AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040567.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040567.01.T01 MTR_7g092820 99.145 234 2 0 1 234 1 234 4.00e-176 483
MsG0780040567.01.T01 MTR_4g015860 34.177 158 102 2 39 194 50 207 7.01e-25 98.2
MsG0780040567.01.T01 MTR_3g075540 26.064 188 135 1 17 200 52 239 2.67e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040567.01.T01 AT2G42220 63.839 224 77 1 4 227 10 229 1.40e-106 307
MsG0780040567.01.T01 AT3G08920 36.478 159 99 2 39 195 37 195 4.23e-29 108
MsG0780040567.01.T01 AT4G24750 29.747 158 109 2 44 200 85 241 6.02e-17 78.6

Find 59 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTCTTAAACATTTAAA+TGG 0.144808 7:+79271781 None:intergenic
ATGTTATGCATGCTACATTT+TGG 0.221380 7:+79272415 None:intergenic
GTGTAGGTACATTCTTATTA+AGG 0.261610 7:-79274019 MsG0780040567.01.T01:intron
CCTTCTGGTAGTACAGAAAA+AGG 0.277913 7:-79271655 MsG0780040567.01.T01:three_prime_UTR
TTCACAGATTGTACGAAATC+AGG 0.303070 7:+79273939 None:intergenic
GAAATATGAGACTAGAATTA+AGG 0.317983 7:-79271973 MsG0780040567.01.T01:three_prime_UTR
CTGTACTACCAGAAGGAAAC+TGG 0.324785 7:+79271662 None:intergenic
ACAATCAAGAGTTTAGTTTC+AGG 0.345374 7:+79273903 None:intergenic
TAAACTCTTGATTGTTTGTC+AGG 0.363215 7:-79273895 MsG0780040567.01.T01:CDS
GGAAAGAGATAATGTTAGTA+TGG 0.376907 7:-79271913 MsG0780040567.01.T01:three_prime_UTR
AAGGAACTTGTAAAAGTAGA+TGG 0.379059 7:-79274503 MsG0780040567.01.T01:CDS
CTGATCCAACTGGTCCCTTC+AGG 0.389584 7:-79272054 MsG0780040567.01.T01:CDS
ATCAGCTTCTCTGCTTGATC+AGG 0.390870 7:+79272072 None:intergenic
CACAATGCAAGGAGCATGCC+AGG 0.391332 7:-79274605 MsG0780040567.01.T01:CDS
GAATGCTGGCAAAGCTGGTT+TGG 0.410102 7:-79272245 MsG0780040567.01.T01:CDS
TGCAGCAGCAAATAAGTTAG+AGG 0.420677 7:-79272448 MsG0780040567.01.T01:CDS
ATGTGATGTGAATGAGGTTA+TGG 0.421325 7:-79271939 MsG0780040567.01.T01:three_prime_UTR
TTGCAGAATGCTGGCAAAGC+TGG 0.432034 7:-79272250 MsG0780040567.01.T01:CDS
GACTTCTTAAACATTTAAAT+GGG 0.435723 7:+79271782 None:intergenic
CTCTTGATTGTTTGTCAGGA+AGG 0.443131 7:-79273891 MsG0780040567.01.T01:CDS
GTAGGGACATTTGAATCTGT+TGG 0.448414 7:-79272283 MsG0780040567.01.T01:intron
AATGTAGCATGCATAACATC+TGG 0.456689 7:-79272411 MsG0780040567.01.T01:CDS
CATTGAGATACTAGCTTCCC+TGG 0.458379 7:+79274587 None:intergenic
TCGACGGAGTTGCAGAATGC+TGG 0.475813 7:-79272259 MsG0780040567.01.T01:CDS
ACACACATTCTCACAATGGC+AGG 0.476693 7:-79274831 MsG0780040567.01.T01:exon
GATTGTACGAAATCAGGGTT+TGG 0.480874 7:+79273945 None:intergenic
AGCAGAGAAGCTGATCCAAC+TGG 0.489566 7:-79272064 MsG0780040567.01.T01:CDS
TTCAAACATAGTAAGTTGCC+AGG 0.491819 7:-79271742 MsG0780040567.01.T01:three_prime_UTR
TAATGTTAGTATGGCTATCA+TGG 0.501704 7:-79271904 MsG0780040567.01.T01:three_prime_UTR
GCAAATAAGTTAGAGGATGC+TGG 0.503197 7:-79272441 MsG0780040567.01.T01:CDS
TCAGCAACTTAGGGAGATGT+TGG 0.512330 7:-79274643 MsG0780040567.01.T01:intron
TCAGGGTTTGGCCTAGTGAA+TGG 0.517866 7:+79273957 None:intergenic
GAAAATACAGACAATGATCC+TGG 0.526626 7:-79274398 MsG0780040567.01.T01:intron
CTTCAAATAACAAATTGTCC+TGG 0.529922 7:+79271724 None:intergenic
CTCTGCTTGATCAGGAAAGA+AGG 0.530924 7:+79272080 None:intergenic
TCACAGATTGTACGAAATCA+GGG 0.530989 7:+79273940 None:intergenic
AGGGGAAAACAACTAATCAA+TGG 0.533245 7:+79272016 None:intergenic
