AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028846.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028846.01.T01 MTR_5g076480 83.058 242 7 2 6 246 1 209 5.97e-139 389
MsG0580028846.01.T01 MTR_3g064310 54.000 250 72 6 6 246 2 217 8.83e-82 244
MsG0580028846.01.T01 MTR_0160s0040 29.126 206 109 4 27 230 6 176 1.31e-27 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028846.01.T01 AT1G17200 47.107 242 87 6 6 245 1 203 2.66e-64 199
MsG0580028846.01.T01 AT3G14380 45.213 188 69 2 43 229 24 178 1.09e-42 143
MsG0580028846.01.T01 AT1G17200 41.958 143 48 3 104 245 1 109 9.45e-28 102
MsG0580028846.01.T01 AT5G54980 30.653 199 100 6 39 234 29 192 1.05e-16 76.3

Find 72 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTGATCTTGGTGCTTTC+AGG 0.132194 5:-87522262 MsG0580028846.01.T01:intron
TTTCACTCATATCCTCTTAT+AGG 0.157418 5:-87520141 MsG0580028846.01.T01:CDS
ATTGAGTTTGGTTGGATAAT+TGG 0.178392 5:+87522560 None:intergenic
AATGCATCATTATATCATTA+TGG 0.193940 5:+87522655 None:intergenic
ATCAAAACTATAAATCTAAA+AGG 0.252172 5:+87519995 MsG0580028847.01.T02:three_prime_UTR
GTTCTATACCTTGCTGAATA+TGG 0.284110 5:-87520274 MsG0580028846.01.T01:CDS
TCTGTTGCCTATTCTGATCT+TGG 0.296237 5:-87522272 MsG0580028846.01.T01:CDS
TACAAGATCTTCAATTGAAA+TGG 0.304475 5:-87522441 MsG0580028846.01.T01:CDS
ACTAATGCACAATAATAATA+TGG 0.315066 5:-87522489 MsG0580028846.01.T01:exon
ATAAAGGTACAAATTGAGTT+TGG 0.324980 5:+87522548 None:intergenic
ATGCATCATTATATCATTAT+GGG 0.336044 5:+87522656 None:intergenic
AAAGGAAATGACCAACGATT+AGG 0.339951 5:+87520013 MsG0580028847.01.T02:three_prime_UTR
TTCAACTATGCCTAAGGCTT+GGG 0.359587 5:-87521402 MsG0580028846.01.T01:CDS
TGGGAGTTGTTGACTTGTGC+TGG 0.377358 5:+87520097 MsG0580028847.01.T02:three_prime_UTR
AGTTCAGCTTGTGGATCTTT+CGG 0.384816 5:-87520232 MsG0580028846.01.T01:CDS
ATTAGTATATAGCTACAAAT+TGG 0.386782 5:+87522506 None:intergenic
AAGGAAATGACCAACGATTA+GGG 0.397305 5:+87520014 MsG0580028847.01.T02:three_prime_UTR
AAGTAACAAGGCCAACTACT+AGG 0.408852 5:+87522620 None:intergenic
GCTGTTACACATAAACAAAT+AGG 0.414973 5:+87522338 None:intergenic
AATTCTGAGGAAAATGAGTA+TGG 0.430525 5:-87522296 MsG0580028846.01.T01:CDS
ACTAGCATTGCTGCTTTCAA+TGG 0.434764 5:-87520067 MsG0580028846.01.T01:CDS
CTTCAACTATGCCTAAGGCT+TGG 0.448431 5:-87521403 MsG0580028846.01.T01:CDS
TTTGCTAAATAGCCTATAAG+AGG 0.458378 5:+87520129 MsG0580028847.01.T02:three_prime_UTR
AGCTTCATTGCTACGTATTG+TGG 0.458863 5:-87522381 MsG0580028846.01.T01:CDS
AATGCTAACTCCCTAGTAGT+TGG 0.459679 5:-87522631 MsG0580028846.01.T01:five_prime_UTR
ACAAGATCTTCAATTGAAAT+GGG 0.465265 5:-87522440 MsG0580028846.01.T01:CDS
AGGTACAAATTGAGTTTGGT+TGG 0.466935 5:+87522552 None:intergenic
GTAGTTGATGAGGAATTTGA+AGG 0.468758 5:-87522410 MsG0580028846.01.T01:CDS
GAAAGCACCAAGATCAGAAT+AGG 0.484914 5:+87522265 None:intergenic
AACTTGTGTGCGGAATGTTT+TGG 0.487574 5:+87521295 MsG0580028847.01.T02:three_prime_UTR
