AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136300 MtrunA17_Chr1g0207651 90.979 388 6 1 20 407 21 379 0.0 706
Msa0136300 MtrunA17_Chr6g0451961 33.170 407 200 12 1 392 6 355 6.96e-50 172
Msa0136300 MtrunA17_Chr3g0143831 37.624 101 61 1 48 146 65 165 2.93e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136300 AT2G14910.1 60.857 350 101 4 54 403 71 384 7.60e-134 389
Msa0136300 AT2G14910.2 58.544 316 97 2 54 369 71 352 3.71e-115 341
Msa0136300 AT5G14970.1 35.128 390 189 9 13 392 19 354 2.56e-52 179
Msa0136300 AT1G63610.1 24.625 333 161 9 59 391 84 326 4.88e-17 82.0
Msa0136300 AT1G63610.3 37.500 88 55 0 59 146 84 171 8.70e-14 69.7
Msa0136300 AT1G63610.2 37.500 88 55 0 59 146 84 171 3.79e-13 69.3

Find 138 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGCCCGCCTGCTCTTT+TGG 0.245314 1_3:+68145523 Msa0136300:CDS
CTTCTTCTTCCCTTCTCTTT+CGG 0.254566 1_3:-68142077 None:intergenic
TTTGTAGAAATCTGCTTTAT+CGG 0.259410 1_3:+68142501 Msa0136300:intron
GAAGCTCAAGAATATATTTC+TGG 0.271936 1_3:+68143695 Msa0136300:CDS
GCTATGAAAAGGACCATTTC+TGG 0.273572 1_3:+68142595 Msa0136300:CDS
GCGGTTGGCATTGCTGTTGC+TGG 0.276572 1_3:+68146098 Msa0136300:three_prime_UTR
AGAAGAAAAGAATGATTTAC+TGG 0.277554 1_3:+68144446 Msa0136300:CDS
TCCCGAGTTAATGATATAAA+AGG 0.301606 1_3:-68145498 None:intergenic
GAGGGCTTTGAATGCATCTT+AGG 0.310216 1_3:-68145384 None:intergenic
AAGACAAAATACTGCTTTCA+TGG 0.313412 1_3:+68146024 Msa0136300:three_prime_UTR
AGGAAGAGAGGAGGAGGAGG+AGG 0.330947 1_3:-68142199 None:intergenic
CTTCAAATGCAGCAATTTGT+TGG 0.343190 1_3:+68144423 Msa0136300:CDS
TGGAGCCTTTGGACCAATCT+TGG 0.344284 1_3:+68141954 Msa0136300:five_prime_UTR
ATTTACATCCCCTGAGCTTA+AGG 0.344914 1_3:+68145317 Msa0136300:CDS
TGCTGAGTATAGGCTTTGTT+TGG 0.347450 1_3:+68143484 Msa0136300:CDS
AGGACCATTTCTGGTATGTT+GGG 0.354983 1_3:+68142604 Msa0136300:CDS
AACCTGACTAGTTGGAAGTT+TGG 0.362682 1_3:+68141886 Msa0136300:five_prime_UTR
GAGAGGAAGAGAGGAGGAGG+AGG 0.372062 1_3:-68142202 None:intergenic
CACATCCATCGTGGAGCCTT+TGG 0.372632 1_3:+68141943 Msa0136300:five_prime_UTR
AACTTAGTACTTTCTGCCTT+CGG 0.377112 1_3:-68143545 None:intergenic
TCCTTTAGAAGTGTCCAAAA+AGG 0.380305 1_3:-68144369 None:intergenic
GGAGGAGGAGAAGGAGAGAA+TGG 0.386794 1_3:-68142184 None:intergenic
CTCATTTCTTCAATGATGAC+TGG 0.387115 1_3:+68142691 Msa0136300:CDS
CCCTCGAAGGTGCATGCTGT+TGG 0.406060 1_3:+68145762 Msa0136300:intron
GAGATCGCTTCAACCTGAAC+AGG 0.407417 1_3:+68144476 Msa0136300:CDS
ACAAAAGGCAAAACCTGTTC+AGG 0.409693 1_3:-68144489 None:intergenic
CTGTTGGGACACTATCTTAG+AGG 0.422319 1_3:+68145778 Msa0136300:CDS
AAGCTCAGGGGATGTAAATT+CGG 0.424523 1_3:-68145313 None:intergenic
TGAATATTACTCACATCTAA+AGG 0.427179 1_3:-68142544 None:intergenic
CCTCGAAGGTGCATGCTGTT+GGG 0.434431 1_3:+68145763 Msa0136300:intron
GAAGGAGAGAATGGAGGGAA+GGG 0.436348 1_3:-68142175 None:intergenic
CAACCCCAACATACCAGAAA+TGG 0.436781 1_3:-68142608 None:intergenic
GAAGAGAAAGAGAAAGGTGT+TGG 0.440010 1_3:+68142112 Msa0136300:five_prime_UTR
TTTATCAGTTCTTCATTGCT+AGG 0.440528 1_3:-68146273 None:intergenic
GAGGAGAAGGAGAGAATGGA+GGG 0.442603 1_3:-68142180 None:intergenic
CCTTGAGTATCGAATGGAAT+TGG 0.442917 1_3:+68145801 Msa0136300:CDS
CATTGAAGAAATGAGTAACT+TGG 0.446046 1_3:-68142683 None:intergenic
TTCATAGCATCAGCTGTAGT+TGG 0.452605 1_3:-68142580 None:intergenic
TTCCAAACTTCCAACTAGTC+AGG 0.455928 1_3:-68141888 None:intergenic
CAGTTATCTCAATTGCAGTT+AGG 0.460863 1_3:+68144300 Msa0136300:intron
TTGAATGCATCTTAGGAGAA+AGG 0.461924 1_3:-68145377 None:intergenic
ATGTCGTTGTTGAGGCTTTG+TGG 0.462573 1_3:+68142650 Msa0136300:CDS
AACTTCCAACTAGTCAGGTT+AGG 0.467223 1_3:-68141883 None:intergenic
ATGGAGAGGAAGAGAGGAGG+AGG 0.467307 1_3:-68142205 None:intergenic
AAGGACCATTTCTGGTATGT+TGG 0.467555 1_3:+68142603 Msa0136300:CDS
TGTCGTTGTTGAGGCTTTGT+GGG 0.467846 1_3:+68142651 Msa0136300:CDS
GGAGGAGAAGGAGAGAATGG+AGG 0.468067 1_3:-68142181 None:intergenic
CGGCAGAAGCGACTAAAACT+TGG 0.470305 1_3:-68145980 None:intergenic
AGAAATATATTCTTGAGCTT+CGG 0.472669 1_3:-68143693 None:intergenic
ACTCTTCAATCAGTGTATAG+AGG 0.473717 1_3:+68145906 Msa0136300:three_prime_UTR
AAGAGAAAGAGAAAGGTGTT+GGG 0.476294 1_3:+68142113 Msa0136300:five_prime_UTR
GAGAAAGAGAAGGAAGGAGA+GGG 0.482114 1_3:-68142237 None:intergenic
CATAATCTCTTCGTGTTGAA+AGG 0.482634 1_3:-68145950 None:intergenic
GTGGATATGTCTTCCAAGAT+TGG 0.485651 1_3:-68141967 None:intergenic
GCAGAAGCGAGAACAAGAAA+GGG 0.487309 1_3:-68142294 None:intergenic
TTGGAATCTGTTAGCCGACT+AGG 0.487584 1_3:+68141905 Msa0136300:five_prime_UTR
TGCAGAAGCGAGAACAAGAA+AGG 0.488121 1_3:-68142295 None:intergenic
AGGATGATGTCCTTAAGCTC+AGG 0.490001 1_3:-68145327 None:intergenic
AACACCCACAATTATTATTG+TGG 0.492591 1_3:+68142032 Msa0136300:five_prime_UTR
CATTGCGCAATGCTGAGTAT+AGG 0.493261 1_3:+68143474 Msa0136300:CDS
ACAGTTGGATCAGCAAATGC+TGG 0.494546 1_3:+68145426 Msa0136300:CDS
AGAGAAAGAGAAGGAAGGAG+AGG 0.495517 1_3:-68142238 None:intergenic
