AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550980 MtrunA17_Chr4g0035951 99.000 400 4 0 1 400 1 400 0.0 812
Msa0550980 MtrunA17_Chr4g0028361 98.750 400 5 0 1 400 1 400 0.0 811
Msa0550980 MtrunA17_Chr1g0208981 82.535 355 61 1 46 400 38 391 0.0 612
Msa0550980 MtrunA17_Chr4g0035981 95.359 237 11 0 164 400 4 240 3.29e-168 470
Msa0550980 MtrunA17_Chr5g0429051 56.818 352 147 4 53 400 8 358 2.23e-135 391
Msa0550980 MtrunA17_Chr7g0265821 56.534 352 148 4 53 400 8 358 3.76e-135 391
Msa0550980 MtrunA17_Chr5g0447091 56.374 353 150 3 51 400 6 357 2.42e-133 386
Msa0550980 MtrunA17_Chr1g0179211 54.830 352 154 4 53 400 8 358 6.04e-129 375
Msa0550980 MtrunA17_Chr4g0035971 90.000 140 12 2 1 140 1 138 2.51e-81 245
Msa0550980 MtrunA17_Chr5g0429031 57.619 210 88 1 45 253 41 250 3.24e-78 242
Msa0550980 MtrunA17_Chr5g0429021 53.030 132 58 3 272 400 1 131 3.98e-37 131
Msa0550980 MtrunA17_Chr7g0265811 46.809 94 26 1 157 250 21 90 3.15e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550980 AT2G21330.1 83.333 402 62 4 1 400 1 399 0.0 688
Msa0550980 AT4G38970.1 83.709 399 61 3 4 400 2 398 0.0 681
Msa0550980 AT2G21330.3 80.846 402 62 5 1 400 1 389 0.0 659
Msa0550980 AT2G01140.1 75.063 397 92 2 4 400 2 391 0.0 611
Msa0550980 AT2G21330.2 82.903 310 48 4 1 308 1 307 0.0 523
Msa0550980 AT4G38970.2 79.630 324 55 4 4 318 2 323 0.0 518
Msa0550980 AT4G26530.1 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0550980 AT4G26530.3 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0550980 AT4G26530.2 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0550980 AT2G36460.1 56.818 352 147 4 53 400 8 358 6.59e-135 390
Msa0550980 AT3G52930.1 55.682 352 151 4 53 400 8 358 4.88e-132 383
Msa0550980 AT5G03690.2 55.398 352 153 3 53 400 8 359 2.44e-129 376
Msa0550980 AT5G03690.1 51.000 400 182 5 7 400 2 393 1.04e-128 376
Msa0550980 AT4G26520.1 55.398 352 152 4 53 400 8 358 7.42e-127 370
Msa0550980 AT4G26520.3 55.556 351 151 4 53 399 8 357 1.47e-126 369
Msa0550980 AT4G26520.2 55.271 351 152 4 54 400 6 355 3.12e-126 368
Msa0550980 AT4G26520.4 55.271 351 152 4 54 400 6 355 3.12e-126 368
Msa0550980 AT2G36460.3 56.343 268 112 4 137 400 1 267 9.25e-99 295
Msa0550980 AT2G36460.2 56.343 268 112 4 137 400 1 267 9.25e-99 295
Msa0550980 AT5G03690.3 54.307 267 118 3 138 400 1 267 1.96e-91 276
Msa0550980 AT5G03690.4 54.307 267 118 3 138 400 1 267 1.96e-91 276

Find 151 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCCGGGCGTGGTATTT+TGG 0.165856 4_1:+46567530 Msa0550980:CDS
ACACCCAAATGTTTAAAATT+TGG 0.199558 4_1:+46569540 Msa0550980:three_prime_UTR
AACCTAAGGAAAATAATATT+AGG 0.245002 4_1:-46566255 None:intergenic
ATGTCTTCAATGCGGTATTT+TGG 0.245388 4_1:-46569123 None:intergenic
TTTGACGAACAATTCCTTCT+TGG 0.278555 4_1:-46569260 None:intergenic
GGCTGTCAAGGAAGCAGCCT+GGG 0.313883 4_1:+46568352 Msa0550980:CDS
GGGAAGCGTTTGGCTTCAAT+TGG 0.326689 4_1:+46567579 Msa0550980:CDS
GATGATAATTCATGCTTGTT+TGG 0.327277 4_1:-46566330 None:intergenic
TTGAAGTAGCACAAAAGGTT+TGG 0.329064 4_1:+46568714 Msa0550980:CDS
GTCCACGAAACCCAATTAAA+AGG 0.336300 4_1:+46569565 Msa0550980:three_prime_UTR
TTGTCCTTGCACTCAGCTCC+TGG 0.340552 4_1:-46568812 None:intergenic
CGTGCCATGGGTTTGGAGAT+TGG 0.341879 4_1:-46569075 None:intergenic
ACCATGATACCAGGGACAGC+TGG 0.345678 4_1:-46568893 None:intergenic
CAAGGAAGCAGCCTGGGGTT+TGG 0.347325 4_1:+46568358 Msa0550980:CDS
CTCTACCAATCTACAGTTGA+TGG 0.350484 4_1:+46567705 Msa0550980:CDS
AAGATCTCTGGTTCCACAAT+TGG 0.357070 4_1:-46568659 None:intergenic
ATCGAGCAAAACATTGTTCC+TGG 0.364320 4_1:+46567750 Msa0550980:CDS
GCCAGAGCAGAGGGACCGTT+TGG 0.371025 4_1:-46568332 None:intergenic
TGAGGAGAATGCCCTCAAAT+TGG 0.371449 4_1:-46568772 None:intergenic
TGAATCATGGTGCCAAGGTC+TGG 0.375096 4_1:+46568123 Msa0550980:CDS
TGAAGTAGCACAAAAGGTTT+GGG 0.375792 4_1:+46568715 Msa0550980:CDS
CATTACGTGGTTGAAATCAT+TGG 0.376955 4_1:-46566287 None:intergenic
CTCTGGTGCCATTCTCTTTG+AGG 0.388489 4_1:+46567677 Msa0550980:CDS
AACGACACGTGCCATGGGTT+TGG 0.390092 4_1:-46569082 None:intergenic
CCCAAACGGTCCCTCTGCTC+TGG 0.391022 4_1:+46568331 Msa0550980:CDS
CCCAGCTGTCCCTGGTATCA+TGG 0.393404 4_1:+46568892 Msa0550980:CDS
ACCTAAGGAAAATAATATTA+GGG 0.396861 4_1:-46566254 None:intergenic
TGGGTTTGGAGATTGGTTCA+TGG 0.399088 4_1:-46569068 None:intergenic
