AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016530.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016530.01.T01 MTR_3g091560 97.045 440 10 1 1 437 1 440 0.0 886
MsG0380016530.01.T01 MTR_1g007920 56.236 457 152 13 21 433 6 458 2.41e-110 333
MsG0380016530.01.T01 MTR_1g007920 56.621 438 143 12 40 433 49 483 9.58e-106 322
MsG0380016530.01.T01 MTR_8g024540 31.961 413 205 15 1 360 1 390 1.06e-35 139
MsG0380016530.01.T01 MTR_7g114700 28.755 466 222 19 1 401 1 421 5.04e-29 118
MsG0380016530.01.T01 MTR_6g033415 39.068 279 149 7 1 269 1 268 8.17e-29 117
MsG0380016530.01.T01 MTR_1g095740 38.462 169 93 3 112 272 141 306 3.85e-27 113
MsG0380016530.01.T01 MTR_1g066800 26.818 440 237 18 1 369 1 426 1.32e-26 112
MsG0380016530.01.T01 MTR_1g066800 26.292 445 238 18 1 369 1 431 2.27e-26 111
MsG0380016530.01.T01 MTR_0047s0040 25.773 388 234 12 1 365 1 357 2.39e-26 110
MsG0380016530.01.T01 MTR_4g050480 38.947 190 79 5 107 278 88 258 5.55e-25 107
MsG0380016530.01.T01 MTR_4g050480 38.947 190 79 5 107 278 89 259 5.93e-25 106
MsG0380016530.01.T01 MTR_7g100790 35.439 285 150 10 1 269 1 267 1.42e-24 105
MsG0380016530.01.T01 MTR_4g087420 26.350 463 238 15 1 369 1 454 4.23e-23 102
MsG0380016530.01.T01 MTR_1g101330 30.435 322 143 13 112 382 115 406 8.39e-22 97.4
MsG0380016530.01.T01 MTR_1g103070 58.015 131 49 3 56 180 74 204 3.04e-21 95.9
MsG0380016530.01.T01 MTR_8g102400 56.180 89 34 1 89 172 84 172 5.22e-21 95.1
MsG0380016530.01.T01 MTR_0019s0070 35.385 195 93 6 114 308 119 280 5.55e-21 95.1
MsG0380016530.01.T01 MTR_8g074730 60.526 76 29 1 109 184 68 142 9.73e-21 88.6
MsG0380016530.01.T01 MTR_1g023760 34.884 172 65 6 112 270 124 261 9.02e-20 92.4
MsG0380016530.01.T01 MTR_1g051810 29.156 391 224 12 4 373 3 361 1.84e-19 89.7
MsG0380016530.01.T01 MTR_3g104570 43.787 169 82 6 112 269 91 257 1.92e-19 90.5
MsG0380016530.01.T01 MTR_8g014580 43.137 204 98 5 1 188 1 202 1.03e-18 88.2
MsG0380016530.01.T01 MTR_7g114870 58.571 70 29 0 111 180 105 174 2.77e-18 86.7
MsG0380016530.01.T01 MTR_4g108140 51.899 79 35 1 110 185 98 176 6.07e-18 86.7
MsG0380016530.01.T01 MTR_4g108140 51.899 79 35 1 110 185 97 175 6.23e-18 86.7
MsG0380016530.01.T01 MTR_2g100740 52.174 92 37 1 97 181 75 166 2.75e-17 83.2
MsG0380016530.01.T01 MTR_1g041430 56.579 76 32 1 90 164 88 163 5.20e-17 83.2
MsG0380016530.01.T01 MTR_2g015370 31.461 178 105 6 114 283 65 233 2.73e-15 76.6
MsG0380016530.01.T01 MTR_4g102840 58.209 67 27 1 114 179 90 156 2.84e-14 74.7
MsG0380016530.01.T01 MTR_3g020990 34.862 109 66 2 125 231 103 208 1.78e-13 70.5
MsG0380016530.01.T01 MTR_2g099780 36.429 140 76 6 141 269 107 244 7.37e-13 70.5
MsG0380016530.01.T01 MTR_8g017570 36.598 194 116 4 110 297 88 280 3.38e-12 68.6
MsG0380016530.01.T01 MTR_2g078210 26.590 173 110 5 114 277 76 240 7.89e-12 66.6
MsG0380016530.01.T01 MTR_2g078210 26.590 173 110 5 114 277 16 180 1.33e-11 65.1
MsG0380016530.01.T01 MTR_5g038620 32.000 175 71 7 110 271 117 256 3.84e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016530.01.T01 AT3G49260 47.651 447 190 16 1 405 1 445 3.71e-89 279
MsG0380016530.01.T01 AT3G49260 47.651 447 190 16 1 405 1 445 3.71e-89 279
MsG0380016530.01.T01 AT3G49260 47.651 447 190 16 1 405 1 445 3.71e-89 279
MsG0380016530.01.T01 AT3G49260 47.768 448 189 16 1 405 1 446 9.60e-89 278
MsG0380016530.01.T01 AT5G03040 30.120 415 227 12 1 360 1 407 3.18e-38 144
MsG0380016530.01.T01 AT5G03040 30.120 415 227 12 1 360 1 407 3.18e-38 144
MsG0380016530.01.T01 AT5G03040 30.120 415 227 12 1 360 1 407 3.18e-38 144
MsG0380016530.01.T01 AT3G52290 32.874 435 186 15 5 367 2 402 4.31e-37 140
MsG0380016530.01.T01 AT1G01110 31.658 398 219 14 1 364 1 379 3.50e-31 125
MsG0380016530.01.T01 AT4G00820 31.928 332 181 11 63 370 85 395 1.26e-29 121
MsG0380016530.01.T01 AT3G09710 30.976 297 142 10 4 269 3 267 1.34e-28 117
MsG0380016530.01.T01 AT2G26180 41.748 206 108 5 112 306 84 288 3.28e-27 113
MsG0380016530.01.T01 AT3G09710 29.582 311 142 11 4 269 3 281 8.08e-27 112
MsG0380016530.01.T01 AT4G10640 28.358 402 214 15 1 364 1 366 1.57e-26 111
MsG0380016530.01.T01 AT3G59690 30.526 285 142 9 115 364 172 435 1.11e-24 106
MsG0380016530.01.T01 AT3G59690 30.526 285 142 9 115 364 172 435 1.11e-24 106
MsG0380016530.01.T01 AT5G13460 31.641 256 139 11 114 357 113 344 2.68e-23 102
MsG0380016530.01.T01 AT1G72670 29.255 376 219 12 1 354 1 351 2.89e-23 101
MsG0380016530.01.T01 AT3G22190 41.799 189 78 4 105 278 81 252 1.16e-22 100
MsG0380016530.01.T01 AT3G22190 41.799 189 78 4 105 278 81 252 1.16e-22 100
MsG0380016530.01.T01 AT3G22190 41.799 189 78 4 105 278 81 252 1.16e-22 100
MsG0380016530.01.T01 AT3G22190 41.799 189 78 4 105 278 81 252 1.16e-22 100
MsG0380016530.01.T01 AT3G49380 39.896 193 84 6 1 178 1 176 2.39e-22 98.2
MsG0380016530.01.T01 AT4G23060 62.821 78 28 1 101 178 157 233 3.68e-21 96.3
MsG0380016530.01.T01 AT4G14750 66.667 66 22 0 112 177 105 170 6.53e-21 94.4
MsG0380016530.01.T01 AT4G14750 66.667 66 22 0 112 177 164 229 1.14e-20 94.4
MsG0380016530.01.T01 AT4G14750 66.667 66 22 0 112 177 164 229 1.15e-20 94.4
MsG0380016530.01.T01 AT1G17480 30.038 263 160 7 110 361 92 341 1.74e-20 92.8