GGTAAAGTCGTTGGAGGAGT+GGG 0.495967 1_3:-68142319 None:intergenic
AGAAGGAGAGAATGGAGGGA+AGG 0.499981 1_3:-68142176 None:intergenic
AGAAGAGAAGAGAAAGAGAA+AGG 0.500342 1_3:+68142106 Msa0136300:five_prime_UTR
TCAAACCTAACCTGACTAGT+TGG 0.507423 1_3:+68141878 Msa0136300:five_prime_UTR
AGAGGAGAGAAAGAGAAGGA+AGG 0.507778 1_3:-68142243 None:intergenic
GGAGACCGTGGACAACAGAT+AGG 0.510446 1_3:-68145347 None:intergenic
TGCAGCCACAATAATAATTG+TGG 0.511078 1_3:-68142037 None:intergenic
TGAATGCATCTTAGGAGAAA+GGG 0.514493 1_3:-68145376 None:intergenic
AGTGTAAATGTTATTGACTT+TGG 0.517614 1_3:+68143593 Msa0136300:CDS
TACCTTGGAGGTAAAGTCGT+TGG 0.519637 1_3:-68142328 None:intergenic
TGCATTCTCTGATGTAGTAG+AGG 0.521881 1_3:-68145403 None:intergenic
TTGACAAATGTTGCTGAGAA+TGG 0.525788 1_3:+68145838 Msa0136300:CDS
AAGGAGAGGGACGGAAGCGA+TGG 0.527345 1_3:-68142224 None:intergenic
AAGAGAAGGAAGGAGAGGGA+CGG 0.527623 1_3:-68142233 None:intergenic
AAGAGAAAGATAAATGTGTC+TGG 0.529818 1_3:-68146399 None:intergenic
GCATTCTCTGATGTAGTAGA+GGG 0.533188 1_3:-68145402 None:intergenic
GACAGTGAAACCGAAAGAGA+AGG 0.534994 1_3:+68142067 Msa0136300:five_prime_UTR
GTCTTCCAAGATTGGTCCAA+AGG 0.536368 1_3:-68141959 None:intergenic
TCAATTTAATGTCGTTGTTG+AGG 0.537014 1_3:+68142642 Msa0136300:CDS
CTACAGCTGATGCTATGAAA+AGG 0.537612 1_3:+68142584 Msa0136300:CDS
TCATTTCTTCAATGATGACT+GGG 0.538264 1_3:+68142692 Msa0136300:CDS
ACAGTGAAACCGAAAGAGAA+GGG 0.546373 1_3:+68142068 Msa0136300:five_prime_UTR
ATCAGCAAATGCTGGGAATG+AGG 0.548689 1_3:+68145434 Msa0136300:CDS
CAAAGGCTCCACGATGGATG+TGG 0.549213 1_3:-68141942 None:intergenic
AGGTAAAGTCGTTGGAGGAG+TGG 0.549356 1_3:-68142320 None:intergenic
ACGACATTAAATTGATCAGA+TGG 0.549624 1_3:-68142634 None:intergenic
TCAACTTCATCTTGCATCTG+AGG 0.550765 1_3:-68146174 None:intergenic
CTTGGAGGTAAAGTCGTTGG+AGG 0.551575 1_3:-68142325 None:intergenic
ATATGGTTTAGTTACCTTGG+AGG 0.551882 1_3:-68142340 None:intergenic
GACTCTCAACTCTACATACA+TGG 0.552730 1_3:+68142149 Msa0136300:exon
CAGAAGCGAGAACAAGAAAG+GGG 0.552961 1_3:-68142293 None:intergenic
TCACAAAAGTTGAAAGCGGT+TGG 0.555582 1_3:+68146083 Msa0136300:three_prime_UTR
GAAATGAGTAACTTGGAAAG+AGG 0.557837 1_3:-68142676 None:intergenic
CGGTTGGCATTGCTGTTGCT+GGG 0.563200 1_3:+68146099 Msa0136300:three_prime_UTR
TTTGTAGGATTTGAGCGAAG+AGG 0.563546 1_3:-68142261 None:intergenic
ATAGCATCAGCTGTAGTTGG+CGG 0.566459 1_3:-68142577 None:intergenic
GGATGATGTCCTTAAGCTCA+GGG 0.566566 1_3:-68145326 None:intergenic
GAAGCGATGGAGAGGAAGAG+AGG 0.566583 1_3:-68142211 None:intergenic
GCGATGGAGAGGAAGAGAGG+AGG 0.566927 1_3:-68142208 None:intergenic
TCAATCAGTGTATAGAGGCA+TGG 0.571490 1_3:+68145911 Msa0136300:three_prime_UTR
GGACCATTTCTGGTATGTTG+GGG 0.572912 1_3:+68142605 Msa0136300:CDS
GAGGGACGGAAGCGATGGAG+AGG 0.573663 1_3:-68142219 None:intergenic
GCAGCCACAATAATAATTGT+GGG 0.577564 1_3:-68142036 None:intergenic
TGAGTATCGAATGGAATTGG+CGG 0.578665 1_3:+68145804 Msa0136300:CDS
GACGTTGACATTCAAGACCT+TGG 0.582269 1_3:+68143659 Msa0136300:CDS
ACATCAGAGAATGCAACAGT+TGG 0.582607 1_3:+68145411 Msa0136300:CDS
GAAATACTGACCAAAAGAGC+AGG 0.586296 1_3:-68145533 None:intergenic
CAGTTGGATCAGCAAATGCT+GGG 0.591873 1_3:+68145427 Msa0136300:CDS
CCAATTCCATTCGATACTCA+AGG 0.592985 1_3:-68145801 None:intergenic
AGGAGCTACGTGAAGTGAAG+AGG 0.593841 1_3:+68144388 Msa0136300:CDS
ATTCTCAGCAACATTTGTCA+AGG 0.595786 1_3:-68145836 None:intergenic
CTCCAACGACTTTACCTCCA+AGG 0.598406 1_3:+68142326 Msa0136300:CDS
TAGAGGCCTTGAGTATCGAA+TGG 0.598996 1_3:+68145795 Msa0136300:CDS
GCGAAGAGGAGAGAAAGAGA+AGG 0.603411 1_3:-68142247 None:intergenic
TGAATGTCAACGTCCTCGTG+AGG 0.617337 1_3:-68143650 None:intergenic
TGGAAGCAATGATATCTCCT+CGG 0.620246 1_3:-68146000 None:intergenic
AGAAAACGAGTTCAATGTAA+CGG 0.621307 1_3:-68144326 None:intergenic
TACTGACCAAAAGAGCAGGC+GGG 0.622149 1_3:-68145529 None:intergenic
ACCATCACAAAAGTTGAAAG+CGG 0.629764 1_3:+68146079 Msa0136300:three_prime_UTR
ATCATCCTATCTGTTGTCCA+CGG 0.630634 1_3:+68145342 Msa0136300:CDS
TATCTCTATGACAGCCTAGT+CGG 0.632547 1_3:-68141919 None:intergenic
AAAGGGTGGCAAGGAGACCG+TGG 0.634725 1_3:-68145359 None:intergenic
TCTTAGGAGAAAGGGTGGCA+AGG 0.640314 1_3:-68145368 None:intergenic
CAGAGATCTTGAGAAGCCGA+AGG 0.645044 1_3:+68143529 Msa0136300:CDS
ATACTGACCAAAAGAGCAGG+CGG 0.646205 1_3:-68145530 None:intergenic
CAAAGTTGAAAAGCCTCACG+AGG 0.665589 1_3:+68143637 Msa0136300:CDS
TAGAGATACCACATCCATCG+TGG 0.669861 1_3:+68141934 Msa0136300:five_prime_UTR
ATGCATCTTAGGAGAAAGGG+TGG 0.676044 1_3:-68145373 None:intergenic
TTGGTCCAAAGGCTCCACGA+TGG 0.690352 1_3:-68141948 None:intergenic
CTTCGGCAGATATTTGACCA+AGG 0.705206 1_3:-68143676 None:intergenic
TAACATTTACACTGTCACGT+AGG 0.718366 1_3:-68143583 None:intergenic
TGGGAATGAGGATTGTGCTG+AGG 0.725822 1_3:+68145446 Msa0136300:CDS
AGAAGCGAGAACAAGAAAGG+GGG 0.727238 1_3:-68142292 None:intergenic