TGGCTGTCAAGGAAGCAGCC+TGG 0.407019 4_1:+46568351 Msa0550980:CDS
CAATTCCTTCTTGGCTTCCT+CGG 0.408353 4_1:-46569251 None:intergenic
CCATGCTTGGCGGTTAGCTT+CGG 0.415377 4_1:-46567613 None:intergenic
TGCTACATGTGGGAAGCGTT+TGG 0.419407 4_1:+46567569 Msa0550980:CDS
CTTGTGACAGTTCCATCACT+TGG 0.443187 4_1:+46567645 Msa0550980:CDS
TCCTTCCATCAACTGTAGAT+TGG 0.444723 4_1:-46567710 None:intergenic
TAGGGTCTGGTGCCCCTAGC+TGG 0.446675 4_1:+46568091 Msa0550980:intron
GGCGTATGAACCAGCTCTAA+TGG 0.449196 4_1:-46566661 None:intergenic
AGCACAAAAGGTTTGGGCTG+AGG 0.454604 4_1:+46568721 Msa0550980:CDS
GTCAAGTGATGTCTCATTTG+CGG 0.454726 4_1:-46566388 None:intergenic
AAGGTGCTCGTTTCGCCAAA+TGG 0.465409 4_1:+46568182 Msa0550980:CDS
TTGAGCAATTGAGTTGGACT+TGG 0.467054 4_1:-46569200 None:intergenic
TTGTTCTTGACAAGTCTGAA+TGG 0.468236 4_1:+46566559 Msa0550980:CDS
GAACCAGAGATCTTGCTTGA+TGG 0.472497 4_1:+46568668 Msa0550980:CDS
GTTCATGGCATTCAAGTTGA+GGG 0.472908 4_1:-46569053 None:intergenic
TGAGAACAATGTCCAATTTG+AGG 0.474283 4_1:+46568760 Msa0550980:CDS
TCCAACTCAATTGCTCAACT+TGG 0.475986 4_1:+46569205 Msa0550980:CDS
AGATCTCTGGTTCCACAATT+GGG 0.476937 4_1:-46568658 None:intergenic
TGGCGAAACGAGCACCTTGT+TGG 0.482452 4_1:-46568177 None:intergenic
CATGGCCAAAATACCACGCC+CGG 0.484879 4_1:-46567535 None:intergenic
CCAGAGCAGAGGGACCGTTT+GGG 0.485801 4_1:-46568331 None:intergenic
ACCTTGTCAACTTTGATACC+AGG 0.493112 4_1:-46567768 None:intergenic
TCGCTATGCTGCAATTAGTC+AGG 0.494622 4_1:+46568382 Msa0550980:CDS
TGCAACCCTACTGCTCCATC+AGG 0.494718 4_1:+46566633 Msa0550980:CDS
CAAGAAGGGTACGCCATGCT+TGG 0.498533 4_1:-46567626 None:intergenic
TCCACATGTCAAGTGAAGAT+AGG 0.499481 4_1:+46566351 Msa0550980:five_prime_UTR
GGAAGCGTTTGGCTTCAATT+GGG 0.502252 4_1:+46567580 Msa0550980:CDS
CAATGATTTCAACCACGTAA+TGG 0.508557 4_1:+46566288 Msa0550980:five_prime_UTR
CAGAAAACAATTGCTTCACC+CGG 0.510404 4_1:+46567516 Msa0550980:intron
AGTGTAAGAACTAAGAACTA+TGG 0.510513 4_1:+46566503 Msa0550980:intron
ATTCATCGTTGGAACCAGCT+AGG 0.510943 4_1:-46568105 None:intergenic
TCCCTCTGCTCTGGCTGTCA+AGG 0.511447 4_1:+46568340 Msa0550980:CDS
TCACTTGGAGAGTATATCTC+TGG 0.513608 4_1:+46567660 Msa0550980:CDS
TGTTCTTGACAAGTCTGAAT+GGG 0.513891 4_1:+46566560 Msa0550980:CDS
GAGAACAATGTCCAATTTGA+GGG 0.514083 4_1:+46568761 Msa0550980:CDS
TTCATCGTTGGAACCAGCTA+GGG 0.515096 4_1:-46568104 None:intergenic
GCTCTAATGGTAAGACCTGA+TGG 0.519825 4_1:-46566648 None:intergenic
TTCTCCTGTGAAGGAGCTTG+AGG 0.524713 4_1:-46568865 None:intergenic
AGGCAAGACCGTCCAGACCT+TGG 0.525040 4_1:-46568135 None:intergenic
GGTTCATGGCATTCAAGTTG+AGG 0.530771 4_1:-46569054 None:intergenic
CAACGGATTGGTCCCAATTG+TGG 0.534112 4_1:+46568646 Msa0550980:CDS
GTATAGTCAGCAACTGTGGC+AGG 0.534125 4_1:-46568842 None:intergenic
TATGAGAACGACACGTGCCA+TGG 0.534333 4_1:-46569088 None:intergenic
ATACCCTCAAGCTCCTTCAC+AGG 0.534468 4_1:+46568861 Msa0550980:CDS
TCAGGTCTTACCATTAGAGC+TGG 0.535329 4_1:+46566651 Msa0550980:CDS
GTAAGACCTGATGGAGCAGT+AGG 0.536429 4_1:-46566639 None:intergenic
GCAGTTAATGATGGTGTTGA+CGG 0.536739 4_1:+46569349 Msa0550980:three_prime_UTR
AGCATAGCGAGCCAAACCCC+AGG 0.539660 4_1:-46568369 None:intergenic
TCTCCATCAAGCAAGATCTC+TGG 0.540606 4_1:-46568671 None:intergenic
TCTCCTGTGAAGGAGCTTGA+GGG 0.542263 4_1:-46568864 None:intergenic
CCATGATACCAGGGACAGCT+GGG 0.545501 4_1:-46568892 None:intergenic
AAAATACCGCATTGAAGACA+TGG 0.548809 4_1:+46569125 Msa0550980:CDS
GAGAGTTTCCTCAAAGAGAA+TGG 0.549338 4_1:-46567685 None:intergenic
AAGCCTAGCATGGTTACTCC+AGG 0.551395 4_1:+46568794 Msa0550980:CDS
AGAAGAAGGTTGACGTAGGA+GGG 0.553419 4_1:-46566595 None:intergenic
GCTCCTGGAGTAACCATGCT+AGG 0.553694 4_1:-46568797 None:intergenic
GAAGGGTACGCCATGCTTGG+CGG 0.555457 4_1:-46567623 None:intergenic
GTCAGCAACTGTGGCAGGAG+AGG 0.555780 4_1:-46568837 None:intergenic
GCCTATCTTCACTTGACATG+TGG 0.556552 4_1:-46566352 None:intergenic
TCCTTGACAGCCAGAGCAGA+GGG 0.557055 4_1:-46568341 None:intergenic
CGCGGTCTTGACGAGCTCAT+CGG 0.558858 4_1:-46566682 None:intergenic
TCCAAGTTGAGCAATTGAGT+TGG 0.559400 4_1:-46569206 None:intergenic
CTGGTTCCAACGATGAATCA+TGG 0.559760 4_1:+46568110 Msa0550980:CDS
TAGAAGAAGGTTGACGTAGG+AGG 0.563073 4_1:-46566596 None:intergenic
ACGCTTCCCACATGTAGCAT+TGG 0.563790 4_1:-46567565 None:intergenic
TGAATCCGAGGAAGCCAAGA+AGG 0.564271 4_1:+46569246 Msa0550980:CDS
