AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009860 MtrunA17_Chr7g0220501 75.424 354 19 5 1 286 1 354 3.24e-178 515
Msa1009860 MtrunA17_Chr7g0220481 64.024 328 64 6 2 286 3 319 9.58e-125 376
Msa1009860 MtrunA17_Chr4g0059671 33.750 160 93 2 158 304 149 308 7.82e-22 95.9
Msa1009860 MtrunA17_Chr4g0059671 30.769 130 87 2 160 287 327 455 1.34e-12 68.2
Msa1009860 MtrunA17_Chr3g0099661 31.538 130 87 1 158 285 217 346 4.00e-18 85.1
Msa1009860 MtrunA17_Chr3g0099661 28.926 121 83 2 167 285 472 591 4.02e-11 63.9
Msa1009860 MtrunA17_Chr3g0093791 32.308 130 85 2 158 285 421 549 8.58e-17 80.9
Msa1009860 MtrunA17_Chr4g0076151 36.893 103 62 2 158 258 262 363 8.22e-14 72.0
Msa1009860 MtrunA17_Chr5g0446031 34.711 121 74 3 167 284 223 341 3.14e-13 70.1
Msa1009860 MtrunA17_Chr6g0481991 32.812 128 81 3 162 286 353 478 8.92e-13 68.6
Msa1009860 MtrunA17_Chr6g0481991 30.872 149 92 4 161 302 177 321 3.87e-11 63.5
Msa1009860 MtrunA17_Chr3g0102961 31.818 132 81 3 160 286 257 384 1.35e-12 68.2
Msa1009860 MtrunA17_Chr6g0481971 30.822 146 94 4 162 302 316 459 1.41e-12 68.2
Msa1009860 MtrunA17_Chr6g0481981 30.216 139 92 4 152 286 145 282 2.18e-12 67.4
Msa1009860 MtrunA17_Chr6g0458411 28.571 140 95 3 161 296 283 421 3.04e-12 67.0
Msa1009860 MtrunA17_Chr2g0297991 33.962 106 67 2 184 287 415 519 5.14e-12 66.6
Msa1009860 MtrunA17_Chr1g0162281 30.000 150 94 4 160 302 417 562 5.75e-12 66.2
Msa1009860 MtrunA17_Chr6g0482541 27.160 162 82 3 160 285 90 251 6.43e-12 65.5
Msa1009860 MtrunA17_Chr2g0277871 29.851 134 90 3 158 288 171 303 7.39e-12 65.5
Msa1009860 MtrunA17_Chr6g0482801 33.036 112 70 3 177 285 5 114 8.73e-12 62.8
Msa1009860 MtrunA17_Chr8g0353181 29.752 121 84 1 166 286 254 373 1.18e-11 65.1
Msa1009860 MtrunA17_Chr4g0033981 31.618 136 88 3 166 297 411 545 1.19e-11 65.5
Msa1009860 MtrunA17_Chr6g0478001 34.646 127 78 3 162 285 330 454 1.38e-11 65.1
Msa1009860 MtrunA17_Chr4g0037841 29.936 157 96 5 152 301 316 465 1.46e-11 65.1
Msa1009860 MtrunA17_Chr4g0060341 29.936 157 96 5 152 301 316 465 1.74e-11 64.7
Msa1009860 MtrunA17_Chr6g0478551 33.588 131 82 4 159 286 349 477 1.84e-11 64.7
Msa1009860 MtrunA17_Chr1g0182521 26.846 149 100 5 159 300 284 430 2.32e-11 64.3
Msa1009860 MtrunA17_Chr5g0396041 28.244 131 90 3 158 285 241 370 2.62e-11 64.7
Msa1009860 MtrunA17_Chr2g0292711 28.244 131 91 2 158 286 476 605 3.14e-11 63.9
Msa1009860 MtrunA17_Chr2g0292711 30.894 123 80 3 158 277 441 561 5.93e-11 63.2
Msa1009860 MtrunA17_Chr6g0471201 29.231 130 89 2 158 285 357 485 3.25e-11 63.9
Msa1009860 MtrunA17_Chr6g0482551 28.369 141 96 3 160 296 251 390 4.17e-11 63.5
Msa1009860 MtrunA17_Chr8g0391651 30.000 150 96 6 159 302 289 435 4.42e-11 63.5
Msa1009860 MtrunA17_Chr6g0449581 30.370 135 88 4 168 297 284 417 6.82e-11 63.2
Msa1009860 MtrunA17_Chr6g0482901 33.113 151 94 4 162 307 328 476 7.69e-11 62.8
Msa1009860 MtrunA17_Chr1g0160881 32.710 107 69 2 182 286 347 452 9.81e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009860 AT2G31400.2 33.538 325 165 7 6 286 57 374 7.10e-46 166
Msa1009860 AT2G31400.1 33.538 325 165 7 6 286 57 374 1.02e-45 166
Msa1009860 AT1G74850.1 35.385 130 82 1 158 285 152 281 8.00e-22 96.3
Msa1009860 AT1G74850.1 32.576 132 86 2 158 287 328 458 6.46e-14 72.8
Msa1009860 AT5G02860.1 26.119 268 162 9 28 277 56 305 8.27e-17 81.3
Msa1009860 AT5G02860.1 30.303 132 86 3 156 285 431 558 2.97e-13 70.9
Msa1009860 AT5G02860.4 26.119 268 162 9 28 277 56 305 8.27e-17 81.3
Msa1009860 AT5G02860.4 30.303 132 86 3 156 285 431 558 2.97e-13 70.9
Msa1009860 AT5G02860.2 26.119 268 162 9 28 277 56 305 8.27e-17 81.3
Msa1009860 AT5G02860.2 30.303 132 86 3 156 285 431 558 2.97e-13 70.9
Msa1009860 AT5G02860.5 26.119 268 162 9 28 277 56 305 8.27e-17 81.3
Msa1009860 AT5G02860.5 30.303 132 86 3 156 285 431 558 2.97e-13 70.9
Msa1009860 AT5G02860.3 26.119 268 162 9 28 277 56 305 8.27e-17 81.3
Msa1009860 AT5G02860.3 30.303 132 86 3 156 285 431 558 2.97e-13 70.9
Msa1009860 AT1G18900.4 29.231 130 89 2 158 285 445 573 1.86e-15 77.4
Msa1009860 AT1G18900.2 29.231 130 89 2 158 285 445 573 1.86e-15 77.4
Msa1009860 AT1G18900.1 29.231 130 89 2 158 285 445 573 1.86e-15 77.4
Msa1009860 AT1G18900.3 29.231 130 89 2 158 285 445 573 2.28e-15 77.0
Msa1009860 AT1G74750.2 29.231 130 89 2 158 285 440 568 7.63e-15 75.5
Msa1009860 AT1G74750.1 29.231 130 89 2 158 285 440 568 7.63e-15 75.5
Msa1009860 AT1G74750.4 29.231 130 89 2 158 285 440 568 7.63e-15 75.5
Msa1009860 AT1G74750.3 29.231 130 89 2 158 285 440 568 7.63e-15 75.5
Msa1009860 AT5G16640.1 33.077 130 84 2 159 286 128 256 2.79e-14 73.6
Msa1009860 AT5G16640.1 30.714 140 90 4 162 296 201 338 9.27e-11 62.8
Msa1009860 AT1G62720.1 34.677 124 78 2 165 286 122 244 2.97e-14 73.6
