Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013584.01.T01 | XP_003599800.1 | 92.029 | 414 | 29 | 3 | 1 | 412 | 1 | 412 | 0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013584.01.T01 | Q680C0 | 27.778 | 360 | 226 | 9 | 42 | 385 | 9 | 350 | 2.97E-44 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013584.01.T01 | G7IXG5 | 92.029 | 414 | 29 | 3 | 1 | 412 | 1 | 412 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0380013584.01 | 0.818497 | 1.900378e-52 | 1.424873e-49 |
| MsG0080048258.01 | MsG0380013584.01 | 0.815155 | 1.068301e-51 | 7.308248e-49 |
| MsG0080048775.01 | MsG0380013584.01 | 0.825899 | 3.643490e-54 | 3.365167e-51 |
| MsG0080048781.01 | MsG0380013584.01 | 0.833905 | 4.076125e-56 | 4.760996e-53 |
| MsG0180001293.01 | MsG0380013584.01 | 0.877632 | 5.378819e-69 | 2.723512e-65 |
| MsG0180002134.01 | MsG0380013584.01 | 0.813337 | 2.694030e-51 | 1.754482e-48 |
| MsG0180002218.01 | MsG0380013584.01 | 0.837487 | 5.049233e-57 | 6.568967e-54 |
| MsG0180002397.01 | MsG0380013584.01 | 0.876706 | 1.128301e-68 | 5.524746e-65 |
| MsG0180002583.01 | MsG0380013584.01 | 0.811789 | 5.873977e-51 | 3.669785e-48 |
| MsG0180003485.01 | MsG0380013584.01 | 0.810310 | 1.228331e-50 | 7.379018e-48 |
| MsG0180003658.01 | MsG0380013584.01 | 0.844874 | 5.767083e-59 | 9.439069e-56 |
| MsG0180003698.01 | MsG0380013584.01 | 0.861070 | 1.328478e-63 | 3.711323e-60 |
| MsG0180003796.01 | MsG0380013584.01 | 0.830212 | 3.335274e-55 | 3.491209e-52 |
| MsG0180003857.01 | MsG0380013584.01 | 0.841968 | 3.444145e-58 | 5.145220e-55 |
| MsG0180004120.01 | MsG0380013584.01 | 0.867164 | 1.674942e-65 | 5.789963e-62 |
| MsG0180004126.01 | MsG0380013584.01 | 0.847221 | 1.326249e-59 | 2.340911e-56 |
| MsG0180004185.01 | MsG0380013584.01 | 0.842004 | 3.369358e-58 | 5.039142e-55 |
| MsG0180004299.01 | MsG0380013584.01 | 0.862231 | 5.865706e-64 | 1.705517e-60 |
| MsG0180004538.01 | MsG0380013584.01 | 0.831413 | 1.693073e-55 | 1.835839e-52 |
| MsG0180004583.01 | MsG0380013584.01 | 0.861290 | 1.138004e-63 | 3.204274e-60 |
| MsG0180004995.01 | MsG0380013584.01 | 0.808128 | 3.605930e-50 | 2.045074e-47 |
| MsG0180005048.01 | MsG0380013584.01 | 0.838564 | 2.667810e-57 | 3.587048e-54 |
| MsG0180005655.01 | MsG0380013584.01 | 0.820106 | 8.170349e-53 | 6.406647e-50 |
| MsG0180006133.01 | MsG0380013584.01 | 0.844088 | 9.389888e-59 | 1.499366e-55 |
| MsG0280010579.01 | MsG0380013584.01 | 0.826274 | 2.968737e-54 | 2.771200e-51 |
| MsG0380012956.01 | MsG0380013584.01 | 0.804047 | 2.605044e-49 | 1.329772e-46 |
| MsG0380013584.01 | MsG0380014542.01 | 0.803624 | 3.189287e-49 | 1.610388e-46 |
| MsG0380013584.01 | MsG0380014666.01 | 0.838822 | 2.288229e-57 | 3.100944e-54 |
| MsG0380013584.01 | MsG0380015058.01 | 0.802331 | 5.902297e-49 | 2.883511e-46 |
| MsG0380013584.01 | MsG0380015090.01 | 0.816922 | 4.306420e-52 | 3.092235e-49 |
| MsG0380013584.01 | MsG0380015219.01 | 0.831582 | 1.538374e-55 | 1.676704e-52 |
| MsG0380013584.01 | MsG0380015340.01 | 0.827115 | 1.869909e-54 | 1.788208e-51 |
| MsG0380013584.01 | MsG0380015394.01 | 0.858210 | 9.632600e-63 | 2.439495e-59 |
| MsG0380013584.01 | MsG0380015954.01 | 0.852429 | 4.643358e-61 | 9.699677e-58 |
| MsG0380013584.01 | MsG0380016027.01 | 0.844238 | 8.557943e-59 | 1.372942e-55 |
| MsG0380013584.01 | MsG0380016091.01 | 0.829544 | 4.851155e-55 | 4.980148e-52 |
| MsG0380013584.01 | MsG0380016092.01 | 0.817335 | 3.478376e-52 | 2.525996e-49 |
| MsG0380013584.01 | MsG0380016217.01 | 0.867495 | 1.311889e-65 | 4.589660e-62 |
| MsG0380013584.01 | MsG0380016225.01 | 0.838496 | 2.778838e-57 | 3.728485e-54 |
| MsG0380013584.01 | MsG0380017128.01 | 0.803763 | 2.984549e-49 | 1.512407e-46 |
| MsG0380013584.01 | MsG0380017181.01 | 0.825857 | 3.728571e-54 | 3.439665e-51 |
| MsG0380013584.01 | MsG0380017332.01 | 0.829088 | 6.260545e-55 | 6.341801e-52 |
| MsG0380013584.01 | MsG0380017361.01 | 0.827845 | 1.249264e-54 | 1.220418e-51 |
| MsG0380013584.01 | MsG0380017605.01 | 0.864768 | 9.587384e-65 | 3.045458e-61 |
| MsG0380013584.01 | MsG0380017632.01 | 0.871234 | 7.983524e-67 | 3.196793e-63 |
| MsG0380013584.01 | MsG0380017696.01 | 0.813780 | 2.152242e-51 | 1.418563e-48 |
| MsG0380013584.01 | MsG0480018228.01 | 0.826500 | 2.621874e-54 | 2.463110e-51 |
| MsG0380013584.01 | MsG0480018526.01 | 0.854128 | 1.512857e-61 | 3.345080e-58 |
| MsG0380013584.01 | MsG0480018785.01 | 0.840994 | 6.216090e-58 | 9.008058e-55 |
| MsG0380013584.01 | MsG0480020398.01 | 0.840999 | 6.197937e-58 | 8.982843e-55 |
| MsG0380013584.01 | MsG0480020856.01 | 0.877651 | 5.297290e-69 | 2.684550e-65 |
| MsG0380013584.01 | MsG0480021100.01 | 0.806817 | 6.840212e-50 | 3.749095e-47 |
| MsG0380013584.01 | MsG0480021301.01 | 0.816373 | 5.717877e-52 | 4.044430e-49 |
| MsG0380013584.01 | MsG0480021773.01 | 0.826989 | 2.003790e-54 | 1.909275e-51 |
