AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021315.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021315.01.T01 MTR_4g071445 56.393 305 68 5 15 258 248 548 8.30e-93 284
MsG0480021315.01.T01 MTR_4g071420 49.839 311 91 5 8 257 244 550 6.86e-81 253
MsG0480021315.01.T01 MTR_4g071465 67.179 195 57 3 67 258 353 543 4.04e-74 235
MsG0480021315.01.T01 MTR_4g071465 94.000 50 3 0 15 64 243 292 4.60e-23 98.2
MsG0480021315.01.T01 MTR_4g071370 48.534 307 89 8 15 258 250 550 2.53e-73 233
MsG0480021315.01.T01 MTR_4g071390 58.046 174 61 4 76 245 358 523 1.97e-53 181
MsG0480021315.01.T01 MTR_4g071390 84.000 50 8 0 15 64 237 286 1.65e-19 87.8
MsG0480021315.01.T01 MTR_4g071370 48.039 204 46 3 15 158 250 453 1.87e-46 161
MsG0480021315.01.T01 MTR_4g071370 48.485 198 42 3 15 152 250 447 5.55e-46 160
MsG0480021315.01.T01 MTR_4g071420 44.444 162 30 3 8 109 244 405 5.43e-31 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021315.01.T01 AT2G21340 38.835 309 116 8 15 258 256 556 6.84e-54 182
MsG0480021315.01.T01 AT2G21340 38.835 309 116 8 15 258 259 559 8.15e-54 182
MsG0480021315.01.T01 AT4G39030 43.939 198 97 5 67 257 352 542 1.20e-35 133
MsG0480021315.01.T01 AT4G39030 68.421 57 18 0 8 64 235 291 1.77e-17 82.0

Find 100 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTCATTCTTGGAATT+TGG 0.106484 4:-56641013 MsG0480021315.01.T01:three_prime_UTR
AATTGAAGACTGCATAATTT+TGG 0.181236 4:-56641321 MsG0480021315.01.T01:exon
AGCTGTATTCGGGTTGCTTT+TGG 0.197977 4:-56642992 MsG0480021315.01.T01:CDS
AGCAAATATGTTCTCATTCT+TGG 0.200815 4:-56641020 MsG0480021315.01.T01:three_prime_UTR
TTTGAATGGTCTAGTATTAT+TGG 0.209178 4:-56641655 MsG0480021315.01.T01:CDS
CCCTCCAGGCCGACTGTTGC+AGG 0.218536 4:+56642753 None:intergenic
CTAACTATTGGAGCTGTATT+CGG 0.232506 4:-56643003 MsG0480021315.01.T01:CDS
GCCACTGGGGTATAGTTATT+TGG 0.233210 4:-56641091 MsG0480021315.01.T01:three_prime_UTR
TGCTCTCCTCTATTTCTAAA+TGG 0.238561 4:+56641039 None:intergenic
GCTGCTGCCAGTATTATAAA+TGG 0.247426 4:-56644335 MsG0480021315.01.T01:CDS
GACATTAATTATATTCTTAT+CGG 0.251619 4:+56640909 None:intergenic
CTTGGAATTTGGGTTCAAAA+TGG 0.256390 4:-56641002 MsG0480021315.01.T01:three_prime_UTR
CTAAGGTCTCTTCTAACTAT+TGG 0.258425 4:-56643015 MsG0480021315.01.T01:CDS
CTGTGCAGATATTTAAACTA+TGG 0.264751 4:-56644296 MsG0480021315.01.T01:CDS
TCGGAAACTGTGCGGGGAAA+TGG 0.271411 4:-56641172 MsG0480021315.01.T01:three_prime_UTR
TGTTCTCATTCTTGGAATTT+GGG 0.281954 4:-56641012 MsG0480021315.01.T01:three_prime_UTR
ACCAATTCCATTTATAATAC+TGG 0.285900 4:+56644328 None:intergenic
TCTCATTTAATTCATATTCT+TGG 0.296759 4:-56644419 MsG0480021315.01.T01:CDS
TGTTAAGCATGTTACAAAAT+AGG 0.300501 4:-56641242 MsG0480021315.01.T01:three_prime_UTR
GCATAAATGATTGGGCAGTT+TGG 0.309238 4:+56643332 None:intergenic
TTGGGGACCCTTGAAGGCTT+TGG 0.310354 4:-56644357 MsG0480021315.01.T01:CDS
CGGAAACTGTGCGGGGAAAT+GGG 0.313766 4:-56641171 MsG0480021315.01.T01:three_prime_UTR
CATAAATGATTGGGCAGTTT+GGG 0.318301 4:+56643333 None:intergenic
ATGGGATTGCTGGGGCTGCA+TGG 0.341748 4:-56644277 MsG0480021315.01.T01:CDS
GTCTTGGTATGAAAGATTCT+TGG 0.344370 4:-56644376 MsG0480021315.01.T01:CDS
TATTTAAACTATGGGATTGC+TGG 0.346581 4:-56644287 MsG0480021315.01.T01:CDS
TAACTATTGGAGCTGTATTC+GGG 0.354893 4:-56643002 MsG0480021315.01.T01:CDS
GTGATCAAGTGTGGTGCCAC+TGG 0.372752 4:-56641106 MsG0480021315.01.T01:three_prime_UTR
CAGATCCTATCCAGCAGATA+TGG 0.375163 4:-56641551 MsG0480021315.01.T01:CDS
ATAAGTTTGTTCGGCATACT+TGG 0.376658 4:+56644240 None:intergenic
GACAGGCTCGGTCGCTTCTA+AGG 0.385164 4:-56643032 MsG0480021315.01.T01:intron
TGGGTTCAAAATGGCTTGTA+AGG 0.388067 4:-56640993 MsG0480021315.01.T01:three_prime_UTR
TGGGATTGCTGGGGCTGCAT+GGG 0.388672 4:-56644276 MsG0480021315.01.T01:CDS
CGGCCTGGAGGGAACATTGC+TGG 0.395766 4:-56642742 MsG0480021315.01.T01:intron
TCTTGGTATGAAAGATTCTT+GGG 0.396058 4:-56644375 MsG0480021315.01.T01:CDS
TTTCACTTGCTGGATTTCAA+TGG 0.400259 4:-56641511 MsG0480021315.01.T01:CDS
GGCAGCAGCCAAAGCCTTCA+AGG 0.419588 4:+56644349 None:intergenic
TCAACTCAGGCATAAATGAT+TGG 0.421244 4:+56643323 None:intergenic
TTTATAAGTTTGTCAATGAC+TGG 0.429492 4:-56641687 MsG0480021315.01.T01:CDS
TTCACTTGCTGGATTTCAAT+GGG 0.432604 4:-56641510 MsG0480021315.01.T01:intron
GTATGGAGTAAATCGGAGTT+TGG 0.433384 4:-56643299 MsG0480021315.01.T01:CDS