GATGATGTCCTTAAGCTCAG+GGG 0.768594 1_3:-68145325 None:intergenic
GCGCTAGCAAGAGAAACACA+CGG 0.787528 1_3:-68141989 None:intergenic
CTAGCAAGAGAAACACACGG+TGG 0.870989 1_3:-68141986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAAAGATAAATAA+AGG - chr1_3:68141853-68141872 None:intergenic 10.0%
!!! ATTATAAAGTGTTTTTAATT+TGG + chr1_3:68142901-68142920 Msa0136300:intron 10.0%
!! AATTGTTAAAATTTCATTAT+GGG - chr1_3:68143003-68143022 None:intergenic 10.0%
!! AAATTGTTAAAATTTCATTA+TGG - chr1_3:68143004-68143023 None:intergenic 10.0%
!! TTCAAAAGAATTAAAAATTT+GGG - chr1_3:68143369-68143388 None:intergenic 10.0%
!!! GATTTTATAAATAATGATTT+TGG + chr1_3:68144716-68144735 Msa0136300:intron 10.0%
!! AATACATAGTAATATAAAAT+AGG - chr1_3:68145227-68145246 None:intergenic 10.0%
!! TCAAAAGAATTAAAAATTTG+GGG - chr1_3:68143368-68143387 None:intergenic 15.0%
!! CTTCAAAAGAATTAAAAATT+TGG - chr1_3:68143370-68143389 None:intergenic 15.0%
!!! ATTTTAAGAATTTTATGCAT+TGG + chr1_3:68143781-68143800 Msa0136300:intron 15.0%
!! ATTATATAGCATATAAAGAA+AGG - chr1_3:68144548-68144567 None:intergenic 15.0%
!!! TTATATTTTGTATTTGTGTA+AGG + chr1_3:68144661-68144680 Msa0136300:intron 15.0%
!! GCTTTAATAAATCATATAAA+GGG - chr1_3:68144811-68144830 None:intergenic 15.0%
!!! AGCTTTAATAAATCATATAA+AGG - chr1_3:68144812-68144831 None:intergenic 15.0%
!! TTAGTGTTTAAATGAATATT+TGG - chr1_3:68145147-68145166 None:intergenic 15.0%
!!! GAACATTTAAGATTTAATAA+TGG + chr1_3:68145609-68145628 Msa0136300:intron 15.0%
!!! TTTTTAGGTTCATTAACTAA+CGG + chr1_3:68142425-68142444 Msa0136300:intron 20.0%
!! ATACAAAATCTTCCTAATAT+GGG - chr1_3:68143141-68143160 None:intergenic 20.0%
!! AATACAAAATCTTCCTAATA+TGG - chr1_3:68143142-68143161 None:intergenic 20.0%
!! GATTGTCCATTTATTTATTT+AGG - chr1_3:68143260-68143279 None:intergenic 20.0%
!! AAATAAATGGACAATCTATT+CGG + chr1_3:68143264-68143283 Msa0136300:intron 20.0%
!!! TCTATAGTATACCTTTTTTA+TGG - chr1_3:68143741-68143760 None:intergenic 20.0%
!! ATAAAATTCTTAAAATGCCA+AGG - chr1_3:68143777-68143796 None:intergenic 20.0%
!! AATAAATAGAGTAGATCATA+TGG + chr1_3:68143992-68144011 Msa0136300:intron 20.0%
!!! GTTTCTCTTATAGTTTTTTT+AGG - chr1_3:68144050-68144069 None:intergenic 20.0%
!! AAACTATAAGAGAAACTATT+AGG + chr1_3:68144054-68144073 Msa0136300:intron 20.0%
!! AGATTTATAGATTAATGAGT+TGG + chr1_3:68144079-68144098 Msa0136300:intron 20.0%
!! TTGTGATAAAAAAAACAGTA+TGG + chr1_3:68144115-68144134 Msa0136300:intron 20.0%
!! ACACAAATACAAAATATAAC+AGG - chr1_3:68144660-68144679 None:intergenic 20.0%
!! TATATGATTTATTAAAGCTG+AGG + chr1_3:68144813-68144832 Msa0136300:intron 20.0%
!! ATATGATTTATTAAAGCTGA+GGG + chr1_3:68144814-68144833 Msa0136300:intron 20.0%
!! TTAAAAACTAGATACAACTA+AGG - chr1_3:68146220-68146239 None:intergenic 20.0%
!!! AGTATGTACAGATTTTATTT+CGG - chr1_3:68146306-68146325 None:intergenic 20.0%
!!! GTAATGACTATTTTTTAGTT+AGG + chr1_3:68146351-68146370 Msa0136300:three_prime_UTR 20.0%
! ATTCAACAGTAGTAGTAATA+TGG - chr1_3:68142360-68142379 None:intergenic 25.0%
!!! TAAGAAGGAATTGACTTTTT+AGG + chr1_3:68142410-68142429 Msa0136300:intron 25.0%
!!! TTTTAGGTTCATTAACTAAC+GGG + chr1_3:68142426-68142445 Msa0136300:intron 25.0%
! TTTGTAGAAATCTGCTTTAT+CGG + chr1_3:68142501-68142520 Msa0136300:intron 25.0%
! TGAATATTACTCACATCTAA+AGG - chr1_3:68142547-68142566 None:intergenic 25.0%
!! AAATTTTCATGTTCTTGCTA+TGG + chr1_3:68142758-68142777 Msa0136300:intron 25.0%
! TACAAAATCTTCCTAATATG+GGG - chr1_3:68143140-68143159 None:intergenic 25.0%
! ACACAGCCTAAATAAATAAA+TGG + chr1_3:68143251-68143270 Msa0136300:intron 25.0%
! CAAGTAATGTTTATCCAAAT+GGG + chr1_3:68143414-68143433 Msa0136300:intron 25.0%
! AAGTAATGTTTATCCAAATG+GGG + chr1_3:68143415-68143434 Msa0136300:intron 25.0%
!!! AGTGTAAATGTTATTGACTT+TGG + chr1_3:68143593-68143612 Msa0136300:CDS 25.0%
! AGAAATATATTCTTGAGCTT+CGG - chr1_3:68143696-68143715 None:intergenic 25.0%
! TTTAGACCAATAACTAACAA+TGG - chr1_3:68143851-68143870 None:intergenic 25.0%
!!! ATTGGTCTAAAGTTTTATGT+TGG + chr1_3:68143860-68143879 Msa0136300:intron 25.0%
!! TTTTTATCACAAGCCATATT+TGG - chr1_3:68144107-68144126 None:intergenic 25.0%
! AGAAGAAAAGAATGATTTAC+TGG + chr1_3:68144446-68144465 Msa0136300:CDS 25.0%
!! CAAACAAGAATTTTCACAAA+AGG - chr1_3:68144507-68144526 None:intergenic 25.0%
! ATATAGCATATAAAGAAAGG+TGG - chr1_3:68144545-68144564 None:intergenic 25.0%
! TATCTATGCTTATTAACCAT+TGG + chr1_3:68144741-68144760 Msa0136300:intron 25.0%
! TATGATTTATTAAAGCTGAG+GGG + chr1_3:68144815-68144834 Msa0136300:intron 25.0%
! TATTTGGATTTGTCACATAT+TGG - chr1_3:68145131-68145150 None:intergenic 25.0%
!!! GTTTATATCAGTGTTTTAGT+CGG + chr1_3:68145254-68145273 Msa0136300:intron 25.0%
!!! TTTATATCAGTGTTTTAGTC+GGG + chr1_3:68145255-68145274 Msa0136300:intron 25.0%
!! AGCCTTTTATATCATTAACT+CGG + chr1_3:68145496-68145515 Msa0136300:CDS 25.0%
!! TTTAAGGTTATGTACTAATG+TGG + chr1_3:68145688-68145707 Msa0136300:intron 25.0%