MsG0380016530.01.T01 AT2G43680 28.315 279 160 9 114 365 325 590 4.32e-20 93.6
MsG0380016530.01.T01 AT2G43680 28.315 279 160 9 114 365 324 589 4.35e-20 93.6
MsG0380016530.01.T01 AT2G43680 28.315 279 160 9 114 365 324 589 4.35e-20 93.6
MsG0380016530.01.T01 AT2G43680 28.315 279 160 9 114 365 324 589 4.35e-20 93.6
MsG0380016530.01.T01 AT2G43680 28.315 279 160 9 114 365 324 589 4.35e-20 93.6
MsG0380016530.01.T01 AT3G16490 50.000 96 43 1 101 196 96 186 8.93e-19 88.2
MsG0380016530.01.T01 AT5G07240 57.647 85 23 1 101 172 82 166 2.37e-18 87.0
MsG0380016530.01.T01 AT5G07240 57.647 85 23 1 101 172 128 212 2.51e-18 87.4
MsG0380016530.01.T01 AT2G26410 32.222 180 94 5 109 272 145 312 3.30e-18 87.4
MsG0380016530.01.T01 AT2G26410 32.222 180 94 5 109 272 145 312 3.30e-18 87.4
MsG0380016530.01.T01 AT1G19870 34.545 165 62 5 112 269 215 340 4.35e-18 87.4
MsG0380016530.01.T01 AT1G19870 34.545 165 62 5 112 269 32 157 4.52e-18 87.0
MsG0380016530.01.T01 AT1G18840 55.385 65 29 0 112 176 109 173 8.15e-18 86.3
MsG0380016530.01.T01 AT1G18840 55.385 65 29 0 112 176 109 173 8.15e-18 86.3
MsG0380016530.01.T01 AT1G18840 55.385 65 29 0 112 176 109 173 8.15e-18 86.3
MsG0380016530.01.T01 AT3G51380 56.338 71 30 1 109 179 34 103 9.89e-18 79.0
MsG0380016530.01.T01 AT4G29150 56.522 69 30 0 106 174 125 193 7.15e-16 79.3
MsG0380016530.01.T01 AT1G51960 43.478 92 51 1 114 204 102 193 1.81e-15 77.8
MsG0380016530.01.T01 AT5G62070 71.698 53 15 0 114 166 119 171 7.72e-15 76.3
MsG0380016530.01.T01 AT1G74690 53.846 65 30 0 112 176 113 177 1.47e-14 76.3
MsG0380016530.01.T01 AT1G14380 50.000 64 32 0 111 174 93 156 2.22e-14 75.9
MsG0380016530.01.T01 AT1G14380 50.000 64 32 0 111 174 93 156 2.22e-14 75.9
MsG0380016530.01.T01 AT1G14380 50.000 64 32 0 111 174 93 156 2.22e-14 75.9
MsG0380016530.01.T01 AT2G33990 29.648 199 127 8 114 306 49 240 2.72e-14 73.2
MsG0380016530.01.T01 AT1G14380 50.000 64 32 0 111 174 93 156 2.82e-14 75.5
MsG0380016530.01.T01 AT1G14380 50.000 64 32 0 111 174 93 156 2.82e-14 75.5
MsG0380016530.01.T01 AT1G14380 50.000 64 32 0 111 174 93 156 2.82e-14 75.5
MsG0380016530.01.T01 AT1G14380 50.000 64 32 0 111 174 93 156 3.04e-14 75.1
MsG0380016530.01.T01 AT5G03960 34.568 243 134 7 4 231 3 235 5.96e-12 67.4
MsG0380016530.01.T01 AT5G03960 34.568 243 134 7 4 231 3 235 5.96e-12 67.4
MsG0380016530.01.T01 AT3G15050 28.090 178 107 4 111 277 49 216 7.20e-12 65.9
MsG0380016530.01.T01 AT5G03960 39.037 187 99 4 60 231 48 234 1.55e-11 66.2

Find 136 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACAATGTTAGGCCTTT+AGG 0.179218 3:+84753656 MsG0380016530.01.T01:CDS
GGGCTTGGGCTTCTAGTAAT+TGG 0.200692 3:-84754028 None:intergenic
CCTTCAATCTAAACGGATTT+CGG 0.207622 3:+84754069 MsG0380016530.01.T01:CDS
CAAACAATGTTAGGCCTTTA+GGG 0.216561 3:+84753657 MsG0380016530.01.T01:CDS
GGGCGTCGTTTGGATCTTAC+TGG 0.267147 3:+84753930 MsG0380016530.01.T01:CDS
CTTCAATCTAAACGGATTTC+GGG 0.269149 3:+84754070 MsG0380016530.01.T01:CDS
AAATTAAGGACACTGATTTC+AGG 0.276524 3:+84752925 MsG0380016530.01.T01:CDS
TGGCCTTTGCAGACTGTGTT+GGG 0.282948 3:-84753877 None:intergenic
GACTTAAATCATGAAATTCT+TGG 0.286842 3:-84753799 None:intergenic
CATCTTCCATAACAACAATT+AGG 0.288073 3:+84750124 MsG0380016530.01.T01:five_prime_UTR
CTTCCTTCATTCGTGATATC+TGG 0.297331 3:-84752060 None:intergenic
CTTTCACTATCATCAACATT+TGG 0.297842 3:-84753566 None:intergenic
TGAAATCCTAATTGTTGTTA+TGG 0.298589 3:-84750130 None:intergenic
TCAAAGTAGCCAGAAAATTA+AGG 0.332991 3:+84752911 MsG0380016530.01.T01:CDS
AGCAGCAGAGGAGGTATCTA+TGG 0.333458 3:+84752014 MsG0380016530.01.T01:CDS
ACGTGCACTGCGTGCTTTGA+AGG 0.337011 3:+84752683 MsG0380016530.01.T01:CDS
ATATCATCAGTGGGTGTATA+TGG 0.341287 3:-84753701 None:intergenic
CGTGTTTGTCGTGAGTCAAT+TGG 0.349060 3:-84752824 None:intergenic
AACGACGCCCGATGCTTTGA+TGG 0.352089 3:-84753917 None:intergenic
AGCAGCAGCTGAAGCTGCAG+TGG 0.352700 3:+84752146 MsG0380016530.01.T01:CDS
AATGTTAGGCCTTTAGGGTT+GGG 0.372284 3:+84753662 MsG0380016530.01.T01:CDS
ACATGGAGCTACAATGAATA+AGG 0.377871 3:+84752950 MsG0380016530.01.T01:CDS
TTTCACTATCATCAACATTT+GGG 0.379669 3:-84753565 None:intergenic
TGGGCCTTGACTCTTAATCT+TGG 0.382714 3:-84753897 None:intergenic
CCAACATTCATCTCAGAAAC+AGG 0.383345 3:+84750244 MsG0380016530.01.T01:five_prime_UTR
TCAAAGCATCGGGCGTCGTT+TGG 0.387573 3:+84753920 MsG0380016530.01.T01:CDS
CCAACCAGTTCCAATCCAAT+TGG 0.388280 3:-84753613 None:intergenic
AGAAGGAAAAGGAAGAGAAT+TGG 0.395607 3:+84751983 MsG0380016530.01.T01:intron
AGCTGCTAGAGTTGTGAGAT+TGG 0.400903 3:+84752182 MsG0380016530.01.T01:CDS
CCGAAATCCGTTTAGATTGA+AGG 0.401125 3:-84754069 None:intergenic
AGATGAATGTTGGTAGTTAC+TGG 0.406597 3:-84750234 None:intergenic
TATCACAATCAAACAATGTT+AGG 0.407700 3:+84753648 MsG0380016530.01.T01:CDS
ACACAAATGGTTGGAACTAT+AGG 0.408666 3:+84752886 MsG0380016530.01.T01:CDS
GCAAGCATTGGTAAGGGTTC+AGG 0.410589 3:+84752779 MsG0380016530.01.T01:CDS
TGGAGGTGTACCTAGCTATA+TGG 0.419424 3:+84753853 MsG0380016530.01.T01:CDS
TTGGCCTTTGCAGACTGTGT+TGG 0.420117 3:-84753878 None:intergenic
TATGATTCATCTGGCTCTGG+TGG 0.422243 3:+84753989 MsG0380016530.01.T01:CDS
GGCTATGATTCATCTGGCTC+TGG 0.428311 3:+84753986 MsG0380016530.01.T01:CDS
