AlfalfaGEDB | MsG0480021838.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021838.01

KEGG: -
GO: -
PFAM: PF03803

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021838.01.T01	XP_003607391.1	81.143	350	12	2	1	296	1	350	0	560

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021838.01.T01	P47140	35.088	228	115	6	96	295	100	322	1.87E-30	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021838.01.T01	G7JRQ5	81.143	350	12	2	1	296	1	350	0.0	560

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048152.01	MsG0480021838.01	0.802072	6.671519e-49	3.237743e-46
MsG0080049069.01	MsG0480021838.01	0.803976	2.696123e-49	1.373762e-46
MsG0180000114.01	MsG0480021838.01	0.807467	4.984546e-50	2.778491e-47
MsG0180000355.01	MsG0480021838.01	0.808954	2.402363e-50	1.392320e-47
MsG0180000611.01	MsG0480021838.01	0.815190	1.049695e-51	7.187604e-49
MsG0180002547.01	MsG0480021838.01	0.800525	1.383764e-48	6.457231e-46
MsG0180002794.01	MsG0480021838.01	0.801588	8.389550e-49	4.021559e-46
MsG0180003357.01	MsG0480021838.01	0.804636	1.964645e-49	1.018121e-46
MsG0180003821.01	MsG0480021838.01	0.817306	3.531681e-52	2.562567e-49
MsG0180003885.01	MsG0480021838.01	0.828119	1.072970e-54	1.056682e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021838.01.T01	MTR_4g077510	81.143	350	12	2	1	296	1	350	0.0	560

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021838.01.T01	AT2G04940	82.178	202	36	0	95	296	191	392	2.10e-125	363

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Find 93 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTCTCTTTAGGAAAT+TGG	0.191081	4:-64991396	MsG0480021838.01.T01:intron
AAACGCATCATCAATTGAAC+AGG	0.391833	4:-64995634	MsG0480021838.01.T01:CDS
AAATTGGAGTAGTTCACAGG+CGG	0.709413	4:-64991380	MsG0480021838.01.T01:CDS
AACGCATCATCAATTGAACA+GGG	0.706558	4:-64995633	MsG0480021838.01.T01:CDS
AAGGTTGTTGGTGTTGGATT+TGG	0.351725	4:+64995703	None:intergenic
AATGACTACTTCTCAAGACA+TGG	0.617241	4:-64989203	MsG0480021838.01.T01:CDS
AATGTCCAATTCCACAAGCC+AGG	0.537197	4:+64990847	None:intergenic
ACTTCTCAAGACATGGAGGC+TGG	0.595206	4:-64989196	MsG0480021838.01.T01:intron
AGAAAATCGATCAAATGCCG+AGG	0.682752	4:-64995557	MsG0480021838.01.T01:CDS
AGAATCCTGGCTTGTGGAAT+TGG	0.325598	4:-64990852	MsG0480021838.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAACAGTTTACGTGTA+TGG	+	Chr4:64991121-64991140	None:intergenic	30.0%
AAACAAGAGACAAGAATATC+TGG	+	Chr4:64994806-64994825	None:intergenic	30.0%
AAGGGAATTTCAAAACTTTG+GGG	-	Chr4:64994696-64994715	MsG0480021838.01.T01:intron	30.0%
AATAGTCAGAAAGTTGGAAT+TGG	-	Chr4:64995404-64995423	MsG0480021838.01.T01:intron	30.0%
AATCATTGGATGCATGATTA+TGG	-	Chr4:64989371-64989390	MsG0480021838.01.T01:intron	30.0%
AATTCCAACTTTCTGACTAT+TGG	+	Chr4:64995405-64995424	None:intergenic	30.0%
ACTGCTTTAGTAACAATGTT+TGG	-	Chr4:64991949-64991968	MsG0480021838.01.T01:intron	30.0%
ATCGATCAAAAGTCAATACT+TGG	-	Chr4:64991216-64991235	MsG0480021838.01.T01:intron	30.0%
ATCTCTGGTAATTAGTAAGT+TGG	+	Chr4:64990010-64990029	None:intergenic	30.0%
ATGAATAATCTGTATGCTGA+GGG	-	Chr4:64990165-64990184	MsG0480021838.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	64988722	64995759	64988722	ID=MsG0480021838.01;Name=MsG0480021838.01
Chr4	mRNA	64988722	64995759	64988722	ID=MsG0480021838.01.T01;Parent=MsG0480021838.01;Name=MsG0480021838.01.T01;_AED=0.42;_eAED=0.42;_QI=0\|0.88\|0.9\|1\|0.77\|0.9\|10\|259\|296
Chr4	exon	64988722	64989011	64988722	ID=MsG0480021838.01.T01:exon:7204;Parent=MsG0480021838.01.T01
Chr4	exon	64989197	64989303	64989197	ID=MsG0480021838.01.T01:exon:7203;Parent=MsG0480021838.01.T01
Chr4	exon	64989384	64989461	64989384	ID=MsG0480021838.01.T01:exon:7202;Parent=MsG0480021838.01.T01
Chr4	exon	64990777	64990897	64990777	ID=MsG0480021838.01.T01:exon:7201;Parent=MsG0480021838.01.T01
Chr4	exon	64991342	64991403	64991342	ID=MsG0480021838.01.T01:exon:7200;Parent=MsG0480021838.01.T01
Chr4	exon	64991504	64991560	64991504	ID=MsG0480021838.01.T01:exon:7199;Parent=MsG0480021838.01.T01
Chr4	exon	64991699	64991764	64991699	ID=MsG0480021838.01.T01:exon:7198;Parent=MsG0480021838.01.T01
Chr4	exon	64994003	64994047	64994003	ID=MsG0480021838.01.T01:exon:7197;Parent=MsG0480021838.01.T01
Chr4	exon	64994152	64994193	64994152	ID=MsG0480021838.01.T01:exon:7196;Parent=MsG0480021838.01.T01
Chr4	exon	64995478	64995759	64995478	ID=MsG0480021838.01.T01:exon:7195;Parent=MsG0480021838.01.T01
Chr4	CDS	64995478	64995759	64995478	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64994152	64994193	64994152	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64994003	64994047	64994003	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64991699	64991764	64991699	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64991504	64991560	64991504	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64991342	64991403	64991342	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64990777	64990897	64990777	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64989384	64989461	64989384	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64989197	64989303	64989197	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	CDS	64988981	64989011	64988981	ID=MsG0480021838.01.T01:cds;Parent=MsG0480021838.01.T01
Chr4	three_prime_UTR	64988722	64988980	64988722	ID=MsG0480021838.01.T01:three_prime_utr;Parent=MsG0480021838.01.T01

