AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136360 MtrunA17_Chr1g0207651 97.625 379 5 1 1 375 1 379 0.0 746
Msa0136360 MtrunA17_Chr6g0451961 35.372 376 201 10 1 360 6 355 2.11e-56 188
Msa0136360 MtrunA17_Chr3g0143831 27.761 335 167 13 45 371 65 332 8.46e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136360 AT2G14910.1 65.732 321 102 2 51 368 71 386 1.11e-140 405
Msa0136360 AT2G14910.2 64.460 287 97 1 51 337 71 352 4.21e-122 357
Msa0136360 AT5G14970.1 37.950 361 189 8 10 360 19 354 8.73e-59 194
Msa0136360 AT1G63610.1 26.645 304 162 8 56 359 84 326 2.53e-22 97.1
Msa0136360 AT1G63610.2 29.064 203 111 6 56 256 84 255 3.47e-16 78.2
Msa0136360 AT1G63610.3 37.500 88 55 0 56 143 84 171 4.59e-14 70.5

Find 133 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGCCCGCCTGCTCTTT+TGG 0.245314 1_3:-68182987 Msa0136360:intron
TTTGTAGAAATCTGCTTTAT+CGG 0.259410 1_3:-68186007 Msa0136360:intron
CTTCTTCCTCCCTTCTCTTT+CGG 0.270343 1_3:+68186416 None:intergenic
GCTATGAAAAGGACCATTTC+TGG 0.273572 1_3:-68185913 Msa0136360:CDS
GCGGTTGGCATTGCTGTTGC+TGG 0.276572 1_3:-68182412 Msa0136360:three_prime_UTR
AGAAGAAAAGAATGATTTAC+TGG 0.277554 1_3:-68184064 Msa0136360:CDS
TCCCGAGTTAATGATATAAA+AGG 0.301606 1_3:+68183012 None:intergenic
GAGGGCTTTGAATGCATCTT+AGG 0.310216 1_3:+68183126 None:intergenic
AAGACAAAATACTGCTTTCA+TGG 0.313412 1_3:-68182486 Msa0136360:three_prime_UTR
CTTCAAATGCAGCAATTTGT+TGG 0.343190 1_3:-68184087 Msa0136360:CDS
TGGAGCCTTTGGACCAATCT+TGG 0.344284 1_3:-68186539 Msa0136360:five_prime_UTR
ATTTACATCCCCTGAGCTTA+AGG 0.344914 1_3:-68183193 Msa0136360:CDS
TGCTGAGTATAGGCTTTGTT+TGG 0.347450 1_3:-68185024 Msa0136360:CDS
AGGACCATTTCTGGTATGTT+GGG 0.354983 1_3:-68185904 Msa0136360:CDS
AACCTGACTAGTTGGAAGTT+TGG 0.362682 1_3:-68186607 Msa0136360:five_prime_UTR
CACATCCATCGTGGAGCCTT+TGG 0.372632 1_3:-68186550 Msa0136360:five_prime_UTR
AACTTAGTACTTTCTGCCTT+CGG 0.377112 1_3:+68184963 None:intergenic
CTCATTTCTTCAATGATGAC+TGG 0.387115 1_3:-68185817 Msa0136360:CDS
CCCTCGAAGGTGCATGCTGT+TGG 0.406060 1_3:-68182748 Msa0136360:intron
GAGATCGCTTCAACCTGAAC+AGG 0.407417 1_3:-68184034 Msa0136360:intron
ACAAAAGGCAAAACCTGTTC+AGG 0.409693 1_3:+68184021 None:intergenic
GAGAGGAAGAGAGGAGGAGG+AGG 0.414500 1_3:+68186302 None:intergenic
CTGTTGGGACACTATCTTAG+AGG 0.422319 1_3:-68182732 Msa0136360:CDS
AAGCTCAGGGGATGTAAATT+CGG 0.424523 1_3:+68183197 None:intergenic
TGAATATTACTCACATCTAA+AGG 0.427179 1_3:+68185964 None:intergenic
GGAGGAGAGGATGGAGGGAA+GGG 0.427494 1_3:+68186320 None:intergenic
AGGAGGAGAGGATGGAGGGA+AGG 0.429740 1_3:+68186319 None:intergenic
GAGGAGGAGGAGAGGATGGA+GGG 0.434326 1_3:+68186315 None:intergenic
CCTCGAAGGTGCATGCTGTT+GGG 0.434431 1_3:-68182747 Msa0136360:intron
CAACCCCAACATACCAGAAA+TGG 0.436781 1_3:+68185900 None:intergenic
GAAGAGAAAGAGAAAGGTGT+TGG 0.440010 1_3:-68186383 Msa0136360:five_prime_UTR
TTTATCAGTTCTTCATTGCT+AGG 0.440528 1_3:+68182237 None:intergenic
GGAGGAGGAGGAGAGGATGG+AGG 0.442021 1_3:+68186314 None:intergenic
CCTTGAGTATCGAATGGAAT+TGG 0.442917 1_3:-68182709 Msa0136360:CDS
CATTGAAGAAATGAGTAACT+TGG 0.446046 1_3:+68185825 None:intergenic
TTCATAGCATCAGCTGTAGT+TGG 0.452605 1_3:+68185928 None:intergenic
TTCCAAACTTCCAACTAGTC+AGG 0.455928 1_3:+68186605 None:intergenic
TTGAATGCATCTTAGGAGAA+AGG 0.461924 1_3:+68183133 None:intergenic
ATGTCGTTGTTGAGGCTTTG+TGG 0.462573 1_3:-68185858 Msa0136360:CDS
AGAAATATATTCTTGAGCTT+CGG 0.466226 1_3:+68184815 None:intergenic
AACTTCCAACTAGTCAGGTT+AGG 0.467223 1_3:+68186610 None:intergenic
ATGGAGAGGAAGAGAGGAGG+AGG 0.467307 1_3:+68186299 None:intergenic
AAGGACCATTTCTGGTATGT+TGG 0.467555 1_3:-68185905 Msa0136360:CDS
TGTCGTTGTTGAGGCTTTGT+GGG 0.467846 1_3:-68185857 Msa0136360:CDS
CGGCAGAAGCGACTAAAACT+TGG 0.470305 1_3:+68182530 None:intergenic
ACTCTTCAATCAGTGTATAG+AGG 0.473717 1_3:-68182604 Msa0136360:three_prime_UTR
AAGAGAAAGAGAAAGGTGTT+GGG 0.476294 1_3:-68186382 Msa0136360:five_prime_UTR
GAGAAAGAGAAGGAAGGAGA+GGG 0.482114 1_3:+68186267 None:intergenic
CATAATCTCTTCGTGTTGAA+AGG 0.482634 1_3:+68182560 None:intergenic
GTGGATATGTCTTCCAAGAT+TGG 0.485651 1_3:+68186526 None:intergenic
GCAGAAGCGAGAACAAGAAA+GGG 0.487309 1_3:+68186210 None:intergenic
TTGGAATCTGTTAGCCGACT+AGG 0.487584 1_3:-68186588 Msa0136360:five_prime_UTR
TGCAGAAGCGAGAACAAGAA+AGG 0.488121 1_3:+68186209 None:intergenic
AGGATGATGTCCTTAAGCTC+AGG 0.490001 1_3:+68183183 None:intergenic
AACACCCACAATTATTATTG+TGG 0.492591 1_3:-68186461 Msa0136360:five_prime_UTR
CATTGCGCAATGCTGAGTAT+AGG 0.493261 1_3:-68185034 Msa0136360:CDS
ACAGTTGGATCAGCAAATGC+TGG 0.494546 1_3:-68183084 Msa0136360:CDS
AGAGAAAGAGAAGGAAGGAG+AGG 0.495517 1_3:+68186266 None:intergenic
GGTAAAGTCGTTGGAGGAGT+GGG 0.495967 1_3:+68186185 None:intergenic
AGAAGAGAAGAGAAAGAGAA+AGG 0.500342 1_3:-68186389 Msa0136360:five_prime_UTR
TCAAACCTAACCTGACTAGT+TGG 0.507423 1_3:-68186615 Msa0136360:five_prime_UTR