TGAGCGTGAAAGAGCCCAAT+TGG 0.428420 3:+84753598 MsG0380016530.01.T01:CDS
AGCTGAAGCTGCAGTGGCTG+CGG 0.436330 3:+84752152 MsG0380016530.01.T01:CDS
TGCTGCTGTTGCTGCAGCAT+AGG 0.442444 3:-84752127 None:intergenic
CGTTGGTGGTGTTTAGAGAT+AGG 0.443029 3:-84753821 None:intergenic
GAGCCCAATTGGATTGGAAC+TGG 0.444353 3:+84753609 MsG0380016530.01.T01:CDS
CGGGTGCTGGTGTTGAGGAT+TGG 0.453226 3:+84754089 MsG0380016530.01.T01:CDS
GGGATGGGCTATGATTCATC+TGG 0.454170 3:+84753980 MsG0380016530.01.T01:CDS
TCCATACGCTTTCAACTGCC+AGG 0.454990 3:+84752983 MsG0380016530.01.T01:CDS
CTTGTCCAGCCATGACCTCC+AGG 0.458475 3:-84754121 None:intergenic
AGGTCATGGACATAACTCTA+AGG 0.464310 3:+84752206 MsG0380016530.01.T01:CDS
CAATGTTAGGCCTTTAGGGT+TGG 0.466914 3:+84753661 MsG0380016530.01.T01:CDS
ATGATTCATCTGGCTCTGGT+GGG 0.467215 3:+84753990 MsG0380016530.01.T01:CDS
ATTCATGGGACAGTAATGTT+TGG 0.472342 3:-84750177 None:intergenic
CTCATTCAGTCCTACTATAG+AGG 0.474856 3:+84752246 MsG0380016530.01.T01:CDS
ATGATTTCTCTCTTCAGTCA+AGG 0.475457 3:-84752097 None:intergenic
TCTAAACGGATTTCGGGTGC+TGG 0.479590 3:+84754076 MsG0380016530.01.T01:CDS
ATGTTAGGCCTTTAGGGTTG+GGG 0.482998 3:+84753663 MsG0380016530.01.T01:CDS
ACGGAGTCCTCCGACTGGGA+TGG 0.488447 3:+84753964 MsG0380016530.01.T01:CDS
GCTAGAGTTGTGAGATTGGC+AGG 0.489676 3:+84752186 MsG0380016530.01.T01:CDS
TGATTTCTCTCTTCAGTCAA+GGG 0.491440 3:-84752096 None:intergenic
TTTGCATGGATTGAGTCTCT+TGG 0.491563 3:-84753761 None:intergenic
TCCTCTCAGATGGGTAAGAA+AGG 0.494472 3:+84750448 MsG0380016530.01.T01:exon
GGATTCGCCTTCAATCTAAA+CGG 0.496890 3:+84754062 MsG0380016530.01.T01:CDS
GGCCTTTGCAGACTGTGTTG+GGG 0.500229 3:-84753876 None:intergenic
AGTTACTGGTCCTTCATGTA+TGG 0.501378 3:-84750220 None:intergenic
ACCTGGCAGTTGAAAGCGTA+TGG 0.501521 3:-84752984 None:intergenic
TCAGCACGGAGTCCTCCGAC+TGG 0.503212 3:+84753959 MsG0380016530.01.T01:CDS
CAACCAGTTCCAATCCAATT+GGG 0.509130 3:-84753612 None:intergenic
CGGAGTCCTCCGACTGGGAT+GGG 0.510075 3:+84753965 MsG0380016530.01.T01:CDS
TCAAGGCCCATCAAAGCATC+GGG 0.510279 3:+84753910 MsG0380016530.01.T01:CDS
ATTGGAACTGGTTGGAGCGT+TGG 0.514467 3:+84753621 MsG0380016530.01.T01:CDS
CATCAGTGGGTGTATATGGT+GGG 0.517012 3:-84753697 None:intergenic
GTATATGGTGGGGTCTCAAG+TGG 0.518909 3:-84753686 None:intergenic
TCAAGTGGCCCCAACCCTAA+AGG 0.519519 3:-84753671 None:intergenic
GTTGTGAGATTGGCAGGTCA+TGG 0.520639 3:+84752192 MsG0380016530.01.T01:CDS
ACGACAAAGTTAGACACAAA+TGG 0.522106 3:+84752873 MsG0380016530.01.T01:CDS
ACATAGCCTTTCCTCTCAGA+TGG 0.522560 3:+84750438 MsG0380016530.01.T01:exon
GATGCATGCAAGCATTGGTA+AGG 0.524234 3:+84752772 MsG0380016530.01.T01:CDS
CAAACACGAGCGGACAGTAG+AGG 0.524630 3:+84752839 MsG0380016530.01.T01:CDS
GTCAAGGCCCATCAAAGCAT+CGG 0.524983 3:+84753909 MsG0380016530.01.T01:CDS
TCACCAGATATCACGAATGA+AGG 0.525050 3:+84752057 MsG0380016530.01.T01:CDS
TCATGAGGCCCATGTTTGCA+TGG 0.531097 3:-84753775 None:intergenic
CGTGCACTGCGTGCTTTGAA+GGG 0.531337 3:+84752684 MsG0380016530.01.T01:CDS
CATGAAATTCTTGGTTCATG+AGG 0.532356 3:-84753790 None:intergenic
GTGAAAGAGCCCAATTGGAT+TGG 0.532613 3:+84753603 MsG0380016530.01.T01:CDS
TACTAGGTATCCTCTATAGT+AGG 0.537083 3:-84752256 None:intergenic
TTCTTCAGACATATCATCAG+TGG 0.544019 3:-84753711 None:intergenic
ATCAGTGGGTGTATATGGTG+GGG 0.545609 3:-84753696 None:intergenic
CTCCACTGTGGTGTCGTTGG+TGG 0.546689 3:-84753835 None:intergenic
GATTTCGGGTGCTGGTGTTG+AGG 0.548721 3:+84754084 MsG0380016530.01.T01:CDS
CACCTCCACTGTGGTGTCGT+TGG 0.549460 3:-84753838 None:intergenic
TGATTCATCTGGCTCTGGTG+GGG 0.551322 3:+84753991 MsG0380016530.01.T01:CDS
ACGACGCCCGATGCTTTGAT+GGG 0.553948 3:-84753916 None:intergenic
TCTTCAGACATATCATCAGT+GGG 0.559544 3:-84753710 None:intergenic
CAAAGTTAGACACAAATGGT+TGG 0.564649 3:+84752877 MsG0380016530.01.T01:CDS
CTCAACTCTACAAGAGAACA+AGG 0.565237 3:+84750522 MsG0380016530.01.T01:CDS
GACTCAATCCATGCAAACAT+GGG 0.565689 3:+84753767 MsG0380016530.01.T01:CDS
ATATCTGGTGAACTATATGC+AGG 0.565870 3:-84752045 None:intergenic
AGACTCAATCCATGCAAACA+TGG 0.566185 3:+84753766 MsG0380016530.01.T01:CDS
TTTGTGTCTAACTTTGTCGT+AGG 0.567471 3:-84752870 None:intergenic
CCAATTGGATTGGAACTGGT+TGG 0.567620 3:+84753613 MsG0380016530.01.T01:CDS
TGAGATTGCAAGCACTTGTG+AGG 0.571803 3:+84752712 MsG0380016530.01.T01:CDS
GAGATTGCAAGCACTTGTGA+GGG 0.574688 3:+84752713 MsG0380016530.01.T01:CDS
TTCAGTCAAGGGTGTTGATG+TGG 0.575945 3:-84752085 None:intergenic
TGGGTAAGAAAGGAAGCAGT+TGG 0.576166 3:+84750458 MsG0380016530.01.T01:CDS
TGTGTTGGGGCCATATAGCT+AGG 0.577052 3:-84753863 None:intergenic
TCATCAGTGGGTGTATATGG+TGG 0.580532 3:-84753698 None:intergenic
GCAGCATGAAGCAGCAGAGG+AGG 0.582128 3:+84752005 MsG0380016530.01.T01:CDS
CCTGTTTCTGAGATGAATGT+TGG 0.586683 3:-84750244 None:intergenic
CAGCACGGAGTCCTCCGACT+GGG 0.587545 3:+84753960 MsG0380016530.01.T01:CDS
GACACTGATTTCAGGAAACA+TGG 0.590046 3:+84752933 MsG0380016530.01.T01:CDS
TCTTACCCATCTGAGAGGAA+AGG 0.590209 3:-84750444 None:intergenic
CATAGCCTTTCCTCTCAGAT+GGG 0.597012 3:+84750439 MsG0380016530.01.T01:exon
GGCCCCAACACAGTCTGCAA+AGG 0.604497 3:+84753874 MsG0380016530.01.T01:CDS
AATGCGATGCATGCAAGCAT+TGG 0.605182 3:+84752767 MsG0380016530.01.T01:CDS