GCCAGTATTATAAATGGAAT+TGG 0.442168 4:-56644329 MsG0480021315.01.T01:CDS
TGGGGCTGCATGGGCTACAT+TGG 0.444208 4:-56644267 MsG0480021315.01.T01:CDS
AGATTCTTGGGGACCCTTGA+AGG 0.447575 4:-56644363 MsG0480021315.01.T01:CDS
GCTTTGCCATTTAGAAATAG+AGG 0.450678 4:-56641045 MsG0480021315.01.T01:three_prime_UTR
TGTGCAGATATTTAAACTAT+GGG 0.453943 4:-56644295 MsG0480021315.01.T01:CDS
CACATTCTTTCACGCAGTCT+TGG 0.465242 4:-56644392 MsG0480021315.01.T01:CDS
CACACCTGCAACAGTCGGCC+TGG 0.466186 4:-56642757 MsG0480021315.01.T01:CDS
GTAATGCATATAAGTTTGTT+CGG 0.466312 4:+56644231 None:intergenic
TGTCGATACAATTCAGTGCT+TGG 0.467061 4:-56641217 MsG0480021315.01.T01:three_prime_UTR
TTTATGCCTGAGTTGATGTA+TGG 0.474513 4:-56643316 MsG0480021315.01.T01:CDS
AAGATATACGTTCAAGGCGG+TGG 0.474818 4:+56641130 None:intergenic
GCCTTGCAAACCATATCTGC+TGG 0.476879 4:+56641541 None:intergenic
TTTGCTCATGCAGGCTGGGC+GGG 0.477622 4:-56641718 MsG0480021315.01.T01:intron
AAATGCCATTGGGAGATAGA+AGG 0.478517 4:+56641380 None:intergenic
TCCTGGATGACCATTTGATC+AGG 0.486992 4:+56642922 None:intergenic
ACCTGATCAAATGGTCATCC+AGG 0.487046 4:-56642923 MsG0480021315.01.T01:CDS
AGTTGTATCGGAAACTGTGC+GGG 0.487415 4:-56641179 MsG0480021315.01.T01:three_prime_UTR
ATTTAAACTATGGGATTGCT+GGG 0.490545 4:-56644286 MsG0480021315.01.T01:CDS
AGTTGATGTATGGAGTAAAT+CGG 0.492680 4:-56643306 MsG0480021315.01.T01:CDS
TTGTTGTAACATCTGTTACT+TGG 0.499431 4:-56642966 MsG0480021315.01.T01:CDS
CAACTCAGGCATAAATGATT+GGG 0.499704 4:+56643324 None:intergenic
CTGCAGGTGCTGAGTTGTAT+CGG 0.500020 4:-56641191 MsG0480021315.01.T01:three_prime_UTR
TGATCAAGTGTGGTGCCACT+GGG 0.500320 4:-56641105 MsG0480021315.01.T01:three_prime_UTR
TTCCGAGTATAAAATGCCAT+TGG 0.504973 4:+56641369 None:intergenic
TCCGAGTATAAAATGCCATT+GGG 0.511889 4:+56641370 None:intergenic
TTCAAAATGGCTTGTAAGGT+AGG 0.514855 4:-56640989 MsG0480021315.01.T01:three_prime_UTR
GGAAACTGTGCGGGGAAATG+GGG 0.518399 4:-56641170 MsG0480021315.01.T01:three_prime_UTR
GCAAACCATATCTGCTGGAT+AGG 0.523619 4:+56641546 None:intergenic
CCTGCAACAGTCGGCCTGGA+GGG 0.530670 4:-56642753 MsG0480021315.01.T01:CDS
TGGGAGATAGAAGGCGCAGA+AGG 0.531589 4:+56641389 None:intergenic
ATCACAAAGATATACGTTCA+AGG 0.539081 4:+56641124 None:intergenic
GATTGGGCAGTTTGGGAGAG+AGG 0.541089 4:+56643340 None:intergenic
TAAGTTTGTTCGGCATACTT+GGG 0.542463 4:+56644241 None:intergenic
AAGCCACCATAAAAGTAGAA+AGG 0.550147 4:+56641064 None:intergenic
TCCAGCAGATATGGTTTGCA+AGG 0.560688 4:-56641542 MsG0480021315.01.T01:CDS
ATTCAGTGCTTGGAAACTGC+AGG 0.566478 4:-56641207 MsG0480021315.01.T01:three_prime_UTR
ATACCAGCAATGTTCCCTCC+AGG 0.568305 4:+56642739 None:intergenic
CAAGACTGCGTGAAAGAATG+TGG 0.571249 4:+56644393 None:intergenic
GAAACTGTGCGGGGAAATGG+GGG 0.573752 4:-56641169 MsG0480021315.01.T01:three_prime_UTR
GCAGCAGCCAAAGCCTTCAA+GGG 0.575285 4:+56644350 None:intergenic
GATATGGTTTGCAAGGCTGT+TGG 0.577198 4:-56641535 MsG0480021315.01.T01:CDS
CTGCGCCTTCTATCTCCCAA+TGG 0.586913 4:-56641385 MsG0480021315.01.T01:CDS
ACCTGCAACAGTCGGCCTGG+AGG 0.603468 4:-56642754 MsG0480021315.01.T01:CDS
ATTTGCTCATGCAGGCTGGG+CGG 0.603806 4:-56641719 MsG0480021315.01.T01:intron
GGGAGATAGAAGGCGCAGAA+GGG 0.619859 4:+56641390 None:intergenic
AGTAAATCGGAGTTTGGCAA+AGG 0.624488 4:-56643293 MsG0480021315.01.T01:intron
TACATGTTATGCGCAATATG+TGG 0.626684 4:-56643367 MsG0480021315.01.T01:CDS
TTTACTCCATACATCAACTC+AGG 0.632825 4:+56643310 None:intergenic
TATATCTTTGTGATCAAGTG+TGG 0.669008 4:-56641115 MsG0480021315.01.T01:three_prime_UTR
TTTAAACTATGGGATTGCTG+GGG 0.669847 4:-56644285 MsG0480021315.01.T01:CDS
CTTGGTATGAAAGATTCTTG+GGG 0.676112 4:-56644374 MsG0480021315.01.T01:CDS
CTGGTCACACCTGCAACAGT+CGG 0.690613 4:-56642762 MsG0480021315.01.T01:CDS
TGATCAAATGGTCATCCAGG+AGG 0.702782 4:-56642920 MsG0480021315.01.T01:intron
GAGTTGTATCGGAAACTGTG+CGG 0.703127 4:-56641180 MsG0480021315.01.T01:three_prime_UTR
ACCAAATAACTATACCCCAG+TGG 0.721142 4:+56641090 None:intergenic
GTTGTATCGGAAACTGTGCG+GGG 0.735175 4:-56641178 MsG0480021315.01.T01:three_prime_UTR
GATCAAGTGTGGTGCCACTG+GGG 0.737199 4:-56641104 MsG0480021315.01.T01:three_prime_UTR
TGGCTTGTAAGGTAGGAATG+TGG 0.773808 4:-56640982 MsG0480021315.01.T01:three_prime_UTR
ACAAAGATATACGTTCAAGG+CGG 0.792492 4:+56641127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGATATAAAATCACTA+TGG + Chr4:56642794-56642813 None:intergenic 15.0%