| MsG0380013584.01 | MsG0480021901.01 | 0.812872 | 3.406994e-51 | 2.190990e-48 |
| MsG0380013584.01 | MsG0480021902.01 | 0.853954 | 1.697546e-61 | 3.731697e-58 |
| MsG0380013584.01 | MsG0480022307.01 | 0.802371 | 5.790030e-49 | 2.831596e-46 |
| MsG0380013584.01 | MsG0480022559.01 | 0.844565 | 6.989090e-59 | 1.132947e-55 |
| MsG0380013584.01 | MsG0480022784.01 | 0.840408 | 8.851927e-58 | 1.259807e-54 |
| MsG0380013584.01 | MsG0480022991.01 | 0.868776 | 5.078346e-66 | 1.859808e-62 |
| MsG0380013584.01 | MsG0480023003.01 | 0.854268 | 1.378637e-61 | 3.062130e-58 |
| MsG0380013584.01 | MsG0480023194.01 | 0.827703 | 1.351383e-54 | 1.314683e-51 |
| MsG0380013584.01 | MsG0480023296.01 | 0.813029 | 3.148191e-51 | 2.033118e-48 |
| MsG0380013584.01 | MsG0480023426.01 | 0.803967 | 2.706900e-49 | 1.378944e-46 |
| MsG0380013584.01 | MsG0480023484.01 | 0.828394 | 9.210857e-55 | 9.143975e-52 |
| MsG0380013584.01 | MsG0480023672.01 | 0.847514 | 1.102276e-59 | 1.964024e-56 |
| MsG0380013584.01 | MsG0480023706.01 | 0.838265 | 3.187633e-57 | 4.246593e-54 |
| MsG0380013584.01 | MsG0580024657.01 | 0.801381 | 9.249040e-49 | 4.410644e-46 |
| MsG0380013584.01 | MsG0580024742.01 | 0.814295 | 1.656971e-51 | 1.107542e-48 |
| MsG0380013584.01 | MsG0580024787.01 | 0.868784 | 5.047153e-66 | 1.848903e-62 |
| MsG0380013584.01 | MsG0580024813.01 | 0.814692 | 1.353362e-51 | 9.143408e-49 |
| MsG0380013584.01 | MsG0580024954.01 | 0.847126 | 1.408605e-59 | 2.479033e-56 |
| MsG0380013584.01 | MsG0580025093.01 | 0.845807 | 3.224910e-59 | 5.439399e-56 |
| MsG0380013584.01 | MsG0580025177.01 | 0.817767 | 2.779330e-52 | 2.042475e-49 |
| MsG0380013584.01 | MsG0580025186.01 | 0.853383 | 2.477537e-61 | 5.343449e-58 |
| MsG0380013584.01 | MsG0580025504.01 | 0.825727 | 4.004124e-54 | 3.679894e-51 |
| MsG0380013584.01 | MsG0580025506.01 | 0.800133 | 1.662871e-48 | 7.683052e-46 |
| MsG0380013584.01 | MsG0580025775.01 | 0.841376 | 4.933052e-58 | 7.234656e-55 |
| MsG0380013584.01 | MsG0580028756.01 | 0.848462 | 6.036394e-60 | 1.108756e-56 |
| MsG0380013584.01 | MsG0580028927.01 | 0.844201 | 8.755611e-59 | 1.403137e-55 |
| MsG0380013584.01 | MsG0580028955.01 | 0.819065 | 1.411981e-52 | 1.075396e-49 |
| MsG0380013584.01 | MsG0580029102.01 | 0.818364 | 2.037541e-52 | 1.522151e-49 |
| MsG0380013584.01 | MsG0580029123.01 | 0.840269 | 9.625683e-58 | 1.363898e-54 |
| MsG0380013584.01 | MsG0580029591.01 | 0.874816 | 5.022123e-68 | 2.293164e-64 |
| MsG0380013584.01 | MsG0680031616.01 | 0.803341 | 3.651552e-49 | 1.830341e-46 |
| MsG0380013584.01 | MsG0680032772.01 | 0.802216 | 6.232672e-49 | 3.035798e-46 |
| MsG0380013584.01 | MsG0680035350.01 | 0.817970 | 2.501877e-52 | 1.848668e-49 |
| MsG0380013584.01 | MsG0680035776.01 | 0.850795 | 1.347732e-60 | 2.671132e-57 |
| MsG0380013584.01 | MsG0780036534.01 | 0.830628 | 2.639325e-55 | 2.796101e-52 |
| MsG0380013584.01 | MsG0780037741.01 | 0.839714 | 1.342970e-57 | 1.870329e-54 |
| MsG0380013584.01 | MsG0780038402.01 | 0.837917 | 3.915397e-57 | 5.161587e-54 |
| MsG0380013584.01 | MsG0780038736.01 | 0.850526 | 1.604257e-60 | 3.151264e-57 |
| MsG0380013584.01 | MsG0780039861.01 | 0.864172 | 1.472431e-64 | 4.579786e-61 |
| MsG0380013584.01 | MsG0780040364.01 | 0.857749 | 1.319977e-62 | 3.292123e-59 |
| MsG0380013584.01 | MsG0780040620.01 | 0.835819 | 1.344015e-56 | 1.662346e-53 |
| MsG0380013584.01 | MsG0780040641.01 | 0.850526 | 1.604249e-60 | 3.151257e-57 |
| MsG0380013584.01 | MsG0780040899.01 | 0.838381 | 2.974010e-57 | 3.976465e-54 |
| MsG0380013584.01 | MsG0780041008.01 | 0.829828 | 4.137983e-55 | 4.284320e-52 |
| MsG0380013584.01 | MsG0780041132.01 | 0.803313 | 3.700255e-49 | 1.853432e-46 |
| MsG0380013584.01 | MsG0780041142.01 | 0.825086 | 5.677059e-54 | 5.123338e-51 |
| MsG0380013584.01 | MsG0780041143.01 | 0.865854 | 4.366681e-65 | 1.441805e-61 |
| MsG0380013584.01 | MsG0780041273.01 | 0.806157 | 9.429048e-50 | 5.081389e-47 |
| MsG0380013584.01 | MsG0780041340.01 | 0.841878 | 3.636989e-58 | 5.418069e-55 |
| MsG0380013584.01 | MsG0780041359.01 | 0.848206 | 7.104347e-60 | 1.293873e-56 |
| MsG0380013584.01 | MsG0880041930.01 | 0.823064 | 1.693844e-53 | 1.443201e-50 |
| MsG0380013584.01 | MsG0880043752.01 | 0.839025 | 2.027778e-57 | 2.764981e-54 |
| MsG0380013584.01 | MsG0880044103.01 | 0.856993 | 2.208467e-62 | 5.369289e-59 |
| MsG0380013584.01 | MsG0880044437.01 | 0.823922 | 1.067190e-53 | 9.315618e-51 |
| MsG0380013584.01 | MsG0880044989.01 | 0.814683 | 1.359584e-51 | 9.183267e-49 |
| MsG0380013584.01 | MsG0880045439.01 | 0.828933 | 6.824502e-55 | 6.881231e-52 |
| MsG0380013584.01 | MsG0880045584.01 | 0.827367 | 1.626897e-54 | 1.567618e-51 |
| MsG0380013584.01 | MsG0880045612.01 | 0.876917 | 9.530978e-69 | 4.703685e-65 |
| MsG0380013584.01 | MsG0880045647.01 | 0.866790 | 2.203774e-65 | 7.520902e-62 |