CAACTTAGGGAGATGTTGGT+TGG 0.543322 7:-79274639 MsG0780040567.01.T01:CDS
TTGTTTGTCAGGAAGGATTG+AGG 0.546160 7:-79273884 MsG0780040567.01.T01:intron
ATTTGAATCTGTTGGCTCGA+CGG 0.558341 7:-79272275 MsG0780040567.01.T01:CDS
CTTAGCCTGAAGGGACCAGT+TGG 0.559659 7:+79272049 None:intergenic
TGTAACAGCTGATGATGCTA+AGG 0.563299 7:-79274522 MsG0780040567.01.T01:CDS
ATGTAACATGCATTATGTGA+GGG 0.566321 7:+79271997 None:intergenic
GGACTGCTTTCTCAACCTCC+TGG 0.569209 7:-79274809 MsG0780040567.01.T01:intron
AAGTTAAACACTACCACAGT+GGG 0.569586 7:+79271862 None:intergenic
GCTGGTTTGGTGCAAATCCA+AGG 0.574370 7:-79272232 MsG0780040567.01.T01:CDS
TATCTCAATGTAAAATGAGA+AGG 0.578861 7:-79274574 MsG0780040567.01.T01:CDS
TCTTTGGGATACCATTCACT+AGG 0.582807 7:-79273968 MsG0780040567.01.T01:CDS
TATGTAACATGCATTATGTG+AGG 0.589318 7:+79271996 None:intergenic
GATATAATGTTCTTGATGTG+AGG 0.619269 7:-79274481 MsG0780040567.01.T01:CDS
GGACTTCAAACTGTGAAACC+AGG 0.620690 7:-79272390 MsG0780040567.01.T01:intron
ATATAATGTTCTTGATGTGA+GGG 0.640539 7:-79274480 MsG0780040567.01.T01:CDS
ATGTGAATGAGGTTATGGAA+TGG 0.647615 7:-79271934 MsG0780040567.01.T01:three_prime_UTR
ACAATGCAAGGAGCATGCCA+GGG 0.648008 7:-79274604 MsG0780040567.01.T01:CDS
TGTAACATGCATTATGTGAG+GGG 0.651984 7:+79271998 None:intergenic
CACACATTCTCACAATGGCA+GGG 0.653331 7:-79274830 MsG0780040567.01.T01:exon
ACAAACACACATTCTCACAA+TGG 0.693697 7:-79274835 MsG0780040567.01.T01:exon
AAAGTTAAACACTACCACAG+TGG 0.746658 7:+79271861 None:intergenic
CTAGATTGTCTATCCCACTG+TGG 0.766551 7:-79271875 MsG0780040567.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAGTTTTAAAATTGT+AGG - Chr7:79272165-79272184 MsG0780040567.01.T01:intron 10.0%
!!! TGTTTTTTTATAAATTTGTA+AGG - Chr7:79273862-79273881 MsG0780040567.01.T01:intron 10.0%
!! ATATAATTAGCAATCAAAAA+GGG + Chr7:79272631-79272650 None:intergenic 15.0%
!! TATATAATTAGCAATCAAAA+AGG + Chr7:79272632-79272651 None:intergenic 15.0%
!!! AAATTCATTTTTGAATATTG+TGG + Chr7:79273331-79273350 None:intergenic 15.0%
!!! ATAGTATAAATAATTTTGGA+AGG + Chr7:79272111-79272130 None:intergenic 15.0%
!!! ATGCATAGTATAAATAATTT+TGG + Chr7:79272115-79272134 None:intergenic 15.0%
!!! TAAACATTTTAACATTAATC+TGG - Chr7:79272216-79272235 MsG0780040567.01.T01:CDS 15.0%
!!! TTTATAAAAAAACACTGTTT+TGG + Chr7:79273856-79273875 None:intergenic 15.0%
!! AAAAAGAGATACATAGATAA+AGG - Chr7:79272779-79272798 MsG0780040567.01.T01:intron 20.0%
!! GACTTCTTAAACATTTAAAT+GGG + Chr7:79274692-79274711 None:intergenic 20.0%
!! TAAAATATATCCATTCTGTA+GGG - Chr7:79274171-79274190 MsG0780040567.01.T01:intron 20.0%
!! TATCCTCATATTATAACAAT+TGG + Chr7:79273229-79273248 None:intergenic 20.0%
!! TGACTTCTTAAACATTTAAA+TGG + Chr7:79274693-79274712 None:intergenic 20.0%
!! TTAAAATATATCCATTCTGT+AGG - Chr7:79274170-79274189 MsG0780040567.01.T01:intron 20.0%
!!! TTCAAGTTATGAAAATTCAT+AGG + Chr7:79273940-79273959 None:intergenic 20.0%
!!! TTCTGTTTTATGAAATTTTC+AGG - Chr7:79274351-79274370 MsG0780040567.01.T01:intron 20.0%
! AACACATAGAAATTTAGGTA+TGG - Chr7:79273802-79273821 MsG0780040567.01.T01:intron 25.0%
! AACATGATTATGAGTGATTA+AGG - Chr7:79271797-79271816 MsG0780040567.01.T01:three_prime_UTR 25.0%
! AAGCCAATTGTTATAATATG+AGG - Chr7:79273223-79273242 MsG0780040567.01.T01:intron 25.0%