CATGTACTTTGTTATCCACC+AGG 0.504588 5:+87519891 MsG0580028847.01.T02:three_prime_UTR
ACCTACATAATCCTAGCTGC+TGG 0.505252 5:-87520313 MsG0580028846.01.T01:CDS
GAGGGAGTCATAATATTGTA+AGG 0.510315 5:+87520040 MsG0580028847.01.T02:three_prime_UTR
CCGTCCTTCAACTATGCCTA+AGG 0.510562 5:-87521408 MsG0580028846.01.T01:CDS
CTTAGGCATAGTTGAAGGAC+GGG 0.514097 5:+87521409 MsG0580028847.01.T02:three_prime_UTR
AGTTATCACATTTATTGCTG+TGG 0.518652 5:-87520179 MsG0580028846.01.T01:CDS
ATTCATGTACACATCACAAA+GGG 0.551225 5:+87519922 MsG0580028847.01.T02:three_prime_UTR
CATGCCAATGGTATTTGTGC+AGG 0.554512 5:-87521467 MsG0580028846.01.T01:CDS
CACACAAGTTAACTCACGTT+CGG 0.555463 5:-87521282 MsG0580028846.01.T01:intron
AGTAACAAGGCCAACTACTA+GGG 0.557795 5:+87522621 None:intergenic
CTCCCTCTGTCCCTAATCGT+TGG 0.562122 5:-87520024 MsG0580028846.01.T01:three_prime_UTR
CAGCAATGCTAGTGTCCTTG+TGG 0.563670 5:+87520077 MsG0580028847.01.T02:three_prime_UTR
GGGAAATTCAGTAGTTGATG+AGG 0.565988 5:-87522420 MsG0580028846.01.T01:CDS
GAATATGGAGTCCCTACTGC+AGG 0.568100 5:-87520259 MsG0580028846.01.T01:CDS
AGCAATGCTAGTGTCCTTGT+GGG 0.569064 5:+87520078 MsG0580028847.01.T02:three_prime_UTR
GCTGAACTCCATCCTGCAGT+AGG 0.577795 5:+87520247 MsG0580028847.01.T02:three_prime_UTR
TCCAGCAGCTAGGATTATGT+AGG 0.582929 5:+87520312 MsG0580028847.01.T02:three_prime_UTR
CTGAACTCCATCCTGCAGTA+GGG 0.588006 5:+87520248 MsG0580028847.01.T02:three_prime_UTR
CATTATGCTGAAGAATTCTG+AGG 0.589250 5:-87522309 MsG0580028846.01.T01:CDS
CAAGCCTTAGGCATAGTTGA+AGG 0.590779 5:+87521404 MsG0580028847.01.T02:three_prime_UTR
CACAATAATAATATGGACAA+GGG 0.592027 5:-87522482 MsG0580028846.01.T01:CDS
AGGTATTTGGTGCATGCCAA+TGG 0.592552 5:-87521479 MsG0580028846.01.T01:CDS
TTAATACAGCTCCAGCAGCT+AGG 0.598816 5:+87520302 MsG0580028847.01.T02:three_prime_UTR
ATATCCTGCACAAATACCAT+TGG 0.600027 5:+87521463 MsG0580028847.01.T02:three_prime_UTR
CCTTAGGCATAGTTGAAGGA+CGG 0.602862 5:+87521408 MsG0580028847.01.T02:three_prime_UTR
GCAGGATGGAGTTCAGCTTG+TGG 0.603477 5:-87520241 MsG0580028846.01.T01:CDS
GACCAACGATTAGGGACAGA+GGG 0.609734 5:+87520022 MsG0580028847.01.T02:three_prime_UTR
TGCATCATTATATCATTATG+GGG 0.615612 5:+87522657 None:intergenic
ATGGAGTCCCTACTGCAGGA+TGG 0.616514 5:-87520255 MsG0580028846.01.T01:CDS
GTACATGAATAATTATATCC+TGG 0.624732 5:-87519909 MsG0580028846.01.T01:three_prime_UTR
TATTCATGTACACATCACAA+AGG 0.633588 5:+87519921 MsG0580028847.01.T02:three_prime_UTR
GCACAATAATAATATGGACA+AGG 0.635127 5:-87522483 MsG0580028846.01.T01:CDS
CATGAATAATTATATCCTGG+TGG 0.635470 5:-87519906 MsG0580028846.01.T01:three_prime_UTR
AATATAAGATAGTTATAACA+AGG 0.663165 5:+87519857 MsG0580028847.01.T02:three_prime_UTR
TGACCAACGATTAGGGACAG+AGG 0.671807 5:+87520021 MsG0580028847.01.T02:three_prime_UTR
TAGGGACTCCATATTCAGCA+AGG 0.672967 5:+87520266 MsG0580028847.01.T02:three_prime_UTR
ACAAGTCAACAACTCCCACA+AGG 0.673400 5:-87520092 MsG0580028846.01.T01:CDS