| MsG0380013584.01 | MsG0880046431.01 | 0.855644 | 5.493005e-62 | 1.276966e-58 |
| MsG0380013584.01 | MsG0880046646.01 | 0.831661 | 1.470884e-55 | 1.606816e-52 |
| MsG0380013584.01 | MsG0880046904.01 | 0.840885 | 6.639071e-58 | 9.589460e-55 |
| MsG0380013584.01 | MsG0880046905.01 | 0.818538 | 1.860828e-52 | 1.396763e-49 |
| MsG0380013584.01 | MsG0880046906.01 | 0.836418 | 9.470240e-57 | 1.192761e-53 |
| MsG0380013584.01 | MsG0880047447.01 | 0.801426 | 9.056595e-49 | 4.323730e-46 |
| MsG0380013584.01 | MsG0880047649.01 | 0.871443 | 6.805550e-67 | 2.746229e-63 |
| MsG0280006540.01 | MsG0380013584.01 | 0.842259 | 2.883822e-58 | 4.347964e-55 |
| MsG0280006563.01 | MsG0380013584.01 | 0.866514 | 2.696223e-65 | 9.111849e-62 |
| MsG0280007003.01 | MsG0380013584.01 | 0.815497 | 8.969426e-52 | 6.194331e-49 |
| MsG0280007359.01 | MsG0380013584.01 | 0.804056 | 2.594048e-49 | 1.324514e-46 |
| MsG0280009866.01 | MsG0380013584.01 | 0.812676 | 3.760988e-51 | 2.406322e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013584.01.T01 | MTR_3g046880 | 92.029 | 414 | 29 | 3 | 1 | 412 | 1 | 412 | 0.0 | 744 |
| MsG0380013584.01.T01 | MTR_5g091200 | 72.703 | 370 | 80 | 6 | 36 | 396 | 11 | 368 | 0.0 | 545 |
| MsG0380013584.01.T01 | MTR_5g091240 | 58.953 | 363 | 132 | 6 | 45 | 397 | 16 | 371 | 1.20e-134 | 406 |
| MsG0380013584.01.T01 | MTR_5g091240 | 43.169 | 183 | 76 | 7 | 220 | 396 | 514 | 674 | 3.51e-27 | 114 |
| MsG0380013584.01.T01 | MTR_5g091240 | 34.545 | 165 | 72 | 6 | 239 | 397 | 385 | 519 | 2.80e-13 | 72.4 |
| MsG0380013584.01.T01 | MTR_5g091230 | 54.921 | 315 | 114 | 7 | 105 | 406 | 7 | 306 | 2.68e-102 | 314 |
| MsG0380013584.01.T01 | MTR_8g099555 | 33.241 | 361 | 202 | 8 | 41 | 385 | 7 | 344 | 3.81e-58 | 194 |
| MsG0380013584.01.T01 | MTR_5g028370 | 30.220 | 364 | 203 | 7 | 41 | 382 | 7 | 341 | 1.24e-47 | 166 |
| MsG0380013584.01.T01 | MTR_5g028370 | 30.220 | 364 | 203 | 7 | 41 | 382 | 19 | 353 | 2.06e-47 | 166 |
| MsG0380013584.01.T01 | MTR_5g009140 | 30.278 | 360 | 190 | 11 | 42 | 382 | 8 | 325 | 1.54e-36 | 136 |
| MsG0380013584.01.T01 | MTR_5g009140 | 31.250 | 256 | 144 | 6 | 145 | 382 | 28 | 269 | 4.51e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013584.01.T01 | AT5G50890 | 69.169 | 373 | 103 | 4 | 33 | 396 | 37 | 406 | 0.0 | 530 |
| MsG0380013584.01.T01 | AT2G05260 | 29.700 | 367 | 219 | 9 | 42 | 385 | 8 | 358 | 3.25e-48 | 168 |
| MsG0380013584.01.T01 | AT5G24230 | 30.791 | 354 | 200 | 8 | 42 | 371 | 22 | 354 | 5.96e-47 | 165 |
| MsG0380013584.01.T01 | AT5G24230 | 30.791 | 354 | 200 | 8 | 42 | 371 | 22 | 354 | 5.96e-47 | 165 |
| MsG0380013584.01.T01 | AT5G24230 | 30.791 | 354 | 200 | 8 | 42 | 371 | 22 | 354 | 5.96e-47 | 165 |
| MsG0380013584.01.T01 | AT4G10955 | 27.778 | 360 | 226 | 9 | 42 | 385 | 9 | 350 | 3.03e-45 | 160 |
| MsG0380013584.01.T01 | AT4G10955 | 27.778 | 360 | 226 | 9 | 42 | 385 | 9 | 350 | 3.03e-45 | 160 |
| MsG0380013584.01.T01 | AT2G05260 | 31.884 | 276 | 172 | 5 | 42 | 317 | 8 | 267 | 1.15e-44 | 157 |
| MsG0380013584.01.T01 | AT5G24220 | 27.855 | 359 | 212 | 8 | 41 | 379 | 24 | 355 | 3.73e-42 | 152 |
| MsG0380013584.01.T01 | AT5G24180 | 27.548 | 363 | 209 | 9 | 41 | 379 | 22 | 354 | 8.15e-39 | 144 |
| MsG0380013584.01.T01 | AT5G24200 | 31.159 | 276 | 164 | 5 | 42 | 317 | 8 | 257 | 2.64e-33 | 128 |
| MsG0380013584.01.T01 | AT5G24200 | 31.159 | 276 | 164 | 5 | 42 | 317 | 8 | 257 | 2.64e-33 | 128 |
| MsG0380013584.01.T01 | AT5G24200 | 31.159 | 276 | 164 | 5 | 42 | 317 | 8 | 257 | 2.64e-33 | 128 |
| MsG0380013584.01.T01 | AT5G24210 | 27.887 | 355 | 199 | 12 | 45 | 373 | 16 | 339 | 6.31e-27 | 110 |
| MsG0380013584.01.T01 | AT5G24210 | 27.887 | 355 | 199 | 12 | 45 | 373 | 16 | 339 | 6.31e-27 | 110 |
| MsG0380013584.01.T01 | AT5G24210 | 27.887 | 355 | 199 | 12 | 45 | 373 | 16 | 339 | 6.31e-27 | 110 |
| MsG0380013584.01.T01 | AT5G24190 | 23.967 | 242 | 143 | 5 | 165 | 379 | 3 | 230 | 6.95e-16 | 77.4 |
Find 69 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTTGGTTAACCTTAAT+TGG | 0.139654 | 3:+41163768 | MsG0380013584.01.T01:CDS |
| ACATGACAACCATTATTATT+TGG | 0.185396 | 3:-41166633 | None:intergenic |
| AGTTTGAAGAATCGTAATTT+TGG | 0.275514 | 3:+41166483 | MsG0380013584.01.T01:CDS |
| CTTAGTGCTAAAACAGCTTT+TGG | 0.294791 | 3:-41166051 | None:intergenic |
| ATGACAGTTCTCTTGTAGTT+TGG | 0.302940 | 3:-41165811 | None:intergenic |
| CTCGCTTGGGAAAGCCTAAA+AGG | 0.308656 | 3:+41166132 | MsG0380013584.01.T01:CDS |
| TCTTTCTCATTGGATCTATC+AGG | 0.309753 | 3:-41166576 | None:intergenic |
| AAAGCTGTTTGTTGTGAATA+AGG | 0.311716 | 3:+41166662 | MsG0380013584.01.T01:CDS |
| TGTGTCTGGTCCAAGGAATT+TGG | 0.320679 | 3:+41163754 | MsG0380013584.01.T01:CDS |
| TTGAAGGGAATCCACCAATT+TGG | 0.321746 | 3:-41165910 | None:intergenic |
| TAATGAGATCTCTCCAATTA+AGG | 0.336169 | 3:-41163781 | None:intergenic |