! AATCAATGATTAACTAAACC+TGG + Chr7:79274102-79274121 None:intergenic 25.0%
! AATCTTCAAATTACATCTCA+AGG + Chr7:79273975-79273994 None:intergenic 25.0%
! ACACATAGAAATTTAGGTAT+GGG - Chr7:79273803-79273822 MsG0780040567.01.T01:intron 25.0%
! ATATAATGTTCTTGATGTGA+GGG - Chr7:79271991-79272010 MsG0780040567.01.T01:three_prime_UTR 25.0%
! GAAATATGAGACTAGAATTA+AGG - Chr7:79274498-79274517 MsG0780040567.01.T01:CDS 25.0%
! TACCTAATATTGAGAAACAT+GGG - Chr7:79272810-79272829 MsG0780040567.01.T01:intron 25.0%
! TATCTCAATGTAAAATGAGA+AGG - Chr7:79271897-79271916 MsG0780040567.01.T01:three_prime_UTR 25.0%
! TCATGTAAAAAAATAGGGTA+AGG + Chr7:79273608-79273627 None:intergenic 25.0%
!! GGAATTACTAATTTGAAGTT+CGG - Chr7:79273828-79273847 MsG0780040567.01.T01:intron 25.0%
!! TAATTTTTCCTTCTTTGTCA+AGG - Chr7:79273995-79274014 MsG0780040567.01.T01:CDS 25.0%
!! TCTGTATTTTCAACAAAAAG+AGG + Chr7:79272064-79272083 None:intergenic 25.0%
!! TTTTAGACTGTACATAATGA+TGG + Chr7:79272763-79272782 None:intergenic 25.0%
!!! AAAGACATTGTTTTGCTTAA+TGG + Chr7:79274636-79274655 None:intergenic 25.0%
AAAAACATGTGATGTGAATG+AGG - Chr7:79274526-79274545 MsG0780040567.01.T01:CDS 30.0%
AAATGGACAAATGTGATGAA+GGG - Chr7:79272295-79272314 MsG0780040567.01.T01:intron 30.0%
AAGGAACTTGTAAAAGTAGA+TGG - Chr7:79271968-79271987 MsG0780040567.01.T01:three_prime_UTR 30.0%
AATTAGCAATCAAAAAGGGT+AGG + Chr7:79272627-79272646 None:intergenic 30.0%
AGAGCATATGATCACATTTA+TGG + Chr7:79272853-79272872 None:intergenic 30.0%
AGCCTCTCATGTAAAAAAAT+AGG + Chr7:79273614-79273633 None:intergenic 30.0%
AGTTAAGATAAGTAGTTACC+AGG + Chr7:79271683-79271702 None:intergenic 30.0%
ATAGAAATTTAGGTATGGGT+GGG - Chr7:79273807-79273826 MsG0780040567.01.T01:intron 30.0%
ATGTAACATGCATTATGTGA+GGG + Chr7:79274477-79274496 None:intergenic 30.0%
CATAATGATGGTATAGTACA+TGG + Chr7:79272751-79272770 None:intergenic 30.0%
CTACCTAATATTGAGAAACA+TGG - Chr7:79272809-79272828 MsG0780040567.01.T01:intron 30.0%
CTTCAAATAACAAATTGTCC+TGG + Chr7:79274750-79274769 None:intergenic 30.0%
GATATAATGTTCTTGATGTG+AGG - Chr7:79271990-79272009 MsG0780040567.01.T01:three_prime_UTR 30.0%
GCAAGAACACATAGAAATTT+AGG - Chr7:79273797-79273816 MsG0780040567.01.T01:intron 30.0%
GCCTCTCATGTAAAAAAATA+GGG + Chr7:79273613-79273632 None:intergenic 30.0%
GGAAAGAGATAATGTTAGTA+TGG - Chr7:79274558-79274577 MsG0780040567.01.T01:CDS 30.0%
GTGTAGGTACATTCTTATTA+AGG - Chr7:79272452-79272471 MsG0780040567.01.T01:CDS 30.0%
TAAACTCTTGATTGTTTGTC+AGG - Chr7:79272576-79272595 MsG0780040567.01.T01:intron 30.0%
TAATGTTAGTATGGCTATCA+TGG - Chr7:79274567-79274586 MsG0780040567.01.T01:CDS 30.0%
TAGTAAAAACTCACAATGCA+AGG - Chr7:79271855-79271874 MsG0780040567.01.T01:three_prime_UTR 30.0%
TATGTAACATGCATTATGTG+AGG + Chr7:79274478-79274497 None:intergenic 30.0%
TATTGTGATACTTGATACCT+TGG - Chr7:79272953-79272972 MsG0780040567.01.T01:intron 30.0%
TTATTGTGCTCAATGAACAT+AGG - Chr7:79273055-79273074 MsG0780040567.01.T01:intron 30.0%
TTCCCATGTTTCTCAATATT+AGG + Chr7:79272815-79272834 None:intergenic 30.0%
! AATTTTTCTGGGTTGTTCTT+TGG - Chr7:79272487-79272506 MsG0780040567.01.T01:intron 30.0%
! ACAATCAAGAGTTTAGTTTC+AGG + Chr7:79272571-79272590 None:intergenic 30.0%
! ACTGTGCACAATAATTTTTC+TGG - Chr7:79272475-79272494 MsG0780040567.01.T01:intron 30.0%