!! TTAATTATTGGTATCATATA+TGG - Chr4:56641480-56641499 MsG0480021315.01.T01:intron 15.0%
!!! TATTTTAGTACATTGAAAAT+AGG + Chr4:56641511-56641530 None:intergenic 15.0%
!! AAAACGATACTATATATATG+AGG + Chr4:56642112-56642131 None:intergenic 20.0%
!! AATTAAATTGTCATGAATGT+TGG + Chr4:56643557-56643576 None:intergenic 20.0%
!! ACATTGTAAACAAGTAATTA+GGG - Chr4:56641126-56641145 MsG0480021315.01.T01:three_prime_UTR 20.0%
!! AGCACATAATATGTAAATAT+TGG - Chr4:56641153-56641172 MsG0480021315.01.T01:three_prime_UTR 20.0%
!! ATAATGAATGGAAAAGAATA+TGG - Chr4:56643114-56643133 MsG0480021315.01.T01:intron 20.0%
!! ATTAAATTGTCATGAATGTT+GGG + Chr4:56643556-56643575 None:intergenic 20.0%
!! CACACATCATAATTAATTAT+TGG - Chr4:56641468-56641487 MsG0480021315.01.T01:intron 20.0%
!! GAACTTTCAGTTATATTTAA+AGG + Chr4:56641745-56641764 None:intergenic 20.0%
!! TACATTGTAAACAAGTAATT+AGG - Chr4:56641125-56641144 MsG0480021315.01.T01:three_prime_UTR 20.0%
!! TCTCATTTAATTCATATTCT+TGG - Chr4:56640917-56640936 MsG0480021315.01.T01:three_prime_UTR 20.0%
!! TGAATATACATAACAATGTA+TGG + Chr4:56642258-56642277 None:intergenic 20.0%
!! TTAAAATATGTTTGTGAGTT+TGG + Chr4:56641917-56641936 None:intergenic 20.0%
!! TTCAATTTGTCTATAATGAA+TGG - Chr4:56643102-56643121 MsG0480021315.01.T01:intron 20.0%
!! TTGTATTAAGCTTACTAATT+AGG - Chr4:56641363-56641382 MsG0480021315.01.T01:CDS 20.0%
!!! AGTTGATTTTCATTTTATAG+AGG - Chr4:56642151-56642170 MsG0480021315.01.T01:intron 20.0%
!!! ATATATTTTGCTACATCAAT+GGG - Chr4:56641796-56641815 MsG0480021315.01.T01:intron 20.0%
!!! CATTTTTATGCTAAAAATCT+AGG + Chr4:56642721-56642740 None:intergenic 20.0%
!!! TATATATTTTGCTACATCAA+TGG - Chr4:56641795-56641814 MsG0480021315.01.T01:intron 20.0%
!!! TGTTAACAACTTTATCTTTT+AGG + Chr4:56642955-56642974 None:intergenic 20.0%
!!! TTATTTTAGTGTTCTTATGT+TGG - Chr4:56642652-56642671 MsG0480021315.01.T01:intron 20.0%
!!! TTTAACTCAACTCTTATTTT+AGG - Chr4:56641932-56641951 MsG0480021315.01.T01:intron 20.0%
! AAGTACATATACATAAGAAG+CGG + Chr4:56643210-56643229 None:intergenic 25.0%
! AATGTACCATGAACTAAAAA+TGG + Chr4:56644045-56644064 None:intergenic 25.0%
! ACCAATTCCATTTATAATAC+TGG + Chr4:56641011-56641030 None:intergenic 25.0%
! ATCTACAATGTGAATTAGTA+AGG + Chr4:56642230-56642249 None:intergenic 25.0%
! ATTTGTGACATTGATGTTAA+AGG - Chr4:56641668-56641687 MsG0480021315.01.T01:CDS 25.0%
! CAAAACACGTTAAAACATTT+CGG + Chr4:56641234-56641253 None:intergenic 25.0%
! CATATTGTGTTTATTAGGTT+CGG - Chr4:56643913-56643932 MsG0480021315.01.T01:intron 25.0%
! GTTGAATTTACAGGAAATAA+TGG + Chr4:56643075-56643094 None:intergenic 25.0%
! TACTATATATATGAGGTTGA+AGG + Chr4:56642105-56642124 None:intergenic 25.0%
! TCTTACAAACTTAATCCTTT+AGG - Chr4:56643151-56643170 MsG0480021315.01.T01:intron 25.0%
! TGTGCAGATATTTAAACTAT+GGG - Chr4:56641041-56641060 MsG0480021315.01.T01:three_prime_UTR 25.0%
! TGTTAAGCATGTTACAAAAT+AGG - Chr4:56644094-56644113 MsG0480021315.01.T01:intron 25.0%
! TTAAATTGTCATGAATGTTG+GGG + Chr4:56643555-56643574 None:intergenic 25.0%
! TTTATAAGTTTGTCAATGAC+TGG - Chr4:56643649-56643668 MsG0480021315.01.T01:intron 25.0%
! TTTGAATGGTCTAGTATTAT+TGG - Chr4:56643681-56643700 MsG0480021315.01.T01:intron 25.0%
!! AATTGAAGACTGCATAATTT+TGG - Chr4:56644015-56644034 MsG0480021315.01.T01:intron 25.0%
!! GTAATGCATATAAGTTTGTT+CGG + Chr4:56641108-56641127 None:intergenic 25.0%
!!! AATGTTTTAACGTGTTTTGA+AGG - Chr4:56641235-56641254 MsG0480021315.01.T01:three_prime_UTR 25.0%
!!! ATCTTTCTTTTTGGTTTGAA+GGG - Chr4:56642177-56642196 MsG0480021315.01.T01:intron 25.0%
AAAAGAAGCCTTAATTCCAA+AGG + Chr4:56642488-56642507 None:intergenic 30.0%
AACATCAATGTCACAAATAC+AGG + Chr4:56641666-56641685 None:intergenic 30.0%
AACCAAACTGTTGAATTTAC+AGG + Chr4:56643084-56643103 None:intergenic 30.0%
AATCCTAATCTGTTTCACAT+AGG - Chr4:56642766-56642785 MsG0480021315.01.T01:CDS 30.0%
AGCAAATATGTTCTCATTCT+TGG - Chr4:56644316-56644335 MsG0480021315.01.T01:CDS 30.0%
AGGATTAAGTTTGTAAGAAG+TGG + Chr4:56643149-56643168 None:intergenic 30.0%
AGGGACATATTGTGTTTATT+AGG - Chr4:56643908-56643927 MsG0480021315.01.T01:intron 30.0%
ATCACAAAGATATACGTTCA+AGG + Chr4:56644215-56644234 None:intergenic 30.0%
ATGTTCTCATTCTTGGAATT+TGG - Chr4:56644323-56644342 MsG0480021315.01.T01:CDS 30.0%
ATTTAAACTATGGGATTGCT+GGG - Chr4:56641050-56641069 MsG0480021315.01.T01:three_prime_UTR 30.0%