TTGTCCAGCCATGACCTCCA+GGG 0.606858 3:-84754120 None:intergenic
TTGGCAGCATGAAGCAGCAG+AGG 0.610256 3:+84752002 MsG0380016530.01.T01:CDS
AGTAATTGGATGAGCAGCAG+TGG 0.612150 3:-84754014 None:intergenic
CCACCACACACCATACATGA+AGG 0.614977 3:+84750210 MsG0380016530.01.T01:five_prime_UTR
TATGGAAGATGAGGATGGTG+AGG 0.620544 3:-84750112 None:intergenic
CTTACTGGAGCTCGTCAGCA+CGG 0.621539 3:+84753945 MsG0380016530.01.T01:CDS
TGTCCAGCCATGACCTCCAG+GGG 0.633773 3:-84754119 None:intergenic
GAATCATAGCCCATCCCAGT+CGG 0.633968 3:-84753974 None:intergenic
GTTGTTATGGAAGATGAGGA+TGG 0.634471 3:-84750117 None:intergenic
AAGGCCAAGATTAAGAGTCA+AGG 0.638913 3:+84753893 MsG0380016530.01.T01:CDS
CCTTCATGTATGGTGTGTGG+TGG 0.639025 3:-84750210 None:intergenic
ATGCATGCAAGCATTGGTAA+GGG 0.640516 3:+84752773 MsG0380016530.01.T01:CDS
TCCTTTCTTACCCATCTGAG+AGG 0.647484 3:-84750449 None:intergenic
CACCAACGACACCACAGTGG+AGG 0.650201 3:+84753836 MsG0380016530.01.T01:CDS
AATTGTTGTTATGGAAGATG+AGG 0.653084 3:-84750121 None:intergenic
TCATAGCCCATCCCAGTCGG+AGG 0.653601 3:-84753971 None:intergenic
GGTCCTTCATGTATGGTGTG+TGG 0.670230 3:-84750213 None:intergenic
AGATTGCAAGCACTTGTGAG+GGG 0.683402 3:+84752714 MsG0380016530.01.T01:CDS
TTGTGAGGGGACATAATGTG+CGG 0.702353 3:+84752727 MsG0380016530.01.T01:CDS
TGACTCACGACAAACACGAG+CGG 0.737315 3:+84752829 MsG0380016530.01.T01:CDS
CACCACCAACGACACCACAG+TGG 0.740022 3:+84753833 MsG0380016530.01.T01:CDS
GTCCAGCCATGACCTCCAGG+GGG 0.740945 3:-84754118 None:intergenic
AGCTAGGTACACCTCCACTG+TGG 0.765897 3:-84753847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTGTATTAGATTGTA+CGG + Chr3:84752529-84752548 MsG0380016530.01.T01:intron 15.0%
!! ATATAATTACATACTGTATA+GGG - Chr3:84751196-84751215 None:intergenic 15.0%
!! CAAAACTATATTATATATTG+TGG - Chr3:84753493-84753512 None:intergenic 15.0%
!! TATGTAATTATATGTGTATA+TGG + Chr3:84751203-84751222 MsG0380016530.01.T01:intron 15.0%
!!! ACAATCCTATTTAATTTTTA+AGG + Chr3:84750364-84750383 MsG0380016530.01.T01:intron 15.0%
!!! ATTTGAGTTAAAATTTCTTT+TGG + Chr3:84750702-84750721 MsG0380016530.01.T01:intron 15.0%
!!! TATGAGAAAAATCTATTTTT+TGG - Chr3:84750882-84750901 None:intergenic 15.0%
!!! TCTATTCATTTTAATTAGAT+GGG - Chr3:84753060-84753079 None:intergenic 15.0%
!!! TTTGAGTTAAAATTTCTTTT+GGG + Chr3:84750703-84750722 MsG0380016530.01.T01:intron 15.0%
!!! TTTTTACAGACAAATATTAA+TGG - Chr3:84753331-84753350 None:intergenic 15.0%
!! ACTCATAATTAACAATCATT+TGG - Chr3:84751421-84751440 None:intergenic 20.0%
!! ATAAAACAAGTAATATGAGT+TGG - Chr3:84753145-84753164 None:intergenic 20.0%
!! ATAAGTAATGCTACATATTA+TGG + Chr3:84751040-84751059 MsG0380016530.01.T01:intron 20.0%
!! CAAAAAGAAAAAAGAAAGAA+AGG - Chr3:84750560-84750579 None:intergenic 20.0%
!! CATATAATTACATACTGTAT+AGG - Chr3:84751197-84751216 None:intergenic 20.0%
!! GGAAACCTTAAAAATTAAAT+AGG - Chr3:84750372-84750391 None:intergenic 20.0%
!! TGTTTATGTATCTAAATTTG+AGG - Chr3:84750290-84750309 None:intergenic 20.0%
!! TTGTTAAATACAAGAGAATT+GGG + Chr3:84753034-84753053 MsG0380016530.01.T01:intron 20.0%
!! TTTGTTAAATACAAGAGAAT+TGG + Chr3:84753033-84753052 MsG0380016530.01.T01:intron 20.0%
!!! ATATTAATGGTCAATTTGTT+AGG - Chr3:84753318-84753337 None:intergenic 20.0%
!!! CTCTATTCATTTTAATTAGA+TGG - Chr3:84753061-84753080 None:intergenic 20.0%
!!! TATTAATGGTCAATTTGTTA+GGG - Chr3:84753317-84753336 None:intergenic 20.0%
!!! TCTTTTTGAAAACATTTATC+AGG + Chr3:84750572-84750591 MsG0380016530.01.T01:intron 20.0%
!!! TGACTAAATACTGATTATTA+TGG - Chr3:84750944-84750963 None:intergenic 20.0%
!!! TTCAGTAAACAAACAAATTT+TGG - Chr3:84750628-84750647 None:intergenic 20.0%
! AACAATGACTTAATCTATGT+TGG + Chr3:84751944-84751963 MsG0380016530.01.T01:intron 25.0%
! AATCAATGTGACTTTAATGT+TGG - Chr3:84752476-84752495 None:intergenic 25.0%
! ACAATGACTTAATCTATGTT+GGG + Chr3:84751945-84751964 MsG0380016530.01.T01:intron 25.0%
! ATGAGTGTATGACATATTTA+TGG - Chr3:84752374-84752393 None:intergenic 25.0%
! ATGTTATCCTTTATTGTGAA+AGG - Chr3:84751073-84751092 None:intergenic 25.0%
! ATTATGAGTGAAGGATTATT+TGG + Chr3:84751432-84751451 MsG0380016530.01.T01:intron 25.0%
! CAAGCATCAAATATGTTAAA+AGG - Chr3:84753387-84753406 None:intergenic 25.0%
! CATTTACTGTACTTATATGT+AGG - Chr3:84751098-84751117 None:intergenic 25.0%
! CTAAGAAAAAATGAATAACC+TGG - Chr3:84753004-84753023 None:intergenic 25.0%
! GACTTAAATCATGAAATTCT+TGG - Chr3:84753802-84753821 None:intergenic 25.0%
! GGAAGAAAAATAACATTGAT+TGG - Chr3:84750599-84750618 None:intergenic 25.0%
! TATCACAATCAAACAATGTT+AGG + Chr3:84753648-84753667 MsG0380016530.01.T01:CDS 25.0%
! TGAAATAAATTGTGTTCGTT+CGG + Chr3:84751634-84751653 MsG0380016530.01.T01:intron 25.0%
! TGATTGTTAATTATGAGTGA+AGG + Chr3:84751423-84751442 MsG0380016530.01.T01:intron 25.0%
! TTTCACTATCATCAACATTT+GGG - Chr3:84753568-84753587 None:intergenic 25.0%
!! AAGCAATTTATGCTTTCTTT+TGG - Chr3:84751011-84751030 None:intergenic 25.0%
!! AAGTCTTCTTTTATCTGTTT+TGG + Chr3:84752278-84752297 MsG0380016530.01.T01:intron 25.0%
!! AATACAAATATTTTCCATGC+AGG - Chr3:84752521-84752540 None:intergenic 25.0%
!! CTTTTAACATATTTGATGCT+TGG + Chr3:84753385-84753404 MsG0380016530.01.T01:intron 25.0%