Msa1009860 AT1G62720.1 32.308 130 85 2 159 286 186 314 9.14e-14 72.0
Msa1009860 AT3G18110.1 32.824 131 84 3 158 285 202 331 5.17e-14 73.2
Msa1009860 AT2G02150.1 32.308 130 83 3 159 285 274 401 1.15e-13 72.0
Msa1009860 AT2G02150.2 32.308 130 83 3 159 285 274 401 1.15e-13 72.0
Msa1009860 AT3G06920.1 32.258 124 79 3 164 284 185 306 5.15e-13 70.1
Msa1009860 AT3G06920.2 32.258 124 79 3 164 284 199 320 5.46e-13 70.1
Msa1009860 AT3G06920.3 32.258 124 79 3 164 284 199 320 5.46e-13 70.1
Msa1009860 AT1G63080.2 34.921 126 79 2 163 286 256 380 1.35e-12 68.6
Msa1009860 AT1G63080.1 34.921 126 79 2 163 286 256 380 1.35e-12 68.6
Msa1009860 AT1G63080.3 34.921 126 79 2 163 286 256 380 1.35e-12 68.6
Msa1009860 AT3G22470.1 31.293 147 96 3 165 307 228 373 1.74e-12 68.2
Msa1009860 AT3G22470.2 31.293 147 96 3 165 307 228 373 1.92e-12 68.2
Msa1009860 AT1G64580.1 33.929 112 71 2 177 286 144 254 3.09e-12 67.4
Msa1009860 AT2G18940.1 31.148 122 81 2 166 285 370 490 3.20e-12 67.4
Msa1009860 AT2G18940.1 28.689 122 85 1 158 277 186 307 4.25e-12 67.4
Msa1009860 AT1G62590.2 30.201 149 99 3 163 307 276 423 4.15e-12 67.0
Msa1009860 AT1G62590.1 30.201 149 99 3 163 307 276 423 4.15e-12 67.0
Msa1009860 AT1G09900.1 32.520 123 80 2 166 286 398 519 4.98e-12 67.0
Msa1009860 AT1G51965.1 28.244 131 91 3 158 286 491 620 6.22e-12 66.6
Msa1009860 AT1G51965.1 31.707 123 79 4 158 277 456 576 2.21e-11 65.1
Msa1009860 AT5G39710.1 28.387 155 103 4 152 302 423 573 6.44e-12 66.6
Msa1009860 AT1G64100.2 35.338 133 77 3 159 286 273 401 8.76e-12 66.2
Msa1009860 AT4G26680.2 29.412 136 90 3 153 286 282 413 9.08e-12 65.9
Msa1009860 AT4G26680.1 29.412 136 90 3 153 286 282 413 9.08e-12 65.9
Msa1009860 AT1G64100.1 35.338 133 77 3 159 286 273 401 1.05e-11 65.9
Msa1009860 AT1G64100.3 35.338 133 77 3 159 286 273 401 1.05e-11 65.9
Msa1009860 AT5G12100.1 33.333 144 85 4 159 295 191 330 1.21e-11 65.9
Msa1009860 AT1G06580.1 31.579 133 82 4 159 286 126 254 1.22e-11 65.5
Msa1009860 AT1G06580.3 32.558 129 78 4 163 286 24 148 1.33e-11 65.1
Msa1009860 AT1G06580.2 32.558 129 78 4 163 286 24 148 1.33e-11 65.1
Msa1009860 AT1G64583.2 31.496 127 82 3 163 286 97 221 1.42e-11 65.5
Msa1009860 AT1G64583.1 31.496 127 82 3 163 286 122 246 1.81e-11 65.1
Msa1009860 AT1G63330.3 29.530 149 100 3 163 307 201 348 1.92e-11 65.1
Msa1009860 AT1G63330.1 29.530 149 100 3 163 307 201 348 1.92e-11 65.1
Msa1009860 AT1G63330.2 29.530 149 100 3 163 307 201 348 1.92e-11 65.1
Msa1009860 AT5G41170.3 31.250 128 85 2 161 286 91 217 2.96e-11 64.3
Msa1009860 AT5G41170.3 31.858 113 72 3 177 286 37 147 3.33e-11 63.9
Msa1009860 AT1G62680.1 29.921 127 86 2 162 286 135 260 3.09e-11 64.3
Msa1009860 AT1G62680.2 29.921 127 86 2 162 286 135 260 3.09e-11 64.3
Msa1009860 AT1G63070.1 31.967 122 80 2 166 285 199 319 3.26e-11 64.3
Msa1009860 AT5G41170.1 31.250 128 85 2 161 286 191 317 3.59e-11 64.3
Msa1009860 AT5G41170.1 31.858 113 72 3 177 286 137 247 3.76e-11 63.9
Msa1009860 AT5G41170.2 31.858 113 72 3 177 286 137 247 3.69e-11 63.9
Msa1009860 AT5G41170.2 31.250 128 85 2 161 286 191 317 3.73e-11 63.9
Msa1009860 AT5G40400.2 30.827 133 85 4 169 296 329 459 4.13e-11 63.9
Msa1009860 AT5G40400.1 30.827 133 85 4 169 296 258 388 4.69e-11 63.9
Msa1009860 AT4G16390.1 30.097 103 69 2 158 258 256 357 5.29e-11 63.9
Msa1009860 AT1G09820.1 30.128 156 98 6 152 302 339 488 5.87e-11 63.5
Msa1009860 AT1G12700.3 32.031 128 82 4 161 285 258 383 6.36e-11 63.5
Msa1009860 AT1G12700.2 32.031 128 82 4 161 285 258 383 6.36e-11 63.5
Msa1009860 AT1G12700.1 32.031 128 82 4 161 285 242 367 6.46e-11 63.5
Msa1009860 AT3G16010.1 26.380 163 83 2 159 284 280 442 7.02e-11 63.5
Msa1009860 AT1G62670.2 30.894 123 82 2 166 286 205 326 7.03e-11 63.5
Msa1009860 AT1G62670.1 30.894 123 82 2 166 286 205 326 7.03e-11 63.5
Msa1009860 AT5G65560.1 35.200 125 70 4 170 285 374 496 7.42e-11 63.5
Msa1009860 AT5G65560.2 35.200 125 70 4 170 285 374 496 7.42e-11 63.5
Msa1009860 AT5G65560.3 35.200 125 70 4 170 285 374 496 7.42e-11 63.5
Msa1009860 AT1G52640.1 33.333 129 83 2 159 285 255 382 9.82e-11 62.8

Find 97 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTGGTGGTGGCAGGGGC+AGG 0.101227 7_1:-11899056 Msa1009860:CDS
CTGCTGCTGCTGGTGGTGGC+AGG 0.150497 7_1:-11899062 Msa1009860:CDS
TTCATTATGTCGAAACAAAA+TGG 0.184081 7_1:-11898703 Msa1009860:CDS
CCCTTCTAGCCAAATCAATT+TGG 0.232010 7_1:+11898200 None:intergenic
GCTGGTGGTGGCAGGGGCAG+GGG 0.236351 7_1:-11899054 Msa1009860:CDS
TGCATATTCCTCCACTTTGC+TGG 0.309064 7_1:-11899013 Msa1009860:CDS
GCCAAATTGATTTGGCTAGA+AGG 0.313681 7_1:-11898201 Msa1009860:CDS
TCGGCCATGATTAGTGCTTT+TGG 0.314395 7_1:-11898550 Msa1009860:CDS
TGCTGCTGCTGGTGGTGGCA+GGG 0.315639 7_1:-11899061 Msa1009860:CDS