ATATTGCTTTGAAAGTAACA+AGG 0.684229 5:+87522608 None:intergenic
TGCTGGAGCTGTATTAACAG+AGG 0.687633 5:-87520296 MsG0580028846.01.T01:CDS
TTAGGCATAGTTGAAGGACG+GGG 0.688488 5:+87521410 MsG0580028847.01.T02:three_prime_UTR
TTTCAAGTAAGATATTGACC+TGG 0.690976 5:+87521363 MsG0580028847.01.T02:three_prime_UTR
AACGTGAGTTAACTTGTGTG+CGG 0.705082 5:+87521285 MsG0580028847.01.T02:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAATAAAAATTATAG+GGG - Chr5:87521915-87521934 MsG0580028846.01.T01:intron 10.0%
!! CAAAAGTAAATAAAAATTAT+AGG - Chr5:87521913-87521932 MsG0580028846.01.T01:intron 10.0%
!!! AATTTGTTTTTTTTATTGAT+AGG - Chr5:87520584-87520603 MsG0580028846.01.T01:intron 10.0%
!!! ATTTTAAACAAATTTTATCT+AGG + Chr5:87520705-87520724 MsG0580028847.01.T02:three_prime_UTR 10.0%
!!! ATTTTTACATCAAAATTTAA+AGG + Chr5:87522122-87522141 None:intergenic 10.0%
!!! TCTAAAATATTAATTTTAGT+AGG - Chr5:87521584-87521603 MsG0580028846.01.T01:intron 10.0%
!!! TTTTAAACAAATTTTATCTA+GGG + Chr5:87520704-87520723 MsG0580028847.01.T02:three_prime_UTR 10.0%
!! AAATAATATCCTTATGTTTA+TGG + Chr5:87520360-87520379 MsG0580028847.01.T02:three_prime_UTR 15.0%
!! AAGTAAATAAAAATTATAGG+GGG - Chr5:87521916-87521935 MsG0580028846.01.T01:intron 15.0%
!! AGCAAAAAAACTATAAAATT+TGG + Chr5:87520322-87520341 MsG0580028847.01.T02:three_prime_UTR 15.0%
!! ATCAAAACTATAAATCTAAA+AGG + Chr5:87522551-87522570 None:intergenic 15.0%
!! CTGTTAAATATTCATATAAA+AGG - Chr5:87521848-87521867 MsG0580028846.01.T01:intron 15.0%
!! TAAAAAATCCAAATATTACA+GGG - Chr5:87522071-87522090 MsG0580028846.01.T01:intron 15.0%
!!! GAATTATATTTTAAGTCAAT+AGG - Chr5:87520817-87520836 MsG0580028846.01.T01:intron 15.0%
!!! TTTAAACAAATTTTATCTAG+GGG + Chr5:87520703-87520722 MsG0580028847.01.T02:three_prime_UTR 15.0%
!!! TTTTTTGTGGAAAAAAATAA+AGG + Chr5:87520014-87520033 MsG0580028847.01.T02:three_prime_UTR 15.0%
!! AACATTCAAATTGAAAATGA+GGG - Chr5:87521943-87521962 MsG0580028846.01.T01:intron 20.0%
!! AAGGATAGAAAATAATTATC+AGG - Chr5:87521809-87521828 MsG0580028846.01.T01:intron 20.0%
!! AATGCATCATTATATCATTA+TGG + Chr5:87519891-87519910 MsG0580028847.01.T02:three_prime_UTR 20.0%
!! ACTAATGCACAATAATAATA+TGG - Chr5:87520054-87520073 MsG0580028846.01.T01:exon 20.0%
!! ATGCATCATTATATCATTAT+GGG + Chr5:87519890-87519909 MsG0580028847.01.T02:three_prime_UTR 20.0%
!! ATTAGTATATAGCTACAAAT+TGG + Chr5:87520040-87520059 MsG0580028847.01.T02:three_prime_UTR 20.0%
!! GAATAAGAAAAATACTCAAA+AGG - Chr5:87521790-87521809 MsG0580028846.01.T01:intron 20.0%
!! GTAAAAAATCCAAATATTAC+AGG - Chr5:87522070-87522089 MsG0580028846.01.T01:intron 20.0%
!! TAACATTCAAATTGAAAATG+AGG - Chr5:87521942-87521961 MsG0580028846.01.T01:intron 20.0%
!! TATCTAAGAATTAACCATAT+TGG - Chr5:87521763-87521782 MsG0580028846.01.T01:intron 20.0%
!! TTTCAAAGAACTAATTTGAT+TGG - Chr5:87520539-87520558 MsG0580028846.01.T01:intron 20.0%