ACAATTGCTTCACCCGGGCG+TGG 0.565967 4_1:+46567522 Msa0550980:CDS
ATCTTGCTTGATGGAGAACA+TGG 0.567139 4_1:+46568677 Msa0550980:CDS
TACTCCAGGAGCTGAGTGCA+AGG 0.568532 4_1:+46568808 Msa0550980:CDS
GTGATGGAACTGTCACAAGA+AGG 0.571260 4_1:-46567641 None:intergenic
AAGAAGGAATTGTTCGTCAA+AGG 0.571329 4_1:+46569262 Msa0550980:CDS
CTTACAACAGACATAGAAGA+AGG 0.572337 4_1:-46566609 None:intergenic
GGTTTATTAGGACAACGGAT+TGG 0.572758 4_1:+46568634 Msa0550980:intron
TGTAGCATTGGACTCATCCA+TGG 0.576571 4_1:-46567553 None:intergenic
AGGAGCTGAGTGCAAGGACA+AGG 0.577780 4_1:+46568814 Msa0550980:CDS
GTGTCACATACCATGATACC+AGG 0.579988 4_1:-46568902 None:intergenic
TGACAAGTCTGAATGGGTGA+AGG 0.580261 4_1:+46566566 Msa0550980:CDS
GAGATATACTCTCCAAGTGA+TGG 0.582405 4_1:-46567657 None:intergenic
CCGAAGCTAACCGCCAAGCA+TGG 0.583140 4_1:+46567613 Msa0550980:CDS
TTGGCACCATGATTCATCGT+TGG 0.586333 4_1:-46568116 None:intergenic
CACTGGTGAGGGTGAATCCG+AGG 0.587935 4_1:+46569234 Msa0550980:CDS
AACGATGAATCATGGTGCCA+AGG 0.589365 4_1:+46568118 Msa0550980:CDS
CATTCTCCTCAAGCCTAGCA+TGG 0.591042 4_1:+46568784 Msa0550980:CDS
GACAAGTCTGAATGGGTGAA+GGG 0.591129 4_1:+46566567 Msa0550980:CDS
GCAGCACTAGCAGTTAATGA+TGG 0.594980 4_1:+46569340 Msa0550980:three_prime_UTR
ATGAGAACGACACGTGCCAT+GGG 0.596886 4_1:-46569087 None:intergenic
GCTGTCAAGGAAGCAGCCTG+GGG 0.597669 4_1:+46568353 Msa0550980:CDS
TCCTGGTATCAAAGTTGACA+AGG 0.599517 4_1:+46567767 Msa0550980:CDS
ATTGGACATTGTTCTCAGCA+AGG 0.604841 4_1:-46568754 None:intergenic
ACCAATCTACAGTTGATGGA+AGG 0.606822 4_1:+46567709 Msa0550980:CDS
TCATGGTGCCAAGGTCTGGA+CGG 0.610100 4_1:+46568127 Msa0550980:CDS
TGATGGAACTGTCACAAGAA+GGG 0.610460 4_1:-46567640 None:intergenic
TTAATGGTTTATTAGGACAA+CGG 0.610985 4_1:+46568629 Msa0550980:intron
GAGTAACCATGCTAGGCTTG+AGG 0.616311 4_1:-46568790 None:intergenic
CTTGGAAAGTACACTGGTGA+GGG 0.616339 4_1:+46569223 Msa0550980:CDS
CAATTGAGTTGGACTTGGCG+CGG 0.616785 4_1:-46569195 None:intergenic
TTCCTTGACAGCCAGAGCAG+AGG 0.621508 4_1:-46568342 None:intergenic
ACAGTTGTGAGCATCCCAAA+CGG 0.623689 4_1:+46568317 Msa0550980:CDS
AAATACCGCATTGAAGACAT+GGG 0.626712 4_1:+46569126 Msa0550980:CDS
ACTTGGAAAGTACACTGGTG+AGG 0.631708 4_1:+46569222 Msa0550980:CDS
ATGGCCAAAATACCACGCCC+GGG 0.644348 4_1:-46567534 None:intergenic
ACCGCATTGAAGACATGGGG+AGG 0.644971 4_1:+46569130 Msa0550980:CDS
TAAGACCTGATGGAGCAGTA+GGG 0.647498 4_1:-46566638 None:intergenic
TGAACCAATCTCCAAACCCA+TGG 0.649676 4_1:+46569071 Msa0550980:CDS
GAGGGTATAGTCAGCAACTG+TGG 0.652280 4_1:-46568846 None:intergenic
GTAGTATGCAGCTGAACGAG+AGG 0.655895 4_1:-46568155 None:intergenic
GCTCAACTTGGAAAGTACAC+TGG 0.658104 4_1:+46569217 Msa0550980:CDS
CATGATACCAGGGACAGCTG+GGG 0.665632 4_1:-46568891 None:intergenic
GATGAGTCCAATGCTACATG+TGG 0.669307 4_1:+46567558 Msa0550980:CDS
AGGCCGCGCAGAGAACGTGA+AGG 0.669516 4_1:+46569150 Msa0550980:CDS
ATGATACCAGGGACAGCTGG+GGG 0.672628 4_1:-46568890 None:intergenic
AGAAAACAATTGCTTCACCC+GGG 0.673634 4_1:+46567517 Msa0550980:intron
TCATCGTTGGAACCAGCTAG+GGG 0.675575 4_1:-46568103 None:intergenic
CAATATGCATCACCATTACG+TGG 0.680363 4_1:-46566300 None:intergenic
ACATAGAAGAAGGTTGACGT+AGG 0.687898 4_1:-46566599 None:intergenic
CTGCCTTCACGTTCTCTGCG+CGG 0.701188 4_1:-46569153 None:intergenic
GCCTCCCCATGTCTTCAATG+CGG 0.705321 4_1:-46569131 None:intergenic
CGATGAGCTCGTCAAGACCG+CGG 0.707845 4_1:+46566683 Msa0550980:CDS
TCAGCTGCATACTACCAACA+AGG 0.710256 4_1:+46568163 Msa0550980:CDS
GTTAATGATGGTGTTGACGG+AGG 0.728084 4_1:+46569352 Msa0550980:three_prime_UTR
TGTCACATACCATGATACCA+GGG 0.730745 4_1:-46568901 None:intergenic
AATACCGCATTGAAGACATG+GGG 0.731314 4_1:+46569127 Msa0550980:CDS
ATGAGTCCAATGCTACATGT+GGG 0.746520 4_1:+46567559 Msa0550980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCATAATAATATACAT+CGG - chr4_1:46567888-46567907 None:intergenic 10.0%
!!! GATTTTTTTTTTTTTTTTTG+TGG + chr4_1:46569444-46569463 Msa0550980:intron 10.0%
!! ATTGTTAGTATTATTATGTT+AGG + chr4_1:46566754-46566773 Msa0550980:intron 15.0%
!! ACCTAAGGAAAATAATATTA+GGG - chr4_1:46566257-46566276 None:intergenic 20.0%
!! AACCTAAGGAAAATAATATT+AGG - chr4_1:46566258-46566277 None:intergenic 20.0%
!!! GTAAAAGTATAAGATACTTT+TGG + chr4_1:46567013-46567032 Msa0550980:intron 20.0%
!!! ATAAGCTATTTTTATAGCAA+AGG + chr4_1:46567099-46567118 Msa0550980:intron 20.0%