!! TGAAATCCTAATTGTTGTTA+TGG - Chr3:84750133-84750152 None:intergenic 25.0%
!!! AACAAACAAATTTTGGTGAA+TGG - Chr3:84750621-84750640 None:intergenic 25.0%
!!! ACAAACAAATTTTGGTGAAT+GGG - Chr3:84750620-84750639 None:intergenic 25.0%
!!! ATTAATGGTCAATTTGTTAG+GGG - Chr3:84753316-84753335 None:intergenic 25.0%
!!! TTTTTGAGACTTGATCAAAA+TGG - Chr3:84750661-84750680 None:intergenic 25.0%
AAAATGAATAGAGTGTAGAG+TGG + Chr3:84753068-84753087 MsG0380016530.01.T01:intron 30.0%
AAGTTAGTTGCTCAATTTAG+AGG + Chr3:84753171-84753190 MsG0380016530.01.T01:intron 30.0%
ACATGTTAAGTTCACATGAT+AGG - Chr3:84751232-84751251 None:intergenic 30.0%
AGCTAATGACAGAAAAACAT+AGG - Chr3:84752618-84752637 None:intergenic 30.0%
ATGTTAAGTTCACATGATAG+GGG - Chr3:84751230-84751249 None:intergenic 30.0%
ATTAATTCTGTGGTTCAGTA+TGG + Chr3:84752347-84752366 MsG0380016530.01.T01:intron 30.0%
CACTATGGAAATCTAACATT+GGG - Chr3:84751344-84751363 None:intergenic 30.0%
CAGATAAAAGAAGACTTACT+AGG - Chr3:84752275-84752294 None:intergenic 30.0%
CATCTTCCATAACAACAATT+AGG + Chr3:84750124-84750143 MsG0380016530.01.T01:five_prime_UTR 30.0%
CATGTTAAGTTCACATGATA+GGG - Chr3:84751231-84751250 None:intergenic 30.0%
CATTCTCTTCGTAACATATA+AGG + Chr3:84750308-84750327 MsG0380016530.01.T01:intron 30.0%
CTTTCACTATCATCAACATT+TGG - Chr3:84753569-84753588 None:intergenic 30.0%
GTAACTGAAAGTTTGAAAGT+AGG - Chr3:84752398-84752417 None:intergenic 30.0%
TAATTAAGTGATTAACCAGC+TGG - Chr3:84751381-84751400 None:intergenic 30.0%
TAATTGATTGAGTGTGTTCA+GGG - Chr3:84752571-84752590 None:intergenic 30.0%
TCAAAGTAGCCAGAAAATTA+AGG + Chr3:84752911-84752930 MsG0380016530.01.T01:CDS 30.0%
TCTCATAGACAATAAGAATC+TGG + Chr3:84750895-84750914 MsG0380016530.01.T01:intron 30.0%
TGAAGAAAAAACAGTTGACA+TGG + Chr3:84753727-84753746 MsG0380016530.01.T01:CDS 30.0%
TGACACTTGCAATATATGAT+CGG + Chr3:84752438-84752457 MsG0380016530.01.T01:intron 30.0%
TTAATTGATTGAGTGTGTTC+AGG - Chr3:84752572-84752591 None:intergenic 30.0%
! AATCAGTGTCCTTAATTTTC+TGG - Chr3:84752923-84752942 None:intergenic 30.0%
! AATTGTTGTTATGGAAGATG+AGG - Chr3:84750124-84750143 None:intergenic 30.0%
! GTTGTAGTTGTTGTCTTTTA+TGG + Chr3:84751127-84751146 MsG0380016530.01.T01:intron 30.0%
! TCTTTTATGGAACCACATAA+AGG + Chr3:84751140-84751159 MsG0380016530.01.T01:intron 30.0%
! TTTTCACTTTCAGAAGGAAA+AGG + Chr3:84751972-84751991 MsG0380016530.01.T01:intron 30.0%
!! AAATTAAGGACACTGATTTC+AGG + Chr3:84752925-84752944 MsG0380016530.01.T01:CDS 30.0%
!! TTAATGGTCAATTTGTTAGG+GGG - Chr3:84753315-84753334 None:intergenic 30.0%
!!! AGTTTTCAAGTCTTCTTCTA+AGG + Chr3:84750498-84750517 MsG0380016530.01.T01:CDS 30.0%
!!! TATGCTTTCTTTTGGTTTCT+TGG - Chr3:84751003-84751022 None:intergenic 30.0%
AAAAACAGTTGACATGGACA+TGG + Chr3:84753733-84753752 MsG0380016530.01.T01:CDS 35.0%
AAACACTGATGAGACTGTTT+GGG + Chr3:84751485-84751504 MsG0380016530.01.T01:intron 35.0%
ACACAAATGGTTGGAACTAT+AGG + Chr3:84752886-84752905 MsG0380016530.01.T01:CDS 35.0%
ACATGGAGCTACAATGAATA+AGG + Chr3:84752950-84752969 MsG0380016530.01.T01:CDS 35.0%
ACGACAAAGTTAGACACAAA+TGG + Chr3:84752873-84752892 MsG0380016530.01.T01:CDS 35.0%
AGAAGGAAAAGGAAGAGAAT+TGG + Chr3:84751983-84752002 MsG0380016530.01.T01:intron 35.0%
AGCTGTTCCATTTCGTATAT+AGG + Chr3:84752656-84752675 MsG0380016530.01.T01:intron 35.0%
AGGTAGATTCATCCTTTATG+TGG - Chr3:84751155-84751174 None:intergenic 35.0%
AGTGCATATAGTCGTCTATT+TGG - Chr3:84751905-84751924 None:intergenic 35.0%
ATATCATCAGTGGGTGTATA+TGG - Chr3:84753704-84753723 None:intergenic 35.0%
ATATCTGGTGAACTATATGC+AGG - Chr3:84752048-84752067 None:intergenic 35.0%
ATCATTGTAGTAAACCTGCA+TGG + Chr3:84752504-84752523 MsG0380016530.01.T01:intron 35.0%
ATGATTTCTCTCTTCAGTCA+AGG - Chr3:84752100-84752119 None:intergenic 35.0%
ATTCATGGGACAGTAATGTT+TGG - Chr3:84750180-84750199 None:intergenic 35.0%
CAAACAATGTTAGGCCTTTA+GGG + Chr3:84753657-84753676 MsG0380016530.01.T01:CDS 35.0%
CAAAGTTAGACACAAATGGT+TGG + Chr3:84752877-84752896 MsG0380016530.01.T01:CDS 35.0%
CAATTCAGACAACATGTTAG+AGG - Chr3:84750393-84750412 None:intergenic 35.0%
CAGTGTACCTTTCACAATAA+AGG + Chr3:84751063-84751082 MsG0380016530.01.T01:intron 35.0%
CATATAGTCGTCTATTTGGA+TGG - Chr3:84751901-84751920 None:intergenic 35.0%
CATGAAATTCTTGGTTCATG+AGG - Chr3:84753793-84753812 None:intergenic 35.0%
GAGTGAAGGATTATTTGGAT+CGG + Chr3:84751437-84751456 MsG0380016530.01.T01:intron 35.0%
GATGAATGATGTGATGTGTT+AGG - Chr3:84751304-84751323 None:intergenic 35.0%
GCACTATGGAAATCTAACAT+TGG - Chr3:84751345-84751364 None:intergenic 35.0%
GCAGCATCATATTAATTCTG+TGG + Chr3:84752337-84752356 MsG0380016530.01.T01:intron 35.0%
TAAACACTGATGAGACTGTT+TGG + Chr3:84751484-84751503 MsG0380016530.01.T01:intron 35.0%
TACTAGGTATCCTCTATAGT+AGG - Chr3:84752259-84752278 None:intergenic 35.0%
TCAAACAATGTTAGGCCTTT+AGG + Chr3:84753656-84753675 MsG0380016530.01.T01:CDS 35.0%
TCTTCAGACATATCATCAGT+GGG - Chr3:84753713-84753732 None:intergenic 35.0%
TGATTTCTCTCTTCAGTCAA+GGG - Chr3:84752099-84752118 None:intergenic 35.0%
TGTAGCATTACTTATACTGC+AGG - Chr3:84751035-84751054 None:intergenic 35.0%
TTCTTCAGACATATCATCAG+TGG - Chr3:84753714-84753733 None:intergenic 35.0%
TTTGTGTCTAACTTTGTCGT+AGG - Chr3:84752873-84752892 None:intergenic 35.0%