AACACCCACAATTATTATTG+TGG + chr1_3:68142032-68142051 Msa0136300:five_prime_UTR 30.0%
GTAATATGGTTTAGTTACCT+TGG - chr1_3:68142346-68142365 None:intergenic 30.0%
TCCATCATGTGATTATAAGA+AGG + chr1_3:68142395-68142414 Msa0136300:intron 30.0%
TCCTTCTTATAATCACATGA+TGG - chr1_3:68142399-68142418 None:intergenic 30.0%
ACGACATTAAATTGATCAGA+TGG - chr1_3:68142637-68142656 None:intergenic 30.0%
TCAATTTAATGTCGTTGTTG+AGG + chr1_3:68142642-68142661 Msa0136300:CDS 30.0%
CATTGAAGAAATGAGTAACT+TGG - chr1_3:68142686-68142705 None:intergenic 30.0%
TCATTTCTTCAATGATGACT+GGG + chr1_3:68142692-68142711 Msa0136300:CDS 30.0%
TACAGAATGTTGTCAAATTG+CGG + chr1_3:68142958-68142977 Msa0136300:intron 30.0%
!!! ATTTTTGAGTTCCCCATATT+AGG + chr1_3:68143126-68143145 Msa0136300:intron 30.0%
! ATAAACCCTACCTTTAAGTT+AGG + chr1_3:68143177-68143196 Msa0136300:intron 30.0%
! TAAACCCTACCTTTAAGTTA+GGG + chr1_3:68143178-68143197 Msa0136300:intron 30.0%
ATAATAGTCCCCTAACTTAA+AGG - chr1_3:68143190-68143209 None:intergenic 30.0%
CCATTTGGATAAACATTACT+TGG - chr1_3:68143416-68143435 None:intergenic 30.0%
CCAAGTAATGTTTATCCAAA+TGG + chr1_3:68143413-68143432 Msa0136300:intron 30.0%
AGTAATGTTTATCCAAATGG+GGG + chr1_3:68143416-68143435 Msa0136300:intron 30.0%
GAAGCTCAAGAATATATTTC+TGG + chr1_3:68143695-68143714 Msa0136300:CDS 30.0%
TCGTTTGTCTTCCATAAAAA+AGG + chr1_3:68143727-68143746 Msa0136300:CDS 30.0%
AATTCTTAAAATGCCAAGGA+AGG - chr1_3:68143773-68143792 None:intergenic 30.0%
CATTAGCCATTGTTAGTTAT+TGG + chr1_3:68143842-68143861 Msa0136300:intron 30.0%
AACACCTAAAGTAGAAAAGA+TGG + chr1_3:68143914-68143933 Msa0136300:intron 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG + chr1_3:68143925-68143944 Msa0136300:intron 30.0%
AAATAGAGTAGATCATATGG+AGG + chr1_3:68143995-68144014 Msa0136300:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + chr1_3:68144091-68144110 Msa0136300:intron 30.0%
TTTGATTGTCACATTTCTCA+TGG + chr1_3:68144211-68144230 Msa0136300:intron 30.0%
AGAAAACGAGTTCAATGTAA+CGG - chr1_3:68144329-68144348 None:intergenic 30.0%
! TGTTTCTTTTCCTTCCTTTT+TGG + chr1_3:68144355-68144374 Msa0136300:CDS 30.0%
TAAAGAAAGGTGGTTGTAAA+TGG - chr1_3:68144535-68144554 None:intergenic 30.0%
!! AATTGCCATGCATTTTAACA+TGG + chr1_3:68144565-68144584 Msa0136300:intron 30.0%
AACTACAAGATAACAAACCA+AGG - chr1_3:68144606-68144625 None:intergenic 30.0%
! TTGTATCCTTTTCCATCATT+AGG + chr1_3:68145096-68145115 Msa0136300:intron 30.0%
! TTTCATCCTAATGATGGAAA+AGG - chr1_3:68145105-68145124 None:intergenic 30.0%
! TGGAATTTTCATCCTAATGA+TGG - chr1_3:68145111-68145130 None:intergenic 30.0%
! GCCTTTTATATCATTAACTC+GGG + chr1_3:68145497-68145516 Msa0136300:CDS 30.0%
TCCCGAGTTAATGATATAAA+AGG - chr1_3:68145501-68145520 None:intergenic 30.0%
ATGATACTTGAAAGATGATC+TGG + chr1_3:68145660-68145679 Msa0136300:intron 30.0%
!! AGATGATCTGGAATGTTTTA+AGG + chr1_3:68145672-68145691 Msa0136300:intron 30.0%
AAGACAAAATACTGCTTTCA+TGG + chr1_3:68146024-68146043 Msa0136300:three_prime_UTR 30.0%
TTTATCAGTTCTTCATTGCT+AGG - chr1_3:68146276-68146295 None:intergenic 30.0%
AAGAGAAAGATAAATGTGTC+TGG - chr1_3:68146402-68146421 None:intergenic 30.0%
GCAGCCACAATAATAATTGT+GGG - chr1_3:68142039-68142058 None:intergenic 35.0%
TGCAGCCACAATAATAATTG+TGG - chr1_3:68142040-68142059 None:intergenic 35.0%
AGAAGAGAAGAGAAAGAGAA+AGG + chr1_3:68142106-68142125 Msa0136300:five_prime_UTR 35.0%
!! AAGAGAAAGAGAAAGGTGTT+GGG + chr1_3:68142113-68142132 Msa0136300:five_prime_UTR 35.0%
ATATGGTTTAGTTACCTTGG+AGG - chr1_3:68142343-68142362 None:intergenic 35.0%
GAAATGAGTAACTTGGAAAG+AGG - chr1_3:68142679-68142698 None:intergenic 35.0%
CTCATTTCTTCAATGATGAC+TGG + chr1_3:68142691-68142710 Msa0136300:CDS 35.0%
AGCTAATCGGATTGTTATCA+TGG + chr1_3:68142781-68142800 Msa0136300:intron 35.0%
CGTTCTCTACAAAACTAATG+TGG - chr1_3:68142838-68142857 None:intergenic 35.0%
GAACGAGAAGAAAATGCTTA+TGG + chr1_3:68142853-68142872 Msa0136300:intron 35.0%
TGTTGACATGTTGTCAATCT+CGG - chr1_3:68143042-68143061 None:intergenic 35.0%
CTCAAAAATGTATTGGAGGA+GGG - chr1_3:68143115-68143134 None:intergenic 35.0%
ACTCAAAAATGTATTGGAGG+AGG - chr1_3:68143116-68143135 None:intergenic 35.0%
GGAACTCAAAAATGTATTGG+AGG - chr1_3:68143119-68143138 None:intergenic 35.0%
TGGGGAACTCAAAAATGTAT+TGG - chr1_3:68143122-68143141 None:intergenic 35.0%
! AAACCCTACCTTTAAGTTAG+GGG + chr1_3:68143179-68143198 Msa0136300:intron 35.0%
!!! TGTGTTTTTGAGTTTAGGAG+GGG - chr1_3:68143236-68143255 None:intergenic 35.0%
!!! CTGTGTTTTTGAGTTTAGGA+GGG - chr1_3:68143237-68143256 None:intergenic 35.0%
!!! TAGGCTGTGTTTTTGAGTTT+AGG - chr1_3:68143241-68143260 None:intergenic 35.0%
AAGCTTTCTTCATGTACTAC+AGG + chr1_3:68143447-68143466 Msa0136300:intron 35.0%
AACTTAGTACTTTCTGCCTT+CGG - chr1_3:68143548-68143567 None:intergenic 35.0%
TAACATTTACACTGTCACGT+AGG - chr1_3:68143586-68143605 None:intergenic 35.0%
TAGAATTGAAGATCCTTCCT+TGG + chr1_3:68143757-68143776 Msa0136300:intron 35.0%