!!! TGCAATATTTTATGTTTCAT+TGG + chr4_1:46567451-46567470 Msa0550980:intron 20.0%
!! TTCATATTATTGTTTATGTC+AGG - chr4_1:46567998-46568017 None:intergenic 20.0%
!! ACAAATTTCAATTGCATATT+AGG + chr4_1:46568291-46568310 Msa0550980:intron 20.0%
!! AATCACTTATACAATTTGAA+TGG - chr4_1:46568416-46568435 None:intergenic 20.0%
!! AAAGAATAATGTTACGTATT+TGG - chr4_1:46568931-46568950 None:intergenic 20.0%
!!! TGTGTAATATTTTATAGTCT+TGG + chr4_1:46569410-46569429 Msa0550980:three_prime_UTR 20.0%
!!! ATATTTTATTGAAGTCGTAA+AGG - chr4_1:46569484-46569503 None:intergenic 20.0%
!!! TTATATCTCTCCTTTTAATT+GGG - chr4_1:46569578-46569597 None:intergenic 20.0%
!!! TTTATATCTCTCCTTTTAAT+TGG - chr4_1:46569579-46569598 None:intergenic 20.0%
!! TCCCTAATATTATTTTCCTT+AGG + chr4_1:46566253-46566272 Msa0550980:five_prime_UTR 25.0%
!!! ATTGGTTTTTTTCTAACCTA+AGG - chr4_1:46566272-46566291 None:intergenic 25.0%
!!! ACATTTTCTGGTATAAACAA+TGG + chr4_1:46566981-46567000 Msa0550980:intron 25.0%
! TCCAAGATAGCTTATAAAAA+CGG - chr4_1:46567164-46567183 None:intergenic 25.0%
! AATTGATGAAAAGAATAAGC+AGG + chr4_1:46567854-46567873 Msa0550980:intron 25.0%
! TCTAATAGAGTGATATCATT+TGG + chr4_1:46567928-46567947 Msa0550980:intron 25.0%
! TTTATGTGTCATGAACAATA+GGG + chr4_1:46568073-46568092 Msa0550980:intron 25.0%
! ATATGCAATTGAAATTTGTG+TGG - chr4_1:46568290-46568309 None:intergenic 25.0%
! GTCAAATACAATTTGTACAT+AGG - chr4_1:46568540-46568559 None:intergenic 25.0%
! TATTTGACTAGAATGTTCTT+TGG + chr4_1:46568552-46568571 Msa0550980:intron 25.0%
! GCTAAAATATGTCCATTTAA+TGG + chr4_1:46568613-46568632 Msa0550980:intron 25.0%
! TGTCCATTTAATGGTTTATT+AGG + chr4_1:46568622-46568641 Msa0550980:intron 25.0%
! TGTCCTAATAAACCATTAAA+TGG - chr4_1:46568628-46568647 None:intergenic 25.0%
! TTAATGGTTTATTAGGACAA+CGG + chr4_1:46568629-46568648 Msa0550980:intron 25.0%
!! ACACCCAAATGTTTAAAATT+TGG + chr4_1:46569540-46569559 Msa0550980:three_prime_UTR 25.0%
!! CTGCCAAATTTTAAACATTT+GGG - chr4_1:46569546-46569565 None:intergenic 25.0%
!! ACTGCCAAATTTTAAACATT+TGG - chr4_1:46569547-46569566 None:intergenic 25.0%
GATGATAATTCATGCTTGTT+TGG - chr4_1:46566333-46566352 None:intergenic 30.0%
!! AAGCAGTTAATGTTTTTGTG+TGG + chr4_1:46566428-46566447 Msa0550980:five_prime_UTR 30.0%
AGTGTAAGAACTAAGAACTA+TGG + chr4_1:46566503-46566522 Msa0550980:intron 30.0%
!! AAAGAGAAAAAAAAGTACCG+CGG - chr4_1:46566703-46566722 None:intergenic 30.0%
!!! ATGAGATGCTTCTAGTTTTA+AGG - chr4_1:46566841-46566860 None:intergenic 30.0%
GACAATCAAATTGATACATG+TGG + chr4_1:46566943-46566962 Msa0550980:intron 30.0%
!! TCCGTTTTTATAAGCTATCT+TGG + chr4_1:46567160-46567179 Msa0550980:intron 30.0%
TAAAGTGATGTGACATAGAA+TGG + chr4_1:46567366-46567385 Msa0550980:intron 30.0%
CAACAGAATGTAATTCCAAA+TGG - chr4_1:46567797-46567816 None:intergenic 30.0%
ACATGACAGATCTTTATGTA+TGG - chr4_1:46567972-46567991 None:intergenic 30.0%
GTTTATGTGTCATGAACAAT+AGG + chr4_1:46568072-46568091 Msa0550980:intron 30.0%
! ATTCTGATTTTGCTTCCATA+GGG - chr4_1:46568230-46568249 None:intergenic 30.0%
! AATTCTGATTTTGCTTCCAT+AGG - chr4_1:46568231-46568250 None:intergenic 30.0%
!!! AGATTTTTTTGTCTTAGCAG+CGG + chr4_1:46568508-46568527 Msa0550980:intron 30.0%
! ATGAGTGTGATTTAAAACCT+TGG + chr4_1:46568591-46568610 Msa0550980:intron 30.0%
!!! AAATGGACATATTTTAGCCA+AGG - chr4_1:46568611-46568630 None:intergenic 30.0%
!!! AACTTTTGAAGTAGCACAAA+AGG + chr4_1:46568709-46568728 Msa0550980:CDS 30.0%
TTGCTTACTAAAGCTGTATT+TGG + chr4_1:46568986-46569005 Msa0550980:intron 30.0%
! GCTATGTATAGTTTTTGTCT+GGG + chr4_1:46569008-46569027 Msa0550980:intron 30.0%
! CTATGTATAGTTTTTGTCTG+GGG + chr4_1:46569009-46569028 Msa0550980:intron 30.0%
! TATGTATAGTTTTTGTCTGG+GGG + chr4_1:46569010-46569029 Msa0550980:intron 30.0%
GCTACTCTTACTAAAAATGT+TGG + chr4_1:46569284-46569303 Msa0550980:exon 30.0%
CATTACGTGGTTGAAATCAT+TGG - chr4_1:46566290-46566309 None:intergenic 35.0%
CAATGATTTCAACCACGTAA+TGG + chr4_1:46566288-46566307 Msa0550980:five_prime_UTR 35.0%
TTGTTCTTGACAAGTCTGAA+TGG + chr4_1:46566559-46566578 Msa0550980:CDS 35.0%
TGTTCTTGACAAGTCTGAAT+GGG + chr4_1:46566560-46566579 Msa0550980:CDS 35.0%
CTTACAACAGACATAGAAGA+AGG - chr4_1:46566612-46566631 None:intergenic 35.0%
CGGAATAATAAAGAAGTGGA+GGG - chr4_1:46566793-46566812 None:intergenic 35.0%
