCTGAC+AGG - Chr1:65822123-65822142 None:intergenic 40.0%
AAGCAAAGGAACTGCTAAAC+TGG + Chr1:65822383-65822402 MsG0180003652.01.T01:CDS 40.0%
ACCACCATCCTTCACAAATT+TGG + Chr1:65821051-65821070 MsG0180003652.01.T01:intron 40.0%
AGATCAGTGTCGTCAGATAT+TGG - Chr1:65821120-65821139 None:intergenic 40.0%
AGCAAAGGAACTGCTAAACT+GGG + Chr1:65822384-65822403 MsG0180003652.01.T01:CDS 40.0%
AGTTTCCGAGCTTATCAACT+TGG + Chr1:65819765-65819784 MsG0180003652.01.T01:intron 40.0%
ATCCTCAGAAAGAGACTTAC+TGG + Chr1:65819102-65819121 MsG0180003652.01.T01:CDS 40.0%
ATGCCTTCCATCAAATGTGT+CGG + Chr1:65818700-65818719 MsG0180003652.01.T01:intron 40.0%
ATGTAGACCGACACATTTGA+TGG - Chr1:65818710-65818729 None:intergenic 40.0%
ATGTGTGATCTCTACTTCCA+GGG + Chr1:65821890-65821909 MsG0180003652.01.T01:CDS 40.0%
ATTAAGTGCTAACTGGCTGA+AGG + Chr1:65819996-65820015 MsG0180003652.01.T01:intron 40.0%
ATTCAAATCCAAACAGGCCA+CGG - Chr1:65819480-65819499 None:intergenic 40.0%
CCAAATTTGGATCCAACTCA+TGG - Chr1:65820246-65820265 None:intergenic 40.0%
CCTACCAAATCAGAGACATA+TGG - Chr1:65821468-65821487 None:intergenic 40.0%
CTCAATGTCTTCTCTTGTGT+CGG + Chr1:65819358-65819377 MsG0180003652.01.T01:intron 40.0%
CTCTGATGGTTAGTGATTTC+CGG + Chr1:65822437-65822456 MsG0180003652.01.T01:CDS 40.0%
GAAGGTCGCAGAGATTATAT+AGG + Chr1:65820014-65820033 MsG0180003652.01.T01:intron 40.0%
GAGAGGAGTTGTTATGATGA+AGG + Chr1:65819225-65819244 MsG0180003652.01.T01:CDS 40.0%
GCTAATCATCGTCTGAACTT+GGG + Chr1:65821578-65821597 MsG0180003652.01.T01:intron 40.0%
GCTCGGAAACTACATTATAC+GGG - Chr1:65819756-65819775 None:intergenic 40.0%
TACTCGATTGTATGCTAAGC+TGG - Chr1:65822623-65822642 None:intergenic 40.0%
TACTGGGAGGAAAGAGAATT+TGG + Chr1:65818063-65818082 MsG0180003652.01.T01:CDS 40.0%
TATCCTGAGTCATGTGATGT+TGG + Chr1:65820700-65820719 MsG0180003652.01.T01:intron 40.0%
TCCTCAGAAAGAGACTTACT+GGG + Chr1:65819103-65819122 MsG0180003652.01.T01:CDS 40.0%
TGAACTTCAAAAACAGGGGT+CGG - Chr1:65820898-65820917 None:intergenic 40.0%
TGAGGTATATGGTGATCCTT+TGG + Chr1:65819076-65819095 MsG0180003652.01.T01:CDS 40.0%
TGCATAATATATGCAAGGCC+CGG + Chr1:65819877-65819896 MsG0180003652.01.T01:intron 40.0%
TGCTAATCATCGTCTGAACT+TGG + Chr1:65821577-65821596 MsG0180003652.01.T01:intron 40.0%
TGGGGGAATGTTAATCCAAT+TGG + Chr1:65819122-65819141 MsG0180003652.01.T01:CDS 40.0%
TGGTTAGTGATTTCCGGAAT+CGG + Chr1:65822443-65822462 MsG0180003652.01.T01:CDS 40.0%
TTCATTTGTTTGGGAACCCT+AGG + Chr1:65818086-65818105 MsG0180003652.01.T01:intron 40.0%