ACCTAAAGTAGAAAAGATGG+TGG + chr1_3:68143917-68143936 Msa0136300:intron 35.0%
! TCCACCATCTTTTCTACTTT+AGG - chr1_3:68143921-68143940 None:intergenic 35.0%
GAGGATAATCAGATTACAAG+AGG + chr1_3:68144014-68144033 Msa0136300:intron 35.0%
AATCAGATTACAAGAGGTAG+AGG + chr1_3:68144020-68144039 Msa0136300:intron 35.0%
ATAATCAACACCGAAGGATA+AGG - chr1_3:68144241-68144260 None:intergenic 35.0%
!! TTATCCTTCGGTGTTGATTA+TGG + chr1_3:68144240-68144259 Msa0136300:intron 35.0%
! ATGGTCTCTAATTTGTCTGT+TGG + chr1_3:68144259-68144278 Msa0136300:intron 35.0%
CAGTTATCTCAATTGCAGTT+AGG + chr1_3:68144300-68144319 Msa0136300:intron 35.0%
!! TTAGAAGTGTCCAAAAAGGA+AGG - chr1_3:68144368-68144387 None:intergenic 35.0%
! TCCTTTTTGGACACTTCTAA+AGG + chr1_3:68144368-68144387 Msa0136300:CDS 35.0%
!! TCCTTTAGAAGTGTCCAAAA+AGG - chr1_3:68144372-68144391 None:intergenic 35.0%
CTTCAAATGCAGCAATTTGT+TGG + chr1_3:68144423-68144442 Msa0136300:CDS 35.0%
TTGCACCATGTTAAAATGCA+TGG - chr1_3:68144573-68144592 None:intergenic 35.0%
TAACATGGTGCAATTCTATC+TGG + chr1_3:68144580-68144599 Msa0136300:intron 35.0%
TTGTATTTGTGTAAGGTGTG+TGG + chr1_3:68144668-68144687 Msa0136300:intron 35.0%
ACGAGGAAAAAAACTACCAA+TGG - chr1_3:68144760-68144779 None:intergenic 35.0%
GAAACGTGAAATATATCACG+AGG - chr1_3:68144777-68144796 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr1_3:68144911-68144930 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr1_3:68144910-68144929 Msa0136300:intron 35.0%
AAATCATATAAAGGGCAACC+TGG - chr1_3:68145002-68145021 None:intergenic 35.0%
TGAATGCATCTTAGGAGAAA+GGG - chr1_3:68145379-68145398 None:intergenic 35.0%
TTGAATGCATCTTAGGAGAA+AGG - chr1_3:68145380-68145399 None:intergenic 35.0%
ATTCTCAGCAACATTTGTCA+AGG - chr1_3:68145839-68145858 None:intergenic 35.0%
TTGACAAATGTTGCTGAGAA+TGG + chr1_3:68145838-68145857 Msa0136300:CDS 35.0%
ACTCTTCAATCAGTGTATAG+AGG + chr1_3:68145906-68145925 Msa0136300:three_prime_UTR 35.0%
CATAATCTCTTCGTGTTGAA+AGG - chr1_3:68145953-68145972 None:intergenic 35.0%
! GAAAGCAGTATTTTGTCTTC+TGG - chr1_3:68146023-68146042 None:intergenic 35.0%
ACCATCACAAAAGTTGAAAG+CGG + chr1_3:68146079-68146098 Msa0136300:three_prime_UTR 35.0%
TCAAACCTAACCTGACTAGT+TGG + chr1_3:68141878-68141897 Msa0136300:five_prime_UTR 40.0%
AACTTCCAACTAGTCAGGTT+AGG - chr1_3:68141886-68141905 None:intergenic 40.0%
! AACCTGACTAGTTGGAAGTT+TGG + chr1_3:68141886-68141905 Msa0136300:five_prime_UTR 40.0%
TTCCAAACTTCCAACTAGTC+AGG - chr1_3:68141891-68141910 None:intergenic 40.0%
TATCTCTATGACAGCCTAGT+CGG - chr1_3:68141922-68141941 None:intergenic 40.0%
GTGGATATGTCTTCCAAGAT+TGG - chr1_3:68141970-68141989 None:intergenic 40.0%
ACAGTGAAACCGAAAGAGAA+GGG + chr1_3:68142068-68142087 Msa0136300:five_prime_UTR 40.0%
CTTCTTCTTCCCTTCTCTTT+CGG - chr1_3:68142080-68142099 None:intergenic 40.0%
! GAAGAGAAAGAGAAAGGTGT+TGG + chr1_3:68142112-68142131 Msa0136300:five_prime_UTR 40.0%
GACTCTCAACTCTACATACA+TGG + chr1_3:68142149-68142168 Msa0136300:exon 40.0%
TTTGTAGGATTTGAGCGAAG+AGG - chr1_3:68142264-68142283 None:intergenic 40.0%
! AAGGGGGAACGATATTTTGT+AGG - chr1_3:68142279-68142298 None:intergenic 40.0%
TTCATAGCATCAGCTGTAGT+TGG - chr1_3:68142583-68142602 None:intergenic 40.0%
CTACAGCTGATGCTATGAAA+AGG + chr1_3:68142584-68142603 Msa0136300:CDS 40.0%
GCTATGAAAAGGACCATTTC+TGG + chr1_3:68142595-68142614 Msa0136300:CDS 40.0%
!! AAGGACCATTTCTGGTATGT+TGG + chr1_3:68142603-68142622 Msa0136300:CDS 40.0%
!! AGGACCATTTCTGGTATGTT+GGG + chr1_3:68142604-68142623 Msa0136300:CDS 40.0%
! GTTCTTGCTATGGAGCTAAT+CGG + chr1_3:68142768-68142787 Msa0136300:intron 40.0%
AGTCCCCTAACTTAAAGGTA+GGG - chr1_3:68143185-68143204 None:intergenic 40.0%
TAGTCCCCTAACTTAAAGGT+AGG - chr1_3:68143186-68143205 None:intergenic 40.0%
!!! GCTGTGTTTTTGAGTTTAGG+AGG - chr1_3:68143238-68143257 None:intergenic 40.0%
TGGACAATCTATTCGGAGAA+TGG + chr1_3:68143271-68143290 Msa0136300:intron 40.0%
AATCTATTCGGAGAATGGAG+AGG + chr1_3:68143276-68143295 Msa0136300:intron 40.0%
!! TGCTGAGTATAGGCTTTGTT+TGG + chr1_3:68143484-68143503 Msa0136300:CDS 40.0%
ATAATGCGATGAATCGTGTG+TGG + chr1_3:68143808-68143827 Msa0136300:intron 40.0%
ATTAGAGAGAGAGAGAGAAC+TGG + chr1_3:68143887-68143906 Msa0136300:intron 40.0%
TTAGAGAGAGAGAGAGAACT+GGG + chr1_3:68143888-68143907 Msa0136300:intron 40.0%
AAAATAGGCTCAGGTGGTTT+GGG + chr1_3:68143940-68143959 Msa0136300:intron 40.0%
GCATGTAGAGATAAGACTTG+TGG + chr1_3:68143962-68143981 Msa0136300:intron 40.0%
TCATGGTATGCCTTATCCTT+CGG + chr1_3:68144228-68144247 Msa0136300:intron 40.0%
ACAAAAGGCAAAACCTGTTC+AGG - chr1_3:68144492-68144511 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr1_3:68144860-68144879 Msa0136300:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr1_3:68144904-68144923 Msa0136300:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr1_3:68144905-68144924 Msa0136300:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_3:68144936-68144955 Msa0136300:intron 40.0%