TGCTGGTGGTGGCAGGGGCA+GGG 0.328697 7_1:-11899055 Msa1009860:CDS
GCTGCTGCTGGTGGTGGCAG+GGG 0.332736 7_1:-11899060 Msa1009860:CDS
TACGCGGCCAAGATGCATTC+TGG 0.356042 7_1:-11898937 Msa1009860:CDS
GGGGAGATTAATCTTGCTTT+GGG 0.357886 7_1:-11898625 Msa1009860:CDS
GGTGGCAGGGGCAGGGGCAA+TGG 0.362795 7_1:-11899048 Msa1009860:CDS
AGGGGAGATTAATCTTGCTT+TGG 0.363967 7_1:-11898626 Msa1009860:CDS
GCACTGTAGGTCACCACATT+TGG 0.379121 7_1:+11898145 None:intergenic
GACCTCCTGCCAGAAAATTC+AGG 0.381782 7_1:+11898967 None:intergenic
GAGTAGTTTGGTGGAGGGGT+TGG 0.385564 7_1:+11899288 None:intergenic
TAAGGCAGGCCAAATTGATT+TGG 0.386084 7_1:-11898209 Msa1009860:intron
AGTGCTGCTGCTGCTGGTGG+TGG 0.386197 7_1:-11899066 Msa1009860:CDS
GAATTGTACGTTATCACATT+AGG 0.386349 7_1:+11898463 None:intergenic
TCATTGATGCTGGGGCGAAA+GGG 0.388367 7_1:-11898438 Msa1009860:CDS
AGGGGCAGGGGCAATGGCAG+AGG 0.394585 7_1:-11899042 Msa1009860:CDS
CTGAACAAATCCACGGCATC+GGG 0.395411 7_1:+11898511 None:intergenic
AGATGTCGTCAAAGAGAGTT+TGG 0.401434 7_1:-11898168 Msa1009860:CDS
AGTGGAAGTGCTGCTGCTGC+TGG 0.402136 7_1:-11899072 Msa1009860:CDS
TGAGGAGTAGTTTGGTGGAG+GGG 0.407911 7_1:+11899284 None:intergenic
GCAGGGAGTGAGGAGTAGTT+TGG 0.408509 7_1:+11899276 None:intergenic
GCACTGTGAGCATGTTTGTT+TGG 0.410917 7_1:+11898898 None:intergenic
CATCGGGGAAGCGCCCATTT+CGG 0.411707 7_1:+11898527 None:intergenic
CAAAATGGGAGGGTTGATAA+AGG 0.413662 7_1:-11898688 Msa1009860:CDS
CCTTTCTGTTTGCGCATCGA+AGG 0.423272 7_1:-11898329 Msa1009860:CDS
TTTGAAAGAGCTAGGCTTGA+AGG 0.425464 7_1:-11898598 Msa1009860:CDS
TGTTCAGGTCCATGAGTAGC+TGG 0.425595 7_1:-11898495 Msa1009860:intron
TGCTGGAGGGCAGGCAATCA+AGG 0.429090 7_1:-11898996 Msa1009860:CDS
ATCGAAGGGCATGTGGGAAA+TGG 0.430341 7_1:-11898314 Msa1009860:CDS
TACAATTCAATCATTGATGC+TGG 0.432368 7_1:-11898448 Msa1009860:CDS
GTGAGGAGTAGTTTGGTGGA+GGG 0.433158 7_1:+11899283 None:intergenic
ATCATTGATGCTGGGGCGAA+AGG 0.448222 7_1:-11898439 Msa1009860:CDS
CCTCCACTTTGCTGGAGGGC+AGG 0.452192 7_1:-11899005 Msa1009860:CDS
TGTGCATTTCTAGGAGTAGC+AGG 0.454704 7_1:+11899258 None:intergenic
TCATTATGTCGAAACAAAAT+GGG 0.464595 7_1:-11898702 Msa1009860:CDS
AGAGCTAGGCTTGAAGGGTA+TGG 0.483223 7_1:-11898592 Msa1009860:CDS
AGTGAGGAGTAGTTTGGTGG+AGG 0.484083 7_1:+11899282 None:intergenic
AGCACTAATCATGGCCGAAA+AGG 0.488580 7_1:+11898555 None:intergenic
TGTTTGTTTGGCGTCACCCT+CGG 0.490116 7_1:+11898910 None:intergenic
CTTTCTGTTTGCGCATCGAA+GGG 0.495145 7_1:-11898328 Msa1009860:CDS
GAATTGTAAGTAAGCCGATC+TGG 0.496260 7_1:+11898355 None:intergenic
GACGAAGACCAACGGTCTCT+AGG 0.498615 7_1:+11899168 None:intergenic
CCAAATTGATTTGGCTAGAA+GGG 0.499721 7_1:-11898200 Msa1009860:CDS
GCTGCGGCTGACGAGGCACT+TGG 0.501165 7_1:-11898877 Msa1009860:CDS
TAGGACGTTTATGAGTACTA+TGG 0.504186 7_1:+11899187 None:intergenic
GGGAGTGAGGAGTAGTTTGG+TGG 0.506229 7_1:+11899279 None:intergenic
TGGGCGCTTCCCCGATGCCG+TGG 0.511898 7_1:-11898521 Msa1009860:CDS
CACAACTCCCCAGCTACTCA+TGG 0.517367 7_1:+11898486 None:intergenic
ATATTCCTCCACTTTGCTGG+AGG 0.517843 7_1:-11899010 Msa1009860:CDS
TGGGATTGTTTGAAAGAGCT+AGG 0.521127 7_1:-11898606 Msa1009860:CDS
GTTCAGGTCCATGAGTAGCT+GGG 0.522519 7_1:-11898494 Msa1009860:intron
CGGCATTCCAGAATGCATCT+TGG 0.524738 7_1:+11898930 None:intergenic
GAAGTAGGTACCAATGGAAG+TGG 0.525331 7_1:-11899090 Msa1009860:intron
TATTCCTCCACTTTGCTGGA+GGG 0.527376 7_1:-11899009 Msa1009860:CDS
GGAAGTGCTGCTGCTGCTGG+TGG 0.528899 7_1:-11899069 Msa1009860:CDS
ACAATTCAATCATTGATGCT+GGG 0.529311 7_1:-11898447 Msa1009860:CDS
AGCAGCACTTCCACTTCCAT+TGG 0.531355 7_1:+11899080 None:intergenic
CTTGGCTGTCTGTTCAAAGC+TGG 0.541428 7_1:-11898859 Msa1009860:intron
TCGGCCAAAAGCACTAATCA+TGG 0.541479 7_1:+11898546 None:intergenic
GGAGGGCAGGCAATCAAGGT+TGG 0.543905 7_1:-11898992 Msa1009860:CDS
CATTGATGCTGGGGCGAAAG+GGG 0.544104 7_1:-11898437 Msa1009860:CDS
CCTGAACAAATCCACGGCAT+CGG 0.546111 7_1:+11898510 None:intergenic
TTGAAAGAGCTAGGCTTGAA+GGG 0.547653 7_1:-11898597 Msa1009860:CDS
TCACAGTGCTGCGGCTGACG+AGG 0.548183 7_1:-11898884 Msa1009860:CDS
TTCAGGTCCATGAGTAGCTG+GGG 0.555746 7_1:-11898493 Msa1009860:intron
CCAACGGCATAATGCCAGAT+CGG 0.572820 7_1:-11898369 Msa1009860:CDS
CCTTCGATGCGCAAACAGAA+AGG 0.574233 7_1:+11898329 None:intergenic
TTTGCGCATCGAAGGGCATG+TGG 0.576722 7_1:-11898321 Msa1009860:CDS
TCTAGGAGTAGCAGGGAGTG+AGG 0.582622 7_1:+11899266 None:intergenic
CCGATCTGGCATTATGCCGT+TGG 0.584083 7_1:+11898369 None:intergenic
TACGATGAAATGATAGCCAA+CGG 0.589466 7_1:-11898385 Msa1009860:CDS
GTGCATTTCTAGGAGTAGCA+GGG 0.590309 7_1:+11899259 None:intergenic
CAATTCAATCATTGATGCTG+GGG 0.590962 7_1:-11898446 Msa1009860:CDS
TTATGTCGAAACAAAATGGG+AGG 0.594963 7_1:-11898699 Msa1009860:CDS
GTTGCTGAAGTAGGTACCAA+TGG 0.602499 7_1:-11899096 Msa1009860:intron