AGAGGAGAGAAAGAGAAGGA+AGG 0.507778 1_3:+68186261 None:intergenic
GGAGACCGTGGACAACAGAT+AGG 0.510446 1_3:+68183163 None:intergenic
TGCAGCCACAATAATAATTG+TGG 0.511078 1_3:+68186456 None:intergenic
TGAATGCATCTTAGGAGAAA+GGG 0.514493 1_3:+68183134 None:intergenic
GACAGTGAAACCGAAAGAGA+AGG 0.515735 1_3:-68186426 Msa0136360:five_prime_UTR
AGTGTAAATGTTATTGACTT+TGG 0.517614 1_3:-68184915 Msa0136360:CDS
TACCTTGGAGGTAAAGTCGT+TGG 0.519637 1_3:+68186176 None:intergenic
TGCATTCTCTGATGTAGTAG+AGG 0.521881 1_3:+68183107 None:intergenic
TTGACAAATGTTGCTGAGAA+TGG 0.525788 1_3:-68182672 Msa0136360:CDS
AAGGAGAGGGACGGAAGCGA+TGG 0.527345 1_3:+68186280 None:intergenic
AAGAGAAGGAAGGAGAGGGA+CGG 0.527623 1_3:+68186271 None:intergenic
AAGAGAAAGATAAATGTGTC+TGG 0.529818 1_3:+68182111 None:intergenic
GCATTCTCTGATGTAGTAGA+GGG 0.533188 1_3:+68183108 None:intergenic
GTCTTCCAAGATTGGTCCAA+AGG 0.536368 1_3:+68186534 None:intergenic
TCAATTTAATGTCGTTGTTG+AGG 0.537014 1_3:-68185866 Msa0136360:CDS
CTACAGCTGATGCTATGAAA+AGG 0.537612 1_3:-68185924 Msa0136360:CDS
TCATTTCTTCAATGATGACT+GGG 0.538264 1_3:-68185816 Msa0136360:intron
ATCAGCAAATGCTGGGAATG+AGG 0.548689 1_3:-68183076 Msa0136360:CDS
CAAAGGCTCCACGATGGATG+TGG 0.549213 1_3:+68186551 None:intergenic
AGGTAAAGTCGTTGGAGGAG+TGG 0.549356 1_3:+68186184 None:intergenic
ACGACATTAAATTGATCAGA+TGG 0.549624 1_3:+68185874 None:intergenic
TCAACTTCATCTTGCATCTG+AGG 0.550765 1_3:+68182336 None:intergenic
CTTGGAGGTAAAGTCGTTGG+AGG 0.551575 1_3:+68186179 None:intergenic
ATATGGTTTAGTTACCTTGG+AGG 0.551882 1_3:+68186164 None:intergenic
GACTCTCAACTCTACATACA+TGG 0.552730 1_3:-68186346 Msa0136360:exon
CAGAAGCGAGAACAAGAAAG+GGG 0.552961 1_3:+68186211 None:intergenic
TCACAAAAGTTGAAAGCGGT+TGG 0.555582 1_3:-68182427 Msa0136360:three_prime_UTR
GAAATGAGTAACTTGGAAAG+AGG 0.557837 1_3:+68185832 None:intergenic
CGGTTGGCATTGCTGTTGCT+GGG 0.563200 1_3:-68182411 Msa0136360:three_prime_UTR
TTTGTAGGATTTGAGCGAAG+AGG 0.563546 1_3:+68186243 None:intergenic
ACAGTGAAACCGAAAGAGAA+GGG 0.565824 1_3:-68186425 Msa0136360:five_prime_UTR
ATAGCATCAGCTGTAGTTGG+CGG 0.566459 1_3:+68185931 None:intergenic
GGATGATGTCCTTAAGCTCA+GGG 0.566566 1_3:+68183184 None:intergenic
GAAGCGATGGAGAGGAAGAG+AGG 0.566583 1_3:+68186293 None:intergenic
GCGATGGAGAGGAAGAGAGG+AGG 0.566927 1_3:+68186296 None:intergenic
TCAATCAGTGTATAGAGGCA+TGG 0.571490 1_3:-68182599 Msa0136360:three_prime_UTR
GGACCATTTCTGGTATGTTG+GGG 0.572912 1_3:-68185903 Msa0136360:CDS
GAGGGACGGAAGCGATGGAG+AGG 0.573663 1_3:+68186285 None:intergenic
GCAGCCACAATAATAATTGT+GGG 0.577564 1_3:+68186457 None:intergenic
TGAGTATCGAATGGAATTGG+CGG 0.578665 1_3:-68182706 Msa0136360:CDS
GACGTTGACATTCAAGACCT+TGG 0.582269 1_3:-68184849 Msa0136360:CDS
ACATCAGAGAATGCAACAGT+TGG 0.582607 1_3:-68183099 Msa0136360:CDS
GAAATACTGACCAAAAGAGC+AGG 0.586296 1_3:+68182977 None:intergenic
CAGTTGGATCAGCAAATGCT+GGG 0.591873 1_3:-68183083 Msa0136360:CDS
CCAATTCCATTCGATACTCA+AGG 0.592985 1_3:+68182709 None:intergenic
AGGAGCTACGTGAAGTGAAG+AGG 0.593841 1_3:-68184122 Msa0136360:CDS
ATTCTCAGCAACATTTGTCA+AGG 0.595786 1_3:+68182674 None:intergenic
CTCCAACGACTTTACCTCCA+AGG 0.598406 1_3:-68186178 Msa0136360:intron
TAGAGGCCTTGAGTATCGAA+TGG 0.598996 1_3:-68182715 Msa0136360:CDS
GCGAAGAGGAGAGAAAGAGA+AGG 0.603411 1_3:+68186257 None:intergenic
TGAATGTCAACGTCCTCGTG+AGG 0.617337 1_3:+68184858 None:intergenic
TGGAAGCAATGATATCTCCT+CGG 0.620246 1_3:+68182510 None:intergenic
TACTGACCAAAAGAGCAGGC+GGG 0.622149 1_3:+68182981 None:intergenic
ACCATCACAAAAGTTGAAAG+CGG 0.629764 1_3:-68182431 Msa0136360:three_prime_UTR
ATCATCCTATCTGTTGTCCA+CGG 0.630634 1_3:-68183168 Msa0136360:CDS
TATCTCTATGACAGCCTAGT+CGG 0.632547 1_3:+68186574 None:intergenic
AAAGGGTGGCAAGGAGACCG+TGG 0.634725 1_3:+68183151 None:intergenic
TCTTAGGAGAAAGGGTGGCA+AGG 0.640314 1_3:+68183142 None:intergenic
CAGAGATCTTGAGAAGCCGA+AGG 0.645044 1_3:-68184979 Msa0136360:CDS
ATACTGACCAAAAGAGCAGG+CGG 0.646205 1_3:+68182980 None:intergenic
CAAAGTTGAAAAGCCTCACG+AGG 0.665589 1_3:-68184871 Msa0136360:CDS
TAGAGATACCACATCCATCG+TGG 0.669861 1_3:-68186559 Msa0136360:five_prime_UTR
ATGCATCTTAGGAGAAAGGG+TGG 0.676044 1_3:+68183137 None:intergenic
GTGAAACCGAAAGAGAAGGG+AGG 0.679099 1_3:-68186422 Msa0136360:five_prime_UTR
TTGGTCCAAAGGCTCCACGA+TGG 0.690352 1_3:+68186545 None:intergenic
CTTCGGCAGATATTTGACCA+AGG 0.705206 1_3:+68184832 None:intergenic
TAACATTTACACTGTCACGT+AGG 0.718366 1_3:+68184925 None:intergenic
TGGGAATGAGGATTGTGCTG+AGG 0.725822 1_3:-68183064 Msa0136360:CDS
AGAAGCGAGAACAAGAAAGG+GGG 0.727238 1_3:+68186212 None:intergenic
GATGATGTCCTTAAGCTCAG+GGG 0.768594 1_3:+68183185 None:intergenic
GCGCTAGCAAGATAAACACA+CGG 0.804257 1_3:+68186504 None:intergenic
CTAGCAAGATAAACACACGG+TGG 0.808307 1_3:+68186507 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAAAGATAAATAA+AGG + chr1_3:68182110-68182129 None:intergenic 10.0%