| CCCTATGCATTTCATGTGTC+TGG | 0.343400 | 3:+41163740 | MsG0380013584.01.T01:CDS |
| TAATTCTTCTCAAGTATTGC+AGG | 0.361389 | 3:+41166815 | MsG0380013584.01.T01:CDS |
| TGTGTAGCAGGACATTCATT+AGG | 0.374475 | 3:+41166225 | MsG0380013584.01.T01:CDS |
| AAAATGCTCTAGCTCCAAAT+TGG | 0.383483 | 3:+41165896 | MsG0380013584.01.T01:CDS |
| AGAAGTAAAAGAAGTGGAAA+AGG | 0.385546 | 3:+41163670 | MsG0380013584.01.T01:CDS |
| CAGCTTAAATCTTTGTATAC+AGG | 0.386722 | 3:+41166783 | MsG0380013584.01.T01:CDS |
| ATGACCTTCGGTTCCTCGCT+TGG | 0.396243 | 3:+41166118 | MsG0380013584.01.T01:CDS |
| AGCAGCATCCTCTTTCTCAT+TGG | 0.402731 | 3:-41166586 | None:intergenic |
| TCAACTCCTTCGCTGCTTGA+AGG | 0.414457 | 3:-41166405 | None:intergenic |
| TGACCTTCGGTTCCTCGCTT+GGG | 0.418160 | 3:+41166119 | MsG0380013584.01.T01:CDS |
| AGTAGCAATGTTTGTGTAGC+AGG | 0.421432 | 3:+41166213 | MsG0380013584.01.T01:CDS |
| TTAAGGTTAACCAAATTCCT+TGG | 0.426166 | 3:-41163764 | None:intergenic |
| AAATCAGTGTCTGATGCATA+TGG | 0.439991 | 3:+41166189 | MsG0380013584.01.T01:CDS |
| TGGTCTGATCAGTACTAAAT+CGG | 0.441069 | 3:-41166019 | None:intergenic |
| AAAAGAAGTGGAAAAGGAAA+AGG | 0.445177 | 3:+41163676 | MsG0380013584.01.T01:CDS |
| AGAAGAAGAAGTAAAAGAAG+TGG | 0.448192 | 3:+41163664 | MsG0380013584.01.T01:CDS |
| CGAGGAACCGAAGGTCATCT+TGG | 0.457144 | 3:-41166113 | None:intergenic |
| CAGAAGTTTCATGAAGCTCA+TGG | 0.477562 | 3:+41166690 | MsG0380013584.01.T01:CDS |
| AATGTCGGTCCAAATAATAA+TGG | 0.479362 | 3:+41166624 | MsG0380013584.01.T01:CDS |
| TCTTTGTATACAGGTGGTAC+TGG | 0.483380 | 3:+41166792 | MsG0380013584.01.T01:CDS |
| TTTCGGTGCAATACTCGAAT+GGG | 0.486400 | 3:+41165978 | MsG0380013584.01.T01:CDS |
| TTTGTTAGCTTGTACTTGAA+GGG | 0.500967 | 3:-41165925 | None:intergenic |
| TGATAGATCCAATGAGAAAG+AGG | 0.502016 | 3:+41166578 | MsG0380013584.01.T01:CDS |
| GAAACAACAACAAGAAGAGT+TGG | 0.503495 | 3:+41166445 | MsG0380013584.01.T01:CDS |
| GCAGGACATTCATTAGGAGC+TGG | 0.512468 | 3:+41166231 | MsG0380013584.01.T01:CDS |
| ATGCTCTAGCTCCAAATTGG+TGG | 0.515850 | 3:+41165899 | MsG0380013584.01.T01:CDS |
| GAGATCTCATTAGTTCTAGC+TGG | 0.519527 | 3:+41163792 | MsG0380013584.01.T01:CDS |
| GGAAAATCGTTAGCAAAAGA+AGG | 0.524713 | 3:+41166270 | MsG0380013584.01.T01:CDS |
| TTCTCAAGTATTGCAGGGAA+AGG | 0.542324 | 3:+41166821 | MsG0380013584.01.T01:CDS |
| CAACAACATGAACACGAACA+TGG | 0.543272 | 3:+41163619 | None:intergenic |
| AAAGCCTAAAAGGTTCTGTA+AGG | 0.545305 | 3:+41166142 | MsG0380013584.01.T01:CDS |
| GAGACATCCAAGATGACCTT+CGG | 0.546318 | 3:+41166106 | MsG0380013584.01.T01:CDS |
| GGATGTCTCTTCGCATTGTG+TGG | 0.558898 | 3:-41166092 | None:intergenic |
| GATTCTCTTCCAAGCTAACT+CGG | 0.565024 | 3:-41166370 | None:intergenic |
| AATTCTTCTCAAGTATTGCA+GGG | 0.565859 | 3:+41166816 | MsG0380013584.01.T01:CDS |
| CATTTCATGTGTCTGGTCCA+AGG | 0.572346 | 3:+41163747 | MsG0380013584.01.T01:CDS |
| GCTATGAGTCTAAGAAACAT+TGG | 0.572525 | 3:+41166339 | MsG0380013584.01.T01:CDS |
| ACAAGAAGAGTTGGATGCCA+TGG | 0.575559 | 3:+41166454 | MsG0380013584.01.T01:CDS |
| CCAGACACATGAAATGCATA+GGG | 0.590624 | 3:-41163740 | None:intergenic |
| CTCATAGCAATTGAAACAGA+AGG | 0.596681 | 3:-41166324 | None:intergenic |
| ATGCTTCCTTCAAGCAGCGA+AGG | 0.596900 | 3:+41166399 | MsG0380013584.01.T01:CDS |
| TTTCCCAAGCGAGGAACCGA+AGG | 0.599086 | 3:-41166122 | None:intergenic |
| GATAATAACAAGGAGAATGT+CGG | 0.609120 | 3:+41166609 | MsG0380013584.01.T01:CDS |
| ACCAGACACATGAAATGCAT+AGG | 0.614858 | 3:-41163741 | None:intergenic |
| CATGGAAATCACAACAACAA+AGG | 0.617239 | 3:+41163637 | MsG0380013584.01.T01:CDS |
| GTTGATAATATCAACAACGA+TGG | 0.618756 | 3:+41166423 | MsG0380013584.01.T01:CDS |
| CTTAAATCTTTGTATACAGG+TGG | 0.619640 | 3:+41166786 | MsG0380013584.01.T01:CDS |
| TAGCAATTGAAACAGAAGGC+GGG | 0.620328 | 3:-41166320 | None:intergenic |
| CTCATGGAATTGAACAATGG+TGG | 0.620564 | 3:+41166706 | MsG0380013584.01.T01:CDS |
| TTCTTCAAACTAGTTAACCA+TGG | 0.632351 | 3:-41166471 | None:intergenic |
| GCTGTTGTGGTTGAAAAGCA+AGG | 0.634687 | 3:+41163698 | MsG0380013584.01.T01:CDS |
| GGATGCTGCTGATAATAACA+AGG | 0.657880 | 3:+41166599 | MsG0380013584.01.T01:CDS |
| GGAAAAGGAAAAGGCTGTTG+TGG | 0.666167 | 3:+41163685 | MsG0380013584.01.T01:CDS |
| CTATTGTTCACATAGAGATG+AGG | 0.677824 | 3:-41166522 | None:intergenic |
| ATAGCAATTGAAACAGAAGG+CGG | 0.679402 | 3:-41166321 | None:intergenic |
| TTAGTACTGATCAGACCAAG+TGG | 0.693039 | 3:+41166024 | MsG0380013584.01.T01:CDS |
| ACACTTATAGACGAAAGAGA+CGG | 0.699729 | 3:+41165949 | MsG0380013584.01.T01:CDS |
| AAGCTCATGGAATTGAACAA+TGG | 0.723699 | 3:+41166703 | MsG0380013584.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAGAAAAAAAAAAAAAA+GGG | + | Chr3:41164114-41164133 | MsG0380013584.01.T01:intron | 10.0% |
| !! | TTTATACATTTGTAATTTAT+TGG | + | Chr3:41165035-41165054 | MsG0380013584.01.T01:intron | 10.0% |