CAGGAGGTCAACGCGGTACG+CGG 0.602960 7_1:-11898953 Msa1009860:CDS
AAAGAGAGTTTGGCCAAATG+TGG 0.608022 7_1:-11898158 Msa1009860:CDS
TATTGAGTGAAATGGACCAC+AGG 0.618682 7_1:-11898282 Msa1009860:CDS
TTGCCTGCCCTCCAGCAAAG+TGG 0.628894 7_1:+11899002 None:intergenic
AGATGCATTCTGGAATGCCG+AGG 0.632932 7_1:-11898927 Msa1009860:CDS
CCTGCCCTCCAGCAAAGTGG+AGG 0.634595 7_1:+11899005 None:intergenic
TGGCACTCTTGGTAGGTTAG+GGG 0.634687 7_1:-11898644 Msa1009860:intron
TATGTCGAAACAAAATGGGA+GGG 0.643664 7_1:-11898698 Msa1009860:CDS
GATGCATTCTGGAATGCCGA+GGG 0.647748 7_1:-11898926 Msa1009860:CDS
TTGCGCATCGAAGGGCATGT+GGG 0.648600 7_1:-11898320 Msa1009860:CDS
CATGGACCTGAACAAATCCA+CGG 0.687332 7_1:+11898504 None:intergenic
CAAACATGCTCACAGTGCTG+CGG 0.703611 7_1:-11898893 Msa1009860:CDS
TTTCTGGCAGGAGGTCAACG+CGG 0.711932 7_1:-11898960 Msa1009860:CDS
CATCGGGAACAATACGCCTG+TGG 0.722398 7_1:+11898266 None:intergenic
TGAACAAATCCACGGCATCG+GGG 0.747328 7_1:+11898512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATATGAACATAAGTTA+TGG - chr7_1:11898651-11898670 Msa1009860:intron 20.0%
!! TACATATGAACATAAGTTAT+GGG - chr7_1:11898652-11898671 Msa1009860:intron 20.0%
!! ATTTATATGCTAAAAGAGTT+TGG - chr7_1:11898689-11898708 Msa1009860:CDS 20.0%
!! TCAAAAATTATTGAGTGAAA+TGG - chr7_1:11899165-11899184 Msa1009860:intron 20.0%
!! GTTTACTTATAACACATATT+TGG - chr7_1:11899213-11899232 Msa1009860:CDS 20.0%
!! TTACATATGAACATAAGTTA+TGG - chr7_1:11898651-11898670 Msa1009860:intron 20.0%
!! TACATATGAACATAAGTTAT+GGG - chr7_1:11898652-11898671 Msa1009860:intron 20.0%
!! ATTTATATGCTAAAAGAGTT+TGG - chr7_1:11898689-11898708 Msa1009860:CDS 20.0%
!! TCAAAAATTATTGAGTGAAA+TGG - chr7_1:11899165-11899184 Msa1009860:intron 20.0%
!! GTTTACTTATAACACATATT+TGG - chr7_1:11899213-11899232 Msa1009860:CDS 20.0%
! TTCATTATGTCGAAACAAAA+TGG - chr7_1:11898752-11898771 Msa1009860:CDS 25.0%
! TCATTATGTCGAAACAAAAT+GGG - chr7_1:11898753-11898772 Msa1009860:CDS 25.0%
! TGTGTTATAAGTAAACACAT+CGG + chr7_1:11899209-11899228 None:intergenic 25.0%
! TTCATTATGTCGAAACAAAA+TGG - chr7_1:11898752-11898771 Msa1009860:CDS 25.0%
! TCATTATGTCGAAACAAAAT+GGG - chr7_1:11898753-11898772 Msa1009860:CDS 25.0%
! TGTGTTATAAGTAAACACAT+CGG + chr7_1:11899209-11899228 None:intergenic 25.0%
!!! TTATGGTTTTGTGCATTTCT+AGG + chr7_1:11898209-11898228 None:intergenic 30.0%
!! GATTTTGGTGATTGTGATTA+TGG + chr7_1:11898226-11898245 None:intergenic 30.0%
!!! GTCTACTGTTTTGTTGATTT+TGG + chr7_1:11898241-11898260 None:intergenic 30.0%
ATATGAACATAAGTTATGGG+AGG - chr7_1:11898655-11898674 Msa1009860:intron 30.0%
AAGTTAGTTAGTGCTATGAT+TGG - chr7_1:11898791-11898810 Msa1009860:intron 30.0%
GAATTGTACGTTATCACATT+AGG + chr7_1:11898995-11899014 None:intergenic 30.0%
TACAATTCAATCATTGATGC+TGG - chr7_1:11899007-11899026 Msa1009860:CDS 30.0%
ACAATTCAATCATTGATGCT+GGG - chr7_1:11899008-11899027 Msa1009860:CDS 30.0%
GTGTTATAAGTAAACACATC+GGG + chr7_1:11899208-11899227 None:intergenic 30.0%
!!! TTATGGTTTTGTGCATTTCT+AGG + chr7_1:11898209-11898228 None:intergenic 30.0%
!! GATTTTGGTGATTGTGATTA+TGG + chr7_1:11898226-11898245 None:intergenic 30.0%
!!! GTCTACTGTTTTGTTGATTT+TGG + chr7_1:11898241-11898260 None:intergenic 30.0%
ATATGAACATAAGTTATGGG+AGG - chr7_1:11898655-11898674 Msa1009860:intron 30.0%
AAGTTAGTTAGTGCTATGAT+TGG - chr7_1:11898791-11898810 Msa1009860:intron 30.0%
GAATTGTACGTTATCACATT+AGG + chr7_1:11898995-11899014 None:intergenic 30.0%
TACAATTCAATCATTGATGC+TGG - chr7_1:11899007-11899026 Msa1009860:CDS 30.0%
ACAATTCAATCATTGATGCT+GGG - chr7_1:11899008-11899027 Msa1009860:CDS 30.0%
GTGTTATAAGTAAACACATC+GGG + chr7_1:11899208-11899227 None:intergenic 30.0%
TAGGACGTTTATGAGTACTA+TGG + chr7_1:11898271-11898290 None:intergenic 35.0%
TTATGTCGAAACAAAATGGG+AGG - chr7_1:11898756-11898775 Msa1009860:intron 35.0%
TATGTCGAAACAAAATGGGA+GGG - chr7_1:11898757-11898776 Msa1009860:intron 35.0%
!! AAGCACTGTGTATTCCTTTT+CGG - chr7_1:11898886-11898905 Msa1009860:CDS 35.0%
CAATTCAATCATTGATGCTG+GGG - chr7_1:11899009-11899028 Msa1009860:CDS 35.0%
TACGATGAAATGATAGCCAA+CGG - chr7_1:11899070-11899089 Msa1009860:CDS 35.0%
ATATTTGGACACCTTGTGTA+AGG - chr7_1:11899228-11899247 Msa1009860:CDS 35.0%
!! CCAAATTGATTTGGCTAGAA+GGG - chr7_1:11899255-11899274 Msa1009860:CDS 35.0%
TAGGACGTTTATGAGTACTA+TGG + chr7_1:11898271-11898290 None:intergenic 35.0%
TTATGTCGAAACAAAATGGG+AGG - chr7_1:11898756-11898775 Msa1009860:intron 35.0%
TATGTCGAAACAAAATGGGA+GGG - chr7_1:11898757-11898776 Msa1009860:intron 35.0%
!! AAGCACTGTGTATTCCTTTT+CGG - chr7_1:11898886-11898905 Msa1009860:CDS 35.0%
CAATTCAATCATTGATGCTG+GGG - chr7_1:11899009-11899028 Msa1009860:CDS 35.0%
TACGATGAAATGATAGCCAA+CGG - chr7_1:11899070-11899089 Msa1009860:CDS 35.0%