TTGAATGAAGACGAAGGGAA+AGG + Chr1:65822469-65822488 MsG0180003652.01.T01:CDS 40.0%
TTGTTGTGCCTTCTACAGTA+AGG + Chr1:65822189-65822208 MsG0180003652.01.T01:intron 40.0%
! AAAGCCTTATCCCACTAAGT+GGG - Chr1:65820311-65820330 None:intergenic 40.0%
! ATATCTGGTTTCCTCATGTG+TGG - Chr1:65822358-65822377 None:intergenic 40.0%
! ATCAACTTGGTCTTTCGTTG+GGG + Chr1:65819778-65819797 MsG0180003652.01.T01:intron 40.0%
! CATTGACTGTATACGGTGAT+GGG + Chr1:65821425-65821444 MsG0180003652.01.T01:CDS 40.0%
! CCATGAGTTGGATCCAAATT+TGG + Chr1:65820243-65820262 MsG0180003652.01.T01:intron 40.0%
! CGGATTTTGAATGAAGACGA+AGG + Chr1:65822463-65822482 MsG0180003652.01.T01:CDS 40.0%
! GCCCGAATTTTCAACACATA+TGG + Chr1:65821236-65821255 MsG0180003652.01.T01:CDS 40.0%
! GTTTACACTCGCTGACTAAA+TGG - Chr1:65819964-65819983 None:intergenic 40.0%
! TCACTTTGGGAAAGTTGTCA+AGG - Chr1:65820810-65820829 None:intergenic 40.0%
! TGTTGATCCGATTTTGCTTG+AGG + Chr1:65818131-65818150 MsG0180003652.01.T01:intron 40.0%
!! ATCCTCGTCGGAATTTTGAT+CGG + Chr1:65817782-65817801 MsG0180003652.01.T01:CDS 40.0%
!! CCATATGTCTCTGATTTGGT+AGG + Chr1:65821465-65821484 MsG0180003652.01.T01:intron 40.0%
!! GCCTCGATTTTAATGTCAAC+TGG + Chr1:65819688-65819707 MsG0180003652.01.T01:intron 40.0%
!! GGTTCGTTTTTACCTAGATC+TGG + Chr1:65817860-65817879 MsG0180003652.01.T01:CDS 40.0%
!! TCGCCGTTGTTGTTGTTTAA+TGG + Chr1:65818903-65818922 MsG0180003652.01.T01:intron 40.0%
!!! AGATATCAGTGGTGGGTTTT+TGG - Chr1:65821090-65821109 None:intergenic 40.0%
AACCGATCAAAATTCCGACG+AGG - Chr1:65817787-65817806 None:intergenic 45.0%
AAGAGGTAGCTGATCGATCT+GGG - Chr1:65817740-65817759 None:intergenic 45.0%
ACACAGTCTCCCTATTCACA+GGG - Chr1:65822518-65822537 None:intergenic 45.0%
ACATCTGCCATAGACAACAC+TGG - Chr1:65820963-65820982 None:intergenic 45.0%
ACGGCCAAATTTGTGAAGGA+TGG - Chr1:65821058-65821077 None:intergenic 45.0%
AGACCGACACATTTGATGGA+AGG - Chr1:65818706-65818725 None:intergenic 45.0%
AGCACCTCGATGATAATCCA+TGG - Chr1:65819274-65819293 None:intergenic 45.0%
ATCCTTCACAAATTTGGCCG+TGG + Chr1:65821057-65821076 MsG0180003652.01.T01:intron 45.0%
ATTGTATGCTAAGCTGGCGT+GGG - Chr1:65822617-65822636 None:intergenic 45.0%
CACTTAGTGGGATAAGGCTT+TGG + Chr1:65820310-65820329 MsG0180003652.01.T01:intron 45.0%
CAGCCCATTAACCTGTGAAT+CGG - Chr1:65821967-65821986 None:intergenic 45.0%
CATAATATATGCAAGGCCCG+GGG + Chr1:65819879-65819898 MsG0180003652.01.T01:intron 45.0%
CATGTTGGACCTTTCAACCT+GGG + Chr1:65822008-65822027 MsG0180003652.01.T01:intron 45.0%
CCATCACCGTATACAGTCAA+TGG - Chr1:65821427-65821446 None:intergenic 45.0%