!!! ATTATAAAGTGTTTTTAATT+TGG - chr1_3:68183143-68183162 Msa0136360:CDS 10.0%
!! AATTGTTAAAATTTCATTAT+GGG + chr1_3:68183245-68183264 None:intergenic 10.0%
!! AAATTGTTAAAATTTCATTA+TGG + chr1_3:68183246-68183265 None:intergenic 10.0%
!! TTCAAAAGAATTAAAAATTT+GGG + chr1_3:68183611-68183630 None:intergenic 10.0%
!!! GATTTTATAAATAATGATTT+TGG - chr1_3:68184956-68184975 Msa0136360:CDS 10.0%
!! AATACATAGTAATATAAAAT+AGG + chr1_3:68185467-68185486 None:intergenic 10.0%
!! TCAAAAGAATTAAAAATTTG+GGG + chr1_3:68183610-68183629 None:intergenic 15.0%
!! CTTCAAAAGAATTAAAAATT+TGG + chr1_3:68183612-68183631 None:intergenic 15.0%
!!! ATTTTAAGAATTTTATGCAT+TGG - chr1_3:68184023-68184042 Msa0136360:intron 15.0%
!! ATTATATAGCATATAAAGAA+AGG + chr1_3:68184788-68184807 None:intergenic 15.0%
!!! TTATATTTTGTATTTGTGTA+AGG - chr1_3:68184901-68184920 Msa0136360:CDS 15.0%
!! GCTTTAATAAATCATATAAA+GGG + chr1_3:68185051-68185070 None:intergenic 15.0%
!!! AGCTTTAATAAATCATATAA+AGG + chr1_3:68185052-68185071 None:intergenic 15.0%
!! TTAGTGTTTAAATGAATATT+TGG + chr1_3:68185387-68185406 None:intergenic 15.0%
!!! GAACATTTAAGATTTAATAA+TGG - chr1_3:68185849-68185868 Msa0136360:CDS 15.0%
!! ATACAAAATCTTCCTAATAT+GGG + chr1_3:68183383-68183402 None:intergenic 20.0%
!! AATACAAAATCTTCCTAATA+TGG + chr1_3:68183384-68183403 None:intergenic 20.0%
!! GATTGTCCATTTATTTATTT+AGG + chr1_3:68183502-68183521 None:intergenic 20.0%
!! AAATAAATGGACAATCTATT+CGG - chr1_3:68183506-68183525 Msa0136360:intron 20.0%
!!! TCTATAGTATACCTTTTTTA+TGG + chr1_3:68183983-68184002 None:intergenic 20.0%
!! ATAAAATTCTTAAAATGCCA+AGG + chr1_3:68184019-68184038 None:intergenic 20.0%
!! AATAAATAGAGTAGATCATA+TGG - chr1_3:68184232-68184251 Msa0136360:intron 20.0%
!!! GTTTCTCTTATAGTTTTTTT+AGG + chr1_3:68184290-68184309 None:intergenic 20.0%
!! AAACTATAAGAGAAACTATT+AGG - chr1_3:68184294-68184313 Msa0136360:intron 20.0%
!! AGATTTATAGATTAATGAGT+TGG - chr1_3:68184319-68184338 Msa0136360:intron 20.0%
!! TTGTGATAAAAAAAACAGTA+TGG - chr1_3:68184355-68184374 Msa0136360:intron 20.0%
!! ACACAAATACAAAATATAAC+AGG + chr1_3:68184900-68184919 None:intergenic 20.0%
!! TATATGATTTATTAAAGCTG+AGG - chr1_3:68185053-68185072 Msa0136360:intron 20.0%
!! ATATGATTTATTAAAGCTGA+GGG - chr1_3:68185054-68185073 Msa0136360:intron 20.0%
!! TTAAAAACTAGATACAACTA+AGG + chr1_3:68186460-68186479 None:intergenic 20.0%
!!! AGTATGTACAGATTTTATTT+CGG + chr1_3:68186546-68186565 None:intergenic 20.0%
!!! GTAATGACTATTTTTTAGTT+AGG - chr1_3:68186591-68186610 Msa0136360:five_prime_UTR 20.0%
! ATTCAACAGTAGTAGTAATA+TGG + chr1_3:68182606-68182625 None:intergenic 25.0%
!!! TAAGAAGGAATTGACTTTTT+AGG - chr1_3:68182656-68182675 Msa0136360:CDS 25.0%
!!! TGACTTTTTAGGTTCATTAA+CGG - chr1_3:68182667-68182686 Msa0136360:CDS 25.0%
! TTTGTAGAAATCTGCTTTAT+CGG - chr1_3:68182743-68182762 Msa0136360:intron 25.0%
! TGAATATTACTCACATCTAA+AGG + chr1_3:68182789-68182808 None:intergenic 25.0%
!! AAATTTTCATGTTCTTGCTA+TGG - chr1_3:68183000-68183019 Msa0136360:CDS 25.0%
! TACAAAATCTTCCTAATATG+GGG + chr1_3:68183382-68183401 None:intergenic 25.0%
! ACACAGCCTAAATAAATAAA+TGG - chr1_3:68183493-68183512 Msa0136360:intron 25.0%
! CAAGTAATGTTTATCCAAAT+GGG - chr1_3:68183656-68183675 Msa0136360:intron 25.0%
! AAGTAATGTTTATCCAAATG+GGG - chr1_3:68183657-68183676 Msa0136360:intron 25.0%
!!! AGTGTAAATGTTATTGACTT+TGG - chr1_3:68183835-68183854 Msa0136360:intron 25.0%
! AGAAATATATTCTTGAGCTT+CGG + chr1_3:68183938-68183957 None:intergenic 25.0%
! TTTAGACCAATAACTAACAA+TGG + chr1_3:68184093-68184112 None:intergenic 25.0%
!!! ATTGGTCTAAAGTTTTATGT+TGG - chr1_3:68184102-68184121 Msa0136360:CDS 25.0%
!! TTTTTATCACAAGCCATATT+TGG + chr1_3:68184347-68184366 None:intergenic 25.0%
! AGAAGAAAAGAATGATTTAC+TGG - chr1_3:68184686-68184705 Msa0136360:intron 25.0%
!! CAAACAAGAATTTTCACAAA+AGG + chr1_3:68184747-68184766 None:intergenic 25.0%
! ATATAGCATATAAAGAAAGG+TGG + chr1_3:68184785-68184804 None:intergenic 25.0%
! TATCTATGCTTATTAACCAT+TGG - chr1_3:68184981-68185000 Msa0136360:CDS 25.0%
! TATGATTTATTAAAGCTGAG+GGG - chr1_3:68185055-68185074 Msa0136360:intron 25.0%
! TATTTGGATTTGTCACATAT+TGG + chr1_3:68185371-68185390 None:intergenic 25.0%
!!! GTTTATATCAGTGTTTTAGT+CGG - chr1_3:68185494-68185513 Msa0136360:intron 25.0%
!!! TTTATATCAGTGTTTTAGTC+GGG - chr1_3:68185495-68185514 Msa0136360:intron 25.0%
!! AGCCTTTTATATCATTAACT+CGG - chr1_3:68185736-68185755 Msa0136360:intron 25.0%
!! TTTAAGGTTATGTACTAATG+TGG - chr1_3:68185928-68185947 Msa0136360:CDS 25.0%
AACACCCACAATTATTATTG+TGG - chr1_3:68182289-68182308 Msa0136360:three_prime_UTR 30.0%
GTAATATGGTTTAGTTACCT+TGG + chr1_3:68182592-68182611 None:intergenic 30.0%
TCCATCATGTGATTATAAGA+AGG - chr1_3:68182641-68182660 Msa0136360:exon 30.0%
TCCTTCTTATAATCACATGA+TGG + chr1_3:68182645-68182664 None:intergenic 30.0%