ATATTTGGACACCTTGTGTA+AGG - chr7_1:11899228-11899247 Msa1009860:CDS 35.0%
!! CCAAATTGATTTGGCTAGAA+GGG - chr7_1:11899255-11899274 Msa1009860:CDS 35.0%
!! CAAAATGGGAGGGTTGATAA+AGG - chr7_1:11898767-11898786 Msa1009860:intron 40.0%
AGGGGAGATTAATCTTGCTT+TGG - chr7_1:11898829-11898848 Msa1009860:intron 40.0%
GGGGAGATTAATCTTGCTTT+GGG - chr7_1:11898830-11898849 Msa1009860:intron 40.0%
TGGGATTGTTTGAAAGAGCT+AGG - chr7_1:11898849-11898868 Msa1009860:intron 40.0%
TTTGAAAGAGCTAGGCTTGA+AGG - chr7_1:11898857-11898876 Msa1009860:intron 40.0%
TTGAAAGAGCTAGGCTTGAA+GGG - chr7_1:11898858-11898877 Msa1009860:intron 40.0%
! ATTAGTGCTTTTGGCCGAAA+TGG - chr7_1:11898914-11898933 Msa1009860:CDS 40.0%
! TTAGTGCTTTTGGCCGAAAT+GGG - chr7_1:11898915-11898934 Msa1009860:CDS 40.0%
GAATTGTAAGTAAGCCGATC+TGG + chr7_1:11899103-11899122 None:intergenic 40.0%
TATTGAGTGAAATGGACCAC+AGG - chr7_1:11899173-11899192 Msa1009860:intron 40.0%
TAAGGCAGGCCAAATTGATT+TGG - chr7_1:11899246-11899265 Msa1009860:CDS 40.0%
!! GCCAAATTGATTTGGCTAGA+AGG - chr7_1:11899254-11899273 Msa1009860:CDS 40.0%
CCCTTCTAGCCAAATCAATT+TGG + chr7_1:11899258-11899277 None:intergenic 40.0%
AGATGTCGTCAAAGAGAGTT+TGG - chr7_1:11899287-11899306 Msa1009860:CDS 40.0%
AAAGAGAGTTTGGCCAAATG+TGG - chr7_1:11899297-11899316 Msa1009860:CDS 40.0%
!! CAAAATGGGAGGGTTGATAA+AGG - chr7_1:11898767-11898786 Msa1009860:intron 40.0%
AGGGGAGATTAATCTTGCTT+TGG - chr7_1:11898829-11898848 Msa1009860:intron 40.0%
GGGGAGATTAATCTTGCTTT+GGG - chr7_1:11898830-11898849 Msa1009860:intron 40.0%
TGGGATTGTTTGAAAGAGCT+AGG - chr7_1:11898849-11898868 Msa1009860:intron 40.0%
TTTGAAAGAGCTAGGCTTGA+AGG - chr7_1:11898857-11898876 Msa1009860:intron 40.0%
TTGAAAGAGCTAGGCTTGAA+GGG - chr7_1:11898858-11898877 Msa1009860:intron 40.0%
! ATTAGTGCTTTTGGCCGAAA+TGG - chr7_1:11898914-11898933 Msa1009860:CDS 40.0%
! TTAGTGCTTTTGGCCGAAAT+GGG - chr7_1:11898915-11898934 Msa1009860:CDS 40.0%
GAATTGTAAGTAAGCCGATC+TGG + chr7_1:11899103-11899122 None:intergenic 40.0%
TATTGAGTGAAATGGACCAC+AGG - chr7_1:11899173-11899192 Msa1009860:intron 40.0%
TAAGGCAGGCCAAATTGATT+TGG - chr7_1:11899246-11899265 Msa1009860:CDS 40.0%
!! GCCAAATTGATTTGGCTAGA+AGG - chr7_1:11899254-11899273 Msa1009860:CDS 40.0%
CCCTTCTAGCCAAATCAATT+TGG + chr7_1:11899258-11899277 None:intergenic 40.0%
AGATGTCGTCAAAGAGAGTT+TGG - chr7_1:11899287-11899306 Msa1009860:CDS 40.0%
AAAGAGAGTTTGGCCAAATG+TGG - chr7_1:11899297-11899316 Msa1009860:CDS 40.0%
! GTGCATTTCTAGGAGTAGCA+GGG + chr7_1:11898199-11898218 None:intergenic 45.0%
! TGTGCATTTCTAGGAGTAGC+AGG + chr7_1:11898200-11898219 None:intergenic 45.0%
ATAAACGTCCTAGAGACCGT+TGG - chr7_1:11898279-11898298 Msa1009860:CDS 45.0%
GTTGCTGAAGTAGGTACCAA+TGG - chr7_1:11898359-11898378 Msa1009860:CDS 45.0%
GAAGTAGGTACCAATGGAAG+TGG - chr7_1:11898365-11898384 Msa1009860:CDS 45.0%
TGCATATTCCTCCACTTTGC+TGG - chr7_1:11898442-11898461 Msa1009860:CDS 45.0%
ATATTCCTCCACTTTGCTGG+AGG - chr7_1:11898445-11898464 Msa1009860:CDS 45.0%
TATTCCTCCACTTTGCTGGA+GGG - chr7_1:11898446-11898465 Msa1009860:CDS 45.0%
! AGGTTGGCACCTGAATTTTC+TGG - chr7_1:11898479-11898498 Msa1009860:CDS 45.0%
GCACTGTGAGCATGTTTGTT+TGG + chr7_1:11898560-11898579 None:intergenic 45.0%
AGTGCTATGATTGGCACTCT+TGG - chr7_1:11898800-11898819 Msa1009860:intron 45.0%
CTATGATTGGCACTCTTGGT+AGG - chr7_1:11898804-11898823 Msa1009860:intron 45.0%
ATTGGCACTCTTGGTAGGTT+AGG - chr7_1:11898809-11898828 Msa1009860:intron 45.0%
TTGGCACTCTTGGTAGGTTA+GGG - chr7_1:11898810-11898829 Msa1009860:intron 45.0%
AGCACTAATCATGGCCGAAA+AGG + chr7_1:11898903-11898922 None:intergenic 45.0%
! TCGGCCATGATTAGTGCTTT+TGG - chr7_1:11898905-11898924 Msa1009860:CDS 45.0%
!! TCGGCCAAAAGCACTAATCA+TGG + chr7_1:11898912-11898931 None:intergenic 45.0%
CATGGACCTGAACAAATCCA+CGG + chr7_1:11898954-11898973 None:intergenic 45.0%
CTTTCTGTTTGCGCATCGAA+GGG - chr7_1:11899127-11899146 Msa1009860:intron 45.0%
AATTTGGCCTGCCTTACACA+AGG + chr7_1:11899242-11899261 None:intergenic 45.0%
! GTGCATTTCTAGGAGTAGCA+GGG + chr7_1:11898199-11898218 None:intergenic 45.0%
! TGTGCATTTCTAGGAGTAGC+AGG + chr7_1:11898200-11898219 None:intergenic 45.0%
ATAAACGTCCTAGAGACCGT+TGG - chr7_1:11898279-11898298 Msa1009860:CDS 45.0%
GTTGCTGAAGTAGGTACCAA+TGG - chr7_1:11898359-11898378 Msa1009860:CDS 45.0%
GAAGTAGGTACCAATGGAAG+TGG - chr7_1:11898365-11898384 Msa1009860:CDS 45.0%
TGCATATTCCTCCACTTTGC+TGG - chr7_1:11898442-11898461 Msa1009860:CDS 45.0%
ATATTCCTCCACTTTGCTGG+AGG - chr7_1:11898445-11898464 Msa1009860:CDS 45.0%
TATTCCTCCACTTTGCTGGA+GGG - chr7_1:11898446-11898465 Msa1009860:CDS 45.0%
! AGGTTGGCACCTGAATTTTC+TGG - chr7_1:11898479-11898498 Msa1009860:CDS 45.0%
GCACTGTGAGCATGTTTGTT+TGG + chr7_1:11898560-11898579 None:intergenic 45.0%