CCATCATCTAAACACATGCG+GGG - Chr1:65821263-65821282 None:intergenic 45.0%
CCTCAGAAAGAGACTTACTG+GGG + Chr1:65819104-65819123 MsG0180003652.01.T01:CDS 45.0%
CGCCATCATCTAAACACATG+CGG - Chr1:65821265-65821284 None:intergenic 45.0%
CGGAAATCACTAACCATCAG+AGG - Chr1:65822439-65822458 None:intergenic 45.0%
CTAACATGGTGAATTCGCCT+GGG - Chr1:65822036-65822055 None:intergenic 45.0%
CTAGAGACACTTCTGATGGA+AGG - Chr1:65818814-65818833 None:intergenic 45.0%
CTCAGAAAGAGACTTACTGG+GGG + Chr1:65819105-65819124 MsG0180003652.01.T01:CDS 45.0%
GAACTTCAAAAACAGGGGTC+GGG - Chr1:65820897-65820916 None:intergenic 45.0%
GAAGACGTTGTTCTCGTAAG+AGG - Chr1:65817757-65817776 None:intergenic 45.0%
GATGTGTGATCTCTACTTCC+AGG + Chr1:65821889-65821908 MsG0180003652.01.T01:CDS 45.0%
GCATAATATATGCAAGGCCC+GGG + Chr1:65819878-65819897 MsG0180003652.01.T01:intron 45.0%
GCCAAATTTGTGAAGGATGG+TGG - Chr1:65821055-65821074 None:intergenic 45.0%
GCCATCATCTAAACACATGC+GGG - Chr1:65821264-65821283 None:intergenic 45.0%
GGAACCAAAAATCCCACTGA+GGG + Chr1:65822405-65822424 MsG0180003652.01.T01:CDS 45.0%
GGATTTAGAGGTCCATGAGT+TGG + Chr1:65820231-65820250 MsG0180003652.01.T01:intron 45.0%
GTCTCCCCTAATCTCTTGTA+TGG + Chr1:65822536-65822555 MsG0180003652.01.T01:three_prime_UTR 45.0%
GTGTTGTCTATGGCAGATGT+CGG + Chr1:65820963-65820982 MsG0180003652.01.T01:intron 45.0%
TAAGAGGTAGCTGATCGATC+TGG - Chr1:65817741-65817760 None:intergenic 45.0%
TAGCCAACATCACATGACTC+AGG - Chr1:65820706-65820725 None:intergenic 45.0%
TCTAACATGGTGAATTCGCC+TGG - Chr1:65822037-65822056 None:intergenic 45.0%
TGATGAAGGAAAGCGAACTG+CGG + Chr1:65819239-65819258 MsG0180003652.01.T01:CDS 45.0%
TGTAGTCAGCCCTGTGAATA+GGG + Chr1:65822506-65822525 MsG0180003652.01.T01:three_prime_UTR 45.0%
TTCAAATCCAAACAGGCCAC+GGG - Chr1:65819479-65819498 None:intergenic 45.0%
TTGTAGTCAGCCCTGTGAAT+AGG + Chr1:65822505-65822524 MsG0180003652.01.T01:three_prime_UTR 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - Chr1:65820310-65820329 None:intergenic 45.0%
! ATGGATTATCATCGAGGTGC+TGG + Chr1:65819273-65819292 MsG0180003652.01.T01:CDS 45.0%
! CAAAGCCTTATCCCACTAAG+TGG - Chr1:65820312-65820331 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - Chr1:65820482-65820501 None:intergenic 45.0%
! CCATTGACTGTATACGGTGA+TGG + Chr1:65821424-65821443 MsG0180003652.01.T01:CDS 45.0%
! CTTGCCATGGATTATCATCG+AGG + Chr1:65819267-65819286 MsG0180003652.01.T01:CDS 45.0%
! TCTTTCTGAGGATGCTCCAA+AGG - Chr1:65819095-65819114 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + Chr1:65819850-65819869 MsG0180003652.01.T01:intron 45.0%