!!! GACTTTTTAGGTTCATTAAC+GGG - chr1_3:68182668-68182687 Msa0136360:CDS 30.0%
ACGACATTAAATTGATCAGA+TGG + chr1_3:68182879-68182898 None:intergenic 30.0%
TCAATTTAATGTCGTTGTTG+AGG - chr1_3:68182884-68182903 Msa0136360:intron 30.0%
CATTGAAGAAATGAGTAACT+TGG + chr1_3:68182928-68182947 None:intergenic 30.0%
TCATTTCTTCAATGATGACT+GGG - chr1_3:68182934-68182953 Msa0136360:intron 30.0%
TACAGAATGTTGTCAAATTG+CGG - chr1_3:68183200-68183219 Msa0136360:CDS 30.0%
!!! ATTTTTGAGTTCCCCATATT+AGG - chr1_3:68183368-68183387 Msa0136360:intron 30.0%
! ATAAACCCTACCTTTAAGTT+AGG - chr1_3:68183419-68183438 Msa0136360:intron 30.0%
! TAAACCCTACCTTTAAGTTA+GGG - chr1_3:68183420-68183439 Msa0136360:intron 30.0%
ATAATAGTCCCCTAACTTAA+AGG + chr1_3:68183432-68183451 None:intergenic 30.0%
CCATTTGGATAAACATTACT+TGG + chr1_3:68183658-68183677 None:intergenic 30.0%
CCAAGTAATGTTTATCCAAA+TGG - chr1_3:68183655-68183674 Msa0136360:intron 30.0%
AGTAATGTTTATCCAAATGG+GGG - chr1_3:68183658-68183677 Msa0136360:intron 30.0%
TCGTTTGTCTTCCATAAAAA+AGG - chr1_3:68183969-68183988 Msa0136360:intron 30.0%
AATTCTTAAAATGCCAAGGA+AGG + chr1_3:68184015-68184034 None:intergenic 30.0%
CATTAGCCATTGTTAGTTAT+TGG - chr1_3:68184084-68184103 Msa0136360:CDS 30.0%
AACACCTAAAGTAGAAAAGA+TGG - chr1_3:68184154-68184173 Msa0136360:intron 30.0%
AAATAGAGTAGATCATATGG+AGG - chr1_3:68184235-68184254 Msa0136360:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG - chr1_3:68184331-68184350 Msa0136360:intron 30.0%
TTTGATTGTCACATTTCTCA+TGG - chr1_3:68184451-68184470 Msa0136360:intron 30.0%
AGAAAACGAGTTCAATGTAA+CGG + chr1_3:68184569-68184588 None:intergenic 30.0%
! TGTTTCTTTTCCTTCCTTTT+TGG - chr1_3:68184595-68184614 Msa0136360:intron 30.0%
TAAAGAAAGGTGGTTGTAAA+TGG + chr1_3:68184775-68184794 None:intergenic 30.0%
!! AATTGCCATGCATTTTAACA+TGG - chr1_3:68184805-68184824 Msa0136360:CDS 30.0%
AACTACAAGATAACAAACCA+AGG + chr1_3:68184846-68184865 None:intergenic 30.0%
! TTGTATCCTTTTCCATCATT+AGG - chr1_3:68185336-68185355 Msa0136360:intron 30.0%
! TTTCATCCTAATGATGGAAA+AGG + chr1_3:68185345-68185364 None:intergenic 30.0%
! TGGAATTTTCATCCTAATGA+TGG + chr1_3:68185351-68185370 None:intergenic 30.0%
! GCCTTTTATATCATTAACTC+GGG - chr1_3:68185737-68185756 Msa0136360:intron 30.0%
TCCCGAGTTAATGATATAAA+AGG + chr1_3:68185741-68185760 None:intergenic 30.0%
ATGATACTTGAAAGATGATC+TGG - chr1_3:68185900-68185919 Msa0136360:CDS 30.0%
!! AGATGATCTGGAATGTTTTA+AGG - chr1_3:68185912-68185931 Msa0136360:CDS 30.0%
AAGACAAAATACTGCTTTCA+TGG - chr1_3:68186264-68186283 Msa0136360:CDS 30.0%
TTTATCAGTTCTTCATTGCT+AGG + chr1_3:68186516-68186535 None:intergenic 30.0%
AAGAGAAAGATAAATGTGTC+TGG + chr1_3:68186642-68186661 None:intergenic 30.0%
GCAGCCACAATAATAATTGT+GGG + chr1_3:68182296-68182315 None:intergenic 35.0%
TGCAGCCACAATAATAATTG+TGG + chr1_3:68182297-68182316 None:intergenic 35.0%
AGAAGAGAAGAGAAAGAGAA+AGG - chr1_3:68182361-68182380 Msa0136360:three_prime_UTR 35.0%
!! AAGAGAAAGAGAAAGGTGTT+GGG - chr1_3:68182368-68182387 Msa0136360:three_prime_UTR 35.0%
ATATGGTTTAGTTACCTTGG+AGG + chr1_3:68182589-68182608 None:intergenic 35.0%
GAAATGAGTAACTTGGAAAG+AGG + chr1_3:68182921-68182940 None:intergenic 35.0%
CTCATTTCTTCAATGATGAC+TGG - chr1_3:68182933-68182952 Msa0136360:intron 35.0%
! GTGATAGACATTGAAGTACT+AGG + chr1_3:68182966-68182985 None:intergenic 35.0%
AGCTAATCGGATTGTTATCA+TGG - chr1_3:68183023-68183042 Msa0136360:CDS 35.0%
! CGTTCTCTAGAAAACTAATG+TGG + chr1_3:68183080-68183099 None:intergenic 35.0%
GAACGAGAAGAAAATGCTTA+TGG - chr1_3:68183095-68183114 Msa0136360:CDS 35.0%
CTCAAAAATGTATTGGAGGA+GGG + chr1_3:68183357-68183376 None:intergenic 35.0%
ACTCAAAAATGTATTGGAGG+AGG + chr1_3:68183358-68183377 None:intergenic 35.0%
GGAACTCAAAAATGTATTGG+AGG + chr1_3:68183361-68183380 None:intergenic 35.0%
TGGGGAACTCAAAAATGTAT+TGG + chr1_3:68183364-68183383 None:intergenic 35.0%
! AAACCCTACCTTTAAGTTAG+GGG - chr1_3:68183421-68183440 Msa0136360:intron 35.0%
!!! TGTGTTTTTGAGTTTAGGAG+GGG + chr1_3:68183478-68183497 None:intergenic 35.0%
!!! CTGTGTTTTTGAGTTTAGGA+GGG + chr1_3:68183479-68183498 None:intergenic 35.0%
!!! TAGGCTGTGTTTTTGAGTTT+AGG + chr1_3:68183483-68183502 None:intergenic 35.0%
AAGCTTTCTTCATGTACTAC+AGG - chr1_3:68183689-68183708 Msa0136360:intron 35.0%
AACTTAGTACTTTCTGCCTT+CGG + chr1_3:68183790-68183809 None:intergenic 35.0%
TAACATTTACACTGTCACGT+AGG + chr1_3:68183828-68183847 None:intergenic 35.0%
TAGAATTGAAGATCCTTCCT+TGG - chr1_3:68183999-68184018 Msa0136360:intron 35.0%
ACCTAAAGTAGAAAAGATGG+TGG - chr1_3:68184157-68184176 Msa0136360:intron 35.0%
CCTAAAGTAGAAAAGATGGT+GGG - chr1_3:68184158-68184177 Msa0136360:intron 35.0%
!! TAGAAAAGATGGTGGGAAAT+AGG - chr1_3:68184165-68184184 Msa0136360:intron 35.0%
GAGGATAATCAGATTACAAG+AGG - chr1_3:68184254-68184273 Msa0136360:intron 35.0%
AATCAGATTACAAGAGGTAG+AGG - chr1_3:68184260-68184279 Msa0136360:intron 35.0%