GAAGCGGAATAATAAAGAAG+TGG - chr4_1:46566797-46566816 None:intergenic 35.0%
!!! AGATGCTTCTAGTTTTAAGG+TGG - chr4_1:46566838-46566857 None:intergenic 35.0%
CCAGAAAATGTTCTTACAAC+TGG - chr4_1:46566972-46566991 None:intergenic 35.0%
! CCAGTTGTAAGAACATTTTC+TGG + chr4_1:46566969-46566988 Msa0550980:intron 35.0%
GTCTCACAATTGCTTATATC+AGG + chr4_1:46567256-46567275 Msa0550980:intron 35.0%
AAATGAATTCAAGAGTCCCA+AGG + chr4_1:46567294-46567313 Msa0550980:intron 35.0%
!!! TTGTTTTTGTTGCTTGTGTG+TGG + chr4_1:46567490-46567509 Msa0550980:intron 35.0%
CAGACATGATGTTTAACGTA+TGG + chr4_1:46568050-46568069 Msa0550980:intron 35.0%
! TTCTGATTTTGCTTCCATAG+GGG - chr4_1:46568229-46568248 None:intergenic 35.0%
TTGACGTTGCATGATAATCA+GGG - chr4_1:46568489-46568508 None:intergenic 35.0%
TTGAAGTAGCACAAAAGGTT+TGG + chr4_1:46568714-46568733 Msa0550980:CDS 35.0%
TGAAGTAGCACAAAAGGTTT+GGG + chr4_1:46568715-46568734 Msa0550980:CDS 35.0%
TGAGAACAATGTCCAATTTG+AGG + chr4_1:46568760-46568779 Msa0550980:CDS 35.0%
GAGAACAATGTCCAATTTGA+GGG + chr4_1:46568761-46568780 Msa0550980:CDS 35.0%
! GGCTATGTATAGTTTTTGTC+TGG + chr4_1:46569007-46569026 Msa0550980:intron 35.0%
! ATGTCTTCAATGCGGTATTT+TGG - chr4_1:46569126-46569145 None:intergenic 35.0%
AAAATACCGCATTGAAGACA+TGG + chr4_1:46569125-46569144 Msa0550980:CDS 35.0%
AAATACCGCATTGAAGACAT+GGG + chr4_1:46569126-46569145 Msa0550980:CDS 35.0%
TTTGACGAACAATTCCTTCT+TGG - chr4_1:46569263-46569282 None:intergenic 35.0%
AAGAAGGAATTGTTCGTCAA+AGG + chr4_1:46569262-46569281 Msa0550980:CDS 35.0%
CAATATGCATCACCATTACG+TGG - chr4_1:46566303-46566322 None:intergenic 40.0%
TCCACATGTCAAGTGAAGAT+AGG + chr4_1:46566351-46566370 Msa0550980:five_prime_UTR 40.0%
GTCAAGTGATGTCTCATTTG+CGG - chr4_1:46566391-46566410 None:intergenic 40.0%
ACATAGAAGAAGGTTGACGT+AGG - chr4_1:46566602-46566621 None:intergenic 40.0%
GCGGAATAATAAAGAAGTGG+AGG - chr4_1:46566794-46566813 None:intergenic 40.0%
!!! TTCTAGTTTTAAGGTGGCTG+TGG - chr4_1:46566832-46566851 None:intergenic 40.0%
CACTTATAGATAAGCGCTCA+AGG + chr4_1:46567054-46567073 Msa0550980:intron 40.0%
CAGAAAACAATTGCTTCACC+CGG + chr4_1:46567516-46567535 Msa0550980:intron 40.0%
AGAAAACAATTGCTTCACCC+GGG + chr4_1:46567517-46567536 Msa0550980:intron 40.0%
ATGAGTCCAATGCTACATGT+GGG + chr4_1:46567559-46567578 Msa0550980:CDS 40.0%
TGATGGAACTGTCACAAGAA+GGG - chr4_1:46567643-46567662 None:intergenic 40.0%
GAGATATACTCTCCAAGTGA+TGG - chr4_1:46567660-46567679 None:intergenic 40.0%
! TCACTTGGAGAGTATATCTC+TGG + chr4_1:46567660-46567679 Msa0550980:CDS 40.0%
GAGAGTTTCCTCAAAGAGAA+TGG - chr4_1:46567688-46567707 None:intergenic 40.0%
CTCTACCAATCTACAGTTGA+TGG + chr4_1:46567705-46567724 Msa0550980:CDS 40.0%
!! ACCAATCTACAGTTGATGGA+AGG + chr4_1:46567709-46567728 Msa0550980:CDS 40.0%
TCCTTCCATCAACTGTAGAT+TGG - chr4_1:46567713-46567732 None:intergenic 40.0%
ATCGAGCAAAACATTGTTCC+TGG + chr4_1:46567750-46567769 Msa0550980:CDS 40.0%
TCCTGGTATCAAAGTTGACA+AGG + chr4_1:46567767-46567786 Msa0550980:CDS 40.0%
ACCTTGTCAACTTTGATACC+AGG - chr4_1:46567771-46567790 None:intergenic 40.0%
AGTTGACAAGGTAAGCCATT+TGG + chr4_1:46567779-46567798 Msa0550980:intron 40.0%
! TCTGATTTTGCTTCCATAGG+GGG - chr4_1:46568228-46568247 None:intergenic 40.0%
CTTGACGTTGCATGATAATC+AGG - chr4_1:46568490-46568509 None:intergenic 40.0%
GGTTTATTAGGACAACGGAT+TGG + chr4_1:46568634-46568653 Msa0550980:intron 40.0%
! AGATCTCTGGTTCCACAATT+GGG - chr4_1:46568661-46568680 None:intergenic 40.0%
! AAGATCTCTGGTTCCACAAT+TGG - chr4_1:46568662-46568681 None:intergenic 40.0%
ATCTTGCTTGATGGAGAACA+TGG + chr4_1:46568677-46568696 Msa0550980:CDS 40.0%
ATTGGACATTGTTCTCAGCA+AGG - chr4_1:46568757-46568776 None:intergenic 40.0%
TGTCACATACCATGATACCA+GGG - chr4_1:46568904-46568923 None:intergenic 40.0%
!! GTTCATGGCATTCAAGTTGA+GGG - chr4_1:46569056-46569075 None:intergenic 40.0%
AATACCGCATTGAAGACATG+GGG + chr4_1:46569127-46569146 Msa0550980:CDS 40.0%
!! TTGAGCAATTGAGTTGGACT+TGG - chr4_1:46569203-46569222 None:intergenic 40.0%
TCCAACTCAATTGCTCAACT+TGG + chr4_1:46569205-46569224 Msa0550980:CDS 40.0%
! TCCAAGTTGAGCAATTGAGT+TGG - chr4_1:46569209-46569228 None:intergenic 40.0%
! GCAGTTAATGATGGTGTTGA+CGG + chr4_1:46569349-46569368 Msa0550980:three_prime_UTR 40.0%
GTCCACGAAACCCAATTAAA+AGG + chr4_1:46569565-46569584 Msa0550980:three_prime_UTR 40.0%