AGTGCTATGATTGGCACTCT+TGG - chr7_1:11898800-11898819 Msa1009860:intron 45.0%
CTATGATTGGCACTCTTGGT+AGG - chr7_1:11898804-11898823 Msa1009860:intron 45.0%
ATTGGCACTCTTGGTAGGTT+AGG - chr7_1:11898809-11898828 Msa1009860:intron 45.0%
TTGGCACTCTTGGTAGGTTA+GGG - chr7_1:11898810-11898829 Msa1009860:intron 45.0%
AGCACTAATCATGGCCGAAA+AGG + chr7_1:11898903-11898922 None:intergenic 45.0%
! TCGGCCATGATTAGTGCTTT+TGG - chr7_1:11898905-11898924 Msa1009860:CDS 45.0%
!! TCGGCCAAAAGCACTAATCA+TGG + chr7_1:11898912-11898931 None:intergenic 45.0%
CATGGACCTGAACAAATCCA+CGG + chr7_1:11898954-11898973 None:intergenic 45.0%
CTTTCTGTTTGCGCATCGAA+GGG - chr7_1:11899127-11899146 Msa1009860:intron 45.0%
AATTTGGCCTGCCTTACACA+AGG + chr7_1:11899242-11899261 None:intergenic 45.0%
! TGAGGAGTAGTTTGGTGGAG+GGG + chr7_1:11898174-11898193 None:intergenic 50.0%
! GTGAGGAGTAGTTTGGTGGA+GGG + chr7_1:11898175-11898194 None:intergenic 50.0%
! AGTGAGGAGTAGTTTGGTGG+AGG + chr7_1:11898176-11898195 None:intergenic 50.0%
TGAGGTGGAATAGTGCCTAG+AGG + chr7_1:11898312-11898331 None:intergenic 50.0%
AGCAGCACTTCCACTTCCAT+TGG + chr7_1:11898378-11898397 None:intergenic 50.0%
!! TGGCACCTGAATTTTCTGGC+AGG - chr7_1:11898483-11898502 Msa1009860:CDS 50.0%
!! CACCTGAATTTTCTGGCAGG+AGG - chr7_1:11898486-11898505 Msa1009860:CDS 50.0%
GACCTCCTGCCAGAAAATTC+AGG + chr7_1:11898491-11898510 None:intergenic 50.0%
CGGCATTCCAGAATGCATCT+TGG + chr7_1:11898528-11898547 None:intergenic 50.0%
!! AGATGCATTCTGGAATGCCG+AGG - chr7_1:11898528-11898547 Msa1009860:CDS 50.0%
!! GATGCATTCTGGAATGCCGA+GGG - chr7_1:11898529-11898548 Msa1009860:CDS 50.0%
TGTTTGTTTGGCGTCACCCT+CGG + chr7_1:11898548-11898567 None:intergenic 50.0%
CAAACATGCTCACAGTGCTG+CGG - chr7_1:11898562-11898581 Msa1009860:CDS 50.0%
CTTGGCTGTCTGTTCAAAGC+TGG - chr7_1:11898596-11898615 Msa1009860:CDS 50.0%
TGGCACTCTTGGTAGGTTAG+GGG - chr7_1:11898811-11898830 Msa1009860:intron 50.0%
AGAGCTAGGCTTGAAGGGTA+TGG - chr7_1:11898863-11898882 Msa1009860:CDS 50.0%
TGAACAAATCCACGGCATCG+GGG + chr7_1:11898946-11898965 None:intergenic 50.0%
CTGAACAAATCCACGGCATC+GGG + chr7_1:11898947-11898966 None:intergenic 50.0%
CCTGAACAAATCCACGGCAT+CGG + chr7_1:11898948-11898967 None:intergenic 50.0%
TGTTCAGGTCCATGAGTAGC+TGG - chr7_1:11898960-11898979 Msa1009860:CDS 50.0%
GTTCAGGTCCATGAGTAGCT+GGG - chr7_1:11898961-11898980 Msa1009860:CDS 50.0%
TTCAGGTCCATGAGTAGCTG+GGG - chr7_1:11898962-11898981 Msa1009860:CDS 50.0%
ATCATTGATGCTGGGGCGAA+AGG - chr7_1:11899016-11899035 Msa1009860:CDS 50.0%
TCATTGATGCTGGGGCGAAA+GGG - chr7_1:11899017-11899036 Msa1009860:CDS 50.0%
CCAACGGCATAATGCCAGAT+CGG - chr7_1:11899086-11899105 Msa1009860:CDS 50.0%
CCTTCGATGCGCAAACAGAA+AGG + chr7_1:11899129-11899148 None:intergenic 50.0%
CCTTTCTGTTTGCGCATCGA+AGG - chr7_1:11899126-11899145 Msa1009860:intron 50.0%
! ATCGAAGGGCATGTGGGAAA+TGG - chr7_1:11899141-11899160 Msa1009860:intron 50.0%
TTGGACACCTTGTGTAAGGC+AGG - chr7_1:11899232-11899251 Msa1009860:CDS 50.0%
! TGAGGAGTAGTTTGGTGGAG+GGG + chr7_1:11898174-11898193 None:intergenic 50.0%
! GTGAGGAGTAGTTTGGTGGA+GGG + chr7_1:11898175-11898194 None:intergenic 50.0%
! AGTGAGGAGTAGTTTGGTGG+AGG + chr7_1:11898176-11898195 None:intergenic 50.0%
TGAGGTGGAATAGTGCCTAG+AGG + chr7_1:11898312-11898331 None:intergenic 50.0%
AGCAGCACTTCCACTTCCAT+TGG + chr7_1:11898378-11898397 None:intergenic 50.0%
!! TGGCACCTGAATTTTCTGGC+AGG - chr7_1:11898483-11898502 Msa1009860:CDS 50.0%
!! CACCTGAATTTTCTGGCAGG+AGG - chr7_1:11898486-11898505 Msa1009860:CDS 50.0%
GACCTCCTGCCAGAAAATTC+AGG + chr7_1:11898491-11898510 None:intergenic 50.0%
CGGCATTCCAGAATGCATCT+TGG + chr7_1:11898528-11898547 None:intergenic 50.0%
!! AGATGCATTCTGGAATGCCG+AGG - chr7_1:11898528-11898547 Msa1009860:CDS 50.0%
!! GATGCATTCTGGAATGCCGA+GGG - chr7_1:11898529-11898548 Msa1009860:CDS 50.0%
TGTTTGTTTGGCGTCACCCT+CGG + chr7_1:11898548-11898567 None:intergenic 50.0%
CAAACATGCTCACAGTGCTG+CGG - chr7_1:11898562-11898581 Msa1009860:CDS 50.0%
CTTGGCTGTCTGTTCAAAGC+TGG - chr7_1:11898596-11898615 Msa1009860:CDS 50.0%
TGGCACTCTTGGTAGGTTAG+GGG - chr7_1:11898811-11898830 Msa1009860:intron 50.0%
AGAGCTAGGCTTGAAGGGTA+TGG - chr7_1:11898863-11898882 Msa1009860:CDS 50.0%
TGAACAAATCCACGGCATCG+GGG + chr7_1:11898946-11898965 None:intergenic 50.0%
CTGAACAAATCCACGGCATC+GGG + chr7_1:11898947-11898966 None:intergenic 50.0%
CCTGAACAAATCCACGGCAT+CGG + chr7_1:11898948-11898967 None:intergenic 50.0%
TGTTCAGGTCCATGAGTAGC+TGG - chr7_1:11898960-11898979 Msa1009860:CDS 50.0%
GTTCAGGTCCATGAGTAGCT+GGG - chr7_1:11898961-11898980 Msa1009860:CDS 50.0%
TTCAGGTCCATGAGTAGCTG+GGG - chr7_1:11898962-11898981 Msa1009860:CDS 50.0%
ATCATTGATGCTGGGGCGAA+AGG - chr7_1:11899016-11899035 Msa1009860:CDS 50.0%