| !!! | AGAATTTTGAATTTAAATTT+AGG | + | Chr3:41164051-41164070 | MsG0380013584.01.T01:intron | 10.0% |
| !!! | GAATTTTGAATTTAAATTTA+GGG | + | Chr3:41164052-41164071 | MsG0380013584.01.T01:intron | 10.0% |
| !!! | GTATTATTTTGAATTTTTTT+AGG | + | Chr3:41163934-41163953 | MsG0380013584.01.T01:intron | 10.0% |
| !! | AATAAGTTACAATTGTATAA+AGG | - | Chr3:41165570-41165589 | None:intergenic | 15.0% |
| !! | AATTAAGGAAACAAATAAAT+AGG | - | Chr3:41164515-41164534 | None:intergenic | 15.0% |
| !! | AATTTAAGAAAATTGAAATG+AGG | + | Chr3:41164828-41164847 | MsG0380013584.01.T01:intron | 15.0% |
| !! | ATTAAGGAAACAAATAAATA+GGG | - | Chr3:41164514-41164533 | None:intergenic | 15.0% |
| !! | ATTTAAGAAAATTGAAATGA+GGG | + | Chr3:41164829-41164848 | MsG0380013584.01.T01:intron | 15.0% |
| !! | CAGAAAGAAAAAAAAAAAAA+AGG | + | Chr3:41164113-41164132 | MsG0380013584.01.T01:intron | 15.0% |
| !! | TTAAGTTAAAGTTTCTAAAT+GGG | + | Chr3:41164021-41164040 | MsG0380013584.01.T01:intron | 15.0% |
| !! | TTTATACAATTGTAACTTAT+TGG | + | Chr3:41165569-41165588 | MsG0380013584.01.T01:intron | 15.0% |
| !!! | CATAGTTTAAGATAATTTTT+TGG | + | Chr3:41164388-41164407 | MsG0380013584.01.T01:intron | 15.0% |
| !!! | TATTTTGAATTTTTTTAGGT+TGG | + | Chr3:41163938-41163957 | MsG0380013584.01.T01:intron | 15.0% |
| !!! | TTTAAGTTAAAGTTTCTAAA+TGG | + | Chr3:41164020-41164039 | MsG0380013584.01.T01:intron | 15.0% |
| !!! | TTTTTTTTTCTTTCTGAAAA+CGG | - | Chr3:41164109-41164128 | None:intergenic | 15.0% |
| !! | AAACATAAATAATTGAAAGC+TGG | - | Chr3:41165254-41165273 | None:intergenic | 20.0% |
| !! | AAACTTAAATAATTGAATGC+TGG | - | Chr3:41165006-41165025 | None:intergenic | 20.0% |
| !! | AATTCATATCAAAACTAAAC+AGG | - | Chr3:41164614-41164633 | None:intergenic | 20.0% |
| !! | ATTCATATCAAAACTAAACA+GGG | - | Chr3:41164613-41164632 | None:intergenic | 20.0% |
| !! | TTTATAATATTGTTTGAGAG+AGG | + | Chr3:41165651-41165670 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | AAATTTTGGTTTTTGTTATG+TGG | + | Chr3:41163861-41163880 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | AATTTTGGTTTTTGTTATGT+GGG | + | Chr3:41163862-41163881 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | ACTAGATTTGATGAAAATTT+TGG | + | Chr3:41163847-41163866 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | ATTAATTTAACTACAGGTTT+TGG | + | Chr3:41164472-41164491 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | TCCTTAATTGTTTTGTATTT+GGG | + | Chr3:41164526-41164545 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | TGAAAATTTGAAATTTGGTT+TGG | + | Chr3:41163912-41163931 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | TTCCTTAATTGTTTTGTATT+TGG | + | Chr3:41164525-41164544 | MsG0380013584.01.T01:intron | 20.0% |
| !!! | TTGAGTGAAAATTTGAAATT+TGG | + | Chr3:41163907-41163926 | MsG0380013584.01.T01:intron | 20.0% |
| ! | AAAAGAAGCTATACATGAAA+AGG | - | Chr3:41163825-41163844 | None:intergenic | 25.0% |
| ! | AAAGAAGCTATACATGAAAA+GGG | - | Chr3:41163824-41163843 | None:intergenic | 25.0% |
| ! | AAGAACGAAAATGAAAAACT+AGG | - | Chr3:41165708-41165727 | None:intergenic | 25.0% |
| ! | AAGGAGAAAATTTGAGAAAA+TGG | + | Chr3:41163987-41164006 | MsG0380013584.01.T01:intron | 25.0% |
| ! | ACATGACAACCATTATTATT+TGG | - | Chr3:41166636-41166655 | None:intergenic | 25.0% |
| ! | ACTGATAATACAGTCAAATA+AGG | - | Chr3:41165625-41165644 | None:intergenic | 25.0% |
| ! | AGAACGAAAATGAAAAACTA+GGG | - | Chr3:41165707-41165726 | None:intergenic | 25.0% |
| ! | AGCTTCATTAATTTAACTAC+AGG | + | Chr3:41164466-41164485 | MsG0380013584.01.T01:intron | 25.0% |
| ! | AGGAGAAAATTTGAGAAAAT+GGG | + | Chr3:41163988-41164007 | MsG0380013584.01.T01:intron | 25.0% |
| ! | CAATTTCGTATCTCAAAAAA+AGG | - | Chr3:41163967-41163986 | None:intergenic | 25.0% |
| ! | GAGAAAATCCATGATATTAA+TGG | - | Chr3:41164586-41164605 | None:intergenic | 25.0% |
| ! | TCCCAAATACAAAACAATTA+AGG | - | Chr3:41164530-41164549 | None:intergenic | 25.0% |
| !! | AAGGAAGCATATGAAAAATA+GGG | - | Chr3:41165420-41165439 | None:intergenic | 25.0% |
| !! | AGTTTGAAGAATCGTAATTT+TGG | + | Chr3:41166483-41166502 | MsG0380013584.01.T01:CDS | 25.0% |
| !! | ATTGTATGAAGTTCTAGTAA+AGG | - | Chr3:41165757-41165776 | None:intergenic | 25.0% |
| !!! | GATTTCAGGTTTTTTATTGA+CGG | + | Chr3:41164143-41164162 | MsG0380013584.01.T01:intron | 25.0% |
| !!! | TAATTTTGGTGTTGGAAAAT+GGG | + | Chr3:41166497-41166516 | MsG0380013584.01.T01:CDS | 25.0% |
| !!! | TAGCATAATTGAGTTGATTA+TGG | + | Chr3:41165090-41165109 | MsG0380013584.01.T01:intron | 25.0% |
| !!! | TTTTTGAGATACGAAATTGA+AGG | + | Chr3:41163968-41163987 | MsG0380013584.01.T01:intron | 25.0% |
| AAAAGAAGTGGAAAAGGAAA+AGG | + | Chr3:41163676-41163695 | MsG0380013584.01.T01:CDS | 30.0% | |
| AAAATAAAACTCGTTTCCAC+AGG | - | Chr3:41165203-41165222 | None:intergenic | 30.0% | |