!! CTCCTTTTAATTGGGTTTCG+TGG - chr4_1:46569570-46569589 None:intergenic 40.0%
GCCTATCTTCACTTGACATG+TGG - chr4_1:46566355-46566374 None:intergenic 45.0%
TGACAAGTCTGAATGGGTGA+AGG + chr4_1:46566566-46566585 Msa0550980:CDS 45.0%
GACAAGTCTGAATGGGTGAA+GGG + chr4_1:46566567-46566586 Msa0550980:CDS 45.0%
AGAAGAAGGTTGACGTAGGA+GGG - chr4_1:46566598-46566617 None:intergenic 45.0%
TAGAAGAAGGTTGACGTAGG+AGG - chr4_1:46566599-46566618 None:intergenic 45.0%
TAAGACCTGATGGAGCAGTA+GGG - chr4_1:46566641-46566660 None:intergenic 45.0%
GCTCTAATGGTAAGACCTGA+TGG - chr4_1:46566651-46566670 None:intergenic 45.0%
TCAGGTCTTACCATTAGAGC+TGG + chr4_1:46566651-46566670 Msa0550980:CDS 45.0%
!!! TAGTTTTAAGGTGGCTGTGG+TGG - chr4_1:46566829-46566848 None:intergenic 45.0%
! TGTAGCATTGGACTCATCCA+TGG - chr4_1:46567556-46567575 None:intergenic 45.0%
GATGAGTCCAATGCTACATG+TGG + chr4_1:46567558-46567577 Msa0550980:CDS 45.0%
!! GGAAGCGTTTGGCTTCAATT+GGG + chr4_1:46567580-46567599 Msa0550980:CDS 45.0%
! GTGATGGAACTGTCACAAGA+AGG - chr4_1:46567644-46567663 None:intergenic 45.0%
CTTGTGACAGTTCCATCACT+TGG + chr4_1:46567645-46567664 Msa0550980:CDS 45.0%
GTGTCATGAACAATAGGGTC+TGG + chr4_1:46568078-46568097 Msa0550980:intron 45.0%
TTCATCGTTGGAACCAGCTA+GGG - chr4_1:46568107-46568126 None:intergenic 45.0%
ATTCATCGTTGGAACCAGCT+AGG - chr4_1:46568108-46568127 None:intergenic 45.0%
CTGGTTCCAACGATGAATCA+TGG + chr4_1:46568110-46568129 Msa0550980:CDS 45.0%
TTGGCACCATGATTCATCGT+TGG - chr4_1:46568119-46568138 None:intergenic 45.0%
! AACGATGAATCATGGTGCCA+AGG + chr4_1:46568118-46568137 Msa0550980:CDS 45.0%
TCAGCTGCATACTACCAACA+AGG + chr4_1:46568163-46568182 Msa0550980:CDS 45.0%
ACAGTTGTGAGCATCCCAAA+CGG + chr4_1:46568317-46568336 Msa0550980:CDS 45.0%
TCGCTATGCTGCAATTAGTC+AGG + chr4_1:46568382-46568401 Msa0550980:CDS 45.0%
TTGCATGATAATCAGGGTCG+TGG - chr4_1:46568483-46568502 None:intergenic 45.0%
GAACCAGAGATCTTGCTTGA+TGG + chr4_1:46568668-46568687 Msa0550980:CDS 45.0%
TCTCCATCAAGCAAGATCTC+TGG - chr4_1:46568674-46568693 None:intergenic 45.0%
TGAGGAGAATGCCCTCAAAT+TGG - chr4_1:46568775-46568794 None:intergenic 45.0%
GTGTCACATACCATGATACC+AGG - chr4_1:46568905-46568924 None:intergenic 45.0%
!! GGTTCATGGCATTCAAGTTG+AGG - chr4_1:46569057-46569076 None:intergenic 45.0%
! TGGGTTTGGAGATTGGTTCA+TGG - chr4_1:46569071-46569090 None:intergenic 45.0%
TGAACCAATCTCCAAACCCA+TGG + chr4_1:46569071-46569090 Msa0550980:CDS 45.0%
! GCTCAACTTGGAAAGTACAC+TGG + chr4_1:46569217-46569236 Msa0550980:CDS 45.0%
! ACTTGGAAAGTACACTGGTG+AGG + chr4_1:46569222-46569241 Msa0550980:CDS 45.0%
! CTTGGAAAGTACACTGGTGA+GGG + chr4_1:46569223-46569242 Msa0550980:CDS 45.0%
CAATTCCTTCTTGGCTTCCT+CGG - chr4_1:46569254-46569273 None:intergenic 45.0%
GCAGCACTAGCAGTTAATGA+TGG + chr4_1:46569340-46569359 Msa0550980:three_prime_UTR 45.0%
!! GTTAATGATGGTGTTGACGG+AGG + chr4_1:46569352-46569371 Msa0550980:three_prime_UTR 45.0%
GTAAGACCTGATGGAGCAGT+AGG - chr4_1:46566642-46566661 None:intergenic 50.0%
! GGCGTATGAACCAGCTCTAA+TGG - chr4_1:46566664-46566683 None:intergenic 50.0%
! GTGGTGGAGGAGTTAAGAAG+CGG - chr4_1:46566813-46566832 None:intergenic 50.0%
!!! TTTTAAGGTGGCTGTGGTGG+AGG - chr4_1:46566826-46566845 None:intergenic 50.0%
AGTCCCAAGGTCTAAGAGAG+AGG + chr4_1:46567307-46567326 Msa0550980:intron 50.0%
GTCCCAAGGTCTAAGAGAGA+GGG + chr4_1:46567308-46567327 Msa0550980:intron 50.0%
CTCCCTCTCTCTTAGACCTT+GGG - chr4_1:46567313-46567332 None:intergenic 50.0%
TCTCCCTCTCTCTTAGACCT+TGG - chr4_1:46567314-46567333 None:intergenic 50.0%
AGGTCTAAGAGAGAGGGAGA+AGG + chr4_1:46567314-46567333 Msa0550980:intron 50.0%
ACGCTTCCCACATGTAGCAT+TGG - chr4_1:46567568-46567587 None:intergenic 50.0%
!! TGCTACATGTGGGAAGCGTT+TGG + chr4_1:46567569-46567588 Msa0550980:CDS 50.0%
!! GGGAAGCGTTTGGCTTCAAT+TGG + chr4_1:46567579-46567598 Msa0550980:CDS 50.0%
!! CTCTGGTGCCATTCTCTTTG+AGG + chr4_1:46567677-46567696 Msa0550980:CDS 50.0%
TCATCGTTGGAACCAGCTAG+GGG - chr4_1:46568106-46568125 None:intergenic 50.0%
! TGAATCATGGTGCCAAGGTC+TGG + chr4_1:46568123-46568142 Msa0550980:CDS 50.0%
GTAGTATGCAGCTGAACGAG+AGG - chr4_1:46568158-46568177 None:intergenic 50.0%
! AAGGTGCTCGTTTCGCCAAA+TGG + chr4_1:46568182-46568201 Msa0550980:CDS 50.0%
!! CAACGGATTGGTCCCAATTG+TGG + chr4_1:46568646-46568665 Msa0550980:CDS 50.0%