TCATTGATGCTGGGGCGAAA+GGG - chr7_1:11899017-11899036 Msa1009860:CDS 50.0%
CCAACGGCATAATGCCAGAT+CGG - chr7_1:11899086-11899105 Msa1009860:CDS 50.0%
CCTTCGATGCGCAAACAGAA+AGG + chr7_1:11899129-11899148 None:intergenic 50.0%
CCTTTCTGTTTGCGCATCGA+AGG - chr7_1:11899126-11899145 Msa1009860:intron 50.0%
! ATCGAAGGGCATGTGGGAAA+TGG - chr7_1:11899141-11899160 Msa1009860:intron 50.0%
TTGGACACCTTGTGTAAGGC+AGG - chr7_1:11899232-11899251 Msa1009860:CDS 50.0%
! GAGTAGTTTGGTGGAGGGGT+TGG + chr7_1:11898170-11898189 None:intergenic 55.0%
GGGAGTGAGGAGTAGTTTGG+TGG + chr7_1:11898179-11898198 None:intergenic 55.0%
GCAGGGAGTGAGGAGTAGTT+TGG + chr7_1:11898182-11898201 None:intergenic 55.0%
TCTAGGAGTAGCAGGGAGTG+AGG + chr7_1:11898192-11898211 None:intergenic 55.0%
GACGAAGACCAACGGTCTCT+AGG + chr7_1:11898290-11898309 None:intergenic 55.0%
!! ACCGTTGGTCTTCGTCCTCT+AGG - chr7_1:11898294-11898313 Msa1009860:CDS 55.0%
GCCTAGAGGACGAAGACCAA+CGG + chr7_1:11898298-11898317 None:intergenic 55.0%
TACAGGTGCAGAGTGTGAGG+TGG + chr7_1:11898327-11898346 None:intergenic 55.0%
AGCTACAGGTGCAGAGTGTG+AGG + chr7_1:11898330-11898349 None:intergenic 55.0%
GCTGCTGCTGTTGCTGAAGT+AGG - chr7_1:11898350-11898369 Msa1009860:CDS 55.0%
! TTTCTGGCAGGAGGTCAACG+CGG - chr7_1:11898495-11898514 Msa1009860:intron 55.0%
TACGCGGCCAAGATGCATTC+TGG - chr7_1:11898518-11898537 Msa1009860:CDS 55.0%
! CCGATGCCGTGGATTTGTTC+AGG - chr7_1:11898945-11898964 Msa1009860:CDS 55.0%
CACAACTCCCCAGCTACTCA+TGG + chr7_1:11898972-11898991 None:intergenic 55.0%
CATTGATGCTGGGGCGAAAG+GGG - chr7_1:11899018-11899037 Msa1009860:CDS 55.0%
CCGATCTGGCATTATGCCGT+TGG + chr7_1:11899089-11899108 None:intergenic 55.0%
! TTTGCGCATCGAAGGGCATG+TGG - chr7_1:11899134-11899153 Msa1009860:intron 55.0%
! TTGCGCATCGAAGGGCATGT+GGG - chr7_1:11899135-11899154 Msa1009860:intron 55.0%
CATCGGGAACAATACGCCTG+TGG + chr7_1:11899192-11899211 None:intergenic 55.0%
! GAGTAGTTTGGTGGAGGGGT+TGG + chr7_1:11898170-11898189 None:intergenic 55.0%
GGGAGTGAGGAGTAGTTTGG+TGG + chr7_1:11898179-11898198 None:intergenic 55.0%
GCAGGGAGTGAGGAGTAGTT+TGG + chr7_1:11898182-11898201 None:intergenic 55.0%
TCTAGGAGTAGCAGGGAGTG+AGG + chr7_1:11898192-11898211 None:intergenic 55.0%
GACGAAGACCAACGGTCTCT+AGG + chr7_1:11898290-11898309 None:intergenic 55.0%
!! ACCGTTGGTCTTCGTCCTCT+AGG - chr7_1:11898294-11898313 Msa1009860:CDS 55.0%
GCCTAGAGGACGAAGACCAA+CGG + chr7_1:11898298-11898317 None:intergenic 55.0%
TACAGGTGCAGAGTGTGAGG+TGG + chr7_1:11898327-11898346 None:intergenic 55.0%
AGCTACAGGTGCAGAGTGTG+AGG + chr7_1:11898330-11898349 None:intergenic 55.0%
GCTGCTGCTGTTGCTGAAGT+AGG - chr7_1:11898350-11898369 Msa1009860:CDS 55.0%
! TTTCTGGCAGGAGGTCAACG+CGG - chr7_1:11898495-11898514 Msa1009860:intron 55.0%
TACGCGGCCAAGATGCATTC+TGG - chr7_1:11898518-11898537 Msa1009860:CDS 55.0%
! CCGATGCCGTGGATTTGTTC+AGG - chr7_1:11898945-11898964 Msa1009860:CDS 55.0%
CACAACTCCCCAGCTACTCA+TGG + chr7_1:11898972-11898991 None:intergenic 55.0%
CATTGATGCTGGGGCGAAAG+GGG - chr7_1:11899018-11899037 Msa1009860:CDS 55.0%
CCGATCTGGCATTATGCCGT+TGG + chr7_1:11899089-11899108 None:intergenic 55.0%
! TTTGCGCATCGAAGGGCATG+TGG - chr7_1:11899134-11899153 Msa1009860:intron 55.0%
! TTGCGCATCGAAGGGCATGT+GGG - chr7_1:11899135-11899154 Msa1009860:intron 55.0%
CATCGGGAACAATACGCCTG+TGG + chr7_1:11899192-11899211 None:intergenic 55.0%
GCAACAGCAGCAGCAGCTAC+AGG + chr7_1:11898344-11898363 None:intergenic 60.0%
!! AGTGGAAGTGCTGCTGCTGC+TGG - chr7_1:11898383-11898402 Msa1009860:CDS 60.0%
TTGCCTGCCCTCCAGCAAAG+TGG + chr7_1:11898456-11898475 None:intergenic 60.0%
TGCTGGAGGGCAGGCAATCA+AGG - chr7_1:11898459-11898478 Msa1009860:CDS 60.0%
GGAGGGCAGGCAATCAAGGT+TGG - chr7_1:11898463-11898482 Msa1009860:CDS 60.0%
!! CATCGGGGAAGCGCCCATTT+CGG + chr7_1:11898931-11898950 None:intergenic 60.0%
GCAACAGCAGCAGCAGCTAC+AGG + chr7_1:11898344-11898363 None:intergenic 60.0%
!! AGTGGAAGTGCTGCTGCTGC+TGG - chr7_1:11898383-11898402 Msa1009860:CDS 60.0%
TTGCCTGCCCTCCAGCAAAG+TGG + chr7_1:11898456-11898475 None:intergenic 60.0%
TGCTGGAGGGCAGGCAATCA+AGG - chr7_1:11898459-11898478 Msa1009860:CDS 60.0%
GGAGGGCAGGCAATCAAGGT+TGG - chr7_1:11898463-11898482 Msa1009860:CDS 60.0%
!! CATCGGGGAAGCGCCCATTT+CGG + chr7_1:11898931-11898950 None:intergenic 60.0%
!! GGAAGTGCTGCTGCTGCTGG+TGG - chr7_1:11898386-11898405 Msa1009860:CDS 65.0%
! AGTGCTGCTGCTGCTGGTGG+TGG - chr7_1:11898389-11898408 Msa1009860:CDS 65.0%
!! TGCTGCTGCTGGTGGTGGCA+GGG - chr7_1:11898394-11898413 Msa1009860:CDS 65.0%
CCTGCCCTCCAGCAAAGTGG+AGG + chr7_1:11898453-11898472 None:intergenic 65.0%
CCTCCACTTTGCTGGAGGGC+AGG - chr7_1:11898450-11898469 Msa1009860:CDS 65.0%
CAGGAGGTCAACGCGGTACG+CGG - chr7_1:11898502-11898521 Msa1009860:intron 65.0%