| AAAATCAAACTCATTTCCAC+AGG | - | Chr3:41164955-41164974 | None:intergenic | 30.0% | |
| AATGTCGGTCCAAATAATAA+TGG | + | Chr3:41166624-41166643 | MsG0380013584.01.T01:CDS | 30.0% | |
| AGAAGAAGAAGTAAAAGAAG+TGG | + | Chr3:41163664-41163683 | MsG0380013584.01.T01:CDS | 30.0% | |
| AGAAGTAAAAGAAGTGGAAA+AGG | + | Chr3:41163670-41163689 | MsG0380013584.01.T01:CDS | 30.0% | |
| ATTAGACCTATGATTGAACA+CGG | + | Chr3:41164764-41164783 | MsG0380013584.01.T01:intron | 30.0% | |
| CAGCTTAAATCTTTGTATAC+AGG | + | Chr3:41166783-41166802 | MsG0380013584.01.T01:CDS | 30.0% | |
| CTTAAATCTTTGTATACAGG+TGG | + | Chr3:41166786-41166805 | MsG0380013584.01.T01:CDS | 30.0% | |
| GATAATAACAAGGAGAATGT+CGG | + | Chr3:41166609-41166628 | MsG0380013584.01.T01:CDS | 30.0% | |
| GGAATTTGGTTAACCTTAAT+TGG | + | Chr3:41163768-41163787 | MsG0380013584.01.T01:CDS | 30.0% | |
| GTTACTACTAACTCCAAAAT+CGG | + | Chr3:41165144-41165163 | MsG0380013584.01.T01:intron | 30.0% | |
| TAATGAGATCTCTCCAATTA+AGG | - | Chr3:41163784-41163803 | None:intergenic | 30.0% | |
| TAGTAGTAACACCATACTAT+CGG | - | Chr3:41165382-41165401 | None:intergenic | 30.0% | |
| TGAGTTTAACATTGTCTGAT+AGG | + | Chr3:41165116-41165135 | MsG0380013584.01.T01:intron | 30.0% | |
| TGCTGAAAATATTAGAGACA+TGG | - | Chr3:41165678-41165697 | None:intergenic | 30.0% | |
| TTAAGGTTAACCAAATTCCT+TGG | - | Chr3:41163767-41163786 | None:intergenic | 30.0% | |
| TTAGTCGTTAGACCAAAAAT+CGG | + | Chr3:41164894-41164913 | MsG0380013584.01.T01:intron | 30.0% | |
| TTATAAAATCCTGCTTCAAC+TGG | + | Chr3:41164738-41164757 | MsG0380013584.01.T01:intron | 30.0% | |
| TTCTTCAAACTAGTTAACCA+TGG | - | Chr3:41166474-41166493 | None:intergenic | 30.0% | |
| TTTAACATTGTCCGATAGTA+TGG | + | Chr3:41165368-41165387 | MsG0380013584.01.T01:intron | 30.0% | |
| ! | AAAAAGGGTTTTCAGATTTC+AGG | + | Chr3:41164129-41164148 | MsG0380013584.01.T01:intron | 30.0% |
| ! | AATTCTTCTCAAGTATTGCA+GGG | + | Chr3:41166816-41166835 | MsG0380013584.01.T01:CDS | 30.0% |
| ! | AGGAAGCATATGAAAAATAG+GGG | - | Chr3:41165419-41165438 | None:intergenic | 30.0% |
| ! | GAAGGAAGCATATGAAAAAT+AGG | - | Chr3:41165421-41165440 | None:intergenic | 30.0% |
| ! | TAATTCTTCTCAAGTATTGC+AGG | + | Chr3:41166815-41166834 | MsG0380013584.01.T01:CDS | 30.0% |
| ! | TATGAAGTTCTAGTAAAGGT+TGG | - | Chr3:41165753-41165772 | None:intergenic | 30.0% |
| ! | TCTCTAATATTTTCAGCAAG+AGG | + | Chr3:41165680-41165699 | MsG0380013584.01.T01:intron | 30.0% |
| ! | TGTATTTGGGATCGAAATTT+GGG | + | Chr3:41164539-41164558 | MsG0380013584.01.T01:intron | 30.0% |
| ! | TTGTATTTGGGATCGAAATT+TGG | + | Chr3:41164538-41164557 | MsG0380013584.01.T01:intron | 30.0% |
| !! | AAAGCTGTTTGTTGTGAATA+AGG | + | Chr3:41166662-41166681 | MsG0380013584.01.T01:CDS | 30.0% |
| !! | AAGAATCGTAATTTTGGTGT+TGG | + | Chr3:41166489-41166508 | MsG0380013584.01.T01:CDS | 30.0% |
| !! | CTAGTTTCATTGATTTAACC+AGG | - | Chr3:41164978-41164997 | None:intergenic | 30.0% |
| !! | GTTGATAATATCAACAACGA+TGG | + | Chr3:41166423-41166442 | MsG0380013584.01.T01:CDS | 30.0% |
| !! | TTATTGACTCAATGAGTCAT+TGG | - | Chr3:41165066-41165085 | None:intergenic | 30.0% |
| !! | TTTGTTAGCTTGTACTTGAA+GGG | - | Chr3:41165928-41165947 | None:intergenic | 30.0% |
| !!! | ACTATGGATTTTTAGGTTTG+AGG | + | Chr3:41164167-41164186 | MsG0380013584.01.T01:intron | 30.0% |
| !!! | GTAATTTTGGTGTTGGAAAA+TGG | + | Chr3:41166496-41166515 | MsG0380013584.01.T01:CDS | 30.0% |
| !!! | GTTTTTTATTGACGGAACTA+TGG | + | Chr3:41164151-41164170 | MsG0380013584.01.T01:intron | 30.0% |
| !!! | TGTCATTGCTTGTTTTATAC+AGG | + | Chr3:41165828-41165847 | MsG0380013584.01.T01:CDS | 30.0% |
| !!! | TTTTGTTAGCTTGTACTTGA+AGG | - | Chr3:41165929-41165948 | None:intergenic | 30.0% |
| AAAGCCTAAAAGGTTCTGTA+AGG | + | Chr3:41166142-41166161 | MsG0380013584.01.T01:CDS | 35.0% | |
| AAATCAGTGTCTGATGCATA+TGG | + | Chr3:41166189-41166208 | MsG0380013584.01.T01:CDS | 35.0% | |
| AAGCTCATGGAATTGAACAA+TGG | + | Chr3:41166703-41166722 | MsG0380013584.01.T01:CDS | 35.0% | |
| AAGTGTGAAGGAAACATAGA+AGG | + | Chr3:41165511-41165530 | MsG0380013584.01.T01:intron | 35.0% | |
| ACACTTATAGACGAAAGAGA+CGG | + | Chr3:41165949-41165968 | MsG0380013584.01.T01:CDS | 35.0% | |
| ACGATACTAACACTTAGACA+TGG | + | Chr3:41164800-41164819 | MsG0380013584.01.T01:intron | 35.0% | |
| ATAACTACATATGCTGTTGC+CGG | + | Chr3:41164855-41164874 | MsG0380013584.01.T01:intron | 35.0% | |
| ATAGCAATTGAAACAGAAGG+CGG | - | Chr3:41166324-41166343 | None:intergenic | 35.0% | |
| ATATGAAAAATAGGGGACTC+TGG | - | Chr3:41165412-41165431 | None:intergenic | 35.0% | |
| ATGACAGTTCTCTTGTAGTT+TGG | - | Chr3:41165814-41165833 | None:intergenic | 35.0% | |
| CATGGAAATCACAACAACAA+AGG | + | Chr3:41163637-41163656 | MsG0380013584.01.T01:CDS | 35.0% | |