!! TTTCTTATTCATTACCAATA+TGG + Chr5:87521780-87521799 MsG0580028847.01.T02:three_prime_UTR 20.0%
!!! TAACCTTTGAAATAATTTGA+AGG - Chr5:87520506-87520525 MsG0580028846.01.T01:intron 20.0%
!!! TACAAATTGGTTATTTTTTG+TGG + Chr5:87520027-87520046 MsG0580028847.01.T02:three_prime_UTR 20.0%
!!! TATTTAATTGTTTTGAGCTA+AGG - Chr5:87520375-87520394 MsG0580028846.01.T01:intron 20.0%
!!! TTAAACAAATTTTATCTAGG+GGG + Chr5:87520702-87520721 MsG0580028847.01.T02:three_prime_UTR 20.0%
!!! TTTTTTTGCTCTACTTAAAT+TGG - Chr5:87520332-87520351 MsG0580028846.01.T01:intron 20.0%
! AAATTGGATCCATAAACATA+AGG - Chr5:87520348-87520367 MsG0580028846.01.T01:intron 25.0%
! ACAAGATCTTCAATTGAAAT+GGG - Chr5:87520103-87520122 MsG0580028846.01.T01:CDS 25.0%
! ACATCAAAATTTAAAGGTCT+GGG + Chr5:87522116-87522135 None:intergenic 25.0%
! AGAAAACAAAATAACTAGCT+AGG - Chr5:87520939-87520958 MsG0580028846.01.T01:intron 25.0%
! AGGGTTCTATAAATATTCTA+GGG - Chr5:87521962-87521981 MsG0580028846.01.T01:intron 25.0%
! ATATTGAATGATTGCATGAA+GGG + Chr5:87521649-87521668 MsG0580028847.01.T02:three_prime_UTR 25.0%
! ATTTGTGTTTGATATCCTAT+AGG - Chr5:87522202-87522221 MsG0580028846.01.T01:intron 25.0%
! CACAATAATAATATGGACAA+GGG - Chr5:87520061-87520080 MsG0580028846.01.T01:exon 25.0%
! GTACATGAATAATTATATCC+TGG - Chr5:87522634-87522653 MsG0580028846.01.T01:five_prime_UTR 25.0%
! TACAAGATCTTCAATTGAAA+TGG - Chr5:87520102-87520121 MsG0580028846.01.T01:CDS 25.0%
! TACATCAAAATTTAAAGGTC+TGG + Chr5:87522117-87522136 None:intergenic 25.0%
! TATAGGATATCAAACACAAA+TGG + Chr5:87522203-87522222 None:intergenic 25.0%
! TCTCCTTCAAATTATTTCAA+AGG + Chr5:87520512-87520531 MsG0580028847.01.T02:three_prime_UTR 25.0%
! TGCATCATTATATCATTATG+GGG + Chr5:87519889-87519908 MsG0580028847.01.T02:three_prime_UTR 25.0%
! TTCTTAGATACCTTAAAGTT+TGG + Chr5:87521753-87521772 MsG0580028847.01.T02:three_prime_UTR 25.0%
!! ATAAAGGTACAAATTGAGTT+TGG + Chr5:87519998-87520017 MsG0580028847.01.T02:three_prime_UTR 25.0%
!! GTTTGTATTTTGCATATTGT+AGG - Chr5:87521044-87521063 MsG0580028846.01.T01:intron 25.0%
!! TTTTGCATATTGTAGGTATT+TGG - Chr5:87521051-87521070 MsG0580028846.01.T01:intron 25.0%
!!! AATTTCCATCTTACTTTTTC+TGG - Chr5:87521475-87521494 MsG0580028846.01.T01:CDS 25.0%
!!! ATATTGCTTTGAAAGTAACA+AGG + Chr5:87519938-87519957 MsG0580028847.01.T02:three_prime_UTR 25.0%
!!! GTATTTTAATCGGTTTGTAT+AGG - Chr5:87521425-87521444 MsG0580028846.01.T01:CDS 25.0%
ACAACATTACCCATAATGTT+TGG - Chr5:87521612-87521631 MsG0580028846.01.T01:intron 30.0%
ACTGGAATATATTTCATGTC+TGG + Chr5:87520998-87521017 MsG0580028847.01.T02:three_prime_UTR 30.0%
AGTTATCACATTTATTGCTG+TGG - Chr5:87522364-87522383 MsG0580028846.01.T01:CDS 30.0%
ATCATGAACCAATCTTATTC+TGG - Chr5:87521020-87521039 MsG0580028846.01.T01:intron 30.0%
ATTCATGTACACATCACAAA+GGG + Chr5:87522624-87522643 None:intergenic 30.0%
ATTGAGTTTGGTTGGATAAT+TGG + Chr5:87519986-87520005 MsG0580028847.01.T02:three_prime_UTR 30.0%