TCACAGTGCTGCGGCTGACG+AGG - chr7_1:11898571-11898590 Msa1009860:CDS 65.0%
!! GGAAGTGCTGCTGCTGCTGG+TGG - chr7_1:11898386-11898405 Msa1009860:CDS 65.0%
! AGTGCTGCTGCTGCTGGTGG+TGG - chr7_1:11898389-11898408 Msa1009860:CDS 65.0%
!! TGCTGCTGCTGGTGGTGGCA+GGG - chr7_1:11898394-11898413 Msa1009860:CDS 65.0%
CCTGCCCTCCAGCAAAGTGG+AGG + chr7_1:11898453-11898472 None:intergenic 65.0%
CCTCCACTTTGCTGGAGGGC+AGG - chr7_1:11898450-11898469 Msa1009860:CDS 65.0%
CAGGAGGTCAACGCGGTACG+CGG - chr7_1:11898502-11898521 Msa1009860:intron 65.0%
TCACAGTGCTGCGGCTGACG+AGG - chr7_1:11898571-11898590 Msa1009860:CDS 65.0%
!! CTGCTGCTGCTGGTGGTGGC+AGG - chr7_1:11898393-11898412 Msa1009860:CDS 70.0%
!! GCTGCTGCTGGTGGTGGCAG+GGG - chr7_1:11898395-11898414 Msa1009860:CDS 70.0%
!! TGCTGGTGGTGGCAGGGGCA+GGG - chr7_1:11898400-11898419 Msa1009860:CDS 70.0%
AGGGGCAGGGGCAATGGCAG+AGG - chr7_1:11898413-11898432 Msa1009860:CDS 70.0%
! GCTGCGGCTGACGAGGCACT+TGG - chr7_1:11898578-11898597 Msa1009860:CDS 70.0%
!! CTGCTGCTGCTGGTGGTGGC+AGG - chr7_1:11898393-11898412 Msa1009860:CDS 70.0%
!! GCTGCTGCTGGTGGTGGCAG+GGG - chr7_1:11898395-11898414 Msa1009860:CDS 70.0%
!! TGCTGGTGGTGGCAGGGGCA+GGG - chr7_1:11898400-11898419 Msa1009860:CDS 70.0%
AGGGGCAGGGGCAATGGCAG+AGG - chr7_1:11898413-11898432 Msa1009860:CDS 70.0%
! GCTGCGGCTGACGAGGCACT+TGG - chr7_1:11898578-11898597 Msa1009860:CDS 70.0%
!! CTGCTGGTGGTGGCAGGGGC+AGG - chr7_1:11898399-11898418 Msa1009860:CDS 75.0%
!! GCTGGTGGTGGCAGGGGCAG+GGG - chr7_1:11898401-11898420 Msa1009860:CDS 75.0%
GGTGGCAGGGGCAGGGGCAA+TGG - chr7_1:11898407-11898426 Msa1009860:CDS 75.0%
TGGGCGCTTCCCCGATGCCG+TGG - chr7_1:11898934-11898953 Msa1009860:CDS 75.0%
!! CTGCTGGTGGTGGCAGGGGC+AGG - chr7_1:11898399-11898418 Msa1009860:CDS 75.0%
!! GCTGGTGGTGGCAGGGGCAG+GGG - chr7_1:11898401-11898420 Msa1009860:CDS 75.0%
GGTGGCAGGGGCAGGGGCAA+TGG - chr7_1:11898407-11898426 Msa1009860:CDS 75.0%
TGGGCGCTTCCCCGATGCCG+TGG - chr7_1:11898934-11898953 Msa1009860:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 11898155 11899322 11898155 ID=Msa1009860;Name=Msa1009860
chr7_1 mRNA 11898155 11899322 11898155 ID=Msa1009860-mRNA-1;Parent=Msa1009860;Name=Msa1009860-mRNA-1;_AED=0.43;_eAED=0.47;_QI=0|0|0|1|0|0|6|0|307
chr7_1 exon 11899181 11899322 11899181 ID=Msa1009860-mRNA-1:exon:3181;Parent=Msa1009860-mRNA-1
chr7_1 exon 11898860 11899105 11898860 ID=Msa1009860-mRNA-1:exon:3180;Parent=Msa1009860-mRNA-1
chr7_1 exon 11898685 11898772 11898685 ID=Msa1009860-mRNA-1:exon:3179;Parent=Msa1009860-mRNA-1
chr7_1 exon 11898517 11898651 11898517 ID=Msa1009860-mRNA-1:exon:3178;Parent=Msa1009860-mRNA-1
chr7_1 exon 11898267 11898510 11898267 ID=Msa1009860-mRNA-1:exon:3177;Parent=Msa1009860-mRNA-1
chr7_1 exon 11898155 11898223 11898155 ID=Msa1009860-mRNA-1:exon:3176;Parent=Msa1009860-mRNA-1
chr7_1 CDS 11899181 11899322 11899181 ID=Msa1009860-mRNA-1:cds;Parent=Msa1009860-mRNA-1
chr7_1 CDS 11898860 11899105 11898860 ID=Msa1009860-mRNA-1:cds;Parent=Msa1009860-mRNA-1
chr7_1 CDS 11898685 11898772 11898685 ID=Msa1009860-mRNA-1:cds;Parent=Msa1009860-mRNA-1
chr7_1 CDS 11898517 11898651 11898517 ID=Msa1009860-mRNA-1:cds;Parent=Msa1009860-mRNA-1
chr7_1 CDS 11898267 11898510 11898267 ID=Msa1009860-mRNA-1:cds;Parent=Msa1009860-mRNA-1
chr7_1 CDS 11898155 11898223 11898155 ID=Msa1009860-mRNA-1:cds;Parent=Msa1009860-mRNA-1
Gene Sequence

>Msa1009860

ATGACTTCTACACCAACCCCTCCACCAAACTACTCCTCACTCCCTGCTACTCCTAGAAATGCACAAAACCATAATCACAATCACCAAAATCAACAAAACAGTAGACATAGTCACCATAGTACTCATAAACGTCCTAGAGACCGTACCAATGGAAGTGGAAGTGCTGCTGCTGCTGGTGGTGGCAGGGGCAGGGGCAATGGCAGAGGCAGAGCTGCATATTCCTCCACTTTGCTGGAGGGCAGGCAATCAAGGTTGGCACCTGAATTTTCTGGCAGGAGGTCAACGCGGTACGCGGCCAAGATGCATTCTGGAATGCCGAGGGTGACGCCAAACAAACATGCTCACAGTGCTGCGGCTGACGAGGCACTTGGCTGTCTGTTCAAAGCTGAGTTTGGTAATACTCGTAGTCTTTTGCATGCTACAAAGTGTTTTGATTTCATTATGTCGAAACAAAATGGGAGGGTTGATAAAGGCAAGTTAGGGGAGATTAATCTTGCTTTGGGATTGTTTGAAAGAGCTAGGCTTGAAGGGTATGGAAGCACTGTGTATTCCTTTTCGGCCATGATTAGTGCTTTTGGCCGAAATGGGCGCTTCCCCGATGCCGTGGATTTGTCCATGAGTAGCTGGGGAGTTGTGCCTAATGTGATAACGTACAATTCAATCATTGATGCTGGGGCGAAAGGGGAAGTGAGTTTTGATGTAGTCGTTAAGTTTTACGATGAAATGATAGCCAACGGCATAATGCCAGATCGGCTTACTTACAATTCACTCCTTTCTGTTTGCGCATCGAAGGGCATGTGGGAAATGGCTCAAAAATTATTGAGTGAAATGGACCACAGGCGTATTGTTCCCGATGCCAAATTGATTTGGCTAGAAGGGTATTCGAAGAGATGTCGTCAAAGAGAGTTTGGCCAAATGTGGTGA

Protein sequence

>Msa1009860

MTSTPTPPPNYSSLPATPRNAQNHNHNHQNQQNSRHSHHSTHKRPRDRTNGSGSAAAAGGGRGRGNGRGRAAYSSTLLEGRQSRLAPEFSGRRSTRYAAKMHSGMPRVTPNKHAHSAAADEALGCLFKAEFGNTRSLLHATKCFDFIMSKQNGRVDKGKLGEINLALGLFERARLEGYGSTVYSFSAMISAFGRNGRFPDAVDLSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGIMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRRIVPDAKLIWLEGYSKRCRQREFGQMW*