! ATAATAAGTGTCCTTTTGTG+AGG + Chr7:79273706-79273725 None:intergenic 30.0%
! ATGTTATGCATGCTACATTT+TGG + Chr7:79274059-79274078 None:intergenic 30.0%
! ATTTTTCTGGGTTGTTCTTT+GGG - Chr7:79272488-79272507 MsG0780040567.01.T01:intron 30.0%
! CTGTGCACAATAATTTTTCT+GGG - Chr7:79272476-79272495 MsG0780040567.01.T01:intron 30.0%
! TAATAAGTGTCCTTTTGTGA+GGG + Chr7:79273705-79273724 None:intergenic 30.0%
!!! ACCCTATTTTTTTACATGAG+AGG - Chr7:79273609-79273628 MsG0780040567.01.T01:intron 30.0%
!!! ATAGGATTTTTTGCTTCTTG+TGG + Chr7:79273922-79273941 None:intergenic 30.0%
!!! ATGAATCCATATTTTAGTCC+TGG + Chr7:79272384-79272403 None:intergenic 30.0%
!!! GAATTGGTTTATTTTTGTGC+TGG + Chr7:79273293-79273312 None:intergenic 30.0%
!!! TCATTGCATTGATTTTGTGT+AGG - Chr7:79272436-79272455 MsG0780040567.01.T01:CDS 30.0%
AAAGTTAAACACTACCACAG+TGG + Chr7:79274613-79274632 None:intergenic 35.0%
AAGTTAAACACTACCACAGT+GGG + Chr7:79274612-79274631 None:intergenic 35.0%
AATGTAGCATGCATAACATC+TGG - Chr7:79274060-79274079 MsG0780040567.01.T01:intron 35.0%
ACAAACACACATTCTCACAA+TGG - Chr7:79271636-79271655 MsG0780040567.01.T01:three_prime_UTR 35.0%
ACCCAAAAACTAAACACCTT+GGG - Chr7:79273728-79273747 MsG0780040567.01.T01:intron 35.0%
ACTCGTCTCTATTAGATTCT+TGG + Chr7:79272885-79272904 None:intergenic 35.0%
AGGAAAAATTTCAGCTGTGT+TGG - Chr7:79274259-79274278 MsG0780040567.01.T01:intron 35.0%
AGGGGAAAACAACTAATCAA+TGG + Chr7:79274458-79274477 None:intergenic 35.0%
AGTGTACTTAATGTCACAGA+TGG + Chr7:79273108-79273127 None:intergenic 35.0%
ATCACATTTGTCCATTTGGA+CGG + Chr7:79272292-79272311 None:intergenic 35.0%
ATGATACCGATAACCCAAAT+AGG - Chr7:79273419-79273438 MsG0780040567.01.T01:intron 35.0%
ATGTGAATGAGGTTATGGAA+TGG - Chr7:79274537-79274556 MsG0780040567.01.T01:CDS 35.0%
ATGTGATGTGAATGAGGTTA+TGG - Chr7:79274532-79274551 MsG0780040567.01.T01:CDS 35.0%
ATTCAAATGTCCCTACAGAA+TGG + Chr7:79274184-79274203 None:intergenic 35.0%
CAAATGGACAAATGTGATGA+AGG - Chr7:79272294-79272313 MsG0780040567.01.T01:intron 35.0%
CATAGAAATTTAGGTATGGG+TGG - Chr7:79273806-79273825 MsG0780040567.01.T01:intron 35.0%
CTTCATCACATTTGTCCATT+TGG + Chr7:79272296-79272315 None:intergenic 35.0%
GAAAATACAGACAATGATCC+TGG - Chr7:79272073-79272092 MsG0780040567.01.T01:CDS 35.0%
GAAACTGACATGATCTGAAT+TGG + Chr7:79273309-79273328 None:intergenic 35.0%
GGAAAAATTTCAGCTGTGTT+GGG - Chr7:79274260-79274279 MsG0780040567.01.T01:intron 35.0%
GTGTACTTAATGTCACAGAT+GGG + Chr7:79273107-79273126 None:intergenic 35.0%
TAAGATAAGTAGTTACCAGG+AGG + Chr7:79271680-79271699 None:intergenic 35.0%
TACCCAAAAACTAAACACCT+TGG - Chr7:79273727-79273746 MsG0780040567.01.T01:intron 35.0%
TAGCAGTATTACCAGAATGT+AGG - Chr7:79272913-79272932 MsG0780040567.01.T01:intron 35.0%
TATTACCAGAATGTAGGCAA+TGG - Chr7:79272919-79272938 MsG0780040567.01.T01:intron 35.0%
TCACAGATTGTACGAAATCA+GGG + Chr7:79272534-79272553 None:intergenic 35.0%
TCATGTGATTGAAATGTCAC+AGG + Chr7:79273653-79273672 None:intergenic 35.0%
TGTAACATGCATTATGTGAG+GGG + Chr7:79274476-79274495 None:intergenic 35.0%
TTAAGTCACATTTATCCCTC+CGG - Chr7:79272251-79272270 MsG0780040567.01.T01:CDS 35.0%
TTCAAACATAGTAAGTTGCC+AGG - Chr7:79274729-79274748 MsG0780040567.01.T01:intron 35.0%
TTCACAGATTGTACGAAATC+AGG + Chr7:79272535-79272554 None:intergenic 35.0%
! AATAAGTGTCCTTTTGTGAG+GGG + Chr7:79273704-79273723 None:intergenic 35.0%