! ATGGTCTCTAATTTGTCTGT+TGG - chr1_3:68184499-68184518 Msa0136360:intron 35.0%
CAGTTATCTCAATTGCAGTT+AGG - chr1_3:68184540-68184559 Msa0136360:intron 35.0%
!! TTAGAAGTGTCCAAAAAGGA+AGG + chr1_3:68184608-68184627 None:intergenic 35.0%
! TCCTTTTTGGACACTTCTAA+AGG - chr1_3:68184608-68184627 Msa0136360:intron 35.0%
!! TCCTTTAGAAGTGTCCAAAA+AGG + chr1_3:68184612-68184631 None:intergenic 35.0%
CTTCAAATGCAGCAATTTGT+TGG - chr1_3:68184663-68184682 Msa0136360:intron 35.0%
TTGCACCATGTTAAAATGCA+TGG + chr1_3:68184813-68184832 None:intergenic 35.0%
TAACATGGTGCAATTCTATC+TGG - chr1_3:68184820-68184839 Msa0136360:CDS 35.0%
TTGTATTTGTGTAAGGTGTG+TGG - chr1_3:68184908-68184927 Msa0136360:CDS 35.0%
ACGAGGAAAAAAACTACCAA+TGG + chr1_3:68185000-68185019 None:intergenic 35.0%
GAAACGTGAAATATATCACG+AGG + chr1_3:68185017-68185036 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr1_3:68185151-68185170 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr1_3:68185150-68185169 Msa0136360:intron 35.0%
AAATCATATAAAGGGCAACC+TGG + chr1_3:68185242-68185261 None:intergenic 35.0%
TGAATGCATCTTAGGAGAAA+GGG + chr1_3:68185619-68185638 None:intergenic 35.0%
TTGAATGCATCTTAGGAGAA+AGG + chr1_3:68185620-68185639 None:intergenic 35.0%
ATTCTCAGCAACATTTGTCA+AGG + chr1_3:68186079-68186098 None:intergenic 35.0%
TTGACAAATGTTGCTGAGAA+TGG - chr1_3:68186078-68186097 Msa0136360:intron 35.0%
ACTCTTCAATCAGTGTATAG+AGG - chr1_3:68186146-68186165 Msa0136360:intron 35.0%
CATAATCTCTTCGTGTTGAA+AGG + chr1_3:68186193-68186212 None:intergenic 35.0%
! GAAAGCAGTATTTTGTCTTC+TGG + chr1_3:68186263-68186282 None:intergenic 35.0%
ACCATCACAAAAGTTGAAAG+CGG - chr1_3:68186319-68186338 Msa0136360:CDS 35.0%
TCAAACCTAACCTGACTAGT+TGG - chr1_3:68182135-68182154 Msa0136360:three_prime_UTR 40.0%
AACTTCCAACTAGTCAGGTT+AGG + chr1_3:68182143-68182162 None:intergenic 40.0%
! AACCTGACTAGTTGGAAGTT+TGG - chr1_3:68182143-68182162 Msa0136360:three_prime_UTR 40.0%
TTCCAAACTTCCAACTAGTC+AGG + chr1_3:68182148-68182167 None:intergenic 40.0%
TATCTCTATGACAGCCTAGT+CGG + chr1_3:68182179-68182198 None:intergenic 40.0%
GTGGATATGTCTTCCAAGAT+TGG + chr1_3:68182227-68182246 None:intergenic 40.0%
ACAGTGAAACCGAAAGAGAA+GGG - chr1_3:68182325-68182344 Msa0136360:three_prime_UTR 40.0%
! GAAGAGAAAGAGAAAGGTGT+TGG - chr1_3:68182367-68182386 Msa0136360:three_prime_UTR 40.0%
GACTCTCAACTCTACATACA+TGG - chr1_3:68182404-68182423 Msa0136360:three_prime_UTR 40.0%
TTTGTAGGATTTGAGCGAAG+AGG + chr1_3:68182510-68182529 None:intergenic 40.0%
! AAGGGGGAACGATATTTTGT+AGG + chr1_3:68182525-68182544 None:intergenic 40.0%
TTCATAGCATCAGCTGTAGT+TGG + chr1_3:68182825-68182844 None:intergenic 40.0%
CTACAGCTGATGCTATGAAA+AGG - chr1_3:68182826-68182845 Msa0136360:intron 40.0%
GCTATGAAAAGGACCATTTC+TGG - chr1_3:68182837-68182856 Msa0136360:intron 40.0%
!! AAGGACCATTTCTGGTATGT+TGG - chr1_3:68182845-68182864 Msa0136360:intron 40.0%
!! AGGACCATTTCTGGTATGTT+GGG - chr1_3:68182846-68182865 Msa0136360:intron 40.0%
! GTTCTTGCTATGGAGCTAAT+CGG - chr1_3:68183010-68183029 Msa0136360:CDS 40.0%
TGTCGACATGTTGTCAATCT+CGG + chr1_3:68183284-68183303 None:intergenic 40.0%
AGTCCCCTAACTTAAAGGTA+GGG + chr1_3:68183427-68183446 None:intergenic 40.0%
TAGTCCCCTAACTTAAAGGT+AGG + chr1_3:68183428-68183447 None:intergenic 40.0%
!!! GCTGTGTTTTTGAGTTTAGG+AGG + chr1_3:68183480-68183499 None:intergenic 40.0%
TGGACAATCTATTCGGAGAA+TGG - chr1_3:68183513-68183532 Msa0136360:intron 40.0%
AATCTATTCGGAGAATGGAG+AGG - chr1_3:68183518-68183537 Msa0136360:intron 40.0%
!! TGCTGAGTATAGGCTTTGTT+TGG - chr1_3:68183726-68183745 Msa0136360:intron 40.0%
ATAATGCGATGAATCGTGTG+TGG - chr1_3:68184050-68184069 Msa0136360:CDS 40.0%
ACATTAGAGAGAGAGAGAAC+TGG - chr1_3:68184127-68184146 Msa0136360:intron 40.0%
CATTAGAGAGAGAGAGAACT+GGG - chr1_3:68184128-68184147 Msa0136360:intron 40.0%
ATTAGAGAGAGAGAGAACTG+GGG - chr1_3:68184129-68184148 Msa0136360:intron 40.0%
! CCCACCATCTTTTCTACTTT+AGG + chr1_3:68184161-68184180 None:intergenic 40.0%
GCATGTAGAGATAAGACTTG+TGG - chr1_3:68184202-68184221 Msa0136360:intron 40.0%
ATAATCAACACCGAAGGATG+AGG + chr1_3:68184481-68184500 None:intergenic 40.0%
!! TCATCCTTCGGTGTTGATTA+TGG - chr1_3:68184480-68184499 Msa0136360:intron 40.0%
ACAAAAGGCAAAACCTGTTC+AGG + chr1_3:68184732-68184751 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr1_3:68185100-68185119 Msa0136360:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr1_3:68185144-68185163 Msa0136360:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr1_3:68185145-68185164 Msa0136360:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr1_3:68185176-68185195 Msa0136360:intron 40.0%
TATAACCAACCCTGCTTAGT+TGG - chr1_3:68185281-68185300 Msa0136360:intron 40.0%
! GAGTCTTTTCCAACTAAGCA+GGG + chr1_3:68185293-68185312 None:intergenic 40.0%
! AGAGTCTTTTCCAACTAAGC+AGG + chr1_3:68185294-68185313 None:intergenic 40.0%