CAGAGCTACTAAATAGTTAA+GGG + Chr4:56642910-56642929 None:intergenic 30.0%
CTACTAAATAGTTAAGGGTT+AGG + Chr4:56642905-56642924 None:intergenic 30.0%
CTGTGCAGATATTTAAACTA+TGG - Chr4:56641040-56641059 MsG0480021315.01.T01:three_prime_UTR 30.0%
GAAGTCTTTAAACATCCTAA+AGG + Chr4:56643169-56643188 None:intergenic 30.0%
GATAAAGTTGTTAACAAGAC+AGG - Chr4:56642959-56642978 MsG0480021315.01.T01:CDS 30.0%
GCCAGTATTATAAATGGAAT+TGG - Chr4:56641007-56641026 MsG0480021315.01.T01:three_prime_UTR 30.0%
GTCAAGATACTATAAACTCA+GGG + Chr4:56642287-56642306 None:intergenic 30.0%
TACATTGTCGTTACAACTAA+CGG + Chr4:56643315-56643334 None:intergenic 30.0%
TATATCTTTGTGATCAAGTG+TGG - Chr4:56644221-56644240 MsG0480021315.01.T01:CDS 30.0%
TATTTAAACTATGGGATTGC+TGG - Chr4:56641049-56641068 MsG0480021315.01.T01:three_prime_UTR 30.0%
TCATGTTCGATTGGAATATT+AGG - Chr4:56642622-56642641 MsG0480021315.01.T01:intron 30.0%
TCTTGGTATGAAAGATTCTT+GGG - Chr4:56640961-56640980 MsG0480021315.01.T01:three_prime_UTR 30.0%
TGAGTTTATAGTATCTTGAC+AGG - Chr4:56642287-56642306 MsG0480021315.01.T01:intron 30.0%
TGATCAGGTGTAAAAATGTA+GGG + Chr4:56642402-56642421 None:intergenic 30.0%
TGTAACGACAATGTAAGTAT+AGG - Chr4:56643320-56643339 MsG0480021315.01.T01:CDS 30.0%
TGTCAAGATACTATAAACTC+AGG + Chr4:56642288-56642307 None:intergenic 30.0%
TGTTCTCATTCTTGGAATTT+GGG - Chr4:56644324-56644343 MsG0480021315.01.T01:CDS 30.0%
TGTTTAAAGACTTCCTTACA+TGG - Chr4:56643175-56643194 MsG0480021315.01.T01:intron 30.0%
TTATGCTAAAAATCTAGGTC+AGG + Chr4:56642716-56642735 None:intergenic 30.0%
TTCCTGTAAATTCAACAGTT+TGG - Chr4:56643079-56643098 MsG0480021315.01.T01:intron 30.0%
TTGATCAGGTGTAAAAATGT+AGG + Chr4:56642403-56642422 None:intergenic 30.0%
TTGTTGTAACATCTGTTACT+TGG - Chr4:56642370-56642389 MsG0480021315.01.T01:intron 30.0%
TTTGGATTATAGAATCCGAA+CGG + Chr4:56641280-56641299 None:intergenic 30.0%
! AATATAGAAGCTTTAGCTCA+TGG + Chr4:56641389-56641408 None:intergenic 30.0%
! ACCTTAAGGCATTATGTATA+TGG + Chr4:56643451-56643470 None:intergenic 30.0%
! AGTCTCATATCGACTATAAA+AGG - Chr4:56643395-56643414 MsG0480021315.01.T01:intron 30.0%
! AGTTGATGTATGGAGTAAAT+CGG - Chr4:56642030-56642049 MsG0480021315.01.T01:intron 30.0%
! CATTTTTACACCTGATCAAA+TGG - Chr4:56642404-56642423 MsG0480021315.01.T01:intron 30.0%
! CCTTAAGGCATTATGTATAT+GGG + Chr4:56643450-56643469 None:intergenic 30.0%
! TACATAATGCCTTAAGGTTT+TGG - Chr4:56643453-56643472 MsG0480021315.01.T01:intron 30.0%
! TAGAGGATCATCTTTCTTTT+TGG - Chr4:56642168-56642187 MsG0480021315.01.T01:intron 30.0%
!! AAACCTTTCTACTTTTATGG+TGG - Chr4:56644269-56644288 MsG0480021315.01.T01:CDS 30.0%
!! ATTAGGATTTTCAAGAAGCT+TGG + Chr4:56642755-56642774 None:intergenic 30.0%
!! GGTAAACCTTTCTACTTTTA+TGG - Chr4:56644266-56644285 MsG0480021315.01.T01:CDS 30.0%
!! TATTGGTAACAACTTTTCCT+TGG - Chr4:56643698-56643717 MsG0480021315.01.T01:intron 30.0%
!! TGAAATAGTCTTTGCTATTG+AGG - Chr4:56642827-56642846 MsG0480021315.01.T01:intron 30.0%
!! TTATTAGGTTCGGTTTTCAT+CGG - Chr4:56643923-56643942 MsG0480021315.01.T01:intron 30.0%
!!! ACGTGTTTTGAAGGTTTTTA+TGG - Chr4:56641244-56641263 MsG0480021315.01.T01:three_prime_UTR 30.0%
!!! CATCTTTCTTTTTGGTTTGA+AGG - Chr4:56642176-56642195 MsG0480021315.01.T01:intron 30.0%
!!! CGTGTTTTGAAGGTTTTTAT+GGG - Chr4:56641245-56641264 MsG0480021315.01.T01:three_prime_UTR 30.0%
!!! GTGTTTTGAAGGTTTTTATG+GGG - Chr4:56641246-56641265 MsG0480021315.01.T01:three_prime_UTR 30.0%
AAAAGAAGCAACATGCAACA+TGG + Chr4:56643587-56643606 None:intergenic 35.0%
AAATTCAAGAACTAACCTCC+TGG + Chr4:56642434-56642453 None:intergenic 35.0%
AAGCCACCATAAAAGTAGAA+AGG + Chr4:56644275-56644294 None:intergenic 35.0%
ACAAAGATATACGTTCAAGG+CGG + Chr4:56644212-56644231 None:intergenic 35.0%
ACATATACATAAGAAGCGGT+TGG + Chr4:56643206-56643225 None:intergenic 35.0%
ACCAGTAGTGCTAAAAAGAA+TGG + Chr4:56642559-56642578 None:intergenic 35.0%
AGAGTTACAAAACACAAGAC+AGG + Chr4:56641859-56641878 None:intergenic 35.0%
AGGAGTAAGCCTACTTATTT+CGG - Chr4:56642859-56642878 MsG0480021315.01.T01:intron 35.0%
CAACTCAGGCATAAATGATT+GGG + Chr4:56642015-56642034 None:intergenic 35.0%
CAGCACTTTCTATGAATTCT+AGG + Chr4:56643863-56643882 None:intergenic 35.0%
CATAAATGATTGGGCAGTTT+GGG + Chr4:56642006-56642025 None:intergenic 35.0%
CCCATATACATAATGCCTTA+AGG - Chr4:56643447-56643466 MsG0480021315.01.T01:intron 35.0%