TATAACCAACCCTGCTTAGT+TGG + chr1_3:68145041-68145060 Msa0136300:intron 40.0%
! GAGTCTTTTCCAACTAAGCA+GGG - chr1_3:68145053-68145072 None:intergenic 40.0%
! AGAGTCTTTTCCAACTAAGC+AGG - chr1_3:68145054-68145073 None:intergenic 40.0%
!! GTGACATTATTAGCTTGTGC+AGG + chr1_3:68145201-68145220 Msa0136300:intron 40.0%
AAGCTCAGGGGATGTAAATT+CGG - chr1_3:68145316-68145335 None:intergenic 40.0%
ATTTACATCCCCTGAGCTTA+AGG + chr1_3:68145317-68145336 Msa0136300:CDS 40.0%
ATCATCCTATCTGTTGTCCA+CGG + chr1_3:68145342-68145361 Msa0136300:CDS 40.0%
GCATTCTCTGATGTAGTAGA+GGG - chr1_3:68145405-68145424 None:intergenic 40.0%
TGCATTCTCTGATGTAGTAG+AGG - chr1_3:68145406-68145425 None:intergenic 40.0%
ACATCAGAGAATGCAACAGT+TGG + chr1_3:68145411-68145430 Msa0136300:CDS 40.0%
GAAATACTGACCAAAAGAGC+AGG - chr1_3:68145536-68145555 None:intergenic 40.0%
AGTTCAGAAACCAGATCAAC+AGG - chr1_3:68145716-68145735 None:intergenic 40.0%
CCAATTCCATTCGATACTCA+AGG - chr1_3:68145804-68145823 None:intergenic 40.0%
!! CCTTGAGTATCGAATGGAAT+TGG + chr1_3:68145801-68145820 Msa0136300:CDS 40.0%
!! TGAGTATCGAATGGAATTGG+CGG + chr1_3:68145804-68145823 Msa0136300:CDS 40.0%
TCAATCAGTGTATAGAGGCA+TGG + chr1_3:68145911-68145930 Msa0136300:three_prime_UTR 40.0%
TGGAAGCAATGATATCTCCT+CGG - chr1_3:68146003-68146022 None:intergenic 40.0%
! ACCGCTTTCAACTTTTGTGA+TGG - chr1_3:68146083-68146102 None:intergenic 40.0%
TCACAAAAGTTGAAAGCGGT+TGG + chr1_3:68146083-68146102 Msa0136300:three_prime_UTR 40.0%
TCAACTTCATCTTGCATCTG+AGG - chr1_3:68146177-68146196 None:intergenic 40.0%
TTGGAATCTGTTAGCCGACT+AGG + chr1_3:68141905-68141924 Msa0136300:five_prime_UTR 45.0%
TAGAGATACCACATCCATCG+TGG + chr1_3:68141934-68141953 Msa0136300:five_prime_UTR 45.0%
! GTCTTCCAAGATTGGTCCAA+AGG - chr1_3:68141962-68141981 None:intergenic 45.0%
GACAGTGAAACCGAAAGAGA+AGG + chr1_3:68142067-68142086 Msa0136300:five_prime_UTR 45.0%
!!! GAGAAAGGTGTTGGGTTTTG+TGG + chr1_3:68142121-68142140 Msa0136300:five_prime_UTR 45.0%
GAGAAAGAGAAGGAAGGAGA+GGG - chr1_3:68142240-68142259 None:intergenic 45.0%
AGAGAAAGAGAAGGAAGGAG+AGG - chr1_3:68142241-68142260 None:intergenic 45.0%
AGAGGAGAGAAAGAGAAGGA+AGG - chr1_3:68142246-68142265 None:intergenic 45.0%
AGAAGCGAGAACAAGAAAGG+GGG - chr1_3:68142295-68142314 None:intergenic 45.0%
CAGAAGCGAGAACAAGAAAG+GGG - chr1_3:68142296-68142315 None:intergenic 45.0%
GCAGAAGCGAGAACAAGAAA+GGG - chr1_3:68142297-68142316 None:intergenic 45.0%
TGCAGAAGCGAGAACAAGAA+AGG - chr1_3:68142298-68142317 None:intergenic 45.0%
TACCTTGGAGGTAAAGTCGT+TGG - chr1_3:68142331-68142350 None:intergenic 45.0%
ATAGCATCAGCTGTAGTTGG+CGG - chr1_3:68142580-68142599 None:intergenic 45.0%
!! GGACCATTTCTGGTATGTTG+GGG + chr1_3:68142605-68142624 Msa0136300:CDS 45.0%
CAACCCCAACATACCAGAAA+TGG - chr1_3:68142611-68142630 None:intergenic 45.0%
ATGTCGTTGTTGAGGCTTTG+TGG + chr1_3:68142650-68142669 Msa0136300:CDS 45.0%
! TGTCGTTGTTGAGGCTTTGT+GGG + chr1_3:68142651-68142670 Msa0136300:CDS 45.0%
!! GTATTGGAGGAGGGTTTTGA+GGG - chr1_3:68143106-68143125 None:intergenic 45.0%
! TGTATTGGAGGAGGGTTTTG+AGG - chr1_3:68143107-68143126 None:intergenic 45.0%
GCTTCTCATATTCCCCCATT+TGG - chr1_3:68143431-68143450 None:intergenic 45.0%
CATTGCGCAATGCTGAGTAT+AGG + chr1_3:68143474-68143493 Msa0136300:CDS 45.0%
! CTCGTGAGGCTTTTCAACTT+TGG - chr1_3:68143639-68143658 None:intergenic 45.0%
CAAAGTTGAAAAGCCTCACG+AGG + chr1_3:68143637-68143656 Msa0136300:CDS 45.0%
GACGTTGACATTCAAGACCT+TGG + chr1_3:68143659-68143678 Msa0136300:CDS 45.0%
CTTCGGCAGATATTTGACCA+AGG - chr1_3:68143679-68143698 None:intergenic 45.0%
TAGAGAGAGAGAGAGAACTG+GGG + chr1_3:68143889-68143908 Msa0136300:intron 45.0%
!! AGATGGTGGAAAATAGGCTC+AGG + chr1_3:68143931-68143950 Msa0136300:intron 45.0%
GAAAATAGGCTCAGGTGGTT+TGG + chr1_3:68143939-68143958 Msa0136300:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_3:68144164-68144183 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_3:68144165-68144184 None:intergenic 45.0%
GAGACCATAATCAACACCGA+AGG - chr1_3:68144247-68144266 None:intergenic 45.0%
TTAAAGCTGAGGGGTAACCT+TGG + chr1_3:68144824-68144843 Msa0136300:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr1_3:68144866-68144885 Msa0136300:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr1_3:68144867-68144886 Msa0136300:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr1_3:68144900-68144919 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1_3:68144932-68144951 Msa0136300:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_3:68144935-68144954 Msa0136300:intron 45.0%
! CTTTTCCAACTAAGCAGGGT+TGG - chr1_3:68145049-68145068 None:intergenic 45.0%
! TGTGCATGTTGCTATTGAGC+AGG + chr1_3:68145278-68145297 Msa0136300:intron 45.0%
GATGATGTCCTTAAGCTCAG+GGG - chr1_3:68145328-68145347 None:intergenic 45.0%
GGATGATGTCCTTAAGCTCA+GGG - chr1_3:68145329-68145348 None:intergenic 45.0%