! AGGCGAATCCCATTAATTTT+TGG - Chr3:84754052-84754071 None:intergenic 35.0%
! CCTTCAATCTAAACGGATTT+CGG + Chr3:84754069-84754088 MsG0380016530.01.T01:CDS 35.0%
! CTTCAATCTAAACGGATTTC+GGG + Chr3:84754070-84754089 MsG0380016530.01.T01:CDS 35.0%
! GATGGATTTGTTTAGCACTA+TGG - Chr3:84751359-84751378 None:intergenic 35.0%
! GGATTGTTACCTTGTCTTTT+AGG - Chr3:84750351-84750370 None:intergenic 35.0%
! GGCGAATCCCATTAATTTTT+GGG - Chr3:84754051-84754070 None:intergenic 35.0%
! TGTGGTAATGATTCTTCAGA+TGG - Chr3:84753475-84753494 None:intergenic 35.0%
!! AGATGAATGTTGGTAGTTAC+TGG - Chr3:84750237-84750256 None:intergenic 35.0%
!! ATCCCATTAATTTTTGGGCT+TGG - Chr3:84754046-84754065 None:intergenic 35.0%
!! CTAAGGAAGTATTGTGAAGT+AGG + Chr3:84753258-84753277 MsG0380016530.01.T01:intron 35.0%
!! TAATGGTCAATTTGTTAGGG+GGG - Chr3:84753314-84753333 None:intergenic 35.0%
!! TCCCATTAATTTTTGGGCTT+GGG - Chr3:84754045-84754064 None:intergenic 35.0%
!!! GGACTTTTTTCACTTTCAGA+AGG + Chr3:84751966-84751985 MsG0380016530.01.T01:intron 35.0%
!!! GTGGCATTTTTGAGATTCAT+GGG - Chr3:84750194-84750213 None:intergenic 35.0%
AAGGCCAAGATTAAGAGTCA+AGG + Chr3:84753893-84753912 MsG0380016530.01.T01:CDS 40.0%
AGACTCAATCCATGCAAACA+TGG + Chr3:84753766-84753785 MsG0380016530.01.T01:CDS 40.0%
AGCCCAAGCCCAAAAATTAA+TGG + Chr3:84754040-84754059 MsG0380016530.01.T01:CDS 40.0%
AGGTCATGGACATAACTCTA+AGG + Chr3:84752206-84752225 MsG0380016530.01.T01:CDS 40.0%
AGTTACTGGTCCTTCATGTA+TGG - Chr3:84750223-84750242 None:intergenic 40.0%
CAACCAGTTCCAATCCAATT+GGG - Chr3:84753615-84753634 None:intergenic 40.0%
CCAACATTCATCTCAGAAAC+AGG + Chr3:84750244-84750263 MsG0380016530.01.T01:five_prime_UTR 40.0%
CCGAAATCCGTTTAGATTGA+AGG - Chr3:84754072-84754091 None:intergenic 40.0%
CGTGTATGTCCTAAAAGACA+AGG + Chr3:84750339-84750358 MsG0380016530.01.T01:intron 40.0%
CTCAACTCTACAAGAGAACA+AGG + Chr3:84750522-84750541 MsG0380016530.01.T01:CDS 40.0%
CTCATTCAGTCCTACTATAG+AGG + Chr3:84752246-84752265 MsG0380016530.01.T01:CDS 40.0%
CTTCCTTCATTCGTGATATC+TGG - Chr3:84752063-84752082 None:intergenic 40.0%
GACTCAATCCATGCAAACAT+GGG + Chr3:84753767-84753786 MsG0380016530.01.T01:CDS 40.0%
GATGAATCTACCTTGCCTTT+AGG + Chr3:84751162-84751181 MsG0380016530.01.T01:intron 40.0%
GCATAGAAAACCACATGCAA+AGG + Chr3:84753441-84753460 MsG0380016530.01.T01:intron 40.0%
GCCCAAGCCCAAAAATTAAT+GGG + Chr3:84754041-84754060 MsG0380016530.01.T01:CDS 40.0%
GGATTCGCCTTCAATCTAAA+CGG + Chr3:84754062-84754081 MsG0380016530.01.T01:CDS 40.0%
GTTGTTATGGAAGATGAGGA+TGG - Chr3:84750120-84750139 None:intergenic 40.0%
TAAGCTATCCAGAGAGCTAA+TGG - Chr3:84751557-84751576 None:intergenic 40.0%
TAAGTGATTAACCAGCTGGA+TGG - Chr3:84751377-84751396 None:intergenic 40.0%
TACATACTGTATAGGGTTGC+TGG - Chr3:84751189-84751208 None:intergenic 40.0%
TCACCAGATATCACGAATGA+AGG + Chr3:84752057-84752076 MsG0380016530.01.T01:CDS 40.0%
! GACTAATTCCATTAGCTCTC+TGG + Chr3:84751546-84751565 MsG0380016530.01.T01:intron 40.0%
! GCTTGGTGACTACACAAAAA+CGG + Chr3:84753402-84753421 MsG0380016530.01.T01:intron 40.0%
! GGAATTGATTCCTTTGCATG+TGG - Chr3:84753454-84753473 None:intergenic 40.0%
! TTTGCATGGATTGAGTCTCT+TGG - Chr3:84753764-84753783 None:intergenic 40.0%
!! AATGTTAGGCCTTTAGGGTT+GGG + Chr3:84753662-84753681 MsG0380016530.01.T01:CDS 40.0%
!! ATGCATGCAAGCATTGGTAA+GGG + Chr3:84752773-84752792 MsG0380016530.01.T01:CDS 40.0%
!! CCTGTTTCTGAGATGAATGT+TGG - Chr3:84750247-84750266 None:intergenic 40.0%
!! GACACTGATTTCAGGAAACA+TGG + Chr3:84752933-84752952 MsG0380016530.01.T01:CDS 40.0%
!!! GGTGGCATTTTTGAGATTCA+TGG - Chr3:84750195-84750214 None:intergenic 40.0%
AATGCGATGCATGCAAGCAT+TGG + Chr3:84752767-84752786 MsG0380016530.01.T01:CDS 45.0%
ACATAGCCTTTCCTCTCAGA+TGG + Chr3:84750438-84750457 MsG0380016530.01.T01:exon 45.0%
ACCATCGGGATCTACATGAA+AGG - Chr3:84753211-84753230 None:intergenic 45.0%
ACCTTTCATGTAGATCCCGA+TGG + Chr3:84753207-84753226 MsG0380016530.01.T01:intron 45.0%
AGATTGCAAGCACTTGTGAG+GGG + Chr3:84752714-84752733 MsG0380016530.01.T01:CDS 45.0%
AGCTGCTAGAGTTGTGAGAT+TGG + Chr3:84752182-84752201 MsG0380016530.01.T01:CDS 45.0%
AGTAATTGGATGAGCAGCAG+TGG - Chr3:84754017-84754036 None:intergenic 45.0%
ATCAGTGGGTGTATATGGTG+GGG - Chr3:84753699-84753718 None:intergenic 45.0%
CATAGCCTTTCCTCTCAGAT+GGG + Chr3:84750439-84750458 MsG0380016530.01.T01:exon 45.0%
CATCAGTGGGTGTATATGGT+GGG - Chr3:84753700-84753719 None:intergenic 45.0%
CCAACCAGTTCCAATCCAAT+TGG - Chr3:84753616-84753635 None:intergenic 45.0%
CGACTACATCAGTACACCAT+CGG - Chr3:84753226-84753245 None:intergenic 45.0%
CGTCGAGCCTATATACGAAA+TGG - Chr3:84752666-84752685 None:intergenic 45.0%
CGTGTTTGTCGTGAGTCAAT+TGG - Chr3:84752827-84752846 None:intergenic 45.0%
GACTACATCAGTACACCATC+GGG - Chr3:84753225-84753244 None:intergenic 45.0%
GAGATTGCAAGCACTTGTGA+GGG + Chr3:84752713-84752732 MsG0380016530.01.T01:CDS 45.0%
GCTAAACAAATCCATCCAGC+TGG + Chr3:84751363-84751382 MsG0380016530.01.T01:intron 45.0%
GTGAAAGAGCCCAATTGGAT+TGG + Chr3:84753603-84753622 MsG0380016530.01.T01:CDS 45.0%
TACTGATGTAGTCGGTCGTT+AGG + Chr3:84753232-84753251 MsG0380016530.01.T01:intron 45.0%
TATAGGGTTGCTGGTCCTAA+AGG - Chr3:84751180-84751199 None:intergenic 45.0%