! TTGATGGATGGTGAGCATGT+TGG + Chr1:65821993-65822012 MsG0180003652.01.T01:intron 45.0%
! TTGGGGCTAGCAAAGAGAAT+CGG + Chr1:65819026-65819045 MsG0180003652.01.T01:CDS 45.0%
!! GGGGTTTGTTGGAAGTCATT+TGG + Chr1:65817988-65818007 MsG0180003652.01.T01:CDS 45.0%
!! TACCTAGATCTGGATTGGTC+CGG + Chr1:65817870-65817889 MsG0180003652.01.T01:CDS 45.0%
!!! GGGTTTTTGGCTTTTCACCA+CGG - Chr1:65821077-65821096 None:intergenic 45.0%
!!! TTTTTTTCCCTCGTGTCTGC+AGG + Chr1:65821387-65821406 MsG0180003652.01.T01:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+AGG - Chr1:65819911-65819930 None:intergenic 45.0%
!!! AAAATAGATATTTTTTTTTT+TGG - Chr1:65819923-65819942 None:intergenic 5.0%
AACCGGACCAATCCAGATCT+AGG - Chr1:65817875-65817894 None:intergenic 50.0%
AACTGCGGAAACACTTGCCA+TGG + Chr1:65819254-65819273 MsG0180003652.01.T01:CDS 50.0%
AAGGTGCATCCCTTAGAGTG+GGG + Chr1:65817909-65817928 MsG0180003652.01.T01:CDS 50.0%
AGAGGTAGCTGATCGATCTG+GGG - Chr1:65817739-65817758 None:intergenic 50.0%
AGGTTGAGAGTGGTGGTTAC+TGG + Chr1:65817959-65817978 MsG0180003652.01.T01:CDS 50.0%
ATGCTGCACAAGTTCTTCCC+TGG - Chr1:65821910-65821929 None:intergenic 50.0%
ATGTCGGAGAGCCAAAATCC+TGG + Chr1:65820979-65820998 MsG0180003652.01.T01:intron 50.0%
CACCACGGCCAAATTTGTGA+AGG - Chr1:65821062-65821081 None:intergenic 50.0%
CCAAAAATCCCACTGAGGGA+AGG + Chr1:65822409-65822428 MsG0180003652.01.T01:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + Chr1:65820309-65820328 MsG0180003652.01.T01:intron 50.0%
CCATGGCAGATATCAGTGGT+GGG - Chr1:65821097-65821116 None:intergenic 50.0%
CCCCAGTAAGTCTCTTTCTG+AGG - Chr1:65819107-65819126 None:intergenic 50.0%
CCCCGCATGTGTTTAGATGA+TGG + Chr1:65821260-65821279 MsG0180003652.01.T01:CDS 50.0%
CGTCTTCTCTTCATCCTCGT+CGG + Chr1:65817770-65817789 MsG0180003652.01.T01:CDS 50.0%
CTCTAGACAAGCCTTCCATC+AGG + Chr1:65818393-65818412 MsG0180003652.01.T01:intron 50.0%
CTGCTGATGATCCACACATG+AGG + Chr1:65822344-65822363 MsG0180003652.01.T01:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - Chr1:65820306-65820325 None:intergenic 50.0%
CTTCTGATGGAAGGCTTGTC+TGG - Chr1:65818805-65818824 None:intergenic 50.0%
GACACAGTCTCCCTATTCAC+AGG - Chr1:65822519-65822538 None:intergenic 50.0%
GATTGTATGCTAAGCTGGCG+TGG - Chr1:65822618-65822637 None:intergenic 50.0%
GCATGTTGGACCTTTCAACC+TGG + Chr1:65822007-65822026 MsG0180003652.01.T01:intron 50.0%
GCTTTCACGCATAAGTCCAC+CGG + Chr1:65817832-65817851 MsG0180003652.01.T01:CDS 50.0%