!! GTGACATTATTAGCTTGTGC+AGG - chr1_3:68185441-68185460 Msa0136360:intron 40.0%
AAGCTCAGGGGATGTAAATT+CGG + chr1_3:68185556-68185575 None:intergenic 40.0%
ATTTACATCCCCTGAGCTTA+AGG - chr1_3:68185557-68185576 Msa0136360:intron 40.0%
ATCATCCTATCTGTTGTCCA+CGG - chr1_3:68185582-68185601 Msa0136360:intron 40.0%
GCATTCTCTGATGTAGTAGA+GGG + chr1_3:68185645-68185664 None:intergenic 40.0%
TGCATTCTCTGATGTAGTAG+AGG + chr1_3:68185646-68185665 None:intergenic 40.0%
ACATCAGAGAATGCAACAGT+TGG - chr1_3:68185651-68185670 Msa0136360:intron 40.0%
GAAATACTGACCAAAAGAGC+AGG + chr1_3:68185776-68185795 None:intergenic 40.0%
AGTTCAGAAACCAGATCAAC+AGG + chr1_3:68185956-68185975 None:intergenic 40.0%
CCAATTCCATTCGATACTCA+AGG + chr1_3:68186044-68186063 None:intergenic 40.0%
!! CCTTGAGTATCGAATGGAAT+TGG - chr1_3:68186041-68186060 Msa0136360:intron 40.0%
!! TGAGTATCGAATGGAATTGG+CGG - chr1_3:68186044-68186063 Msa0136360:intron 40.0%
TCAATCAGTGTATAGAGGCA+TGG - chr1_3:68186151-68186170 Msa0136360:intron 40.0%
TGGAAGCAATGATATCTCCT+CGG + chr1_3:68186243-68186262 None:intergenic 40.0%
! ACCGCTTTCAACTTTTGTGA+TGG + chr1_3:68186323-68186342 None:intergenic 40.0%
TCACAAAAGTTGAAAGCGGT+TGG - chr1_3:68186323-68186342 Msa0136360:CDS 40.0%
TCAACTTCATCTTGCATCTG+AGG + chr1_3:68186417-68186436 None:intergenic 40.0%
TTGGAATCTGTTAGCCGACT+AGG - chr1_3:68182162-68182181 Msa0136360:three_prime_UTR 45.0%
TAGAGATACCACATCCATCG+TGG - chr1_3:68182191-68182210 Msa0136360:three_prime_UTR 45.0%
! GTCTTCCAAGATTGGTCCAA+AGG + chr1_3:68182219-68182238 None:intergenic 45.0%
CTAGCAAGATAAACACACGG+TGG + chr1_3:68182246-68182265 None:intergenic 45.0%
GCGCTAGCAAGATAAACACA+CGG + chr1_3:68182249-68182268 None:intergenic 45.0%
GACAGTGAAACCGAAAGAGA+AGG - chr1_3:68182324-68182343 Msa0136360:three_prime_UTR 45.0%
CTTCTTCCTCCCTTCTCTTT+CGG + chr1_3:68182337-68182356 None:intergenic 45.0%
!!! GAGAAAGGTGTTGGGTTTTG+TGG - chr1_3:68182376-68182395 Msa0136360:three_prime_UTR 45.0%
GAGAAAGAGAAGGAAGGAGA+GGG + chr1_3:68182486-68182505 None:intergenic 45.0%
AGAGAAAGAGAAGGAAGGAG+AGG + chr1_3:68182487-68182506 None:intergenic 45.0%
AGAGGAGAGAAAGAGAAGGA+AGG + chr1_3:68182492-68182511 None:intergenic 45.0%
AGAAGCGAGAACAAGAAAGG+GGG + chr1_3:68182541-68182560 None:intergenic 45.0%
CAGAAGCGAGAACAAGAAAG+GGG + chr1_3:68182542-68182561 None:intergenic 45.0%
GCAGAAGCGAGAACAAGAAA+GGG + chr1_3:68182543-68182562 None:intergenic 45.0%
TGCAGAAGCGAGAACAAGAA+AGG + chr1_3:68182544-68182563 None:intergenic 45.0%
TACCTTGGAGGTAAAGTCGT+TGG + chr1_3:68182577-68182596 None:intergenic 45.0%
ATAGCATCAGCTGTAGTTGG+CGG + chr1_3:68182822-68182841 None:intergenic 45.0%
!! GGACCATTTCTGGTATGTTG+GGG - chr1_3:68182847-68182866 Msa0136360:intron 45.0%
CAACCCCAACATACCAGAAA+TGG + chr1_3:68182853-68182872 None:intergenic 45.0%
ATGTCGTTGTTGAGGCTTTG+TGG - chr1_3:68182892-68182911 Msa0136360:intron 45.0%
! TGTCGTTGTTGAGGCTTTGT+GGG - chr1_3:68182893-68182912 Msa0136360:intron 45.0%
!! GTATTGGAGGAGGGTTTTGA+GGG + chr1_3:68183348-68183367 None:intergenic 45.0%
! TGTATTGGAGGAGGGTTTTG+AGG + chr1_3:68183349-68183368 None:intergenic 45.0%
GCTTCTCATATTCCCCCATT+TGG + chr1_3:68183673-68183692 None:intergenic 45.0%
CATTGCGCAATGCTGAGTAT+AGG - chr1_3:68183716-68183735 Msa0136360:intron 45.0%
! CTCGTGAGGCTTTTCAACTT+TGG + chr1_3:68183881-68183900 None:intergenic 45.0%
CAAAGTTGAAAAGCCTCACG+AGG - chr1_3:68183879-68183898 Msa0136360:intron 45.0%
GACGTTGACATTCAAGACCT+TGG - chr1_3:68183901-68183920 Msa0136360:intron 45.0%
CTTCGGCAGATATTTGACCA+AGG + chr1_3:68183921-68183940 None:intergenic 45.0%
GAAATAGGCTCAGGTGGTTT+GGG - chr1_3:68184180-68184199 Msa0136360:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_3:68184404-68184423 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_3:68184405-68184424 None:intergenic 45.0%
TCATGGTATGCCTCATCCTT+CGG - chr1_3:68184468-68184487 Msa0136360:intron 45.0%
GAGACCATAATCAACACCGA+AGG + chr1_3:68184487-68184506 None:intergenic 45.0%
TTAAAGCTGAGGGGTAACCT+TGG - chr1_3:68185064-68185083 Msa0136360:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG - chr1_3:68185106-68185125 Msa0136360:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG - chr1_3:68185107-68185126 Msa0136360:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr1_3:68185140-68185159 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr1_3:68185172-68185191 Msa0136360:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr1_3:68185175-68185194 Msa0136360:intron 45.0%
! CTTTTCCAACTAAGCAGGGT+TGG + chr1_3:68185289-68185308 None:intergenic 45.0%
! TGTGCATGTTGCTATTGAGC+AGG - chr1_3:68185518-68185537 Msa0136360:intron 45.0%
GATGATGTCCTTAAGCTCAG+GGG + chr1_3:68185568-68185587 None:intergenic 45.0%
GGATGATGTCCTTAAGCTCA+GGG + chr1_3:68185569-68185588 None:intergenic 45.0%
AGGATGATGTCCTTAAGCTC+AGG + chr1_3:68185570-68185589 None:intergenic 45.0%