! ACACAGCTGAAATTTTTCCT+TGG + Chr7:79274259-79274278 None:intergenic 35.0%
! ACATTTTTCCAGTTTCCTTC+TGG - Chr7:79274801-79274820 MsG0780040567.01.T01:intron 35.0%
! ACTGAATCACTGATTATCCA+AGG + Chr7:79272973-79272992 None:intergenic 35.0%
! GTTGTGTTTTCAGCAACTTA+GGG - Chr7:79271819-79271838 MsG0780040567.01.T01:three_prime_UTR 35.0%
! TTCTGTCCTATTTGGGTTAT+CGG + Chr7:79273428-79273447 None:intergenic 35.0%
!!! AACTTTTAGTCTTAGCCTGA+AGG + Chr7:79274435-79274454 None:intergenic 35.0%
!!! ACTTTTAGTCTTAGCCTGAA+GGG + Chr7:79274434-79274453 None:intergenic 35.0%
AACCAAACCAAAAGCAGAGT+CGG + Chr7:79272676-79272695 None:intergenic 40.0%
ATTTCAATGACCCGTCCAAA+TGG - Chr7:79272278-79272297 MsG0780040567.01.T01:CDS 40.0%
ATTTCATCCCTACAACTTCC+AGG - Chr7:79272357-79272376 MsG0780040567.01.T01:intron 40.0%
CCTTCTGGTAGTACAGAAAA+AGG - Chr7:79274816-79274835 MsG0780040567.01.T01:CDS 40.0%
CGGGATCTTCATGAAAGTTT+GGG + Chr7:79272656-79272675 None:intergenic 40.0%
CGGTATCATTCTCGGATATT+GGG + Chr7:79273408-79273427 None:intergenic 40.0%
CTCTTGATTGTTTGTCAGGA+AGG - Chr7:79272580-79272599 MsG0780040567.01.T01:intron 40.0%
GATTGTACGAAATCAGGGTT+TGG + Chr7:79272529-79272548 None:intergenic 40.0%
GCAAATAAGTTAGAGGATGC+TGG - Chr7:79274030-79274049 MsG0780040567.01.T01:intron 40.0%
GCTCAATGAACATAGGAAGA+TGG - Chr7:79273062-79273081 MsG0780040567.01.T01:intron 40.0%
GGAGGGATAAATGTGACTTA+AGG + Chr7:79272252-79272271 None:intergenic 40.0%
GGTAGTACAGAAAAAGGAAG+AGG - Chr7:79274822-79274841 MsG0780040567.01.T01:exon 40.0%
GTAGGGACATTTGAATCTGT+TGG - Chr7:79274188-79274207 MsG0780040567.01.T01:intron 40.0%
GTTGCGTACAATACACCAAA+TGG + Chr7:79273586-79273605 None:intergenic 40.0%
TAAGTCACATTTATCCCTCC+GGG - Chr7:79272252-79272271 MsG0780040567.01.T01:CDS 40.0%
TACAGACAATGATCCTGGTA+TGG - Chr7:79272078-79272097 MsG0780040567.01.T01:CDS 40.0%
TAGCATTCTCTCACACTAGT+CGG + Chr7:79272997-79273016 None:intergenic 40.0%
TCACATTTGTCCATTTGGAC+GGG + Chr7:79272291-79272310 None:intergenic 40.0%
TCGGGATCTTCATGAAAGTT+TGG + Chr7:79272657-79272676 None:intergenic 40.0%
TCGGTATCATTCTCGGATAT+TGG + Chr7:79273409-79273428 None:intergenic 40.0%
TGCAGCAGCAAATAAGTTAG+AGG - Chr7:79274023-79274042 MsG0780040567.01.T01:intron 40.0%
TGGGTTATCGGTATCATTCT+CGG + Chr7:79273416-79273435 None:intergenic 40.0%
TTGTTTGTCAGGAAGGATTG+AGG - Chr7:79272587-79272606 MsG0780040567.01.T01:intron 40.0%
! ATAAGTGTCCTTTTGTGAGG+GGG + Chr7:79273703-79273722 None:intergenic 40.0%
! CCTTTTTCTGTACTACCAGA+AGG + Chr7:79274819-79274838 None:intergenic 40.0%
! GGTTGTGTTTTCAGCAACTT+AGG - Chr7:79271818-79271837 MsG0780040567.01.T01:three_prime_UTR 40.0%
! TGTAACAGCTGATGATGCTA+AGG - Chr7:79271949-79271968 MsG0780040567.01.T01:three_prime_UTR 40.0%
!! ATTTGAATCTGTTGGCTCGA+CGG - Chr7:79274196-79274215 MsG0780040567.01.T01:intron 40.0%
!! TCTTTGGGATACCATTCACT+AGG - Chr7:79272503-79272522 MsG0780040567.01.T01:intron 40.0%
!!! GCCCAAGGTGTTTAGTTTTT+GGG + Chr7:79273732-79273751 None:intergenic 40.0%
AAAGATCCTGAAAGCCTTCG+CGG - Chr7:79273163-79273182 MsG0780040567.01.T01:intron 45.0%
AACCTCCAATCACAACCAGA+GGG - Chr7:79273486-79273505 MsG0780040567.01.T01:intron 45.0%
ACACACATTCTCACAATGGC+AGG - Chr7:79271640-79271659 MsG0780040567.01.T01:three_prime_UTR 45.0%