GGGAACCAAAAATCCCACTG+AGG + Chr1:65822404-65822423 MsG0180003652.01.T01:CDS 50.0%
GGTCTACATGTCGACACTAG+TGG + Chr1:65818721-65818740 MsG0180003652.01.T01:intron 50.0%
GTAGTGTCCAACACTCCTGA+TGG - Chr1:65818411-65818430 None:intergenic 50.0%
GTGTCGTCAGATATTGGCCA+TGG - Chr1:65821114-65821133 None:intergenic 50.0%
TGGACTTATGCGTGAAAGCG+TGG - Chr1:65817831-65817850 None:intergenic 50.0%
TGTCCAACACTCCTGATGGA+AGG - Chr1:65818407-65818426 None:intergenic 50.0%
TTAACTACCCGTGGCCTGTT+TGG + Chr1:65819469-65819488 MsG0180003652.01.T01:intron 50.0%
TTGAGAGTGGTGGTTACTGG+TGG + Chr1:65817962-65817981 MsG0180003652.01.T01:CDS 50.0%
TTGGCCATGGCAGATATCAG+TGG - Chr1:65821101-65821120 None:intergenic 50.0%
! AAGCCTTCCATCAGGAGTGT+TGG + Chr1:65818401-65818420 MsG0180003652.01.T01:intron 50.0%
! CACCATGTTAGAGCTTGCTC+AGG + Chr1:65822045-65822064 MsG0180003652.01.T01:intron 50.0%
! CACCTGAGCAAGCTCTAACA+TGG - Chr1:65822050-65822069 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - Chr1:65820483-65820502 None:intergenic 50.0%
! CCTTCCCTCAGTGGGATTTT+TGG - Chr1:65822412-65822431 None:intergenic 50.0%
! CGATTCACAGGTTAATGGGC+TGG + Chr1:65821965-65821984 MsG0180003652.01.T01:intron 50.0%
! GAAGGTGCATCCCTTAGAGT+GGG + Chr1:65817908-65817927 MsG0180003652.01.T01:CDS 50.0%
! GGACTTATGCGTGAAAGCGT+GGG - Chr1:65817830-65817849 None:intergenic 50.0%
! TGGGGCTAGCAAAGAGAATC+GGG + Chr1:65819027-65819046 MsG0180003652.01.T01:CDS 50.0%
!! TAATGGGCTGGCAGCTTTGA+TGG + Chr1:65821977-65821996 MsG0180003652.01.T01:intron 50.0%
AAGGGATGCACCTTCGTTGC+CGG - Chr1:65817903-65817922 None:intergenic 55.0%
ACCTTTCAACCTGGGTACCC+AGG + Chr1:65822016-65822035 MsG0180003652.01.T01:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - Chr1:65820298-65820317 None:intergenic 55.0%
AGCGCCATACTCGGATATGG+CGG - Chr1:65821026-65821045 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + Chr1:65820297-65820316 MsG0180003652.01.T01:intron 55.0%
CACAGCGCCATACTCGGATA+TGG - Chr1:65821029-65821048 None:intergenic 55.0%
CATATCCGAGTATGGCGCTG+TGG + Chr1:65821027-65821046 MsG0180003652.01.T01:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr1:65819848-65819867 None:intergenic 55.0%
CCCACCACTGATATCTGCCA+TGG + Chr1:65821094-65821113 MsG0180003652.01.T01:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr1:65819845-65819864 MsG0180003652.01.T01:intron 55.0%
CCTTAGAGTGGGGAGGATTC+CGG + Chr1:65817919-65817938 MsG0180003652.01.T01:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG + Chr1:65820304-65820323 MsG0180003652.01.T01:intron 55.0%