CCTACTTATTTCGGTAGAAT+GGG - Chr4:56642868-56642887 MsG0480021315.01.T01:intron 35.0%
CTAACTATTGGAGCTGTATT+CGG - Chr4:56642333-56642352 MsG0480021315.01.T01:intron 35.0%
CTAAGGTCTCTTCTAACTAT+TGG - Chr4:56642321-56642340 MsG0480021315.01.T01:intron 35.0%
CTTGGTATGAAAGATTCTTG+GGG - Chr4:56640962-56640981 MsG0480021315.01.T01:three_prime_UTR 35.0%
GAAAATTTCACTGTCTCCTT+TGG - Chr4:56642469-56642488 MsG0480021315.01.T01:intron 35.0%
GAACCTATGTGAAACAGATT+AGG + Chr4:56642772-56642791 None:intergenic 35.0%
GATCAGGTGTAAAAATGTAG+GGG + Chr4:56642401-56642420 None:intergenic 35.0%
GCAGAGCTACTAAATAGTTA+AGG + Chr4:56642911-56642930 None:intergenic 35.0%
GTCTTGGTATGAAAGATTCT+TGG - Chr4:56640960-56640979 MsG0480021315.01.T01:three_prime_UTR 35.0%
GTGAATTAGTAAGGAGAACA+TGG + Chr4:56642221-56642240 None:intergenic 35.0%
TAACTATTGGAGCTGTATTC+GGG - Chr4:56642334-56642353 MsG0480021315.01.T01:intron 35.0%
TACATGTTATGCGCAATATG+TGG - Chr4:56641969-56641988 MsG0480021315.01.T01:intron 35.0%
TCAACTCAGGCATAAATGAT+TGG + Chr4:56642016-56642035 None:intergenic 35.0%
TCCGAGTATAAAATGCCATT+GGG + Chr4:56643969-56643988 None:intergenic 35.0%
TTATAGTATCTTGACAGGCT+CGG - Chr4:56642292-56642311 MsG0480021315.01.T01:intron 35.0%
TTCCGAGTATAAAATGCCAT+TGG + Chr4:56643970-56643989 None:intergenic 35.0%
TTCGTGAACATATTCTGACA+GGG - Chr4:56643889-56643908 MsG0480021315.01.T01:intron 35.0%
TTGTGATTATGCAGATGCAT+AGG - Chr4:56642524-56642543 MsG0480021315.01.T01:intron 35.0%
TTGTGTATATTTGCTCATGC+AGG - Chr4:56643609-56643628 MsG0480021315.01.T01:intron 35.0%
TTTAAACTATGGGATTGCTG+GGG - Chr4:56641051-56641070 MsG0480021315.01.T01:three_prime_UTR 35.0%
TTTACTCCATACATCAACTC+AGG + Chr4:56642029-56642048 None:intergenic 35.0%
TTTCGTGAACATATTCTGAC+AGG - Chr4:56643888-56643907 MsG0480021315.01.T01:intron 35.0%
! AACTGAAAGTTCTGATGTGT+AGG - Chr4:56641753-56641772 MsG0480021315.01.T01:intron 35.0%
! ATAAGTTTGTTCGGCATACT+TGG + Chr4:56641099-56641118 None:intergenic 35.0%
! CTTGGAATTTGGGTTCAAAA+TGG - Chr4:56644334-56644353 MsG0480021315.01.T01:CDS 35.0%
! GCTTTGCCATTTAGAAATAG+AGG - Chr4:56644291-56644310 MsG0480021315.01.T01:CDS 35.0%
! GGAATTAAGGCTTCTTTTAG+TGG - Chr4:56642490-56642509 MsG0480021315.01.T01:intron 35.0%
! TAAGTTTGTTCGGCATACTT+GGG + Chr4:56641098-56641117 None:intergenic 35.0%
! TCCCAATGGCATTTTATACT+CGG - Chr4:56643965-56643984 MsG0480021315.01.T01:intron 35.0%
! TCTTTCTAGCAGTGCAATTA+GGG - Chr4:56643281-56643300 MsG0480021315.01.T01:intron 35.0%
! TGCTATTGAGGTGCTAAAAA+AGG - Chr4:56642839-56642858 MsG0480021315.01.T01:intron 35.0%
! TTCAAAATGGCTTGTAAGGT+AGG - Chr4:56644347-56644366 MsG0480021315.01.T01:CDS 35.0%
! TTCACTTGCTGGATTTCAAT+GGG - Chr4:56643826-56643845 MsG0480021315.01.T01:intron 35.0%
! TTTCACTTGCTGGATTTCAA+TGG - Chr4:56643825-56643844 MsG0480021315.01.T01:intron 35.0%
!! ACTGGATGCTTTTGTTTGAA+TGG - Chr4:56643667-56643686 MsG0480021315.01.T01:intron 35.0%
!! AGCAAAGCTCTAAATGACAA+GGG - Chr4:56641573-56641592 MsG0480021315.01.T01:intron 35.0%
!! TCCATTCTTTTTAGCACTAC+TGG - Chr4:56642555-56642574 MsG0480021315.01.T01:intron 35.0%
!! TCTTTTAGGAGAACTGATCT+TGG + Chr4:56642941-56642960 None:intergenic 35.0%
!! TGCTCTCCTCTATTTCTAAA+TGG + Chr4:56644300-56644319 None:intergenic 35.0%
!! TGTTGGTAGTGTTATTCAGT+TGG - Chr4:56642669-56642688 MsG0480021315.01.T01:intron 35.0%
!! TTTATGCCTGAGTTGATGTA+TGG - Chr4:56642020-56642039 MsG0480021315.01.T01:intron 35.0%
!!! CGGATTTTAGAATCCGAATA+GGG + Chr4:56641214-56641233 None:intergenic 35.0%
!!! CTTATTTTAGGTCATGCTTC+AGG - Chr4:56641944-56641963 MsG0480021315.01.T01:intron 35.0%
!!! TAATGCCTTAAGGTTTTGGA+TGG - Chr4:56643457-56643476 MsG0480021315.01.T01:intron 35.0%
!!! TCGGATTTTAGAATCCGAAT+AGG + Chr4:56641215-56641234 None:intergenic 35.0%
AAATGCCATTGGGAGATAGA+AGG + Chr4:56643959-56643978 None:intergenic 40.0%
AAATTCCTTCCCTGAAGGAA+TGG + Chr4:56641619-56641638 None:intergenic 40.0%
AATGTGCAGATAGACAGCAA+AGG + Chr4:56641885-56641904 None:intergenic 40.0%
ACCAAATAACTATACCCCAG+TGG + Chr4:56644249-56644268 None:intergenic 40.0%
AGTAAATCGGAGTTTGGCAA+AGG - Chr4:56642043-56642062 MsG0480021315.01.T01:intron 40.0%
ATCAATAGGGTGGGAAAAGA+AGG - Chr4:56641320-56641339 MsG0480021315.01.T01:exon 40.0%
CAACGATCCACTACTATGAT+CGG + Chr4:56643252-56643271 None:intergenic 40.0%
CCCATTCTACCGAAATAAGT+AGG + Chr4:56642871-56642890 None:intergenic 40.0%
