AlfalfaGEDB | MsG0880043417.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043417.01

KEGG: K13648
GO: GO:0016757
PFAM: PF01501

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043417.01.T01	RHN40101.1	93.421	608	15	2	19	601	5	612	0	1174

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043417.01.T01	Q9LE59	67.547	644	163	5	1	601	33	673	0	893

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043417.01.T01	A0A396GIV4	93.421	608	15	2	19	601	5	612	0.0	1174

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048773.01	MsG0880043417.01	0.829994	3.768684e-55	3.920117e-52
MsG0080048777.01	MsG0880043417.01	0.867659	1.162850e-65	4.091469e-62
MsG0080048780.01	MsG0880043417.01	0.817107	3.914104e-52	2.824694e-49
MsG0080048876.01	MsG0880043417.01	0.808906	2.459686e-50	1.423716e-47
MsG0180000120.01	MsG0880043417.01	0.831206	1.904122e-55	2.052015e-52
MsG0180000292.01	MsG0880043417.01	0.829946	3.872413e-55	4.022364e-52
MsG0180000639.01	MsG0880043417.01	0.812017	5.238240e-51	3.292784e-48
MsG0180000671.01	MsG0880043417.01	0.814175	1.760996e-51	1.173209e-48
MsG0180000678.01	MsG0880043417.01	0.815177	1.056708e-51	7.232934e-49
MsG0180001170.01	MsG0880043417.01	0.808566	2.908703e-50	1.668661e-47

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043417.01.T01	MTR_8g033360	89.882	593	14	3	19	565	5	597	0.0	1076
MsG0880043417.01.T01	MTR_7g075840	77.958	617	103	5	10	601	56	664	0.0	965
MsG0880043417.01.T01	MTR_3g107930	52.786	646	240	6	6	599	31	663	0.0	667
MsG0880043417.01.T01	MTR_3g107930	60.878	524	180	2	101	599	63	586	0.0	665
MsG0880043417.01.T01	MTR_2g027740	63.193	451	162	1	150	600	220	666	0.0	627
MsG0880043417.01.T01	MTR_8g092000	58.628	452	180	1	150	601	136	580	0.0	581
MsG0880043417.01.T01	MTR_2g015550	48.908	458	221	5	150	600	82	533	5.05e-164	479
MsG0880043417.01.T01	MTR_7g055600	56.934	411	171	4	192	599	25	432	1.04e-159	464
MsG0880043417.01.T01	MTR_7g057530	56.934	411	171	4	192	599	25	432	1.04e-159	464
MsG0880043417.01.T01	MTR_4g109890	47.323	467	228	5	141	599	78	534	2.12e-154	454

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043417.01.T01	AT3G61130	67.547	644	163	5	1	601	33	673	0.0	893
MsG0880043417.01.T01	AT4G38270	52.443	614	242	7	33	601	68	676	0.0	661
MsG0880043417.01.T01	AT4G38270	52.104	618	242	7	33	601	68	680	0.0	657
MsG0880043417.01.T01	AT2G46480	57.736	530	194	5	98	601	15	540	0.0	627
MsG0880043417.01.T01	AT2G46480	57.736	530	194	5	98	601	28	553	0.0	626
MsG0880043417.01.T01	AT5G47780	62.749	451	164	1	150	600	169	615	0.0	626
MsG0880043417.01.T01	AT2G46480	54.340	530	187	6	98	601	15	515	0.0	571
MsG0880043417.01.T01	AT2G46480	54.340	530	187	6	98	601	28	528	0.0	570
MsG0880043417.01.T01	AT3G25140	56.161	422	176	5	184	599	139	557	8.85e-171	497
MsG0880043417.01.T01	AT1G18580	48.172	465	225	6	141	597	78	534	1.29e-159	468

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Find 152 sgRNAs with CRISPR-Local

Find 563 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGTCAACATGCTTT+AGG	0.370001	8:+24518618	MsG0880043417.01.T01:CDS
AAAGAGTATTATTTCAAGGC+AGG	0.473099	8:+24519486	MsG0880043417.01.T01:CDS
AACAGCTGAGTTCACAACAA+CGG	0.690951	8:-24519081	None:intergenic
AACTTTGATCCAAATGCTTG+TGG	0.562703	8:+24519786	MsG0880043417.01.T01:CDS
AAGCAAGAATCAATGTGGAA+AGG	0.599134	8:-24520432	None:intergenic
AAGCACATTCCTCAGTCAGT+TGG	0.593627	8:+24518896	MsG0880043417.01.T01:CDS
AAGCTGGGGACATTACCTCC+AGG	0.613770	8:+24520023	MsG0880043417.01.T01:CDS
AAGGAAACCCCTCGCTTTGG+CGG	0.468661	8:-24512866	None:intergenic
AAGTTCTGTCAAAGGCACGG+GGG	0.753594	8:+24518787	MsG0880043417.01.T01:CDS
AATAAATCGTGGCATGTCCT+TGG	0.472321	8:+24520080	MsG0880043417.01.T01:CDS