CGGAATCCTCCCCACTCTAA+GGG - Chr1:65817921-65817940 None:intergenic 55.0%
CGTATAGCCTGCAGACACGA+GGG - Chr1:65821397-65821416 None:intergenic 55.0%
CTTCGTTGCCGGAGTTGAAC+CGG - Chr1:65817892-65817911 None:intergenic 55.0%
GCCATGGCAGATATCAGTGG+TGG - Chr1:65821098-65821117 None:intergenic 55.0%
GGTAAAAACGAACCGGCCTC+CGG - Chr1:65817854-65817873 None:intergenic 55.0%
GTAGCTGATCGATCTGGGGA+GGG - Chr1:65817735-65817754 None:intergenic 55.0%
TAGCAAAGAGAATCGGGGCG+AGG + Chr1:65819033-65819052 MsG0180003652.01.T01:CDS 55.0%
TGGTACCACAGCGCCATACT+CGG - Chr1:65821035-65821054 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + Chr1:65820298-65820317 MsG0180003652.01.T01:intron 55.0%
TTCACGCATAAGTCCACCGG+AGG + Chr1:65817835-65817854 MsG0180003652.01.T01:CDS 55.0%
! AGTGGTGGTTACTGGTGGTG+CGG + Chr1:65817967-65817986 MsG0180003652.01.T01:CDS 55.0%
! CGAAGGTGCATCCCTTAGAG+TGG + Chr1:65817907-65817926 MsG0180003652.01.T01:CDS 55.0%
! CGGTCAGCATGCCAGGATTT+TGG - Chr1:65820993-65821012 None:intergenic 55.0%
! GGGGCTAGCAAAGAGAATCG+GGG + Chr1:65819028-65819047 MsG0180003652.01.T01:CDS 55.0%
!! GGATTGGTCCGGTTCAACTC+CGG + Chr1:65817881-65817900 MsG0180003652.01.T01:CDS 55.0%
AAAAACGAACCGGCCTCCGG+TGG - Chr1:65817851-65817870 None:intergenic 60.0%
AAGGCCCGGGGTTCAAACCT+CGG + Chr1:65819891-65819910 MsG0180003652.01.T01:intron 60.0%
ACTAAGTGGGGTCGGCTACC+TGG - Chr1:65820469-65820488 None:intergenic 60.0%
AGAGGCAGACCTTCCCTCAG+TGG - Chr1:65822421-65822440 None:intergenic 60.0%
AGGTAGCCGACCCCACTTAG+TGG + Chr1:65820468-65820487 MsG0180003652.01.T01:intron 60.0%
CACATGTCGGTCAGCATGCC+AGG - Chr1:65821000-65821019 None:intergenic 60.0%
CCGGAATCCTCCCCACTCTA+AGG - Chr1:65817922-65817941 None:intergenic 60.0%
CGGTTCAACTCCGGCAACGA+AGG + Chr1:65817890-65817909 MsG0180003652.01.T01:CDS 60.0%
CTGGCATGCTGACCGACATG+TGG + Chr1:65820998-65821017 MsG0180003652.01.T01:intron 60.0%
GAGGCAGACCTTCCCTCAGT+GGG - Chr1:65822420-65822439 None:intergenic 60.0%
GAGGGAAGGTCTGCCTCTGA+TGG + Chr1:65822423-65822442 MsG0180003652.01.T01:CDS 60.0%
GATATGGCGGCGCCACATGT+CGG - Chr1:65821013-65821032 None:intergenic 60.0%
GCGTATAGCCTGCAGACACG+AGG - Chr1:65821398-65821417 None:intergenic 60.0%
GGTAGCCGACCCCACTTAGT+GGG + Chr1:65820469-65820488 MsG0180003652.01.T01:intron 60.0%
GGTAGCTGATCGATCTGGGG+AGG - Chr1:65817736-65817755 None:intergenic 60.0%
GTGAATTCGCCTGGGTACCC+AGG - Chr1:65822028-65822047 None:intergenic 60.0%
GTGCATCCCTTAGAGTGGGG+AGG + Chr1:65817912-65817931 MsG0180003652.01.T01:CDS 60.0%