GATCTCCATCCAAAACCTTA+AGG + Chr4:56643465-56643484 None:intergenic 40.0%
GATCTGCATCGAGGTAAATT+GGG + Chr4:56643771-56643790 None:intergenic 40.0%
GCATAAATGATTGGGCAGTT+TGG + Chr4:56642007-56642026 None:intergenic 40.0%
GCCTACTTATTTCGGTAGAA+TGG - Chr4:56642867-56642886 MsG0480021315.01.T01:intron 40.0%
GCTGCTGCCAGTATTATAAA+TGG - Chr4:56641001-56641020 MsG0480021315.01.T01:three_prime_UTR 40.0%
GGATTTCAATGGGTAAGACT+CGG - Chr4:56643836-56643855 MsG0480021315.01.T01:intron 40.0%
GTACTTTCATGATCCTACTC+AGG - Chr4:56643224-56643243 MsG0480021315.01.T01:intron 40.0%
GTATGGAGTAAATCGGAGTT+TGG - Chr4:56642037-56642056 MsG0480021315.01.T01:intron 40.0%
TATATTTGCTCATGCAGGCT+GGG - Chr4:56643614-56643633 MsG0480021315.01.T01:intron 40.0%
TCATAGGGTGGGAAAAGTAA+TGG + Chr4:56641179-56641198 None:intergenic 40.0%
TCTTGTTGGTCCATGACATT+GGG - Chr4:56643498-56643517 MsG0480021315.01.T01:intron 40.0%
TGCACTGCTAGAAAGACTAT+GGG + Chr4:56643277-56643296 None:intergenic 40.0%
TGTCGATACAATTCAGTGCT+TGG - Chr4:56644119-56644138 MsG0480021315.01.T01:intron 40.0%
TTGCACTGCTAGAAAGACTA+TGG + Chr4:56643278-56643297 None:intergenic 40.0%
TTTCCTTCACCATTCCTTCA+GGG - Chr4:56641607-56641626 MsG0480021315.01.T01:intron 40.0%
! ACACTTGAGGGGGATATTTT+TGG - Chr4:56643354-56643373 MsG0480021315.01.T01:CDS 40.0%
! ACAGGTTTGCATCGATAACT+CGG - Chr4:56642977-56642996 MsG0480021315.01.T01:CDS 40.0%
! CACTTGAGGGGGATATTTTT+GGG - Chr4:56643355-56643374 MsG0480021315.01.T01:CDS 40.0%
! GTCTTTCTAGCAGTGCAATT+AGG - Chr4:56643280-56643299 MsG0480021315.01.T01:intron 40.0%
! TCAATTTTTGCAGCTCAGAC+TGG + Chr4:56644001-56644020 None:intergenic 40.0%
! TGAAAGTTCTGATGTGTAGG+TGG - Chr4:56641756-56641775 MsG0480021315.01.T01:intron 40.0%
! TGGGTTCAAAATGGCTTGTA+AGG - Chr4:56644343-56644362 MsG0480021315.01.T01:CDS 40.0%
! TTTTCCTTCACCATTCCTTC+AGG - Chr4:56641606-56641625 MsG0480021315.01.T01:intron 40.0%
!! AATCAACGTGCACTGCTTTT+AGG - Chr4:56641530-56641549 MsG0480021315.01.T01:CDS 40.0%
!! CACTGTCTCCTTTGGAATTA+AGG - Chr4:56642477-56642496 MsG0480021315.01.T01:intron 40.0%
!! GAGCAAAGCTCTAAATGACA+AGG - Chr4:56641572-56641591 MsG0480021315.01.T01:intron 40.0%
!!! ACAACTTTTCCTTGGTTTGC+TGG - Chr4:56643706-56643725 MsG0480021315.01.T01:intron 40.0%
!!! GGAGCTCCATTTTTAGTTCA+TGG - Chr4:56644036-56644055 MsG0480021315.01.T01:intron 40.0%
!!! TAAGGTTTTGGATGGAGATC+TGG - Chr4:56643465-56643484 MsG0480021315.01.T01:intron 40.0%
!!! TTTTTGGGTTCAAGTGTGAG+TGG - Chr4:56643370-56643389 MsG0480021315.01.T01:CDS 40.0%
AAGATATACGTTCAAGGCGG+TGG + Chr4:56644209-56644228 None:intergenic 45.0%
ACCTGATCAAATGGTCATCC+AGG - Chr4:56642413-56642432 MsG0480021315.01.T01:intron 45.0%
AGTTGTATCGGAAACTGTGC+GGG - Chr4:56644157-56644176 MsG0480021315.01.T01:intron 45.0%
ATGTGAGACTCACACTTGAG+GGG - Chr4:56643343-56643362 MsG0480021315.01.T01:CDS 45.0%
ATTCAGTGCTTGGAAACTGC+AGG - Chr4:56644129-56644148 MsG0480021315.01.T01:intron 45.0%
CAAAAACAGGCCCAATGTCA+TGG + Chr4:56643511-56643530 None:intergenic 45.0%
CAAGACTGCGTGAAAGAATG+TGG + Chr4:56640946-56640965 None:intergenic 45.0%
CACATTCTTTCACGCAGTCT+TGG - Chr4:56640944-56640963 MsG0480021315.01.T01:three_prime_UTR 45.0%
CAGATCCTATCCAGCAGATA+TGG - Chr4:56643785-56643804 MsG0480021315.01.T01:intron 45.0%
CTATGTACACCAGCAAACCA+AGG + Chr4:56643718-56643737 None:intergenic 45.0%
CTCTTGTTGGTCCATGACAT+TGG - Chr4:56643497-56643516 MsG0480021315.01.T01:intron 45.0%
CTGGTATGCTCATGTTCGAT+TGG - Chr4:56642613-56642632 MsG0480021315.01.T01:intron 45.0%
GACAGAAATTCCTTCCCTGA+AGG + Chr4:56641624-56641643 None:intergenic 45.0%
GAGTTGTATCGGAAACTGTG+CGG - Chr4:56644156-56644175 MsG0480021315.01.T01:intron 45.0%
GATGTGAGACTCACACTTGA+GGG - Chr4:56643342-56643361 MsG0480021315.01.T01:CDS 45.0%
GCAAACCATATCTGCTGGAT+AGG + Chr4:56643793-56643812 None:intergenic 45.0%
GCCACTGGGGTATAGTTATT+TGG - Chr4:56644245-56644264 MsG0480021315.01.T01:CDS 45.0%
GGATCTGCATCGAGGTAAAT+TGG + Chr4:56643772-56643791 None:intergenic 45.0%
GTATATTTGCTCATGCAGGC+TGG - Chr4:56643613-56643632 MsG0480021315.01.T01:intron 45.0%
TATGGGGTGTATATGCCGTT+CGG - Chr4:56641262-56641281 MsG0480021315.01.T01:three_prime_UTR 45.0%
TCATGGACCAACAAGAGATC+AGG + Chr4:56643494-56643513 None:intergenic 45.0%
TCCTGGATGACCATTTGATC+AGG + Chr4:56642417-56642436 None:intergenic 45.0%
TGATCAAATGGTCATCCAGG+AGG - Chr4:56642416-56642435 MsG0480021315.01.T01:intron 45.0%