ACCAAACCAAAAGCAGAGTC+GGG + Chr7:79272675-79272694 None:intergenic 45.0%
ACGGGTCATTGAAATTGTCC+CGG + Chr7:79272273-79272292 None:intergenic 45.0%
AGTGTGAGAGAATGCTACCA+CGG - Chr7:79273000-79273019 MsG0780040567.01.T01:intron 45.0%
ATCAGCTTCTCTGCTTGATC+AGG + Chr7:79274402-79274421 None:intergenic 45.0%
ATTCTCGGATATTGGGCGTA+GGG + Chr7:79273401-79273420 None:intergenic 45.0%
CAACTTAGGGAGATGTTGGT+TGG - Chr7:79271832-79271851 MsG0780040567.01.T01:three_prime_UTR 45.0%
CACACATTCTCACAATGGCA+GGG - Chr7:79271641-79271660 MsG0780040567.01.T01:three_prime_UTR 45.0%
CAGAATGTAGGCAATGGATG+AGG - Chr7:79272925-79272944 MsG0780040567.01.T01:intron 45.0%
CCAGGACCAGGACTAAAATA+TGG - Chr7:79272375-79272394 MsG0780040567.01.T01:intron 45.0%
CTAGATTGTCTATCCCACTG+TGG - Chr7:79274596-79274615 MsG0780040567.01.T01:CDS 45.0%
CTCATCCATTGCCTACATTC+TGG + Chr7:79272927-79272946 None:intergenic 45.0%
CTCTGCTTGATCAGGAAAGA+AGG + Chr7:79274394-79274413 None:intergenic 45.0%
CTGTACTACCAGAAGGAAAC+TGG + Chr7:79274812-79274831 None:intergenic 45.0%
GCGTAGGGGTTTCATGTAAT+AGG + Chr7:79273386-79273405 None:intergenic 45.0%
GCTGGTATCATTTCTGCAGT+TGG + Chr7:79273275-79273294 None:intergenic 45.0%
GGAAGGAGAAATTCCATACC+AGG + Chr7:79272094-79272113 None:intergenic 45.0%
GGACTTCAAACTGTGAAACC+AGG - Chr7:79274081-79274100 MsG0780040567.01.T01:intron 45.0%
GTCATTGAAATTGTCCCGGA+GGG + Chr7:79272269-79272288 None:intergenic 45.0%
GTGGAGGTTCTGTCCTATTT+GGG + Chr7:79273435-79273454 None:intergenic 45.0%
GTTGTGATTGGAGGTTACCT+CGG + Chr7:79273482-79273501 None:intergenic 45.0%
TAACCTCCAATCACAACCAG+AGG - Chr7:79273485-79273504 MsG0780040567.01.T01:intron 45.0%
TATCCTACCACCAAGAAGTC+AGG + Chr7:79273143-79273162 None:intergenic 45.0%
TCAGCAACTTAGGGAGATGT+TGG - Chr7:79271828-79271847 MsG0780040567.01.T01:three_prime_UTR 45.0%
TGTGGAGGTTCTGTCCTATT+TGG + Chr7:79273436-79273455 None:intergenic 45.0%
TTCATCCCTCTGGTTGTGAT+TGG + Chr7:79273494-79273513 None:intergenic 45.0%
! CAAGAAGTCAGGTACTGCAT+CGG + Chr7:79273132-79273151 None:intergenic 45.0%
! CATTGAGATACTAGCTTCCC+TGG + Chr7:79271887-79271906 None:intergenic 45.0%
!!! CCATATTTTAGTCCTGGTCC+TGG + Chr7:79272378-79272397 None:intergenic 45.0%
!!! GGCCCAAGGTGTTTAGTTTT+TGG + Chr7:79273733-79273752 None:intergenic 45.0%
AACACCTTGGGCCTTGATCT+TGG - Chr7:79273740-79273759 MsG0780040567.01.T01:intron 50.0%
ACAATTGTACCGTTGCGCCA+AGG - Chr7:79273675-79273694 MsG0780040567.01.T01:intron 50.0%
ACAGAACCTCCACAATGACG+AGG - Chr7:79273442-79273461 MsG0780040567.01.T01:intron 50.0%
AGCAGAGAAGCTGATCCAAC+TGG - Chr7:79274407-79274426 MsG0780040567.01.T01:CDS 50.0%
ATCCCTCTGGTTGTGATTGG+AGG + Chr7:79273491-79273510 None:intergenic 50.0%
ATTAAAGCTCCCGCATACGC+AGG - Chr7:79273542-79273561 MsG0780040567.01.T01:intron 50.0%
CAAATGGTGAGACCCCTTTC+CGG + Chr7:79273570-79273589 None:intergenic 50.0%
CATTCTCGGATATTGGGCGT+AGG + Chr7:79273402-79273421 None:intergenic 50.0%
CGATGCAGTACCTGACTTCT+TGG - Chr7:79273130-79273149 MsG0780040567.01.T01:intron 50.0%
GAATGCTGGCAAAGCTGGTT+TGG - Chr7:79274226-79274245 MsG0780040567.01.T01:intron 50.0%
GCAGCAGACCTTGACAAAGA+AGG + Chr7:79274006-79274025 None:intergenic 50.0%
GGTCATTGAAATTGTCCCGG+AGG + Chr7:79272270-79272289 None:intergenic 50.0%
TCAGGGTTTGGCCTAGTGAA+TGG + Chr7:79272517-79272536 None:intergenic 50.0%