Gene Sequence

>MsG0480021838.01.T01

ATGAATCGCTTAAAGCATGGTTGGCGCCTCATATCCAAATCCAACACCAACAACCTTCTCGATTCTCACCTAAACGCTCTTCAAACCAAGCTTTTCGGAACCGAAACGCATCATCAATTGAACAGGGACTTTTTCGTCAAACTCTGGGTTTCTGATGGCAAAATCCGAAACCCTAGAGCTAGAAAATCGATCAAATGCCGAGGTCTTGATCTTGATCCTAGATGGTTTTCTGCTTCATCTGTTCATGCTGATGCTGCTGCTGTCACCAGTAAACCTAAACCGGAAAATCGTTATGGCATTGTAGATGCATGCTACCCACAGTCGCCTGTAGGTTTAATTCGTGAACAGAGCAACCTCATTACCAGACAGTTGCTTCGTCTAAGGAGGCCTTTTGTTGCACACATAACTGATGCTATGGGGAATGAGCTCTTTAGGGTCCGTAGACCCTTTTGGTGGATAACAAGCTCAATTTATGCTGAAATTGATGGTAAGGAAATTGGAGTAGTTCACAGGCGGTGGCATCTCTGGAGAAGAATCTATGATTTGTACCTCGGGAATCAGCAATTTGCGGTGGTTGAGAATCCTGGCTTGTGGAATTGGACATTCACCTTGAAAGATGCTGATGGTGAGGTGCTTGCTCAAATAGATCGTGATTGGAGGGGTTTTGGCTTTGAGATTCTAACTGATGCTGGTCAGTATGTGATTCGATTTGGAAATTCTGATCCCAGCTCCAAGATTGGCCTTGCTAATGCGATTGAAGACCTTGAAGTCAGACGTCCACTGACCCTTGCCGAGAGAGCAGTTGCTGTAGCTCTTGCAATATCACTAGATAATGACTACTTCTCAAGACATGGAGGCTGGGGATTACCCTTCATTGACGTCGGCGAGTAA

Protein sequence

>MsG0480021838.01.T01

MNRLKHGWRLISKSNTNNLLDSHLNALQTKLFGTETHHQLNRDFFVKLWVSDGKIRNPRARKSIKCRGLDLDPRWFSASSVHADAAAVTSKPKPENRYGIVDACYPQSPVGLIREQSNLITRQLLRLRRPFVAHITDAMGNELFRVRRPFWWITSSIYAEIDGKEIGVVHRRWHLWRRIYDLYLGNQQFAVVENPGLWNWTFTLKDADGEVLAQIDRDWRGFGFEILTDAGQYVIRFGNSDPSSKIGLANAIEDLEVRRPLTLAERAVAVALAISLDNDYFSRHGGWGLPFIDVGE*