| CTATTGTTCACATAGAGATG+AGG | - | Chr3:41166525-41166544 | None:intergenic | 35.0% | |
| CTCATAGCAATTGAAACAGA+AGG | - | Chr3:41166327-41166346 | None:intergenic | 35.0% | |
| GAAACAACAACAAGAAGAGT+TGG | + | Chr3:41166445-41166464 | MsG0380013584.01.T01:CDS | 35.0% | |
| GCTATGAGTCTAAGAAACAT+TGG | + | Chr3:41166339-41166358 | MsG0380013584.01.T01:CDS | 35.0% | |
| GGAAAATCGTTAGCAAAAGA+AGG | + | Chr3:41166270-41166289 | MsG0380013584.01.T01:CDS | 35.0% | |
| TCTTTCTCATTGGATCTATC+AGG | - | Chr3:41166579-41166598 | None:intergenic | 35.0% | |
| TGATAGATCCAATGAGAAAG+AGG | + | Chr3:41166578-41166597 | MsG0380013584.01.T01:CDS | 35.0% | |
| TGGTCTGATCAGTACTAAAT+CGG | - | Chr3:41166022-41166041 | None:intergenic | 35.0% | |
| TGTTAATGACCTATGATGCA+CGG | + | Chr3:41164213-41164232 | MsG0380013584.01.T01:intron | 35.0% | |
| ! | AAAATGCTCTAGCTCCAAAT+TGG | + | Chr3:41165896-41165915 | MsG0380013584.01.T01:CDS | 35.0% |
| ! | ATACCAATTTTGTTGCATGC+AGG | + | Chr3:41165782-41165801 | MsG0380013584.01.T01:intron | 35.0% |
| ! | CTTAGTGCTAAAACAGCTTT+TGG | - | Chr3:41166054-41166073 | None:intergenic | 35.0% |
| ! | GAAAGAGACGGTTCAATTTT+CGG | + | Chr3:41165961-41165980 | MsG0380013584.01.T01:CDS | 35.0% |
| ! | GTATTTGGGATCGAAATTTG+GGG | + | Chr3:41164540-41164559 | MsG0380013584.01.T01:intron | 35.0% |
| ! | TGAACCTTACAGAACCTTTT+AGG | - | Chr3:41166149-41166168 | None:intergenic | 35.0% |
| ! | TGACGGAACTATGGATTTTT+AGG | + | Chr3:41164160-41164179 | MsG0380013584.01.T01:intron | 35.0% |
| !! | AGCATTGGCCATTAATATCA+TGG | + | Chr3:41164575-41164594 | MsG0380013584.01.T01:intron | 35.0% |
| !! | GGAAATGAGTTTGATTTTCC+TGG | + | Chr3:41164957-41164976 | MsG0380013584.01.T01:intron | 35.0% |
| !! | TTATTGACTCAATGAGTCAC+TGG | - | Chr3:41165314-41165333 | None:intergenic | 35.0% |
| !!! | AAAGCTGTTTTAGCACTAAG+AGG | + | Chr3:41166054-41166073 | MsG0380013584.01.T01:CDS | 35.0% |
| !!! | GGAAACGAGTTTTATTTTGC+TGG | + | Chr3:41165205-41165224 | MsG0380013584.01.T01:intron | 35.0% |
| AAAATTGTCGCCTCTGACTT+TGG | + | Chr3:41164652-41164671 | MsG0380013584.01.T01:intron | 40.0% | |
| ACCAGACACATGAAATGCAT+AGG | - | Chr3:41163744-41163763 | None:intergenic | 40.0% | |
| AGATGCATTTCCGATTGACA+TGG | - | Chr3:41164929-41164948 | None:intergenic | 40.0% | |
| AGTAGCAATGTTTGTGTAGC+AGG | + | Chr3:41166213-41166232 | MsG0380013584.01.T01:CDS | 40.0% | |
| ATGTCAATCGGAAATGCATC+TGG | + | Chr3:41164928-41164947 | MsG0380013584.01.T01:intron | 40.0% | |
| CACTTGCGTTAGTATTGTGT+TGG | + | Chr3:41165450-41165469 | MsG0380013584.01.T01:intron | 40.0% | |
| CAGAAGTTTCATGAAGCTCA+TGG | + | Chr3:41166690-41166709 | MsG0380013584.01.T01:CDS | 40.0% | |
| CCAGACACATGAAATGCATA+GGG | - | Chr3:41163743-41163762 | None:intergenic | 40.0% | |
| CTAAGTGTTAGTATCGTGTC+TGG | - | Chr3:41164797-41164816 | None:intergenic | 40.0% | |
| CTACTAACTCCAAAATCGGT+CGG | + | Chr3:41165148-41165167 | MsG0380013584.01.T01:intron | 40.0% | |
| CTCATGGAATTGAACAATGG+TGG | + | Chr3:41166706-41166725 | MsG0380013584.01.T01:CDS | 40.0% | |
| CTTCCTGCATGCAACAAAAT+TGG | - | Chr3:41165788-41165807 | None:intergenic | 40.0% | |
| GAAATTTGGGGATCCTGATT+TGG | + | Chr3:41164552-41164571 | MsG0380013584.01.T01:intron | 40.0% | |
| GATTCTCTTCCAAGCTAACT+CGG | - | Chr3:41166373-41166392 | None:intergenic | 40.0% | |
| GGATGCTGCTGATAATAACA+AGG | + | Chr3:41166599-41166618 | MsG0380013584.01.T01:CDS | 40.0% | |
| TAGACATTGACATGTCGTGT+CGG | + | Chr3:41164330-41164349 | MsG0380013584.01.T01:intron | 40.0% | |
| TAGCAATTGAAACAGAAGGC+GGG | - | Chr3:41166323-41166342 | None:intergenic | 40.0% | |
| TCTTTGTATACAGGTGGTAC+TGG | + | Chr3:41166792-41166811 | MsG0380013584.01.T01:CDS | 40.0% | |
| TGTGTAGCAGGACATTCATT+AGG | + | Chr3:41166225-41166244 | MsG0380013584.01.T01:CDS | 40.0% | |
| TTGAAGGGAATCCACCAATT+TGG | - | Chr3:41165913-41165932 | None:intergenic | 40.0% | |
| TTGGTCTAACGACTAATCCT+AGG | - | Chr3:41164890-41164909 | None:intergenic | 40.0% | |
| TTGTGTCCGTGTTCAATCAT+AGG | - | Chr3:41164773-41164792 | None:intergenic | 40.0% | |
| ! | CAATTTTGTTGCATGCAGGA+AGG | + | Chr3:41165786-41165805 | MsG0380013584.01.T01:intron | 40.0% |
| ! | CGTTAGTATTGTGTTGGTGT+CGG | + | Chr3:41165456-41165475 | MsG0380013584.01.T01:intron | 40.0% |
| ! | GAAGTTCTAGTAAAGGTTGG+AGG | - | Chr3:41165750-41165769 | None:intergenic | 40.0% |
| ! | TTCTCAAGTATTGCAGGGAA+AGG | + | Chr3:41166821-41166840 | MsG0380013584.01.T01:CDS | 40.0% |
| ! | TTTCGGTGCAATACTCGAAT+GGG | + | Chr3:41165978-41165997 | MsG0380013584.01.T01:CDS | 40.0% |
| !! | GAGATCTCATTAGTTCTAGC+TGG | + | Chr3:41163792-41163811 | MsG0380013584.01.T01:CDS | 40.0% |
| !! | TAATCCTAGGTAGCATTGAC+CGG | - | Chr3:41164877-41164896 | None:intergenic | 40.0% |
| !! | TTAGTACTGATCAGACCAAG+TGG | + | Chr3:41166024-41166043 | MsG0380013584.01.T01:CDS | 40.0% |