AGCACAAAAGGTTTGGGCTG+AGG + chr4_1:46568721-46568740 Msa0550980:CDS 50.0%
CATTCTCCTCAAGCCTAGCA+TGG + chr4_1:46568784-46568803 Msa0550980:CDS 50.0%
GAGTAACCATGCTAGGCTTG+AGG - chr4_1:46568793-46568812 None:intergenic 50.0%
AAGCCTAGCATGGTTACTCC+AGG + chr4_1:46568794-46568813 Msa0550980:CDS 50.0%
GTATAGTCAGCAACTGTGGC+AGG - chr4_1:46568845-46568864 None:intergenic 50.0%
! GAGGGTATAGTCAGCAACTG+TGG - chr4_1:46568849-46568868 None:intergenic 50.0%
ATACCCTCAAGCTCCTTCAC+AGG + chr4_1:46568861-46568880 Msa0550980:CDS 50.0%
TCTCCTGTGAAGGAGCTTGA+GGG - chr4_1:46568867-46568886 None:intergenic 50.0%
TTCTCCTGTGAAGGAGCTTG+AGG - chr4_1:46568868-46568887 None:intergenic 50.0%
TTTGTCTGGGGGACAATCTG+AGG + chr4_1:46569021-46569040 Msa0550980:CDS 50.0%
ATGAGAACGACACGTGCCAT+GGG - chr4_1:46569090-46569109 None:intergenic 50.0%
TATGAGAACGACACGTGCCA+TGG - chr4_1:46569091-46569110 None:intergenic 50.0%
!! CAATTGAGTTGGACTTGGCG+CGG - chr4_1:46569198-46569217 None:intergenic 50.0%
TGAATCCGAGGAAGCCAAGA+AGG + chr4_1:46569246-46569265 Msa0550980:CDS 50.0%
TGCAACCCTACTGCTCCATC+AGG + chr4_1:46566633-46566652 Msa0550980:CDS 55.0%
! TTCACCCGGGCGTGGTATTT+TGG + chr4_1:46567530-46567549 Msa0550980:CDS 55.0%
ATGGCCAAAATACCACGCCC+GGG - chr4_1:46567537-46567556 None:intergenic 55.0%
CATGGCCAAAATACCACGCC+CGG - chr4_1:46567538-46567557 None:intergenic 55.0%
!! CCATGCTTGGCGGTTAGCTT+CGG - chr4_1:46567616-46567635 None:intergenic 55.0%
! CAAGAAGGGTACGCCATGCT+TGG - chr4_1:46567629-46567648 None:intergenic 55.0%
! TCATGGTGCCAAGGTCTGGA+CGG + chr4_1:46568127-46568146 Msa0550980:CDS 55.0%
TGGCGAAACGAGCACCTTGT+TGG - chr4_1:46568180-46568199 None:intergenic 55.0%
! GCAGGGGTACACTCACCATT+TGG - chr4_1:46568200-46568219 None:intergenic 55.0%
TTCCATAGGGGGATCGTGCA+GGG - chr4_1:46568217-46568236 None:intergenic 55.0%
TCCTTGACAGCCAGAGCAGA+GGG - chr4_1:46568344-46568363 None:intergenic 55.0%
TTCCTTGACAGCCAGAGCAG+AGG - chr4_1:46568345-46568364 None:intergenic 55.0%
GCTCCTGGAGTAACCATGCT+AGG - chr4_1:46568800-46568819 None:intergenic 55.0%
TACTCCAGGAGCTGAGTGCA+AGG + chr4_1:46568808-46568827 Msa0550980:CDS 55.0%
TTGTCCTTGCACTCAGCTCC+TGG - chr4_1:46568815-46568834 None:intergenic 55.0%
AGGAGCTGAGTGCAAGGACA+AGG + chr4_1:46568814-46568833 Msa0550980:CDS 55.0%
CTGGGGGAATTCTCCTGTGA+AGG - chr4_1:46568877-46568896 None:intergenic 55.0%
ATGATACCAGGGACAGCTGG+GGG - chr4_1:46568893-46568912 None:intergenic 55.0%
CATGATACCAGGGACAGCTG+GGG - chr4_1:46568894-46568913 None:intergenic 55.0%
CCATGATACCAGGGACAGCT+GGG - chr4_1:46568895-46568914 None:intergenic 55.0%
ACCATGATACCAGGGACAGC+TGG - chr4_1:46568896-46568915 None:intergenic 55.0%
CGTGCCATGGGTTTGGAGAT+TGG - chr4_1:46569078-46569097 None:intergenic 55.0%
AACGACACGTGCCATGGGTT+TGG - chr4_1:46569085-46569104 None:intergenic 55.0%
ACCGCATTGAAGACATGGGG+AGG + chr4_1:46569130-46569149 Msa0550980:CDS 55.0%
GCCTCCCCATGTCTTCAATG+CGG - chr4_1:46569134-46569153 None:intergenic 55.0%
CGCGGTCTTGACGAGCTCAT+CGG - chr4_1:46566685-46566704 None:intergenic 60.0%
CGATGAGCTCGTCAAGACCG+CGG + chr4_1:46566683-46566702 Msa0550980:CDS 60.0%
ACAATTGCTTCACCCGGGCG+TGG + chr4_1:46567522-46567541 Msa0550980:CDS 60.0%
!!! CGGGCGTGGTATTTTGGCCA+TGG + chr4_1:46567536-46567555 Msa0550980:CDS 60.0%
CCGAAGCTAACCGCCAAGCA+TGG + chr4_1:46567613-46567632 Msa0550980:CDS 60.0%
! GAAGGGTACGCCATGCTTGG+CGG - chr4_1:46567626-46567645 None:intergenic 60.0%
AGGCAAGACCGTCCAGACCT+TGG - chr4_1:46568138-46568157 None:intergenic 60.0%
TCCATAGGGGGATCGTGCAG+GGG - chr4_1:46568216-46568235 None:intergenic 60.0%
CTTCCATAGGGGGATCGTGC+AGG - chr4_1:46568218-46568237 None:intergenic 60.0%
CCAGAGCAGAGGGACCGTTT+GGG - chr4_1:46568334-46568353 None:intergenic 60.0%
TCCCTCTGCTCTGGCTGTCA+AGG + chr4_1:46568340-46568359 Msa0550980:CDS 60.0%
TGGCTGTCAAGGAAGCAGCC+TGG + chr4_1:46568351-46568370 Msa0550980:CDS 60.0%
GGCTGTCAAGGAAGCAGCCT+GGG + chr4_1:46568352-46568371 Msa0550980:CDS 60.0%
GCTGTCAAGGAAGCAGCCTG+GGG + chr4_1:46568353-46568372 Msa0550980:CDS 60.0%
CAAGGAAGCAGCCTGGGGTT+TGG + chr4_1:46568358-46568377 Msa0550980:CDS 60.0%
AGCATAGCGAGCCAAACCCC+AGG - chr4_1:46568372-46568391 None:intergenic 60.0%
GTCAGCAACTGTGGCAGGAG+AGG - chr4_1:46568840-46568859 None:intergenic 60.0%
AGAATTCCCCCAGCTGTCCC+TGG + chr4_1:46568884-46568903 Msa0550980:CDS 60.0%