TAGAGTGGGGAGGATTCCGG+CGG + Chr1:65817922-65817941 MsG0180003652.01.T01:CDS 60.0%
TGGTCGGAGGTTGAGAGTGG+TGG + Chr1:65817952-65817971 MsG0180003652.01.T01:CDS 60.0%
! ACTGGTGGTGCGGGGTTTGT+TGG + Chr1:65817977-65817996 MsG0180003652.01.T01:CDS 60.0%
! GCCTGGGTACCCAGGTTGAA+AGG - Chr1:65822020-65822039 None:intergenic 60.0%
! GGGCTGGCAGCTTTGATGGA+TGG + Chr1:65821981-65822000 MsG0180003652.01.T01:intron 60.0%
! GTGGTGGTTACTGGTGGTGC+GGG + Chr1:65817968-65817987 MsG0180003652.01.T01:CDS 60.0%
! TGGTGGTTACTGGTGGTGCG+GGG + Chr1:65817969-65817988 MsG0180003652.01.T01:CDS 60.0%
!! TCATCGAGGTGCTGGCGTTG+AGG + Chr1:65819281-65819300 MsG0180003652.01.T01:CDS 60.0%
AGAGTGGGGAGGATTCCGGC+GGG + Chr1:65817923-65817942 MsG0180003652.01.T01:CDS 65.0%
AGGATTCCGGCGGGAATCGG+TGG + Chr1:65817932-65817951 MsG0180003652.01.T01:CDS 65.0%
AGGGGTCGGGTGCACAAGAG+TGG - Chr1:65820884-65820903 None:intergenic 65.0%
CGCATAAGTCCACCGGAGGC+CGG + Chr1:65817839-65817858 MsG0180003652.01.T01:CDS 65.0%
CGGTGGTCGGAGGTTGAGAG+TGG + Chr1:65817949-65817968 MsG0180003652.01.T01:CDS 65.0%
GGCGCCGCCATATCCGAGTA+TGG + Chr1:65821019-65821038 MsG0180003652.01.T01:intron 65.0%
GGGAGGATTCCGGCGGGAAT+CGG + Chr1:65817929-65817948 MsG0180003652.01.T01:CDS 65.0%
GGGGTCGGGTGCACAAGAGT+GGG - Chr1:65820883-65820902 None:intergenic 65.0%
GGGTCGGGTGCACAAGAGTG+GGG - Chr1:65820882-65820901 None:intergenic 65.0%
GGTCGGGTGCACAAGAGTGG+GGG - Chr1:65820881-65820900 None:intergenic 65.0%
GGTGGCCGAGGTTTGAACCC+CGG - Chr1:65819899-65819918 None:intergenic 65.0%
GTGGCCGAGGTTTGAACCCC+GGG - Chr1:65819898-65819917 None:intergenic 65.0%
TTCCGGCGGGAATCGGTGGT+CGG + Chr1:65817936-65817955 MsG0180003652.01.T01:CDS 65.0%
!! CTCCGACCACCGATTCCCGC+CGG - Chr1:65817941-65817960 None:intergenic 70.0%
CGGCGGGAATCGGTGGTCGG+AGG + Chr1:65817939-65817958 MsG0180003652.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 65817716 65822813 65817716 ID=MsG0180003652.01;Name=MsG0180003652.01
Chr1 mRNA 65817716 65822813 65817716 ID=MsG0180003652.01.T01;Parent=MsG0180003652.01;Name=MsG0180003652.01.T01;_AED=0.38;_eAED=0.40;_QI=0|0.33|0.42|1|1|1|7|312|333
Chr1 exon 65817716 65818084 65817716 ID=MsG0180003652.01.T01:exon:50755;Parent=MsG0180003652.01.T01
Chr1 exon 65818999 65819143 65818999 ID=MsG0180003652.01.T01:exon:50756;Parent=MsG0180003652.01.T01
Chr1 exon 65819223 65819302 65819223 ID=MsG0180003652.01.T01:exon:50757;Parent=MsG0180003652.01.T01
Chr1 exon 65821227 65821292 65821227 ID=MsG0180003652.01.T01:exon:50758;Parent=MsG0180003652.01.T01
