AlfalfaGEDB | MsG0580028582.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028582.01

KEGG: K20185
GO: GO:0031083
PFAM: PF06320

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028582.01.T01	XP_003615993.2	94.074	135	8	0	1	135	1	135	3.58E-87	260

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028582.01.T01	O22929	59.649	114	46	0	22	135	37	150	1.16E-45	148

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048152.01	MsG0580028582.01	0.807698	4.450890e-50	2.495845e-47
MsG0080048383.01	MsG0580028582.01	0.827565	1.458105e-54	1.412792e-51
MsG0080048774.01	MsG0580028582.01	0.814834	1.259170e-51	8.539424e-49
MsG0080048784.01	MsG0580028582.01	0.814994	1.160357e-51	7.903771e-49
MsG0080048815.01	MsG0580028582.01	0.803358	3.621934e-49	1.816272e-46
MsG0080049011.01	MsG0580028582.01	0.813850	2.077576e-51	1.371945e-48
MsG0080049135.01	MsG0580028582.01	0.803150	3.999789e-49	1.995165e-46
MsG0180000114.01	MsG0580028582.01	0.812746	3.630544e-51	2.327184e-48
MsG0180000205.01	MsG0580028582.01	0.803623	3.191630e-49	1.611498e-46
MsG0180000384.01	MsG0580028582.01	0.821471	3.967774e-53	3.230905e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028582.01.T01	MTR_5g074880	94.074	135	8	0	1	135	1	135	4.34e-91	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028582.01.T01	AT2G30330	59.649	114	46	0	22	135	37	150	1.18e-46	148
MsG0580028582.01.T01	AT2G30330	48.039	102	52	1	22	123	37	137	1.06e-28	102

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Find 23 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGGAGACTTTGAGAAT+TGG	0.397575	5:-82785298	MsG0580028582.01.T01:CDS
AACACACGCGCAGAATCAAA+GGG	0.580106	5:-82787323	MsG0580028582.01.T01:CDS
AAGAAAAGCAGAACGCGTCT+CGG	0.526602	5:-82787207	MsG0580028582.01.T01:CDS
AATACAAAGAAACAAGTGAA+TGG	0.531661	5:-82787360	None:intergenic
ACATCCAGAATAAAGATACA+AGG	0.617763	5:+82785052	None:intergenic
ACGCGCAGAATCAAAGGGAT+TGG	0.518596	5:-82787318	MsG0580028582.01.T01:CDS
ACGCGTCTCGGATCTGTTAG+TGG	0.461253	5:-82787195	MsG0580028582.01.T01:CDS
CTGTTAGTGGAAGCAGTGAA+TGG	0.540308	5:-82787182	MsG0580028582.01.T01:CDS
GCAACCTGCAAGATCACTCT+TGG	0.532927	5:+82785219	None:intergenic
GGCTTCTAATGATGTAGCAC+TGG	0.472814	5:-82784998	MsG0580028582.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAACATACTTCCATTCA+GGG	+	Chr5:82786283-82786302	None:intergenic	30.0%
ACATCCAGAATAAAGATACA+AGG	+	Chr5:82787260-82787279	None:intergenic	30.0%
ATTCACCAATAACCCAAAAA+TGG	+	Chr5:82786396-82786415	None:intergenic	30.0%
CATATGAGCAAGAATAAAGA+TGG	-	Chr5:82786822-82786841	MsG0580028582.01.T01:intron	30.0%
CATTAACATGAACATGTACA+AGG	+	Chr5:82786626-82786645	None:intergenic	30.0%
CTGATTGAATTTGTAGTGTT+TGG	-	Chr5:82785441-82785460	MsG0580028582.01.T01:intron	30.0%
CTTTATTGTGCACCATAATT+TGG	+	Chr5:82786452-82786471	None:intergenic	30.0%
GAAGAGAGAGTAATAGTTTA+TGG	-	Chr5:82785808-82785827	MsG0580028582.01.T01:intron	30.0%
GACGGAATTCATATACTTTA+GGG	-	Chr5:82785777-82785796	MsG0580028582.01.T01:intron	30.0%
TATGAGCAAGAATAAAGATG+GGG	-	Chr5:82786824-82786843	MsG0580028582.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	82784954	82787377	82784954	ID=MsG0580028582.01;Name=MsG0580028582.01
Chr5	mRNA	82784954	82787377	82784954	ID=MsG0580028582.01.T01;Parent=MsG0580028582.01;Name=MsG0580028582.01.T01;_AED=0.50;_eAED=0.50;_QI=14\|1\|1\|1\|1\|1\|2\|278\|135
Chr5	exon	82784954	82785321	82784954	ID=MsG0580028582.01.T01:exon:21333;Parent=MsG0580028582.01.T01
Chr5	exon	82787046	82787377	82787046	ID=MsG0580028582.01.T01:exon:21332;Parent=MsG0580028582.01.T01
Chr5	five_prime_UTR	82787364	82787377	82787364	ID=MsG0580028582.01.T01:five_prime_utr;Parent=MsG0580028582.01.T01
Chr5	CDS	82787046	82787363	82787046	ID=MsG0580028582.01.T01:cds;Parent=MsG0580028582.01.T01
Chr5	CDS	82785232	82785321	82785232	ID=MsG0580028582.01.T01:cds;Parent=MsG0580028582.01.T01
Chr5	three_prime_UTR	82784954	82785231	82784954	ID=MsG0580028582.01.T01:three_prime_utr;Parent=MsG0580028582.01.T01

Gene Sequence

>MsG0580028582.01.T01

ATGGAAGAACGCGATGTTAACACACGCGCAGAATCAAAGGGATTGGAAGATTCATTACAAAACCTAATTCACATTCATCATCAAAAATCTCTCATTCTCACCAATCAAACCGAAAAAGCGAAGAAAGATGCAATAAGAAAAGCAGAACGCGTCTCGGATCTGTTAGTGGAAGCAGTGAATGGCGGTGTTCAAGATTCGTTTATTTATCAGAAGAGAATTGAGCTTGAAATTCGTGCTCTTGCTGTAACTATTTCGAGATTTGTGAAACAAACGGATCAGTGGCTTAATGCTACTCATTCTCTTAACACTGCTCTCAAGGAAATTGGAGACTTTGAGAATTGGATGAAGATCATGGAATACGATTTTAAAAGTATTAATGCAGCTATACAAAACATTCACCAAGAGTGA

Protein sequence

>MsG0580028582.01.T01

MEERDVNTRAESKGLEDSLQNLIHIHHQKSLILTNQTEKAKKDAIRKAERVSDLLVEAVNGGVQDSFIYQKRIELEIRALAVTISRFVKQTDQWLNATHSLNTALKEIGDFENWMKIMEYDFKSINAAIQNIHQE*