CCCAGCTGTCCCTGGTATCA+TGG + chr4_1:46568892-46568911 Msa0550980:CDS 60.0%
CTGCCTTCACGTTCTCTGCG+CGG - chr4_1:46569156-46569175 None:intergenic 60.0%
CACTGGTGAGGGTGAATCCG+AGG + chr4_1:46569234-46569253 Msa0550980:CDS 60.0%
TAGGGTCTGGTGCCCCTAGC+TGG + chr4_1:46568091-46568110 Msa0550980:intron 65.0%
ACCCCTGCACGATCCCCCTA+TGG + chr4_1:46568212-46568231 Msa0550980:intron 65.0%
CCCAAACGGTCCCTCTGCTC+TGG + chr4_1:46568331-46568350 Msa0550980:CDS 65.0%
GCCAGAGCAGAGGGACCGTT+TGG - chr4_1:46568335-46568354 None:intergenic 65.0%
AGGCCGCGCAGAGAACGTGA+AGG + chr4_1:46569150-46569169 Msa0550980:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46566234 46569598 46566234 ID=Msa0550980;Name=Msa0550980
chr4_1 mRNA 46566234 46569598 46566234 ID=Msa0550980-mRNA-1;Parent=Msa0550980;Name=Msa0550980-mRNA-1;_AED=0.29;_eAED=0.29;_QI=268|1|1|1|0.71|0.5|8|280|400
chr4_1 exon 46566234 46566497 46566234 ID=Msa0550980-mRNA-1:exon:12576;Parent=Msa0550980-mRNA-1
chr4_1 exon 46566518 46566704 46566518 ID=Msa0550980-mRNA-1:exon:12577;Parent=Msa0550980-mRNA-1
chr4_1 exon 46567519 46567788 46567519 ID=Msa0550980-mRNA-1:exon:12578;Parent=Msa0550980-mRNA-1
chr4_1 exon 46568094 46568203 46568094 ID=Msa0550980-mRNA-1:exon:12579;Parent=Msa0550980-mRNA-1
chr4_1 exon 46568313 46568403 46568313 ID=Msa0550980-mRNA-1:exon:12580;Parent=Msa0550980-mRNA-1
chr4_1 exon 46568644 46568913 46568644 ID=Msa0550980-mRNA-1:exon:12581;Parent=Msa0550980-mRNA-1
chr4_1 exon 46569019 46569444 46569019 ID=Msa0550980-mRNA-1:exon:12582;Parent=Msa0550980-mRNA-1
chr4_1 exon 46569466 46569598 46569466 ID=Msa0550980-mRNA-1:exon:12583;Parent=Msa0550980-mRNA-1
chr4_1 five_prime_UTR 46566234 46566497 46566234 ID=Msa0550980-mRNA-1:five_prime_utr;Parent=Msa0550980-mRNA-1
chr4_1 five_prime_UTR 46566518 46566521 46566518 ID=Msa0550980-mRNA-1:five_prime_utr;Parent=Msa0550980-mRNA-1
chr4_1 CDS 46566522 46566704 46566522 ID=Msa0550980-mRNA-1:cds;Parent=Msa0550980-mRNA-1
chr4_1 CDS 46567519 46567788 46567519 ID=Msa0550980-mRNA-1:cds;Parent=Msa0550980-mRNA-1
chr4_1 CDS 46568094 46568203 46568094 ID=Msa0550980-mRNA-1:cds;Parent=Msa0550980-mRNA-1
chr4_1 CDS 46568313 46568403 46568313 ID=Msa0550980-mRNA-1:cds;Parent=Msa0550980-mRNA-1
chr4_1 CDS 46568644 46568913 46568644 ID=Msa0550980-mRNA-1:cds;Parent=Msa0550980-mRNA-1
chr4_1 CDS 46569019 46569297 46569019 ID=Msa0550980-mRNA-1:cds;Parent=Msa0550980-mRNA-1
chr4_1 three_prime_UTR 46569298 46569444 46569298 ID=Msa0550980-mRNA-1:three_prime_utr;Parent=Msa0550980-mRNA-1
chr4_1 three_prime_UTR 46569466 46569598 46569466 ID=Msa0550980-mRNA-1:three_prime_utr;Parent=Msa0550980-mRNA-1
Gene Sequence

>Msa0550980

ATGGCTTCTGCTTCAGCATCTTGTTTCAAGTCATCACTTGTTCTTGACAAGTCTGAATGGGTGAAGGGACAAACCCTCCTACGTCAACCTTCTTCTATGTCTGTTGTAAGATGCAACCCTACTGCTCCATCAGGTCTTACCATTAGAGCTGGTTCATACGCCGATGAGCTCGTCAAGACCGCGAAAACAATTGCTTCACCCGGGCGTGGTATTTTGGCCATGGATGAGTCCAATGCTACATGTGGGAAGCGTTTGGCTTCAATTGGGCTAGAGAACACCGAAGCTAACCGCCAAGCATGGCGTACCCTTCTTGTGACAGTTCCATCACTTGGAGAGTATATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCTACAGTTGATGGAAGGAAGATTGTTGACGTGCTTATCGAGCAAAACATTGTTCCTGGTATCAAAGTTGACAAGGGTCTGGTGCCCCTAGCTGGTTCCAACGATGAATCATGGTGCCAAGGTCTGGACGGTCTTGCCTCTCGTTCAGCTGCATACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACAGTTGTGAGCATCCCAAACGGTCCCTCTGCTCTGGCTGTCAAGGAAGCAGCCTGGGGTTTGGCTCGCTATGCTGCAATTAGTCAGGACAACGGATTGGTCCCAATTGTGGAACCAGAGATCTTGCTTGATGGAGAACATGGTATTGACAGAACTTTTGAAGTAGCACAAAAGGTTTGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCAATTTGAGGGCATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCTGAGTGCAAGGACAAGGCCTCTCCTGCCACAGTTGCTGACTATACCCTCAAGCTCCTTCACAGGAGAATTCCCCCAGCTGTCCCTGGTATCATGTTTTTGTCTGGGGGACAATCTGAGGTTGAAGCAACCCTCAACTTGAATGCCATGAACCAATCTCCAAACCCATGGCACGTGTCGTTCTCATACGCAAGAGCTCTCCAAAATACCGCATTGAAGACATGGGGAGGCCGCGCAGAGAACGTGAAGGCAGCTCAAGAAGCGCTTCTTTTCCGCGCCAAGTCCAACTCAATTGCTCAACTTGGAAAGTACACTGGTGAGGGTGAATCCGAGGAAGCCAAGAAGGAATTGTTCGTCAAAGGCTACTCTTACTAA

Protein sequence

>Msa0550980

MASASASCFKSSLVLDKSEWVKGQTLLRQPSSMSVVRCNPTAPSGLTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAWRTLLVTVPSLGEYISGAILFEETLYQSTVDGRKIVDVLIEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVQFEGILLKPSMVTPGAECKDKASPATVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRAENVKAAQEALLFRAKSNSIAQLGKYTGEGESEEAKKELFVKGYSY*