AGGATGATGTCCTTAAGCTC+AGG - chr1_3:68145330-68145349 None:intergenic 45.0%
ATGCATCTTAGGAGAAAGGG+TGG - chr1_3:68145376-68145395 None:intergenic 45.0%
!! GAGGGCTTTGAATGCATCTT+AGG - chr1_3:68145387-68145406 None:intergenic 45.0%
ACAGTTGGATCAGCAAATGC+TGG + chr1_3:68145426-68145445 Msa0136300:CDS 45.0%
CAGTTGGATCAGCAAATGCT+GGG + chr1_3:68145427-68145446 Msa0136300:CDS 45.0%
ATCAGCAAATGCTGGGAATG+AGG + chr1_3:68145434-68145453 Msa0136300:CDS 45.0%
ATACTGACCAAAAGAGCAGG+CGG - chr1_3:68145533-68145552 None:intergenic 45.0%
CTGTTGGGACACTATCTTAG+AGG + chr1_3:68145778-68145797 Msa0136300:CDS 45.0%
!! TAGAGGCCTTGAGTATCGAA+TGG + chr1_3:68145795-68145814 Msa0136300:CDS 45.0%
TGGAGCCTTTGGACCAATCT+TGG + chr1_3:68141954-68141973 Msa0136300:five_prime_UTR 50.0%
CTAGCAAGAGAAACACACGG+TGG - chr1_3:68141989-68142008 None:intergenic 50.0%
GCGCTAGCAAGAGAAACACA+CGG - chr1_3:68141992-68142011 None:intergenic 50.0%
GAAGGAGAGAATGGAGGGAA+GGG - chr1_3:68142178-68142197 None:intergenic 50.0%
AGAAGGAGAGAATGGAGGGA+AGG - chr1_3:68142179-68142198 None:intergenic 50.0%
GAGGAGAAGGAGAGAATGGA+GGG - chr1_3:68142183-68142202 None:intergenic 50.0%
AAGAGAAGGAAGGAGAGGGA+CGG - chr1_3:68142236-68142255 None:intergenic 50.0%
GCGAAGAGGAGAGAAAGAGA+AGG - chr1_3:68142250-68142269 None:intergenic 50.0%
GGTAAAGTCGTTGGAGGAGT+GGG - chr1_3:68142322-68142341 None:intergenic 50.0%
AGGTAAAGTCGTTGGAGGAG+TGG - chr1_3:68142323-68142342 None:intergenic 50.0%
CTTGGAGGTAAAGTCGTTGG+AGG - chr1_3:68142328-68142347 None:intergenic 50.0%
CTCCAACGACTTTACCTCCA+AGG + chr1_3:68142326-68142345 Msa0136300:CDS 50.0%
! AGGGGACGACTTTGGGAAAA+AGG - chr1_3:68143218-68143237 None:intergenic 50.0%
GTTTAGGAGGGGACGACTTT+GGG - chr1_3:68143225-68143244 None:intergenic 50.0%
AGTTTAGGAGGGGACGACTT+TGG - chr1_3:68143226-68143245 None:intergenic 50.0%
CAGAGATCTTGAGAAGCCGA+AGG + chr1_3:68143529-68143548 Msa0136300:CDS 50.0%
TGAATGTCAACGTCCTCGTG+AGG - chr1_3:68143653-68143672 None:intergenic 50.0%
TGGTGGAAAATAGGCTCAGG+TGG + chr1_3:68143934-68143953 Msa0136300:intron 50.0%
ACTAAGTGGGGTCGACTACA+AGG - chr1_3:68144152-68144171 None:intergenic 50.0%
TTGTAGTCGACCCCACTTAG+TGG + chr1_3:68144151-68144170 Msa0136300:intron 50.0%
TGTAGTCGACCCCACTTAGT+GGG + chr1_3:68144152-68144171 Msa0136300:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_3:68144166-68144185 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_3:68144163-68144182 Msa0136300:intron 50.0%
CTTAGTGGGATAAGGCTTGG+TGG + chr1_3:68144166-68144185 Msa0136300:intron 50.0%
AGGAGCTACGTGAAGTGAAG+AGG + chr1_3:68144388-68144407 Msa0136300:CDS 50.0%
GAGATCGCTTCAACCTGAAC+AGG + chr1_3:68144476-68144495 Msa0136300:CDS 50.0%
GGTGCAATTCTATCTGGCCT+TGG + chr1_3:68144586-68144605 Msa0136300:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_3:68144844-68144863 None:intergenic 50.0%
TCTTAGGAGAAAGGGTGGCA+AGG - chr1_3:68145371-68145390 None:intergenic 50.0%
TGGGAATGAGGATTGTGCTG+AGG + chr1_3:68145446-68145465 Msa0136300:CDS 50.0%
TACTGACCAAAAGAGCAGGC+GGG - chr1_3:68145532-68145551 None:intergenic 50.0%
TAATGTGGCGCCTGTTGATC+TGG + chr1_3:68145703-68145722 Msa0136300:intron 50.0%
CGGCAGAAGCGACTAAAACT+TGG - chr1_3:68145983-68146002 None:intergenic 50.0%
!! AGTTTTAGTCGCTTCTGCCG+AGG + chr1_3:68145983-68146002 Msa0136300:three_prime_UTR 50.0%
CAAAGGCTCCACGATGGATG+TGG - chr1_3:68141945-68141964 None:intergenic 55.0%
CACATCCATCGTGGAGCCTT+TGG + chr1_3:68141943-68141962 Msa0136300:five_prime_UTR 55.0%
TTGGTCCAAAGGCTCCACGA+TGG - chr1_3:68141951-68141970 None:intergenic 55.0%
GGAGGAGAAGGAGAGAATGG+AGG - chr1_3:68142184-68142203 None:intergenic 55.0%
GGAGGAGGAGAAGGAGAGAA+TGG - chr1_3:68142187-68142206 None:intergenic 55.0%
ATGGAGAGGAAGAGAGGAGG+AGG - chr1_3:68142208-68142227 None:intergenic 55.0%
GAAGCGATGGAGAGGAAGAG+AGG - chr1_3:68142214-68142233 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_3:68144158-68144177 Msa0136300:intron 55.0%
! AAGGTCACGGGTTCTAGTCC+TGG + chr1_3:68144879-68144898 Msa0136300:intron 55.0%
! CAAATGGTGGGACCCCTTTC+CGG + chr1_3:68144948-68144967 Msa0136300:intron 55.0%
GGAGACCGTGGACAACAGAT+AGG - chr1_3:68145350-68145369 None:intergenic 55.0%
! ATCTTGCCCGCCTGCTCTTT+TGG + chr1_3:68145523-68145542 Msa0136300:CDS 55.0%
TTCTCAATGACCCCCCTCGA+AGG + chr1_3:68145749-68145768 Msa0136300:intron 55.0%
AACAGCATGCACCTTCGAGG+GGG - chr1_3:68145763-68145782 None:intergenic 55.0%
CAACAGCATGCACCTTCGAG+GGG - chr1_3:68145764-68145783 None:intergenic 55.0%
CCAACAGCATGCACCTTCGA+GGG - chr1_3:68145765-68145784 None:intergenic 55.0%
! CCTCGAAGGTGCATGCTGTT+GGG + chr1_3:68145763-68145782 Msa0136300:intron 55.0%
! CGGTTGGCATTGCTGTTGCT+GGG + chr1_3:68146099-68146118 Msa0136300:three_prime_UTR 55.0%
AGAGGAGGAGGAGGAGGAGA+AGG - chr1_3:68142196-68142215 None:intergenic 60.0%
AGGAAGAGAGGAGGAGGAGG+AGG - chr1_3:68142202-68142221 None:intergenic 60.0%
GAGAGGAAGAGAGGAGGAGG+AGG - chr1_3:68142205-68142224 None:intergenic 60.0%