TCCTGGTCCTGGAAGTTGTA+GGG + Chr7:79272367-79272386 None:intergenic 50.0%
TGAGAGAATGCTACCACGGA+GGG - Chr7:79273004-79273023 MsG0780040567.01.T01:intron 50.0%
TGCAGTACCTGACTTCTTGG+TGG - Chr7:79273133-79273152 MsG0780040567.01.T01:intron 50.0%
TTAAAGCTCCCGCATACGCA+GGG - Chr7:79273543-79273562 MsG0780040567.01.T01:intron 50.0%
TTCTCGGATATTGGGCGTAG+GGG + Chr7:79273400-79273419 None:intergenic 50.0%
TTGCAGAATGCTGGCAAAGC+TGG - Chr7:79274221-79274240 MsG0780040567.01.T01:intron 50.0%
! ACAATGCAAGGAGCATGCCA+GGG - Chr7:79271867-79271886 MsG0780040567.01.T01:three_prime_UTR 50.0%
! AGCACGTTGTTTCATCCCTC+TGG + Chr7:79273504-79273523 None:intergenic 50.0%
! GAAGATCCCGACTCTGCTTT+TGG - Chr7:79272666-79272685 MsG0780040567.01.T01:intron 50.0%
! GTACCTGACTTCTTGGTGGT+AGG - Chr7:79273137-79273156 MsG0780040567.01.T01:intron 50.0%
!! GCTGGTTTGGTGCAAATCCA+AGG - Chr7:79274239-79274258 MsG0780040567.01.T01:intron 50.0%
!! TCCCGACTCTGCTTTTGGTT+TGG - Chr7:79272671-79272690 MsG0780040567.01.T01:intron 50.0%
AAAGCCTTCGCGGTGGATGA+TGG - Chr7:79273173-79273192 MsG0780040567.01.T01:intron 55.0%
AGGACGTGGGAAGTTATCCG+AGG - Chr7:79273462-79273481 MsG0780040567.01.T01:intron 55.0%
ATCTCCATCATCCACCGCGA+AGG + Chr7:79273180-79273199 None:intergenic 55.0%
CGGAAAGGGGTCTCACCATT+TGG - Chr7:79273568-79273587 MsG0780040567.01.T01:intron 55.0%
CTCCACAATGACGAGGACGT+GGG - Chr7:79273449-79273468 MsG0780040567.01.T01:intron 55.0%
CTGATCCAACTGGTCCCTTC+AGG - Chr7:79274417-79274436 MsG0780040567.01.T01:CDS 55.0%
CTTAGCCTGAAGGGACCAGT+TGG + Chr7:79274425-79274444 None:intergenic 55.0%
GGACTGCTTTCTCAACCTCC+TGG - Chr7:79271662-79271681 MsG0780040567.01.T01:three_prime_UTR 55.0%
GTCCTGGTCCTGGAAGTTGT+AGG + Chr7:79272368-79272387 None:intergenic 55.0%
GTGAGAGAATGCTACCACGG+AGG - Chr7:79273003-79273022 MsG0780040567.01.T01:intron 55.0%
TCCCTACAACTTCCAGGACC+AGG - Chr7:79272363-79272382 MsG0780040567.01.T01:intron 55.0%
TCGACGGAGTTGCAGAATGC+TGG - Chr7:79274212-79274231 MsG0780040567.01.T01:intron 55.0%
TTCCCACGTCCTCGTCATTG+TGG + Chr7:79273454-79273473 None:intergenic 55.0%
! CACAATGCAAGGAGCATGCC+AGG - Chr7:79271866-79271885 MsG0780040567.01.T01:three_prime_UTR 55.0%
ATCTTGGCACGTCGCTGGCA+AGG - Chr7:79273756-79273775 MsG0780040567.01.T01:intron 60.0%
CATACGCAGGGTCCGGAAAG+GGG - Chr7:79273555-79273574 MsG0780040567.01.T01:intron 60.0%
CATCCACCGCGAAGGCTTTC+AGG + Chr7:79273172-79273191 None:intergenic 60.0%
CCAAGGCTCCCCCTCACAAA+AGG - Chr7:79273692-79273711 MsG0780040567.01.T01:intron 60.0%
CCACGTCCTCGTCATTGTGG+AGG + Chr7:79273451-79273470 None:intergenic 60.0%
CCAGCGACGTGCCAAGATCA+AGG + Chr7:79273754-79273773 None:intergenic 60.0%
CCTCCACAATGACGAGGACG+TGG - Chr7:79273448-79273467 MsG0780040567.01.T01:intron 60.0%
CCTTGATCTTGGCACGTCGC+TGG - Chr7:79273751-79273770 MsG0780040567.01.T01:intron 60.0%
CGTGCCAAGATCAAGGCCCA+AGG + Chr7:79273747-79273766 None:intergenic 60.0%
CTTTCCGGACCCTGCGTATG+CGG + Chr7:79273555-79273574 None:intergenic 60.0%
GATCCTGAAAGCCTTCGCGG+TGG - Chr7:79273166-79273185 MsG0780040567.01.T01:intron 60.0%
GCATACGCAGGGTCCGGAAA+GGG - Chr7:79273554-79273573 MsG0780040567.01.T01:intron 60.0%
GCTACCACGGAGGGCTACTT+TGG - Chr7:79273013-79273032 MsG0780040567.01.T01:intron 60.0%
TTTCCGGACCCTGCGTATGC+GGG + Chr7:79273554-79273573 None:intergenic 60.0%