Showing 1 to 10 of 152 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTAATATCATTTGAGG+TGG	-	Chr8:24518022-24518041	None:intergenic	30.0%
AACATAAAGACAATGAGAGT+TGG	-	Chr8:24519267-24519286	None:intergenic	30.0%
AACCATGAATTAACATTTGG+AGG	-	Chr8:24517372-24517391	None:intergenic	30.0%
AACGTAATAAATGTAGTGTC+CGG	+	Chr8:24513075-24513094	MsG0880043417.01.T01:intron	30.0%
AACTATCACTAACATAAGGA+AGG	-	Chr8:24517656-24517675	None:intergenic	30.0%
AATCTTTACTGAAAATGGAC+TGG	+	Chr8:24513991-24514010	MsG0880043417.01.T01:intron	30.0%
AATTCAGGGTGAAAACATAA+AGG	+	Chr8:24515226-24515245	MsG0880043417.01.T01:intron	30.0%
AGACTATCCAAATATCACAT+TGG	-	Chr8:24516232-24516251	None:intergenic	30.0%
AGTGCATAATGATAAAGACT+GGG	-	Chr8:24519035-24519054	None:intergenic	30.0%
ATACAATACCTTTATTCCCA+CGG	-	Chr8:24514103-24514122	None:intergenic	30.0%

Showing 1 to 10 of 563 entries

Previous1 2 3 4 5…57Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	24512863	24520605	24512863	ID=MsG0880043417.01;Name=MsG0880043417.01
Chr8	mRNA	24512863	24520605	24512863	ID=MsG0880043417.01.T01;Parent=MsG0880043417.01;Name=MsG0880043417.01.T01;_AED=0.42;_eAED=0.45;_QI=210\|0.6\|0.63\|1\|0.9\|0.81\|11\|328\|601
Chr8	exon	24512863	24512999	24512863	ID=MsG0880043417.01.T01:exon:9070;Parent=MsG0880043417.01.T01
Chr8	exon	24514908	24515035	24514908	ID=MsG0880043417.01.T01:exon:9071;Parent=MsG0880043417.01.T01
Chr8	exon	24516887	24516921	24516887	ID=MsG0880043417.01.T01:exon:9072;Parent=MsG0880043417.01.T01
Chr8	exon	24517166	24517288	24517166	ID=MsG0880043417.01.T01:exon:9073;Parent=MsG0880043417.01.T01
Chr8	exon	24517408	24517471	24517408	ID=MsG0880043417.01.T01:exon:9074;Parent=MsG0880043417.01.T01
Chr8	exon	24517547	24517593	24517547	ID=MsG0880043417.01.T01:exon:9075;Parent=MsG0880043417.01.T01
Chr8	exon	24518340	24518462	24518340	ID=MsG0880043417.01.T01:exon:9076;Parent=MsG0880043417.01.T01
Chr8	exon	24518537	24518673	24518537	ID=MsG0880043417.01.T01:exon:9077;Parent=MsG0880043417.01.T01
Chr8	exon	24518758	24519115	24518758	ID=MsG0880043417.01.T01:exon:9078;Parent=MsG0880043417.01.T01
Chr8	exon	24519306	24519893	24519306	ID=MsG0880043417.01.T01:exon:9079;Parent=MsG0880043417.01.T01
Chr8	exon	24520002	24520605	24520002	ID=MsG0880043417.01.T01:exon:9080;Parent=MsG0880043417.01.T01
Chr8	five_prime_UTR	24512863	24512999	24512863	ID=MsG0880043417.01.T01:five_prime_utr;Parent=MsG0880043417.01.T01
Chr8	five_prime_UTR	24514908	24514980	24514908	ID=MsG0880043417.01.T01:five_prime_utr;Parent=MsG0880043417.01.T01
Chr8	CDS	24514981	24515035	24514981	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24516887	24516921	24516887	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24517166	24517288	24517166	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24517408	24517471	24517408	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24517547	24517593	24517547	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24518340	24518462	24518340	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24518537	24518673	24518537	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24518758	24519115	24518758	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24519306	24519893	24519306	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	CDS	24520002	24520277	24520002	ID=MsG0880043417.01.T01:cds;Parent=MsG0880043417.01.T01
Chr8	three_prime_UTR	24520278	24520605	24520278	ID=MsG0880043417.01.T01:three_prime_utr;Parent=MsG0880043417.01.T01