TTCCCACCCTATGAGTTTCT+CGG - Chr4:56641185-56641204 MsG0480021315.01.T01:three_prime_UTR 45.0%
! GATATGGTTTGCAAGGCTGT+TGG - Chr4:56643801-56643820 MsG0480021315.01.T01:intron 45.0%
! GTTTGCATCGATAACTCGGA+GGG - Chr4:56642981-56643000 MsG0480021315.01.T01:CDS 45.0%
! TCCAGCAGATATGGTTTGCA+AGG - Chr4:56643794-56643813 MsG0480021315.01.T01:intron 45.0%
! TGGCTTGTAAGGTAGGAATG+TGG - Chr4:56644354-56644373 MsG0480021315.01.T01:CDS 45.0%
!!! AGCTGTATTCGGGTTGCTTT+TGG - Chr4:56642344-56642363 MsG0480021315.01.T01:intron 45.0%
!!! CTGTATTCGGGTTGCTTTTG+GGG - Chr4:56642346-56642365 MsG0480021315.01.T01:intron 45.0%
!!! GCTGTATTCGGGTTGCTTTT+GGG - Chr4:56642345-56642364 MsG0480021315.01.T01:intron 45.0%
ACCCGAGAAACTCATAGGGT+GGG + Chr4:56641190-56641209 None:intergenic 50.0%
ACTATGATCGGAGCCTGAGT+AGG + Chr4:56643240-56643259 None:intergenic 50.0%
AGAGCGCGCGAGAAATCAAT+AGG - Chr4:56641306-56641325 MsG0480021315.01.T01:three_prime_UTR 50.0%
AGATTCTTGGGGACCCTTGA+AGG - Chr4:56640973-56640992 MsG0480021315.01.T01:three_prime_UTR 50.0%
AGTTTCTCGGGTGCCCTATT+CGG - Chr4:56641198-56641217 MsG0480021315.01.T01:three_prime_UTR 50.0%
ATACCAGCAATGTTCCCTCC+AGG + Chr4:56642600-56642619 None:intergenic 50.0%
CTGGTGTCCTGATCTCTTGT+TGG - Chr4:56643484-56643503 MsG0480021315.01.T01:intron 50.0%
CTTCACCATTCCTTCAGGGA+AGG - Chr4:56641611-56641630 MsG0480021315.01.T01:intron 50.0%
CTTCCCTGAAGGAATGGTGA+AGG + Chr4:56641613-56641632 None:intergenic 50.0%
GAGCGCGCGAGAAATCAATA+GGG - Chr4:56641307-56641326 MsG0480021315.01.T01:three_prime_UTR 50.0%
GCCTTGCAAACCATATCTGC+TGG + Chr4:56643798-56643817 None:intergenic 50.0%
GCGCGAGAAATCAATAGGGT+GGG - Chr4:56641311-56641330 MsG0480021315.01.T01:exon 50.0%
GGAGCAACGAGAGCAAAAAC+AGG + Chr4:56643524-56643543 None:intergenic 50.0%
GGATGTGAGACTCACACTTG+AGG - Chr4:56643341-56643360 MsG0480021315.01.T01:CDS 50.0%
GTCATGAATGTTGGGGAGTC+CGG + Chr4:56643548-56643567 None:intergenic 50.0%
GTTGTATCGGAAACTGTGCG+GGG - Chr4:56644158-56644177 MsG0480021315.01.T01:intron 50.0%
TCAGGCTCCGATCATAGTAG+TGG - Chr4:56643242-56643261 MsG0480021315.01.T01:intron 50.0%
TCATGAATGTTGGGGAGTCC+GGG + Chr4:56643547-56643566 None:intergenic 50.0%
TCCCACCCTATGAGTTTCTC+GGG - Chr4:56641186-56641205 MsG0480021315.01.T01:three_prime_UTR 50.0%
TGTGAGACTCACACTTGAGG+GGG - Chr4:56643344-56643363 MsG0480021315.01.T01:CDS 50.0%
! GCGGTTGGTACTTCCATGTA+AGG + Chr4:56643191-56643210 None:intergenic 50.0%
! GGTTTGCATCGATAACTCGG+AGG - Chr4:56642980-56642999 MsG0480021315.01.T01:CDS 50.0%
!! CTGCAGGTGCTGAGTTGTAT+CGG - Chr4:56644145-56644164 MsG0480021315.01.T01:intron 50.0%
!! TGATCAAGTGTGGTGCCACT+GGG - Chr4:56644231-56644250 MsG0480021315.01.T01:CDS 50.0%
!!! GGCTGTTGGTTTTCACTTGC+TGG - Chr4:56643815-56643834 MsG0480021315.01.T01:intron 50.0%
ATGAATGTTGGGGAGTCCGG+GGG + Chr4:56643545-56643564 None:intergenic 55.0%
ATTTGCTCATGCAGGCTGGG+CGG - Chr4:56643617-56643636 MsG0480021315.01.T01:intron 55.0%
CACCCGAGAAACTCATAGGG+TGG + Chr4:56641191-56641210 None:intergenic 55.0%
CATGAATGTTGGGGAGTCCG+GGG + Chr4:56643546-56643565 None:intergenic 55.0%
CGCGCGAGAAATCAATAGGG+TGG - Chr4:56641310-56641329 MsG0480021315.01.T01:exon 55.0%
CGGAAACTGTGCGGGGAAAT+GGG - Chr4:56644165-56644184 MsG0480021315.01.T01:intron 55.0%
CTGCGCCTTCTATCTCCCAA+TGG - Chr4:56643951-56643970 MsG0480021315.01.T01:intron 55.0%
CTGGTCACACCTGCAACAGT+CGG - Chr4:56642574-56642593 MsG0480021315.01.T01:intron 55.0%
GAAACTGTGCGGGGAAATGG+GGG - Chr4:56644167-56644186 MsG0480021315.01.T01:intron 55.0%
GATTGGGCAGTTTGGGAGAG+AGG + Chr4:56641999-56642018 None:intergenic 55.0%
GCAGCAGCCAAAGCCTTCAA+GGG + Chr4:56640989-56641008 None:intergenic 55.0%
GCTGGATAGGATCTGCATCG+AGG + Chr4:56643780-56643799 None:intergenic 55.0%
GGAAACTGTGCGGGGAAATG+GGG - Chr4:56644166-56644185 MsG0480021315.01.T01:intron 55.0%
GGGCACCCGAGAAACTCATA+GGG + Chr4:56641194-56641213 None:intergenic 55.0%
TCGGAAACTGTGCGGGGAAA+TGG - Chr4:56644164-56644183 MsG0480021315.01.T01:intron 55.0%
TTGGGGACCCTTGAAGGCTT+TGG - Chr4:56640979-56640998 MsG0480021315.01.T01:three_prime_UTR 55.0%
! AGGGCACCCGAGAAACTCAT+AGG + Chr4:56641195-56641214 None:intergenic 55.0%
! GGGAGATAGAAGGCGCAGAA+GGG + Chr4:56643949-56643968 None:intergenic 55.0%
! TGGGAGATAGAAGGCGCAGA+AGG + Chr4:56643950-56643969 None:intergenic 55.0%