Chr1 exon 65821409 65821482 65821409 ID=MsG0180003652.01.T01:exon:50759;Parent=MsG0180003652.01.T01
Chr1 exon 65821874 65821931 65821874 ID=MsG0180003652.01.T01:exon:50760;Parent=MsG0180003652.01.T01
Chr1 exon 65822292 65822813 65822292 ID=MsG0180003652.01.T01:exon:50761;Parent=MsG0180003652.01.T01
Chr1 CDS 65817716 65818084 65817716 ID=MsG0180003652.01.T01:cds;Parent=MsG0180003652.01.T01
Chr1 CDS 65818999 65819143 65818999 ID=MsG0180003652.01.T01:cds;Parent=MsG0180003652.01.T01
Chr1 CDS 65819223 65819302 65819223 ID=MsG0180003652.01.T01:cds;Parent=MsG0180003652.01.T01
Chr1 CDS 65821227 65821292 65821227 ID=MsG0180003652.01.T01:cds;Parent=MsG0180003652.01.T01
Chr1 CDS 65821409 65821482 65821409 ID=MsG0180003652.01.T01:cds;Parent=MsG0180003652.01.T01
Chr1 CDS 65821874 65821931 65821874 ID=MsG0180003652.01.T01:cds;Parent=MsG0180003652.01.T01
Chr1 CDS 65822292 65822501 65822292 ID=MsG0180003652.01.T01:cds;Parent=MsG0180003652.01.T01
Chr1 three_prime_UTR 65822502 65822813 65822502 ID=MsG0180003652.01.T01:three_prime_utr;Parent=MsG0180003652.01.T01
Gene Sequence

>MsG0180003652.01.T01

ATGAAGCACACACGAACCCTCCCCAGATCGATCAGCTACCTCTTACGAGAACAACGTCTTCTCTTCATCCTCGTCGGAATTTTGATCGGTTCAACTTTCTTCATCATTCAACCCACGCTTTCACGCATAAGTCCACCGGAGGCCGGTTCGTTTTTACCTAGATCTGGATTGGTCCGGTTCAACTCCGGCAACGAAGGTGCATCCCTTAGAGTGGGGAGGATTCCGGCGGGAATCGGTGGTCGGAGGTTGAGAGTGGTGGTTACTGGTGGTGCGGGGTTTGTTGGAAGTCATTTGGTTGATAAGTTGATTGGTAGAGGGAATGATGTTATTGTTATTGATAATTTTTTTACTGGGAGGAAAGAGAATTTGACAAATGTGATGGGTACACTTAATATGTTGGGGCTAGCAAAGAGAATCGGGGCGAGGTTTCTTTTAACTAGTACTAGTGAGGTATATGGTGATCCTTTGGAGCATCCTCAGAAAGAGACTTACTGGGGGAATGTTAATCCAATTGGTGAGAGGAGTTGTTATGATGAAGGAAAGCGAACTGCGGAAACACTTGCCATGGATTATCATCGAGGTGCTGGCGTTGAGGTTCGTATTGCCCGAATTTTCAACACATATGGACCCCGCATGTGTTTAGATGATGGCGTGTTGTTAGCTATACGCAAACAACCATTGACTGTATACGGTGATGGGAAGCAAACACGAAGTTTCCATATGTCTCTGATTTGTTCAAATCTAAGAATGATGTGTGATCTCTACTTCCAGGGAAGAACTTGTGCAGCATTTGTTGTCAAAGAAACAATTGATTCAAGTGCTACAATAGAGTACAAACAAAATACTGCTGATGATCCACACATGAGGAAACCAGATATTAGCAAAGCAAAGGAACTGCTAAACTGGGAACCAAAAATCCCACTGAGGGAAGGTCTGCCTCTGATGGTTAGTGATTTCCGGAATCGGATTTTGAATGAAGACGAAGGGAAAGGAATGAGATAA

Protein sequence

>MsG0180003652.01.T01

MKHTRTLPRSISYLLREQRLLFILVGILIGSTFFIIQPTLSRISPPEAGSFLPRSGLVRFNSGNEGASLRVGRIPAGIGGRRLRVVVTGGAGFVGSHLVDKLIGRGNDVIVIDNFFTGRKENLTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGVLLAIRKQPLTVYGDGKQTRSFHMSLICSNLRMMCDLYFQGRTCAAFVVKETIDSSATIEYKQNTADDPHMRKPDISKAKELLNWEPKIPLREGLPLMVSDFRNRILNEDEGKGMR*