Gene Sequence

>MsG0880043417.01.T01

ATGGGGCCAGTTTGTTGTCCCGTTGGGCGCAAACAAAAAGCAGAGGGTATTCTCGATCAAGATGATATTTCAGCTGCTGCAAATAGACAGGTTTTCGATGTTATTGTATCCAGCACAGATGATATGGGGCCTTTGAGTCTTGACAATTTTAGAAAAAATATGTCTGCGTCATGGAGAGTTGTTGGATTAGAGACTTCAAATGCTGCCTATGAGGTAAAGCAACCAACAACACATGTTACACAAGAAAAACGAAAGGTGAAGGAAGGAAGATCTTCAGAGGGTCTTACTCACTGGACTGATAGCCCTACACGACAAGTCCGAAGGCAATTAATAGAAAAAAGGCAGGAAAAGCGTGCTGCTGAGTTGGTAAAGATGGACAATGAAGTAATCGTAAAACTTGAAAATGAAGCTATTGAACGTTCAAGATCGTTGAGTCAGCCGTACTGGATCATTATGGCTAGGGTATATGTGAGTATCGCGCAGATGAACAACAAGCTTGAACTGTTGCAAGAGCTGCAGTCTAGGCTCAAAGAGAGTCAACATGCTTTAGGTGATGCAATTGCTGATTCAGATCTTCATCACAGTACACGTCAAGAAATAAAGGCTATGGGCCAAGTTCTGTCAAAGGCACGGGGGCAATTGTATGACAGCAAGTTGGTCACTGGAAAATTGAGAGCAATGCTACAGACAGCTGATGAGAAAGTTAGGAGCTTGAAGAAACAAAGCACATTCCTCAGTCAGTTGGCTGCCAAGACCATACCAAGTGGAATTCATTGCTTATCAATGCGCCTCACAATAGATTACTACCTCCTTCCTCCTGAAAAAAGGAAGTTCCCTAGGAGTGAGAACTTGGAGAATCCCAGTCTTTATCATTATGCACTATTTTCAGACAATGTCTTGGCTGCATCCGTTGTTGTGAACTCAGCTGTTACAAATGCAAAGGATCCTTCAAAGCATGTTTTCCATCTTGTTACTGATAAACTCAATTTTGGAGCCATGAACATGTGGTTTCTTTTGAACCCTCCTGGAAAAGCTACAATCCATGTTCAAAATGTAGATGATTTTAAGTGGTTGAACTCATCCTACTGCCCTGTATTGCGGCAGCTTGAATCTGCAAAAATGAAAGAGTATTATTTCAAGGCAGGCCATCCAACCACCCTTTCTTCTAGTGCTTCCAATATGAAATATAGAAACCCAAAATATCTCTCGATGCTCAACCATCTTAGATTCTATCTTCCAGAAGTTTATCCTAAATTAGATAAAATCCTTTTTCTTGATGATGACATCGTTGTTCAGAAGGATTTGACAGGATTATGGGAAGTTGATCTTCAGGGGAAAGTAAATGGTGCAGTTGAAACATGTGGTGAAAGCTTTCACCGATTTGACAAATATCTTAACTTTTCAAATCCACATATTGCAAGAAACTTTGATCCAAATGCTTGTGGTTGGGCATATGGCATGAACGTATTTGATCTCAAGGAGTGGAAAAAGAAGGATATCACTGGCATATATCACAAATGGCAAAATATGAATGAAGACAGGGTGCTTTGGAAGCTGGGGACATTACCTCCAGGACTAATGACATTCTATGGGTTGACACATCCACTAAATAAATCGTGGCATGTCCTTGGTTTGGGTTATAGTCCAACTGTAGATCGATCAATGATAGAGAATGCAGCAGTTGTACATTACAATGGTAATATGAAGCCGTGGCTAGCGATTGCCATGACAAAGTATCGGCCTTACTGGACTAAATATGTTAAATACAATCATTCCTATCTGCAGAAATGCAAGTTACATGAATAG

Protein sequence

>MsG0880043417.01.T01

MGPVCCPVGRKQKAEGILDQDDISAAANRQVFDVIVSSTDDMGPLSLDNFRKNMSASWRVVGLETSNAAYEVKQPTTHVTQEKRKVKEGRSSEGLTHWTDSPTRQVRRQLIEKRQEKRAAELVKMDNEVIVKLENEAIERSRSLSQPYWIIMARVYVSIAQMNNKLELLQELQSRLKESQHALGDAIADSDLHHSTRQEIKAMGQVLSKARGQLYDSKLVTGKLRAMLQTADEKVRSLKKQSTFLSQLAAKTIPSGIHCLSMRLTIDYYLLPPEKRKFPRSENLENPSLYHYALFSDNVLAASVVVNSAVTNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVQNVDDFKWLNSSYCPVLRQLESAKMKEYYFKAGHPTTLSSSASNMKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLTGLWEVDLQGKVNGAVETCGESFHRFDKYLNFSNPHIARNFDPNACGWAYGMNVFDLKEWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYSPTVDRSMIENAAVVHYNGNMKPWLAIAMTKYRPYWTKYVKYNHSYLQKCKLHE*