GCGATGGAGAGGAAGAGAGG+AGG - chr1_3:68142211-68142230 None:intergenic 60.0%
AAGGAGAGGGACGGAAGCGA+TGG - chr1_3:68142227-68142246 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr1_3:68144833-68144852 Msa0136300:intron 60.0%
CGGAAAGGGGTCCCACCATT+TGG - chr1_3:68144950-68144969 None:intergenic 60.0%
CATACGCAGGGTCCGGAAAG+GGG - chr1_3:68144963-68144982 None:intergenic 60.0%
GCATACGCAGGGTCCGGAAA+GGG - chr1_3:68144964-68144983 None:intergenic 60.0%
CTTTCCGGACCCTGCGTATG+CGG + chr1_3:68144963-68144982 Msa0136300:intron 60.0%
TTTCCGGACCCTGCGTATGC+GGG + chr1_3:68144964-68144983 Msa0136300:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr1_3:68144975-68144994 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr1_3:68144976-68144995 None:intergenic 60.0%
AAAGGGTGGCAAGGAGACCG+TGG - chr1_3:68145362-68145381 None:intergenic 60.0%
ACAGCATGCACCTTCGAGGG+GGG - chr1_3:68145762-68145781 None:intergenic 60.0%
! CCCTCGAAGGTGCATGCTGT+TGG + chr1_3:68145762-68145781 Msa0136300:intron 60.0%
CCCAACAGCATGCACCTTCG+AGG - chr1_3:68145766-68145785 None:intergenic 60.0%
! GCGGTTGGCATTGCTGTTGC+TGG + chr1_3:68146098-68146117 Msa0136300:three_prime_UTR 60.0%
GAGGGACGGAAGCGATGGAG+AGG - chr1_3:68142222-68142241 None:intergenic 65.0%
CGCATACGCAGGGTCCGGAA+AGG - chr1_3:68144965-68144984 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+AGG + chr1_3:68144981-68145000 Msa0136300:intron 65.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_3:68144970-68144989 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 68141834 68146441 68141834 ID=Msa0136300;Name=Msa0136300
chr1_3 mRNA 68141834 68146441 68141834 ID=Msa0136300-mRNA-1;Parent=Msa0136300;Name=Msa0136300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=334|0.8|0.83|1|1|1|6|553|407
chr1_3 exon 68141834 68142347 68141834 ID=Msa0136300-mRNA-1:exon:23486;Parent=Msa0136300-mRNA-1
chr1_3 exon 68142508 68142713 68142508 ID=Msa0136300-mRNA-1:exon:23487;Parent=Msa0136300-mRNA-1
chr1_3 exon 68143469 68143748 68143469 ID=Msa0136300-mRNA-1:exon:23488;Parent=Msa0136300-mRNA-1
chr1_3 exon 68144303 68144497 68144303 ID=Msa0136300-mRNA-1:exon:23489;Parent=Msa0136300-mRNA-1
chr1_3 exon 68145300 68145544 68145300 ID=Msa0136300-mRNA-1:exon:23490;Parent=Msa0136300-mRNA-1
chr1_3 exon 68145771 68146441 68145771 ID=Msa0136300-mRNA-1:exon:23491;Parent=Msa0136300-mRNA-1
chr1_3 five_prime_UTR 68141834 68142167 68141834 ID=Msa0136300-mRNA-1:five_prime_utr;Parent=Msa0136300-mRNA-1
chr1_3 CDS 68142168 68142347 68142168 ID=Msa0136300-mRNA-1:cds;Parent=Msa0136300-mRNA-1
chr1_3 CDS 68142508 68142713 68142508 ID=Msa0136300-mRNA-1:cds;Parent=Msa0136300-mRNA-1
chr1_3 CDS 68143469 68143748 68143469 ID=Msa0136300-mRNA-1:cds;Parent=Msa0136300-mRNA-1
chr1_3 CDS 68144303 68144497 68144303 ID=Msa0136300-mRNA-1:cds;Parent=Msa0136300-mRNA-1
chr1_3 CDS 68145300 68145544 68145300 ID=Msa0136300-mRNA-1:cds;Parent=Msa0136300-mRNA-1
chr1_3 CDS 68145771 68145888 68145771 ID=Msa0136300-mRNA-1:cds;Parent=Msa0136300-mRNA-1
chr1_3 three_prime_UTR 68145889 68146441 68145889 ID=Msa0136300-mRNA-1:three_prime_utr;Parent=Msa0136300-mRNA-1
Gene Sequence

>Msa0136300

ATGGCAACCCTTCCCTCCATTCTCTCCTTCTCCTCCTCCTCCTCCTCTCTTCCTCTCCATCGCTTCCGTCCCTCTCCTTCCTTCTCTTTCTCTCCTCTTCGCTCAAATCCTACAAAATATCGTTCCCCCTTTCTTGTTCTCGCTTCTGCATCCCACTCCTCCAACGACTTTACCTCCAAGAAATCTGCTTTATCGGAGTTGATACAAGAAATTGAACCTTTAGATGTGAGTAATATTCAGAAAGATGTTCCGCCAACTACAGCTGATGCTATGAAAAGGACCATTTCTGGTATGTTGGGGTTGCTTCCATCTGATCAATTTAATGTCGTTGTTGAGGCTTTGTGGGAACCTCTTTCCAAGTTACTCATTTCTTCAATGATGACTGGGTATACATTGCGCAATGCTGAGTATAGGCTTTGTTTGGAGAAAACTCTTGACATTTGCGACAGAGATCTTGAGAAGCCGAAGGCAGAAAGTACTAAGTTTGACTTACAAGACTTCCTACGTGACAGTGTAAATGTTATTGACTTTGGTAGAAACAATAATTTGTCTTCCAAAGTTGAAAAGCCTCACGAGGACGTTGACATTCAAGACCTTGGTCAAATATCTGCCGAAGCTCAAGAATATATTTCTGGTCTGCAATCTCGTTTGTCTTCCATAAAAAAGTTATCTCAATTGCAGTTAGGCTACCGTTACATTGAACTCGTTTTCTCATATTTGTTTCTTTTCCTTCCTTTTTGGACACTTCTAAAGGAGCTACGTGAAGTGAAGAGGAAAAGTGCTGCTCTTCAAATGCAGCAATTTGTTGGAGAAGAAAAGAATGATTTACTGGATTACTTGAGATCGCTTCAACCTGAACAGGTAGCTCAGCTATCCGAATTTACATCCCCTGAGCTTAAGGACATCATCCTATCTGTTGTCCACGGTCTCCTTGCCACCCTTTCTCCTAAGATGCATTCAAAGCCCTCTACTACATCAGAGAATGCAACAGTTGGATCAGCAAATGCTGGGAATGAGGATTGTGCTGAGGTTGTTGAGAATTCTTCACTTAAATTTCAGCCTTTTATATCATTAACTCGGGACTATCTTGCCCGCCTGCTCTTTTGGTGCATGCTGTTGGGACACTATCTTAGAGGCCTTGAGTATCGAATGGAATTGGCGGAACTGCTATCCTTGACAAATGTTGCTGAGAATGGTGCTTCTGAGAATGAACAAATTGCTTGA
Protein sequence

>Msa0136300

MATLPSILSFSSSSSSLPLHRFRPSPSFSFSPLRSNPTKYRSPFLVLASASHSSNDFTSKKSALSELIQEIEPLDVSNIQKDVPPTTADAMKRTISGMLGLLPSDQFNVVVEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKTLDICDRDLEKPKAESTKFDLQDFLRDSVNVIDFGRNNNLSSKVEKPHEDVDIQDLGQISAEAQEYISGLQSRLSSIKKLSQLQLGYRYIELVFSYLFLFLPFWTLLKELREVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKDIILSVVHGLLATLSPKMHSKPSTTSENATVGSANAGNEDCAEVVENSSLKFQPFISLTRDYLARLLFWCMLLGHYLRGLEYRMELAELLSLTNVAENGASENEQIA*