TATGGAAGATGAGGATGGTG+AGG - Chr3:84750115-84750134 None:intergenic 45.0%
TCATCAGTGGGTGTATATGG+TGG - Chr3:84753701-84753720 None:intergenic 45.0%
TCCTCTCAGATGGGTAAGAA+AGG + Chr3:84750448-84750467 MsG0380016530.01.T01:exon 45.0%
TCCTTTCTTACCCATCTGAG+AGG - Chr3:84750452-84750471 None:intergenic 45.0%
TCTTACCCATCTGAGAGGAA+AGG - Chr3:84750447-84750466 None:intergenic 45.0%
TGAGATTGCAAGCACTTGTG+AGG + Chr3:84752712-84752731 MsG0380016530.01.T01:CDS 45.0%
TGGGCCTTGACTCTTAATCT+TGG - Chr3:84753900-84753919 None:intergenic 45.0%
TGGGTAAGAAAGGAAGCAGT+TGG + Chr3:84750458-84750477 MsG0380016530.01.T01:CDS 45.0%
TTGTGAGGGGACATAATGTG+CGG + Chr3:84752727-84752746 MsG0380016530.01.T01:CDS 45.0%
! CCAATTGGATTGGAACTGGT+TGG + Chr3:84753613-84753632 MsG0380016530.01.T01:CDS 45.0%
! CGATGGTGTACTGATGTAGT+CGG + Chr3:84753224-84753243 MsG0380016530.01.T01:intron 45.0%
! TGGAGGTGTACCTAGCTATA+TGG + Chr3:84753853-84753872 MsG0380016530.01.T01:CDS 45.0%
!! ATGATTCATCTGGCTCTGGT+GGG + Chr3:84753990-84754009 MsG0380016530.01.T01:CDS 45.0%
!! ATGTTAGGCCTTTAGGGTTG+GGG + Chr3:84753663-84753682 MsG0380016530.01.T01:CDS 45.0%
!! CAATGTTAGGCCTTTAGGGT+TGG + Chr3:84753661-84753680 MsG0380016530.01.T01:CDS 45.0%
!! CGTTGGTGGTGTTTAGAGAT+AGG - Chr3:84753824-84753843 None:intergenic 45.0%
!! GATGCATGCAAGCATTGGTA+AGG + Chr3:84752772-84752791 MsG0380016530.01.T01:CDS 45.0%
!! TATGATTCATCTGGCTCTGG+TGG + Chr3:84753989-84754008 MsG0380016530.01.T01:CDS 45.0%
!! TTCAGTCAAGGGTGTTGATG+TGG - Chr3:84752088-84752107 None:intergenic 45.0%
AGACTGTCTGCGAGAGCTTA+CGG - Chr3:84751844-84751863 None:intergenic 50.0%
AGTCGGTCGTTAGGATGCTA+AGG + Chr3:84753241-84753260 MsG0380016530.01.T01:intron 50.0%
ATTGGAACTGGTTGGAGCGT+TGG + Chr3:84753621-84753640 MsG0380016530.01.T01:CDS 50.0%
CCACCACACACCATACATGA+AGG + Chr3:84750210-84750229 MsG0380016530.01.T01:five_prime_UTR 50.0%
CCTTCATGTATGGTGTGTGG+TGG - Chr3:84750213-84750232 None:intergenic 50.0%
CTGCGAGAGCTTACGGAAAT+GGG - Chr3:84751837-84751856 None:intergenic 50.0%
GAATCATAGCCCATCCCAGT+CGG - Chr3:84753977-84753996 None:intergenic 50.0%
GCTAGAGTTGTGAGATTGGC+AGG + Chr3:84752186-84752205 MsG0380016530.01.T01:CDS 50.0%
GGGCTTGGGCTTCTAGTAAT+TGG - Chr3:84754031-84754050 None:intergenic 50.0%
GGTCCTTCATGTATGGTGTG+TGG - Chr3:84750216-84750235 None:intergenic 50.0%
GTCAAGGCCCATCAAAGCAT+CGG + Chr3:84753909-84753928 MsG0380016530.01.T01:CDS 50.0%
GTTGTGAGATTGGCAGGTCA+TGG + Chr3:84752192-84752211 MsG0380016530.01.T01:CDS 50.0%
TCATGAGGCCCATGTTTGCA+TGG - Chr3:84753778-84753797 None:intergenic 50.0%
TCCATACGCTTTCAACTGCC+AGG + Chr3:84752983-84753002 MsG0380016530.01.T01:CDS 50.0%
TCTGCGAGAGCTTACGGAAA+TGG - Chr3:84751838-84751857 None:intergenic 50.0%
TGACTCACGACAAACACGAG+CGG + Chr3:84752829-84752848 MsG0380016530.01.T01:CDS 50.0%
TGAGCGTGAAAGAGCCCAAT+TGG + Chr3:84753598-84753617 MsG0380016530.01.T01:CDS 50.0%
TGGCCTTTGCAGACTGTGTT+GGG - Chr3:84753880-84753899 None:intergenic 50.0%
TGTGTTGGGGCCATATAGCT+AGG - Chr3:84753866-84753885 None:intergenic 50.0%
! ACCTGGCAGTTGAAAGCGTA+TGG - Chr3:84752987-84753006 None:intergenic 50.0%
! GAGCCCAATTGGATTGGAAC+TGG + Chr3:84753609-84753628 MsG0380016530.01.T01:CDS 50.0%
! GGCTATGATTCATCTGGCTC+TGG + Chr3:84753986-84754005 MsG0380016530.01.T01:CDS 50.0%
! GTATATGGTGGGGTCTCAAG+TGG - Chr3:84753689-84753708 None:intergenic 50.0%
! TCAAGGCCCATCAAAGCATC+GGG + Chr3:84753910-84753929 MsG0380016530.01.T01:CDS 50.0%
! TCTAAACGGATTTCGGGTGC+TGG + Chr3:84754076-84754095 MsG0380016530.01.T01:CDS 50.0%
! TTGGCCTTTGCAGACTGTGT+TGG - Chr3:84753881-84753900 None:intergenic 50.0%
!! AGCAGCAGAGGAGGTATCTA+TGG + Chr3:84752014-84752033 MsG0380016530.01.T01:CDS 50.0%
!! GCAAGCATTGGTAAGGGTTC+AGG + Chr3:84752779-84752798 MsG0380016530.01.T01:CDS 50.0%
!! GGGATGGGCTATGATTCATC+TGG + Chr3:84753980-84753999 MsG0380016530.01.T01:CDS 50.0%
!! TGATTCATCTGGCTCTGGTG+GGG + Chr3:84753991-84754010 MsG0380016530.01.T01:CDS 50.0%
!! TGGTCAATTTGTTAGGGGGG+TGG - Chr3:84753311-84753330 None:intergenic 50.0%
AACGACGCCCGATGCTTTGA+TGG - Chr3:84753920-84753939 None:intergenic 55.0%
ACGACGCCCGATGCTTTGAT+GGG - Chr3:84753919-84753938 None:intergenic 55.0%
ACGTGCACTGCGTGCTTTGA+AGG + Chr3:84752683-84752702 MsG0380016530.01.T01:CDS 55.0%
AGCTAGGTACACCTCCACTG+TGG - Chr3:84753850-84753869 None:intergenic 55.0%
CAAACACGAGCGGACAGTAG+AGG + Chr3:84752839-84752858 MsG0380016530.01.T01:CDS 55.0%
CTTACTGGAGCTCGTCAGCA+CGG + Chr3:84753945-84753964 MsG0380016530.01.T01:CDS 55.0%
GGCCTTTGCAGACTGTGTTG+GGG - Chr3:84753879-84753898 None:intergenic 55.0%
GGTTGCTGGTCCTAAAGGCA+AGG - Chr3:84751175-84751194 None:intergenic 55.0%
TCAAGTGGCCCCAACCCTAA+AGG - Chr3:84753674-84753693 None:intergenic 55.0%
TGCTGCTGTTGCTGCAGCAT+AGG - Chr3:84752130-84752149 None:intergenic 55.0%
TTGGCAGCATGAAGCAGCAG+AGG + Chr3:84752002-84752021 MsG0380016530.01.T01:CDS 55.0%
TTGTCCAGCCATGACCTCCA+GGG - Chr3:84754123-84754142 None:intergenic 55.0%
! CGTGCACTGCGTGCTTTGAA+GGG + Chr3:84752684-84752703 MsG0380016530.01.T01:CDS 55.0%
! GGGCGTCGTTTGGATCTTAC+TGG + Chr3:84753930-84753949 MsG0380016530.01.T01:CDS 55.0%
!! GATTTCGGGTGCTGGTGTTG+AGG + Chr3:84754084-84754103 MsG0380016530.01.T01:CDS 55.0%