CAATACCATCACACATTAAA+TGG + Chr5:87521546-87521565 MsG0580028847.01.T02:three_prime_UTR 30.0%
CATGAATAATTATATCCTGG+TGG - Chr5:87522637-87522656 MsG0580028846.01.T01:five_prime_UTR 30.0%
GAGCAAGTAAAACAATAGTT+AGG - Chr5:87520914-87520933 MsG0580028846.01.T01:intron 30.0%
GAGGGTTCTATAAATATTCT+AGG - Chr5:87521961-87521980 MsG0580028846.01.T01:intron 30.0%
GATATTGAATGATTGCATGA+AGG + Chr5:87521650-87521669 MsG0580028847.01.T02:three_prime_UTR 30.0%
GCACAATAATAATATGGACA+AGG - Chr5:87520060-87520079 MsG0580028846.01.T01:exon 30.0%
GCTGTTACACATAAACAAAT+AGG + Chr5:87520208-87520227 MsG0580028847.01.T02:three_prime_UTR 30.0%
GGGTTCTATAAATATTCTAG+GGG - Chr5:87521963-87521982 MsG0580028846.01.T01:intron 30.0%
TACAAACACCAGAATAAGAT+TGG + Chr5:87521031-87521050 MsG0580028847.01.T02:three_prime_UTR 30.0%
TACTTCCATTTAATGTGTGA+TGG - Chr5:87521538-87521557 MsG0580028846.01.T01:intron 30.0%
TAGATACCTTAAAGTTTGGT+TGG + Chr5:87521749-87521768 MsG0580028847.01.T02:three_prime_UTR 30.0%
TATTCATGTACACATCACAA+AGG + Chr5:87522625-87522644 None:intergenic 30.0%
TCATTCCAGAAAAAGTAAGA+TGG + Chr5:87521483-87521502 MsG0580028847.01.T02:three_prime_UTR 30.0%
TGAAATCCAACCAAACTTTA+AGG - Chr5:87521740-87521759 MsG0580028846.01.T01:intron 30.0%
TTCTAGCATTCATACTGAAT+GGG - Chr5:87522037-87522056 MsG0580028846.01.T01:intron 30.0%
TTGACAAATGAAAACTCACT+TGG - Chr5:87520446-87520465 MsG0580028846.01.T01:intron 30.0%
TTTCACTCATATCCTCTTAT+AGG - Chr5:87522402-87522421 MsG0580028846.01.T01:CDS 30.0%
TTTGCTAAATAGCCTATAAG+AGG + Chr5:87522417-87522436 None:intergenic 30.0%
! AAGATTGGTTCATGATTAAC+TGG + Chr5:87521016-87521035 MsG0580028847.01.T02:three_prime_UTR 30.0%
! AATTCTGAGGAAAATGAGTA+TGG - Chr5:87520247-87520266 MsG0580028846.01.T01:CDS 30.0%
! AGTTGCCTTGTTATAACTAT+CGG - Chr5:87522681-87522700 MsG0580028846.01.T01:five_prime_UTR 30.0%
! TTTCAAGTAAGATATTGACC+TGG + Chr5:87521183-87521202 MsG0580028847.01.T02:three_prime_UTR 30.0%
!! AATGGAAGTACTTGTCAATA+TGG + Chr5:87521528-87521547 MsG0580028847.01.T02:three_prime_UTR 30.0%
!!! ATTGTTTTGAGCTAAGGTTT+TGG - Chr5:87520381-87520400 MsG0580028846.01.T01:intron 30.0%
AAAGGAAATGACCAACGATT+AGG + Chr5:87522533-87522552 None:intergenic 35.0%
AAGGAAATGACCAACGATTA+GGG + Chr5:87522532-87522551 None:intergenic 35.0%
ACATGCTCAACCAAACATTA+TGG + Chr5:87521625-87521644 MsG0580028847.01.T02:three_prime_UTR 35.0%
AGGTACAAATTGAGTTTGGT+TGG + Chr5:87519994-87520013 MsG0580028847.01.T02:three_prime_UTR 35.0%
ATATCCTGCACAAATACCAT+TGG + Chr5:87521083-87521102 MsG0580028847.01.T02:three_prime_UTR 35.0%
ATTCATACTGAATGGGTAGA+AGG - Chr5:87522044-87522063 MsG0580028846.01.T01:intron 35.0%
CATGCTCAACCAAACATTAT+GGG + Chr5:87521624-87521643 MsG0580028847.01.T02:three_prime_UTR 35.0%
CATTATGCTGAAGAATTCTG+AGG - Chr5:87520234-87520253 MsG0580028846.01.T01:CDS 35.0%