! TTTTGCTCTCGTTGCTCCCC+CGG - Chr4:56643526-56643545 MsG0480021315.01.T01:intron 55.0%
!! GATCAAGTGTGGTGCCACTG+GGG - Chr4:56644232-56644251 MsG0480021315.01.T01:CDS 55.0%
!! GTGATCAAGTGTGGTGCCAC+TGG - Chr4:56644230-56644249 MsG0480021315.01.T01:CDS 55.0%
ATGGGATTGCTGGGGCTGCA+TGG - Chr4:56641059-56641078 MsG0480021315.01.T01:three_prime_UTR 60.0%
GGCAGCAGCCAAAGCCTTCA+AGG + Chr4:56640990-56641009 None:intergenic 60.0%
TGCGGGGAAATGGGGGATGT+GGG - Chr4:56644174-56644193 MsG0480021315.01.T01:intron 60.0%
TGGGATTGCTGGGGCTGCAT+GGG - Chr4:56641060-56641079 MsG0480021315.01.T01:three_prime_UTR 60.0%
TTTGCTCATGCAGGCTGGGC+GGG - Chr4:56643618-56643637 MsG0480021315.01.T01:intron 60.0%
! GACAGGCTCGGTCGCTTCTA+AGG - Chr4:56642304-56642323 MsG0480021315.01.T01:intron 60.0%
! TGGGGCTGCATGGGCTACAT+TGG - Chr4:56641069-56641088 MsG0480021315.01.T01:three_prime_UTR 60.0%
ACCTGCAACAGTCGGCCTGG+AGG - Chr4:56642582-56642601 MsG0480021315.01.T01:intron 65.0%
CACACCTGCAACAGTCGGCC+TGG - Chr4:56642579-56642598 MsG0480021315.01.T01:intron 65.0%
CCTGCAACAGTCGGCCTGGA+GGG - Chr4:56642583-56642602 MsG0480021315.01.T01:intron 65.0%
CGGCCTGGAGGGAACATTGC+TGG - Chr4:56642594-56642613 MsG0480021315.01.T01:intron 65.0%
CTCGCGCGCTCTGTGCAGTT+TGG + Chr4:56641298-56641317 None:intergenic 65.0%
GTGCGGGGAAATGGGGGATG+TGG - Chr4:56644173-56644192 MsG0480021315.01.T01:intron 65.0%
CCCTCCAGGCCGACTGTTGC+AGG + Chr4:56642586-56642605 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56640911 56644447 56640911 ID=MsG0480021315.01;Name=MsG0480021315.01
Chr4 mRNA 56640911 56644447 56640911 ID=MsG0480021315.01.T01;Parent=MsG0480021315.01;Name=MsG0480021315.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.5|0.42|1|0.83|0.85|7|416|258
Chr4 exon 56640911 56641428 56640911 ID=MsG0480021315.01.T01:exon:7081;Parent=MsG0480021315.01.T01
Chr4 exon 56641511 56641570 56641511 ID=MsG0480021315.01.T01:exon:7080;Parent=MsG0480021315.01.T01
Chr4 exon 56641639 56641727 56641639 ID=MsG0480021315.01.T01:exon:7079;Parent=MsG0480021315.01.T01
Chr4 exon 56642743 56642812 56642743 ID=MsG0480021315.01.T01:exon:7078;Parent=MsG0480021315.01.T01
Chr4 exon 56642921 56643049 56642921 ID=MsG0480021315.01.T01:exon:7077;Parent=MsG0480021315.01.T01
Chr4 exon 56643294 56643392 56643294 ID=MsG0480021315.01.T01:exon:7076;Parent=MsG0480021315.01.T01
Chr4 exon 56644220 56644447 56644220 ID=MsG0480021315.01.T01:exon:7075;Parent=MsG0480021315.01.T01
Chr4 CDS 56644220 56644447 56644220 ID=MsG0480021315.01.T01:cds;Parent=MsG0480021315.01.T01
Chr4 CDS 56643294 56643392 56643294 ID=MsG0480021315.01.T01:cds;Parent=MsG0480021315.01.T01
Chr4 CDS 56642921 56643049 56642921 ID=MsG0480021315.01.T01:cds;Parent=MsG0480021315.01.T01
Chr4 CDS 56642743 56642812 56642743 ID=MsG0480021315.01.T01:cds;Parent=MsG0480021315.01.T01
Chr4 CDS 56641639 56641727 56641639 ID=MsG0480021315.01.T01:cds;Parent=MsG0480021315.01.T01
Chr4 CDS 56641511 56641570 56641511 ID=MsG0480021315.01.T01:cds;Parent=MsG0480021315.01.T01
Chr4 CDS 56641327 56641428 56641327 ID=MsG0480021315.01.T01:cds;Parent=MsG0480021315.01.T01
Chr4 three_prime_UTR 56640911 56641326 56640911 ID=MsG0480021315.01.T01:three_prime_utr;Parent=MsG0480021315.01.T01
Gene Sequence

>MsG0480021315.01.T01

TTGGGTTCTCATTTAATTCATATTCTTGGTATCCACATTCTTTCACGCAGTCTTGGTATGAAAGATTCTTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTATTATAAATGGAATTGGTGATATAGTTCTGTGCAGATATTTAAACTATGGGATTGCTGGGGCTGCATGGGCTACATTGGCATCCCAAGTATGCCGAACAAACTTATATGCATTACATTGTAAACAAGTCTACATGTTATGCGCAATATGTGGTGAACCTCTCTCCCAAACTGCCCAATCATTTATGCCTGAGTTGATGTATGGAGTAAATCGGAGTTTGGCAAAGGCTCGGTCGCTTCTAAGGTCTCTTCTAACTATTGGAGCTGTATTCGGGTTGCTTTTGGGGATTGTTGTAACATCTGTTACTTGGTTATTCCCCTACATTTTTACACCTGATCAAATGGTCATCCAGGAGGATTCTGATTCCATTCTTTTTAGCACTACTGGTCACACCTGCAACAGTCGGCCTGGAGGGAACATTGCTGGCTGGGCGGGATCTAAGATTTATAAGTTTGTCAATGACTGGATGCTTTTGTTTGAATGGTCTAGTATTATTGGTAACAACTTTTCCTTGATCCTATCCAGCAGATATGGTTTGCAAGGCTGTTGGTTTTCACTTGCTGGATTTCAATGGGTTCGGTTTTCATCGGCCCTTCTGCGCCTTCTATCTCCCAATGGCATTTTATACTCGGAAGATATAAGCCAGTCTGAGCTGCAAAAATTGAAGACTGCATAA

Protein sequence

>MsG0480021315.01.T01

LGSHLIHILGIHILSRSLGMKDSWGPLKALAAASIINGIGDIVLCRYLNYGIAGAAWATLASQVCRTNLYALHCKQVYMLCAICGEPLSQTAQSFMPELMYGVNRSLAKARSLLRSLLTIGAVFGLLLGIVVTSVTWLFPYIFTPDQMVIQEDSDSILFSTTGHTCNSRPGGNIAGWAGSKIYKFVNDWMLLFEWSSIIGNNFSLILSSRYGLQGCWFSLAGFQWVRFSSALLRLLSPNGILYSEDISQSELQKLKTA*