ATGCATCTTAGGAGAAAGGG+TGG + chr1_3:68185616-68185635 None:intergenic 45.0%
!! GAGGGCTTTGAATGCATCTT+AGG + chr1_3:68185627-68185646 None:intergenic 45.0%
ACAGTTGGATCAGCAAATGC+TGG - chr1_3:68185666-68185685 Msa0136360:intron 45.0%
CAGTTGGATCAGCAAATGCT+GGG - chr1_3:68185667-68185686 Msa0136360:intron 45.0%
ATCAGCAAATGCTGGGAATG+AGG - chr1_3:68185674-68185693 Msa0136360:intron 45.0%
ATACTGACCAAAAGAGCAGG+CGG + chr1_3:68185773-68185792 None:intergenic 45.0%
CTGTTGGGACACTATCTTAG+AGG - chr1_3:68186018-68186037 Msa0136360:intron 45.0%
!! TAGAGGCCTTGAGTATCGAA+TGG - chr1_3:68186035-68186054 Msa0136360:intron 45.0%
TGGAGCCTTTGGACCAATCT+TGG - chr1_3:68182211-68182230 Msa0136360:three_prime_UTR 50.0%
GTGAAACCGAAAGAGAAGGG+AGG - chr1_3:68182328-68182347 Msa0136360:three_prime_UTR 50.0%
AAGAGAAGGAAGGAGAGGGA+CGG + chr1_3:68182482-68182501 None:intergenic 50.0%
GCGAAGAGGAGAGAAAGAGA+AGG + chr1_3:68182496-68182515 None:intergenic 50.0%
GGTAAAGTCGTTGGAGGAGT+GGG + chr1_3:68182568-68182587 None:intergenic 50.0%
AGGTAAAGTCGTTGGAGGAG+TGG + chr1_3:68182569-68182588 None:intergenic 50.0%
CTTGGAGGTAAAGTCGTTGG+AGG + chr1_3:68182574-68182593 None:intergenic 50.0%
CTCCAACGACTTTACCTCCA+AGG - chr1_3:68182572-68182591 Msa0136360:three_prime_UTR 50.0%
! AGGGGACGACTTTGGGAAAA+AGG + chr1_3:68183460-68183479 None:intergenic 50.0%
GTTTAGGAGGGGACGACTTT+GGG + chr1_3:68183467-68183486 None:intergenic 50.0%
AGTTTAGGAGGGGACGACTT+TGG + chr1_3:68183468-68183487 None:intergenic 50.0%
CAGAGATCTTGAGAAGCCGA+AGG - chr1_3:68183771-68183790 Msa0136360:intron 50.0%
TGAATGTCAACGTCCTCGTG+AGG + chr1_3:68183895-68183914 None:intergenic 50.0%
!! AGATGGTGGGAAATAGGCTC+AGG - chr1_3:68184171-68184190 Msa0136360:intron 50.0%
GGAAATAGGCTCAGGTGGTT+TGG - chr1_3:68184179-68184198 Msa0136360:intron 50.0%
ACTAAGTGGGGTCGACTACA+AGG + chr1_3:68184392-68184411 None:intergenic 50.0%
TTGTAGTCGACCCCACTTAG+TGG - chr1_3:68184391-68184410 Msa0136360:intron 50.0%
TGTAGTCGACCCCACTTAGT+GGG - chr1_3:68184392-68184411 Msa0136360:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_3:68184406-68184425 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_3:68184403-68184422 Msa0136360:intron 50.0%
CTTAGTGGGATAAGGCTTGG+TGG - chr1_3:68184406-68184425 Msa0136360:intron 50.0%
AGGAGCTACGTGAAGTGAAG+AGG - chr1_3:68184628-68184647 Msa0136360:intron 50.0%
GAGATCGCTTCAACCTGAAC+AGG - chr1_3:68184716-68184735 Msa0136360:intron 50.0%
GGTGCAATTCTATCTGGCCT+TGG - chr1_3:68184826-68184845 Msa0136360:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr1_3:68185084-68185103 None:intergenic 50.0%
TCTTAGGAGAAAGGGTGGCA+AGG + chr1_3:68185611-68185630 None:intergenic 50.0%
TGGGAATGAGGATTGTGCTG+AGG - chr1_3:68185686-68185705 Msa0136360:intron 50.0%
TACTGACCAAAAGAGCAGGC+GGG + chr1_3:68185772-68185791 None:intergenic 50.0%
TAATGTGGCGCCTGTTGATC+TGG - chr1_3:68185943-68185962 Msa0136360:CDS 50.0%
CGGCAGAAGCGACTAAAACT+TGG + chr1_3:68186223-68186242 None:intergenic 50.0%
!! AGTTTTAGTCGCTTCTGCCG+AGG - chr1_3:68186223-68186242 Msa0136360:CDS 50.0%
CAAAGGCTCCACGATGGATG+TGG + chr1_3:68182202-68182221 None:intergenic 55.0%
CACATCCATCGTGGAGCCTT+TGG - chr1_3:68182200-68182219 Msa0136360:three_prime_UTR 55.0%
TTGGTCCAAAGGCTCCACGA+TGG + chr1_3:68182208-68182227 None:intergenic 55.0%
ATGGAGAGGAAGAGAGGAGG+AGG + chr1_3:68182454-68182473 None:intergenic 55.0%
GAAGCGATGGAGAGGAAGAG+AGG + chr1_3:68182460-68182479 None:intergenic 55.0%
TGGTGGGAAATAGGCTCAGG+TGG - chr1_3:68184174-68184193 Msa0136360:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_3:68184398-68184417 Msa0136360:intron 55.0%
! AAGGTCACGGGTTCTAGTCC+TGG - chr1_3:68185119-68185138 Msa0136360:intron 55.0%
GGAGACCGTGGACAACAGAT+AGG + chr1_3:68185590-68185609 None:intergenic 55.0%
! ATCTTGCCCGCCTGCTCTTT+TGG - chr1_3:68185763-68185782 Msa0136360:intron 55.0%
TTCTCAATGACCCCCCTCGA+AGG - chr1_3:68185989-68186008 Msa0136360:CDS 55.0%
AACAGCATGCACCTTCGAGG+GGG + chr1_3:68186003-68186022 None:intergenic 55.0%
CAACAGCATGCACCTTCGAG+GGG + chr1_3:68186004-68186023 None:intergenic 55.0%
CCAACAGCATGCACCTTCGA+GGG + chr1_3:68186005-68186024 None:intergenic 55.0%
! CCTCGAAGGTGCATGCTGTT+GGG - chr1_3:68186003-68186022 Msa0136360:CDS 55.0%
! CGGTTGGCATTGCTGTTGCT+GGG - chr1_3:68186339-68186358 Msa0136360:exon 55.0%
GGAGGAGAGGATGGAGGGAA+GGG + chr1_3:68182433-68182452 None:intergenic 60.0%
AGGAGGAGAGGATGGAGGGA+AGG + chr1_3:68182434-68182453 None:intergenic 60.0%
GAGGAGGAGGAGAGGATGGA+GGG + chr1_3:68182438-68182457 None:intergenic 60.0%
AGAGGAGGAGGAGGAGAGGA+TGG + chr1_3:68182442-68182461 None:intergenic 60.0%
GAAGAGAGGAGGAGGAGGAG+AGG + chr1_3:68182446-68182465 None:intergenic 60.0%
GAGAGGAAGAGAGGAGGAGG+AGG + chr1_3:68182451-68182470 None:intergenic 60.0%
GCGATGGAGAGGAAGAGAGG+AGG + chr1_3:68182457-68182476 None:intergenic 60.0%