| !! | TTTGGAGCTAGAGCATTTTC+TGG | - | Chr3:41165895-41165914 | None:intergenic | 40.0% |
| !! | TTTTCGGTGCAATACTCGAA+TGG | + | Chr3:41165977-41165996 | MsG0380013584.01.T01:CDS | 40.0% |
| AATGGCCAATGCTCCAAATC+AGG | - | Chr3:41164568-41164587 | None:intergenic | 45.0% | |
| ACAAGAAGAGTTGGATGCCA+TGG | + | Chr3:41166454-41166473 | MsG0380013584.01.T01:CDS | 45.0% | |
| ACACCAGACACAACACAGAA+CGG | + | Chr3:41164238-41164257 | MsG0380013584.01.T01:intron | 45.0% | |
| ACGCAAGTGCACAAAGTAGA+AGG | - | Chr3:41165439-41165458 | None:intergenic | 45.0% | |
| AGCAGCATCCTCTTTCTCAT+TGG | - | Chr3:41166589-41166608 | None:intergenic | 45.0% | |
| AGGTTGGAGGATTCTCAATC+AGG | - | Chr3:41165737-41165756 | None:intergenic | 45.0% | |
| CAATTGAGAGCCAAAGTCAG+AGG | - | Chr3:41164665-41164684 | None:intergenic | 45.0% | |
| CATTTCATGTGTCTGGTCCA+AGG | + | Chr3:41163747-41163766 | MsG0380013584.01.T01:CDS | 45.0% | |
| CCCTATGCATTTCATGTGTC+TGG | + | Chr3:41163740-41163759 | MsG0380013584.01.T01:CDS | 45.0% | |
| GAGAAAAAGCCGAGTTAGCT+TGG | + | Chr3:41166361-41166380 | MsG0380013584.01.T01:CDS | 45.0% | |
| GAGACATCCAAGATGACCTT+CGG | + | Chr3:41166106-41166125 | MsG0380013584.01.T01:CDS | 45.0% | |
| GCTGTTGTGGTTGAAAAGCA+AGG | + | Chr3:41163698-41163717 | MsG0380013584.01.T01:CDS | 45.0% | |
| GGAAAAGGAAAAGGCTGTTG+TGG | + | Chr3:41163685-41163704 | MsG0380013584.01.T01:CDS | 45.0% | |
| GTCAGAGTCACCATGTCAAT+CGG | + | Chr3:41164916-41164935 | MsG0380013584.01.T01:intron | 45.0% | |
| TCTAATCAGCCAGTTGAAGC+AGG | - | Chr3:41164750-41164769 | None:intergenic | 45.0% | |
| TGTGTCTGGTCCAAGGAATT+TGG | + | Chr3:41163754-41163773 | MsG0380013584.01.T01:CDS | 45.0% | |
| ! | ATGCTCTAGCTCCAAATTGG+TGG | + | Chr3:41165899-41165918 | MsG0380013584.01.T01:CDS | 45.0% |
| ! | CGCTTCAATCTGAAGTGTGA+AGG | + | Chr3:41165499-41165518 | MsG0380013584.01.T01:intron | 45.0% |
| !! | TGGTGACTCTGACCGATTTT+TGG | - | Chr3:41164909-41164928 | None:intergenic | 45.0% |
| !!! | GCTGGTTTTGCACTTCAAGT+TGG | + | Chr3:41166249-41166268 | MsG0380013584.01.T01:CDS | 45.0% |
| AGCACGACACTCCATGGATT+AGG | - | Chr3:41164367-41164386 | None:intergenic | 50.0% | |
| ATGCTTCCTTCAAGCAGCGA+AGG | + | Chr3:41166399-41166418 | MsG0380013584.01.T01:CDS | 50.0% | |
| CTATGAAGCACGACACTCCA+TGG | - | Chr3:41164373-41164392 | None:intergenic | 50.0% | |
| CTCGCTTGGGAAAGCCTAAA+AGG | + | Chr3:41166132-41166151 | MsG0380013584.01.T01:CDS | 50.0% | |
| CTGGTGTATCCGTGCATCAT+AGG | - | Chr3:41164225-41164244 | None:intergenic | 50.0% | |
| GAAAAATAGGGGACTCTGGC+TGG | - | Chr3:41165408-41165427 | None:intergenic | 50.0% | |
| GCAGGACATTCATTAGGAGC+TGG | + | Chr3:41166231-41166250 | MsG0380013584.01.T01:CDS | 50.0% | |
| GGATGTCTCTTCGCATTGTG+TGG | - | Chr3:41166095-41166114 | None:intergenic | 50.0% | |
| TCAACTCCTTCGCTGCTTGA+AGG | - | Chr3:41166408-41166427 | None:intergenic | 50.0% | |
| TGTCAGACACGCCTAATCCA+TGG | + | Chr3:41164353-41164372 | MsG0380013584.01.T01:intron | 50.0% | |
| TGTCCGTTCTGTGTTGTGTC+TGG | - | Chr3:41164244-41164263 | None:intergenic | 50.0% | |
| ! | CTTTTAGGCTTTCCCAAGCG+AGG | - | Chr3:41166134-41166153 | None:intergenic | 50.0% |
| !! | ACAGCTTTTGGTGCACCACT+TGG | - | Chr3:41166042-41166061 | None:intergenic | 50.0% |
| !! | ACATGGTGACCGACCGATTT+TGG | - | Chr3:41165160-41165179 | None:intergenic | 50.0% |
| !! | GGGATCCTGATTTGGAGCAT+TGG | + | Chr3:41164560-41164579 | MsG0380013584.01.T01:intron | 50.0% |
| ATGACCTTCGGTTCCTCGCT+TGG | + | Chr3:41166118-41166137 | MsG0380013584.01.T01:CDS | 55.0% | |
| CGAGGAACCGAAGGTCATCT+TGG | - | Chr3:41166116-41166135 | None:intergenic | 55.0% | |
| CGGAAATGCATCTGGACCTG+TGG | + | Chr3:41164936-41164955 | MsG0380013584.01.T01:intron | 55.0% | |
| CGGTCGGTCACCATGTCAAT+CGG | + | Chr3:41165164-41165183 | MsG0380013584.01.T01:intron | 55.0% | |
| GTTGCCGGTCAATGCTACCT+AGG | + | Chr3:41164870-41164889 | MsG0380013584.01.T01:intron | 55.0% | |
| TGACCTTCGGTTCCTCGCTT+GGG | + | Chr3:41166119-41166138 | MsG0380013584.01.T01:CDS | 55.0% | |
| TTTCCCAAGCGAGGAACCGA+AGG | - | Chr3:41166125-41166144 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 41163626 | 41166854 | 41163626 | ID=MsG0380013584.01;Name=MsG0380013584.01 |
| Chr3 | mRNA | 41163626 | 41166854 | 41163626 | ID=MsG0380013584.01.T01;Parent=MsG0380013584.01;Name=MsG0380013584.01.T01;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|412 |
| Chr3 | exon | 41163626 | 41163813 | 41163626 | ID=MsG0380013584.01.T01:exon:552;Parent=MsG0380013584.01.T01 |
| Chr3 | exon | 41165804 | 41166854 | 41165804 | ID=MsG0380013584.01.T01:exon:553;Parent=MsG0380013584.01.T01 |
| Chr3 | CDS | 41163626 | 41163813 | 41163626 | ID=MsG0380013584.01.T01:cds;Parent=MsG0380013584.01.T01 |
| Chr3 | CDS | 41165804 | 41166854 | 41165804 | ID=MsG0380013584.01.T01:cds;Parent=MsG0380013584.01.T01 |
| Gene Sequence |
| Protein sequence |