CTTGCTCTATGTTTCTTTGA+TGG + Chr5:87520901-87520920 MsG0580028847.01.T02:three_prime_UTR 35.0%
GAGGGAGTCATAATATTGTA+AGG + Chr5:87522506-87522525 None:intergenic 35.0%
GGAATATATTTCATGTCTGG+TGG + Chr5:87520995-87521014 MsG0580028847.01.T02:three_prime_UTR 35.0%
GTTCTAGCATTCATACTGAA+TGG - Chr5:87522036-87522055 MsG0580028846.01.T01:intron 35.0%
GTTCTATACCTTGCTGAATA+TGG - Chr5:87522269-87522288 MsG0580028846.01.T01:CDS 35.0%
TTATGTAGGTTTGCACCTAT+AGG + Chr5:87522220-87522239 None:intergenic 35.0%
TTCATACTGAATGGGTAGAA+GGG - Chr5:87522045-87522064 MsG0580028846.01.T01:intron 35.0%
! CTCTATGTTTCTTTGATGGT+TGG + Chr5:87520897-87520916 MsG0580028847.01.T02:three_prime_UTR 35.0%
! GTTGCCTTGTTATAACTATC+GGG - Chr5:87522682-87522701 MsG0580028846.01.T01:five_prime_UTR 35.0%
! GTTGGATTTCAGTAACTTGT+TGG + Chr5:87521731-87521750 MsG0580028847.01.T02:three_prime_UTR 35.0%
! TTAAGTCACGTTTGCTACAT+TGG + Chr5:87521362-87521381 MsG0580028847.01.T02:three_prime_UTR 35.0%
!! GTAGTTGATGAGGAATTTGA+AGG - Chr5:87520133-87520152 MsG0580028846.01.T01:CDS 35.0%
!!! CTTACTTTTTCTGGAATGAG+AGG - Chr5:87521484-87521503 MsG0580028846.01.T01:intron 35.0%
!!! GAGAGTGAACGTTTTTTGTT+GGG + Chr5:87521217-87521236 MsG0580028847.01.T02:three_prime_UTR 35.0%
!!! TAGGAGTGAGTGTTTTTAGT+TGG - Chr5:87521444-87521463 MsG0580028846.01.T01:CDS 35.0%
!!! TGAGAGTGAACGTTTTTTGT+TGG + Chr5:87521218-87521237 MsG0580028847.01.T02:three_prime_UTR 35.0%
AAAAAGAAAGCCCAAGCCTT+AGG + Chr5:87521154-87521173 MsG0580028847.01.T02:three_prime_UTR 40.0%
AAACGTGACTTAAGTCACGT+TGG - Chr5:87521369-87521388 MsG0580028846.01.T01:CDS 40.0%
AAGTAACAAGGCCAACTACT+AGG + Chr5:87519926-87519945 MsG0580028847.01.T02:three_prime_UTR 40.0%
AATGCTAACTCCCTAGTAGT+TGG - Chr5:87519912-87519931 MsG0580028846.01.T01:three_prime_UTR 40.0%
ACCAGCTACCCTGTAATATT+TGG + Chr5:87522082-87522101 MsG0580028847.01.T02:three_prime_UTR 40.0%
ACTTGGTCATTTGATAGAGG+AGG - Chr5:87520463-87520482 MsG0580028846.01.T01:intron 40.0%
AGCTTCATTGCTACGTATTG+TGG - Chr5:87520162-87520181 MsG0580028846.01.T01:CDS 40.0%
AGTAACAAGGCCAACTACTA+GGG + Chr5:87519925-87519944 MsG0580028847.01.T02:three_prime_UTR 40.0%
AGTTCAGCTTGTGGATCTTT+CGG - Chr5:87522311-87522330 MsG0580028846.01.T01:CDS 40.0%
CACACAAGTTAACTCACGTT+CGG - Chr5:87521261-87521280 MsG0580028846.01.T01:intron 40.0%
CTCACTTGGTCATTTGATAG+AGG - Chr5:87520460-87520479 MsG0580028846.01.T01:intron 40.0%
CTTGGTCATTTGATAGAGGA+GGG - Chr5:87520464-87520483 MsG0580028846.01.T01:intron 40.0%
TACACGAGTTAATTCACGCT+AGG - Chr5:87521301-87521320 MsG0580028846.01.T01:CDS 40.0%
TAGCGTGAATTAACTCGTGT+AGG + Chr5:87521302-87521321 MsG0580028847.01.T02:three_prime_UTR 40.0%
TCCAAATATTACAGGGTAGC+TGG - Chr5:87522078-87522097 MsG0580028846.01.T01:intron 40.0%
TCTGTTGCCTATTCTGATCT+TGG - Chr5:87520271-87520290 MsG0580028846.01.T01:CDS 40.0%
TTCAACTATGCCTAAGGCTT+GGG - Chr5:87521141-87521160 MsG0580028846.01.T01:intron 40.0%