AAGGAGAGGGACGGAAGCGA+TGG + chr1_3:68182473-68182492 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr1_3:68185073-68185092 Msa0136360:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr1_3:68185188-68185207 Msa0136360:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr1_3:68185215-68185234 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr1_3:68185216-68185235 None:intergenic 60.0%
AAAGGGTGGCAAGGAGACCG+TGG + chr1_3:68185602-68185621 None:intergenic 60.0%
ACAGCATGCACCTTCGAGGG+GGG + chr1_3:68186002-68186021 None:intergenic 60.0%
! CCCTCGAAGGTGCATGCTGT+TGG - chr1_3:68186002-68186021 Msa0136360:CDS 60.0%
CCCAACAGCATGCACCTTCG+AGG + chr1_3:68186006-68186025 None:intergenic 60.0%
! GCGGTTGGCATTGCTGTTGC+TGG - chr1_3:68186338-68186357 Msa0136360:exon 60.0%
GGAGGAGGAGGAGAGGATGG+AGG + chr1_3:68182439-68182458 None:intergenic 65.0%
GAGGGACGGAAGCGATGGAG+AGG + chr1_3:68182468-68182487 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_3:68185190-68185209 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr1_3:68185203-68185222 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr1_3:68185204-68185223 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr1_3:68185203-68185222 Msa0136360:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr1_3:68185204-68185223 Msa0136360:intron 65.0%
TGCGGGAGCTTCAGTGCACC+AGG - chr1_3:68185221-68185240 Msa0136360:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr1_3:68185205-68185224 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr1_3:68185209-68185228 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr1_3:68185210-68185229 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 68182091 68186681 68182091 ID=Msa0136360;Name=Msa0136360
chr1_3 mRNA 68182091 68186681 68182091 ID=Msa0136360-mRNA-1;Parent=Msa0136360;Name=Msa0136360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=332|1|1|1|0.8|1|6|553|375
chr1_3 exon 68182091 68182761 68182091 ID=Msa0136360-mRNA-1:exon:23510;Parent=Msa0136360-mRNA-1
chr1_3 exon 68182988 68183232 68182988 ID=Msa0136360-mRNA-1:exon:23509;Parent=Msa0136360-mRNA-1
chr1_3 exon 68184035 68184142 68184035 ID=Msa0136360-mRNA-1:exon:23508;Parent=Msa0136360-mRNA-1
chr1_3 exon 68184782 68185061 68184782 ID=Msa0136360-mRNA-1:exon:23507;Parent=Msa0136360-mRNA-1
chr1_3 exon 68185817 68186022 68185817 ID=Msa0136360-mRNA-1:exon:23506;Parent=Msa0136360-mRNA-1
chr1_3 exon 68186179 68186681 68186179 ID=Msa0136360-mRNA-1:exon:23505;Parent=Msa0136360-mRNA-1
chr1_3 five_prime_UTR 68186350 68186681 68186350 ID=Msa0136360-mRNA-1:five_prime_utr;Parent=Msa0136360-mRNA-1
chr1_3 CDS 68186179 68186349 68186179 ID=Msa0136360-mRNA-1:cds;Parent=Msa0136360-mRNA-1
chr1_3 CDS 68185817 68186022 68185817 ID=Msa0136360-mRNA-1:cds;Parent=Msa0136360-mRNA-1
chr1_3 CDS 68184782 68185061 68184782 ID=Msa0136360-mRNA-1:cds;Parent=Msa0136360-mRNA-1
chr1_3 CDS 68184035 68184142 68184035 ID=Msa0136360-mRNA-1:cds;Parent=Msa0136360-mRNA-1
chr1_3 CDS 68182988 68183232 68182988 ID=Msa0136360-mRNA-1:cds;Parent=Msa0136360-mRNA-1
chr1_3 CDS 68182644 68182761 68182644 ID=Msa0136360-mRNA-1:cds;Parent=Msa0136360-mRNA-1
chr1_3 three_prime_UTR 68182091 68182643 68182091 ID=Msa0136360-mRNA-1:three_prime_utr;Parent=Msa0136360-mRNA-1
Gene Sequence

>Msa0136360

ATGGCAACCCTTCCCTCCATCCTCTCCTCCTCCTCCTCTCTTCCTCTCCATCGCTTCCGTCCCTCTCCTTCCTTCTCTTTCTCTCCTCTTCGCTCAAATCCTACAAAATATCGTTCCCCCTTTCTTGTTCTCGCTTCTGCATCCCACTCCTCCAACGACTTTACCTCCAAGAAATCTGCTTTATCGGAGTTGATACAAGAAATTGAACCTTTAGATGTGAGTAATATTCAGAAAGATGTTCCGCCAACTACAGCTGATGCTATGAAAAGGACCATTTCTGGTATGTTGGGGTTGCTTCCATCTGATCAATTTAATGTCGTTGTTGAGGCTTTGTGGGAACCTCTTTCCAAGTTACTCATTTCTTCAATGATGACTGGGTATACATTGCGCAATGCTGAGTATAGGCTTTGTTTGGAGAAAACTCTTGACATTTGCGACAGAGATCTTGAGAAGCCGAAGGCAGAAAGTACTAAGTTTGACTTACAAGACTTCCTACGTGACAGTGTAAATGTTATTGACTTTGGTAGAAACAATAATTTGTCTTCCAAAGTTGAAAAGCCTCACGAGGACGTTGACATTCAAGACCTTGGTCAAATATCTGCCGAAGCTCAAGAATATATTTCTAGTCTGCAATCTCGTTTGTCTTCCATAAAAAAGGAGCTACGTGAAGTGAAGAGGAAAAGTGCTGCTCTTCAAATGCAGCAATTTGTTGGAGAAGAAAAGAATGATTTACTGGATTACTTGAGATCGCTTCAACCTGAACAGGTAGCTCAGCTATCCGAATTTACATCCCCTGAGCTTAAGGACATCATCCTATCTGTTGTCCACGGTCTCCTTGCCACCCTTTCTCCTAAGATGCATTCAAAGCCCTCTACTACATCAGAGAATGCAACAGTTGGATCAGCAAATGCTGGGAATGAGGATTGTGCTGAGGTTGTTGAGAATTCTTCACTTAAATTTCAGCCTTTTATATCATTAACTCGGGACTATCTTGCCCGCCTGCTCTTTTGGTGCATGCTGTTGGGACACTATCTTAGAGGCCTTGAGTATCGAATGGAATTGGCGGAACTGCTATCCTTGACAAATGTTGCTGAGAATGGTGCTTCTGAGAATGAACAAATTGCTTGA
Protein sequence

>Msa0136360

MATLPSILSSSSSLPLHRFRPSPSFSFSPLRSNPTKYRSPFLVLASASHSSNDFTSKKSALSELIQEIEPLDVSNIQKDVPPTTADAMKRTISGMLGLLPSDQFNVVVEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKTLDICDRDLEKPKAESTKFDLQDFLRDSVNVIDFGRNNNLSSKVEKPHEDVDIQDLGQISAEAQEYISSLQSRLSSIKKELREVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKDIILSVVHGLLATLSPKMHSKPSTTSENATVGSANAGNEDCAEVVENSSLKFQPFISLTRDYLARLLFWCMLLGHYLRGLEYRMELAELLSLTNVAENGASENEQIA*