!! TCAAAGCATCGGGCGTCGTT+TGG + Chr3:84753920-84753939 MsG0380016530.01.T01:CDS 55.0%
AGCAGCAGCTGAAGCTGCAG+TGG + Chr3:84752146-84752165 MsG0380016530.01.T01:CDS 60.0%
AGCTGAAGCTGCAGTGGCTG+CGG + Chr3:84752152-84752171 MsG0380016530.01.T01:CDS 60.0%
CACCAACGACACCACAGTGG+AGG + Chr3:84753836-84753855 MsG0380016530.01.T01:CDS 60.0%
CACCACCAACGACACCACAG+TGG + Chr3:84753833-84753852 MsG0380016530.01.T01:CDS 60.0%
CCAATTCCCCCTGGAGGTCA+TGG + Chr3:84754112-84754131 MsG0380016530.01.T01:CDS 60.0%
CCATGACCTCCAGGGGGAAT+TGG - Chr3:84754115-84754134 None:intergenic 60.0%
CTTGTCCAGCCATGACCTCC+AGG - Chr3:84754124-84754143 None:intergenic 60.0%
GCAGCATGAAGCAGCAGAGG+AGG + Chr3:84752005-84752024 MsG0380016530.01.T01:CDS 60.0%
GGCCCCAACACAGTCTGCAA+AGG + Chr3:84753874-84753893 MsG0380016530.01.T01:CDS 60.0%
TCATAGCCCATCCCAGTCGG+AGG - Chr3:84753974-84753993 None:intergenic 60.0%
TGTCCAGCCATGACCTCCAG+GGG - Chr3:84754122-84754141 None:intergenic 60.0%
! GATTGGCCAATTCCCCCTGG+AGG + Chr3:84754106-84754125 MsG0380016530.01.T01:CDS 60.0%
!! CACCTCCACTGTGGTGTCGT+TGG - Chr3:84753841-84753860 None:intergenic 60.0%
!! CGGGTGCTGGTGTTGAGGAT+TGG + Chr3:84754089-84754108 MsG0380016530.01.T01:CDS 60.0%
!! CTCCACTGTGGTGTCGTTGG+TGG - Chr3:84753838-84753857 None:intergenic 60.0%
!! GAGGATTGGCCAATTCCCCC+TGG + Chr3:84754103-84754122 MsG0380016530.01.T01:CDS 60.0%
ACGGAGTCCTCCGACTGGGA+TGG + Chr3:84753964-84753983 MsG0380016530.01.T01:CDS 65.0%
CAGCACGGAGTCCTCCGACT+GGG + Chr3:84753960-84753979 MsG0380016530.01.T01:CDS 65.0%
CGGAGTCCTCCGACTGGGAT+GGG + Chr3:84753965-84753984 MsG0380016530.01.T01:CDS 65.0%
GTCCAGCCATGACCTCCAGG+GGG - Chr3:84754121-84754140 None:intergenic 65.0%
TCAGCACGGAGTCCTCCGAC+TGG + Chr3:84753959-84753978 MsG0380016530.01.T01:CDS 65.0%
TTCCCCCTGGAGGTCATGGC+TGG + Chr3:84754116-84754135 MsG0380016530.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 84750091 84754153 84750091 ID=MsG0380016530.01;Name=MsG0380016530.01
Chr3 mRNA 84750091 84754153 84750091 ID=MsG0380016530.01.T01;Parent=MsG0380016530.01;Name=MsG0380016530.01.T01;_AED=0.33;_eAED=0.33;_QI=196|0.75|0.8|1|0.75|0.6|5|0|437
Chr3 exon 84750091 84750265 84750091 ID=MsG0380016530.01.T01:exon:33530;Parent=MsG0380016530.01.T01
Chr3 exon 84750436 84750543 84750436 ID=MsG0380016530.01.T01:exon:33531;Parent=MsG0380016530.01.T01
Chr3 exon 84751985 84752275 84751985 ID=MsG0380016530.01.T01:exon:33532;Parent=MsG0380016530.01.T01
Chr3 exon 84752678 84753004 84752678 ID=MsG0380016530.01.T01:exon:33533;Parent=MsG0380016530.01.T01
Chr3 exon 84753545 84754153 84753545 ID=MsG0380016530.01.T01:exon:33534;Parent=MsG0380016530.01.T01
Chr3 five_prime_UTR 84750091 84750265 84750091 ID=MsG0380016530.01.T01:five_prime_utr;Parent=MsG0380016530.01.T01
Chr3 five_prime_UTR 84750436 84750456 84750436 ID=MsG0380016530.01.T01:five_prime_utr;Parent=MsG0380016530.01.T01
Chr3 CDS 84750457 84750543 84750457 ID=MsG0380016530.01.T01:cds;Parent=MsG0380016530.01.T01
Chr3 CDS 84751985 84752275 84751985 ID=MsG0380016530.01.T01:cds;Parent=MsG0380016530.01.T01
Chr3 CDS 84752678 84753004 84752678 ID=MsG0380016530.01.T01:cds;Parent=MsG0380016530.01.T01
Chr3 CDS 84753545 84754153 84753545 ID=MsG0380016530.01.T01:cds;Parent=MsG0380016530.01.T01
Gene Sequence

>MsG0380016530.01.T01

ATGGGTAAGAAAGGAAGCAGTTGGTTCTCATCTGTGAAGAAAGTTTTCAAGTCTTCTTCTAAGGACTCAACTCTACAAGAGAACAAGAAGGAAAAGGAAGAGAATTGGCAGCATGAAGCAGCAGAGGAGGTATCTATGGAGCATTTTCCTGCATATAGTTCACCAGATATCACGAATGAAGGAAGCACCACATCAACACCCTTGACTGAAGAGAGAAATCATGCAATTGCCTATGCTGCAGCAACAGCAGCAGCAGCTGAAGCTGCAGTGGCTGCGGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCAGGTCATGGACATAACTCTAAGGTTGAAAAAGCAGCAATACTCATTCAGTCCTACTATAGAGGATACCTAGCTCGACGTGCACTGCGTGCTTTGAAGGGATTAGTGAGATTGCAAGCACTTGTGAGGGGACATAATGTGCGGAAGCAAGCACAGATGACAATGCGATGCATGCAAGCATTGGTAAGGGTTCAGGCAAGAGTAAGAGCTCGCAGACTCCAATTGACTCACGACAAACACGAGCGGACAGTAGAGGAACAACATCCTACGACAAAGTTAGACACAAATGGTTGGAACTATAGGCGTCAAAGTAGCCAGAAAATTAAGGACACTGATTTCAGGAAACATGGAGCTACAATGAATAAGGAGAAAGCTCTTCCATACGCTTTCAACTGCCAGAAGCAATATTTGCACATAGACCCAAATGTTGATGATAGTGAAAGTTACAGCAATGAGCGTGAAAGAGCCCAATTGGATTGGAACTGGTTGGAGCGTTGGATGTTATCACAATCAAACAATGTTAGGCCTTTAGGGTTGGGGCCACTTGAGACCCCACCATATACACCCACTGATGATATGTCTGAAGAAAAAACAGTTGACATGGACATGGTTGCACCAAGAGACTCAATCCATGCAAACATGGGCCTCATGAACCAAGAATTTCATGATTTAAGTCCTATCTCTAAACACCACCAACGACACCACAGTGGAGGTGTACCTAGCTATATGGCCCCAACACAGTCTGCAAAGGCCAAGATTAAGAGTCAAGGCCCATCAAAGCATCGGGCGTCGTTTGGATCTTACTGGAGCTCGTCAGCACGGAGTCCTCCGACTGGGATGGGCTATGATTCATCTGGCTCTGGTGGGGCCACTGCTGCTCATCCAATTACTAGAAGCCCAAGCCCAAAAATTAATGGGATTCGCCTTCAATCTAAACGGATTTCGGGTGCTGGTGTTGAGGATTGGCCAATTCCCCCTGGAGGTCATGGCTGGACAAGATTTGATTGA

Protein sequence

>MsG0380016530.01.T01

MGKKGSSWFSSVKKVFKSSSKDSTLQENKKEKEENWQHEAAEEVSMEHFPAYSSPDITNEGSTTSTPLTEERNHAIAYAAATAAAAEAAVAAAQAAARVVRLAGHGHNSKVEKAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLTHDKHERTVEEQHPTTKLDTNGWNYRRQSSQKIKDTDFRKHGATMNKEKALPYAFNCQKQYLHIDPNVDDSESYSNERERAQLDWNWLERWMLSQSNNVRPLGLGPLETPPYTPTDDMSEEKTVDMDMVAPRDSIHANMGLMNQEFHDLSPISKHHQRHHSGGVPSYMAPTQSAKAKIKSQGPSKHRASFGSYWSSSARSPPTGMGYDSSGSGGATAAHPITRSPSPKINGIRLQSKRISGAGVEDWPIPPGGHGWTRFD*