! AACTTGTGTGCGGAATGTTT+TGG + Chr5:87521251-87521270 MsG0580028847.01.T02:three_prime_UTR 40.0%
! CATGTACTTTGTTATCCACC+AGG + Chr5:87522655-87522674 None:intergenic 40.0%
! GGGAAATTCAGTAGTTGATG+AGG - Chr5:87520123-87520142 MsG0580028846.01.T01:CDS 40.0%
!! AACGTGAGTTAACTTGTGTG+CGG + Chr5:87521261-87521280 MsG0580028847.01.T02:three_prime_UTR 40.0%
!! ACTAGCATTGCTGCTTTCAA+TGG - Chr5:87522476-87522495 MsG0580028846.01.T01:CDS 40.0%
!! ATTCTGATCTTGGTGCTTTC+AGG - Chr5:87520281-87520300 MsG0580028846.01.T01:CDS 40.0%
!! GAAAGCACCAAGATCAGAAT+AGG + Chr5:87520281-87520300 MsG0580028847.01.T02:three_prime_UTR 40.0%
!! GGTACTGATGTCAAGCTTTA+AGG + Chr5:87520681-87520700 MsG0580028847.01.T02:three_prime_UTR 40.0%
!!! TCACGTGGGGGTATTTTAAT+CGG - Chr5:87521415-87521434 MsG0580028846.01.T01:CDS 40.0%
ACAAGTCAACAACTCCCACA+AGG - Chr5:87522451-87522470 MsG0580028846.01.T01:CDS 45.0%
ACCTACATAATCCTAGCTGC+TGG - Chr5:87522230-87522249 MsG0580028846.01.T01:intron 45.0%
AGCAATGCTAGTGTCCTTGT+GGG + Chr5:87522468-87522487 None:intergenic 45.0%
CAAGCCTTAGGCATAGTTGA+AGG + Chr5:87521142-87521161 MsG0580028847.01.T02:three_prime_UTR 45.0%
CATGCCAATGGTATTTGTGC+AGG - Chr5:87521076-87521095 MsG0580028846.01.T01:intron 45.0%
CCTTAGGCATAGTTGAAGGA+CGG + Chr5:87521138-87521157 MsG0580028847.01.T02:three_prime_UTR 45.0%
CTTAGGCATAGTTGAAGGAC+GGG + Chr5:87521137-87521156 MsG0580028847.01.T02:three_prime_UTR 45.0%
CTTCAACTATGCCTAAGGCT+TGG - Chr5:87521140-87521159 MsG0580028846.01.T01:intron 45.0%
TAGGGACTCCATATTCAGCA+AGG + Chr5:87522280-87522299 None:intergenic 45.0%
TCCAGCAGCTAGGATTATGT+AGG + Chr5:87522234-87522253 None:intergenic 45.0%
TGCTGGAGCTGTATTAACAG+AGG - Chr5:87522247-87522266 MsG0580028846.01.T01:intron 45.0%
TTAATACAGCTCCAGCAGCT+AGG + Chr5:87522244-87522263 None:intergenic 45.0%
TTAGGCATAGTTGAAGGACG+GGG + Chr5:87521136-87521155 MsG0580028847.01.T02:three_prime_UTR 45.0%
! GGCTTTCTTTTTGCTTGACC+AGG - Chr5:87521162-87521181 MsG0580028846.01.T01:intron 45.0%
! TCAAGTGAGTTGACTCACGT+AGG + Chr5:87521333-87521352 MsG0580028847.01.T02:three_prime_UTR 45.0%
!! AGGTATTTGGTGCATGCCAA+TGG - Chr5:87521064-87521083 MsG0580028846.01.T01:intron 45.0%
!! AAAAGTAAATAAAAATTATA+GGG - Chr5:87521914-87521933 MsG0580028846.01.T01:intron 5.0%
CAGCAATGCTAGTGTCCTTG+TGG + Chr5:87522469-87522488 None:intergenic 50.0%
CCGTCCTTCAACTATGCCTA+AGG - Chr5:87521135-87521154 MsG0580028846.01.T01:intron 50.0%
CTGAACTCCATCCTGCAGTA+GGG + Chr5:87522298-87522317 None:intergenic 50.0%
CTGCGTGACTTAAGTCACGT+GGG - Chr5:87521401-87521420 MsG0580028846.01.T01:CDS 50.0%
GAATATGGAGTCCCTACTGC+AGG - Chr5:87522284-87522303 MsG0580028846.01.T01:CDS 50.0%
GACCAACGATTAGGGACAGA+GGG + Chr5:87522524-87522543 None:intergenic 50.0%
TGACCAACGATTAGGGACAG+AGG + Chr5:87522525-87522544 None:intergenic 50.0%
TGCGTGACTTAAGTCACGTG+GGG - Chr5:87521402-87521421 MsG0580028846.01.T01:CDS 50.0%
! GACACAAGAAGTGCAAGACG+AGG - Chr5:87520839-87520858 MsG0580028846.01.T01:intron 50.0%
!! TGGGAGTTGTTGACTTGTGC+TGG + Chr5:87522449-87522468 None:intergenic 50.0%
ATGGAGTCCCTACTGCAGGA+TGG - Chr5:87522288-87522307 MsG0580028846.01.T01:CDS 55.0%
CCACGTGACTTAAGTCACGC+AGG + Chr5:87521403-87521422 MsG0580028847.01.T02:three_prime_UTR 55.0%
CCTGCGTGACTTAAGTCACG+TGG - Chr5:87521400-87521419 MsG0580028846.01.T01:CDS 55.0%
CTCCCTCTGTCCCTAATCGT+TGG - Chr5:87522519-87522538 MsG0580028846.01.T01:five_prime_UTR 55.0%
GCAGGATGGAGTTCAGCTTG+TGG - Chr5:87522302-87522321 MsG0580028846.01.T01:CDS 55.0%
GCGTGACTTAAGTCACGTGG+GGG - Chr5:87521403-87521422 MsG0580028846.01.T01:CDS 55.0%
GCTGAACTCCATCCTGCAGT+AGG + Chr5:87522299-87522318 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 87519864 87522701 87519864 ID=MsG0580028846.01;Name=MsG0580028846.01
Chr5 mRNA 87519864 87522701 87519864 ID=MsG0580028846.01.T01;Parent=MsG0580028846.01;Name=MsG0580028846.01.T01;_AED=0.32;_eAED=0.37;_QI=194|0.5|0.66|1|1|1|3|199|246
Chr5 exon 87519864 87520341 87519864 ID=MsG0580028846.01.T01:exon:23233;Parent=MsG0580028846.01.T01
Chr5 exon 87521283 87521499 87521283 ID=MsG0580028846.01.T01:exon:23232;Parent=MsG0580028846.01.T01
Chr5 exon 87522263 87522701 87522263 ID=MsG0580028846.01.T01:exon:23231;Parent=MsG0580028846.01.T01
Chr5 five_prime_UTR 87522508 87522701 87522508 ID=MsG0580028846.01.T01:five_prime_utr;Parent=MsG0580028846.01.T01
Chr5 CDS 87522263 87522507 87522263 ID=MsG0580028846.01.T01:cds;Parent=MsG0580028846.01.T01
Chr5 CDS 87521283 87521499 87521283 ID=MsG0580028846.01.T01:cds;Parent=MsG0580028846.01.T01
Chr5 CDS 87520063 87520341 87520063 ID=MsG0580028846.01.T01:cds;Parent=MsG0580028846.01.T01
Chr5 three_prime_UTR 87519864 87520062 87519864 ID=MsG0580028846.01.T01:three_prime_utr;Parent=MsG0580028846.01.T01
Gene Sequence

>MsG0580028846.01.T01

ATGCACAATAATAATATGGACAAGGGAAACAGTGTTGAATTAGCTACAAGATCTTCAATTGAAATGGGAAATTCAGTAGTTGATGAGGAATTTGAAGGCAAAGAAGCTTCATTGCTACGTATTGTGGAGACTTTCTTGCGTTTGTTTCCTATTTGTTTATGTGTAACAGCTCTTATCATTATGCTGAAGAATTCTGAGGAAAATGAGTATGGTTCTGTTGCCTATTCTGATCTTGGTGCTTTCAGGTATTTGGTGCATGCCAATGGTATTTGTGCAGGATATTCACTATTCTCAGCAGTCATTGTTGCTGTGCCCCGTCCTTCAACTATGCCTAAGGCTTGGGCTTTCTTTTTGCTTGACCAGGTCAATATCTTACTTGAAAATTGCTATTCTCCCAACAAAAAACGTTCACTCTCATACAAACTAACCAAAACATTCCGCACACAAGTTAACTCACGTTCGGTGCAAACCTACATAATCCTAGCTGCTGGAGCTGTATTAACAGAGGTTCTATACCTTGCTGAATATGGAGTCCCTACTGCAGGATGGAGTTCAGCTTGTGGATCTTTCGGTTCATTTTGTCACAAGATCAAAGCTTCATTAGTTATCACATTTATTGCTGTGGTTTGCTATATATTGCTTTCACTCATATCCTCTTATAGGCTATTTAGCAAATATGATGCACCAGCACAAGTCAACAACTCCCACAAGGACACTAGCATTGCTGCTTTCAATGGCTGA

Protein sequence

>MsG0580028846.01.T01

MHNNNMDKGNSVELATRSSIEMGNSVVDEEFEGKEASLLRIVETFLRLFPICLCVTALIIMLKNSEENEYGSVAYSDLGAFRYLVHANGICAGYSLFSAVIVAVPRPSTMPKAWAFFLLDQVNILLENCYSPNKKRSLSYKLTKTFRTQVNSRSVQTYIILAAGAVLTEVLYLAEYGVPTAGWSSACGSFGSFCHKIKASLVITFIAVVCYILLSLISSYRLFSKYDAPAQVNNSHKDTSIAAFNG*