! CCTTTTGTGAGGGGGAGCCT+TGG + Chr7:79273695-79273714 None:intergenic 60.0%
! GGAGGGCTACTTTGGCTGCA+TGG - Chr7:79273021-79273040 MsG0780040567.01.T01:intron 60.0%
CGCATACGCAGGGTCCGGAA+AGG - Chr7:79273553-79273572 MsG0780040567.01.T01:intron 65.0%
GCAGCCAAAGTAGCCCTCCG+TGG + Chr7:79273020-79273039 None:intergenic 65.0%
GAGGGGGAGCCTTGGCGCAA+CGG + Chr7:79273687-79273706 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr7:79273548-79273567 MsG0780040567.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 79271629 79274864 79271629 ID=MsG0780040567.01;Name=MsG0780040567.01
Chr7 mRNA 79271629 79274864 79271629 ID=MsG0780040567.01.T01;Parent=MsG0780040567.01;Name=MsG0780040567.01.T01;_AED=0.33;_eAED=0.33;_QI=26|1|1|1|0.8|0.66|6|421|234
Chr7 exon 79271629 79272120 79271629 ID=MsG0780040567.01.T01:exon:16517;Parent=MsG0780040567.01.T01
Chr7 exon 79272197 79272301 79272197 ID=MsG0780040567.01.T01:exon:16516;Parent=MsG0780040567.01.T01
Chr7 exon 79272391 79272476 79272391 ID=MsG0780040567.01.T01:exon:16515;Parent=MsG0780040567.01.T01
Chr7 exon 79273885 79274035 79273885 ID=MsG0780040567.01.T01:exon:16514;Parent=MsG0780040567.01.T01
Chr7 exon 79274399 79274661 79274399 ID=MsG0780040567.01.T01:exon:16513;Parent=MsG0780040567.01.T01
Chr7 exon 79274810 79274864 79274810 ID=MsG0780040567.01.T01:exon:16512;Parent=MsG0780040567.01.T01
Chr7 five_prime_UTR 79274839 79274864 79274839 ID=MsG0780040567.01.T01:five_prime_utr;Parent=MsG0780040567.01.T01
Chr7 CDS 79274810 79274838 79274810 ID=MsG0780040567.01.T01:cds;Parent=MsG0780040567.01.T01
Chr7 CDS 79274399 79274661 79274399 ID=MsG0780040567.01.T01:cds;Parent=MsG0780040567.01.T01
Chr7 CDS 79273885 79274035 79273885 ID=MsG0780040567.01.T01:cds;Parent=MsG0780040567.01.T01
Chr7 CDS 79272391 79272476 79272391 ID=MsG0780040567.01.T01:cds;Parent=MsG0780040567.01.T01
Chr7 CDS 79272197 79272301 79272197 ID=MsG0780040567.01.T01:cds;Parent=MsG0780040567.01.T01
Chr7 CDS 79272050 79272120 79272050 ID=MsG0780040567.01.T01:cds;Parent=MsG0780040567.01.T01
Chr7 three_prime_UTR 79271629 79272049 79271629 ID=MsG0780040567.01.T01:three_prime_utr;Parent=MsG0780040567.01.T01
Gene Sequence

>MsG0780040567.01.T01

ATGGCAGGGACTGCTTTCTCAACCTCCTGCAACTTAGGGAGATGTTGGTTGGTAGTAAAAACTCACAATGCAAGGAGCATGCCAGGGAAGCTAGTATCTCAATGTAAAATGAGAAGGAAGTTTACAATAAAAGCAGAAATTAAGTTTGTAACAGCTGATGATGCTAAGGAACTTGTAAAAGTAGATGGATATAATGTTCTTGATGTGAGGGACAAATCTCAATATGAAAGAGCACACATTAAAACATGTTATCATGTTCCTCTTTTTGTTGAAAATACAGACAATGATCCTGGTACATTCTTATTAAGGACTGTGCACAATAATTTTTCTGGGTTGTTCTTTGGGATACCATTCACTAGGCCAAACCCTGATTTCGTACAATCTGTGAAGAGTCAAATACAGCCTGAAACTAAACTCTTGATTGTTTGTCAGGAAGGATTGAGGTCTGCTGCAGCAGCAAATAAGTTAGAGGATGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAAACTGTGAAACCAGGGACATTTGAATCTGTTGGCTCGACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATCCAAGGAAAAATTTCAGCTGTGTTGGGAACTGTTCTTATTTGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGATCCAACTGGTCCCTTCAGGCTAA

Protein sequence

>MsG0780040567.01.T01

MAGTAFSTSCNLGRCWLVVKTHNARSMPGKLVSQCKMRRKFTIKAEIKFVTADDAKELVKVDGYNVLDVRDKSQYERAHIKTCYHVPLFVENTDNDPGTFLLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSAAAANKLEDAGFQNVACITSGLQTVKPGTFESVGSTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPSG*