Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230360 | ABN08602.1 | 87.082 | 658 | 60 | 3 | 1 | 658 | 1 | 633 | 0.0 | 1026 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230360 | sp|Q1PEB4|Y4498_ARATH | 56.410 | 351 | 122 | 7 | 322 | 658 | 385 | 718 | 1.84e-110 | 352 |
| Msa0230360 | sp|Q1PEB4|Y4498_ARATH | 35.165 | 182 | 90 | 6 | 68 | 224 | 1 | 179 | 2.20e-18 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230360 | A2Q4Q2 | 87.082 | 658 | 60 | 3 | 1 | 658 | 1 | 633 | 0.0 | 1026 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011010 | Msa0230360 | 0.820087 | 8.253324e-53 | -8.615850e-47 |
| Msa0011040 | Msa0230360 | 0.813248 | 2.818382e-51 | -8.615850e-47 |
| Msa0013270 | Msa0230360 | 0.818630 | 1.773329e-52 | -8.615850e-47 |
| Msa0024650 | Msa0230360 | 0.805359 | 1.386615e-49 | -8.615850e-47 |
| Msa0025570 | Msa0230360 | 0.826375 | 2.808711e-54 | -8.615850e-47 |
| Msa0045810 | Msa0230360 | 0.815337 | 9.734096e-52 | -8.615850e-47 |
| Msa0048380 | Msa0230360 | 0.825167 | 5.431907e-54 | -8.615850e-47 |
| Msa0062190 | Msa0230360 | 0.807543 | 4.803019e-50 | -8.615850e-47 |
| Msa0073110 | Msa0230360 | 0.828404 | 9.161800e-55 | -8.615850e-47 |
| Msa0092220 | Msa0230360 | 0.820050 | 8.417386e-53 | -8.615850e-47 |
| Msa0106540 | Msa0230360 | 0.809171 | 2.158696e-50 | -8.615850e-47 |
| Msa0120450 | Msa0230360 | 0.801712 | 7.911866e-49 | -8.615850e-47 |
| Msa0121320 | Msa0230360 | 0.812746 | 3.630584e-51 | -8.615850e-47 |
| Msa0163690 | Msa0230360 | 0.813010 | 3.177137e-51 | -8.615850e-47 |
| Msa0166180 | Msa0230360 | 0.808046 | 3.753900e-50 | -8.615850e-47 |
| Msa0191900 | Msa0230360 | 0.933456 | 1.826816e-95 | -8.615850e-47 |
| Msa0193680 | Msa0230360 | 0.804196 | 2.425851e-49 | -8.615850e-47 |
| Msa0220090 | Msa0230360 | 0.804992 | 1.654897e-49 | -8.615850e-47 |
| Msa0230360 | Msa0299030 | 0.800011 | 1.760083e-48 | -8.615850e-47 |
| Msa0230360 | Msa0307630 | 0.803303 | 3.717274e-49 | -8.615850e-47 |
| Msa0230360 | Msa0312540 | 0.934564 | 3.321872e-96 | -8.615850e-47 |
| Msa0230360 | Msa0354600 | 0.819887 | 9.173150e-53 | -8.615850e-47 |
| Msa0230360 | Msa0364030 | -0.810532 | 1.099858e-50 | -8.615850e-47 |
| Msa0230360 | Msa0379480 | 0.803444 | 3.476077e-49 | -8.615850e-47 |
| Msa0230360 | Msa0386910 | 0.838305 | 3.112877e-57 | -8.615850e-47 |
| Msa0230360 | Msa0403740 | -0.810871 | 9.289807e-51 | -8.615850e-47 |
| Msa0230360 | Msa0423220 | 0.802636 | 5.107394e-49 | -8.615850e-47 |
| Msa0230360 | Msa0456450 | -0.807866 | 4.099105e-50 | -8.615850e-47 |
| Msa0230360 | Msa0457070 | -0.809330 | 1.996045e-50 | -8.615850e-47 |
| Msa0230360 | Msa0490100 | 0.801555 | 8.521270e-49 | -8.615850e-47 |
| Msa0230360 | Msa0496380 | 0.802860 | 4.591446e-49 | -8.615850e-47 |
| Msa0230360 | Msa0523720 | 0.831731 | 1.413429e-55 | -8.615850e-47 |
| Msa0230360 | Msa0540640 | 0.809154 | 2.177142e-50 | -8.615850e-47 |
| Msa0230360 | Msa0565700 | 0.807504 | 4.893921e-50 | -8.615850e-47 |
| Msa0230360 | Msa0567330 | 0.806968 | 6.355860e-50 | -8.615850e-47 |
| Msa0230360 | Msa0567570 | 0.802883 | 4.542077e-49 | -8.615850e-47 |
| Msa0230360 | Msa0576320 | 0.804389 | 2.211232e-49 | -8.615850e-47 |
| Msa0230360 | Msa0606600 | 0.816722 | 4.776797e-52 | -8.615850e-47 |
| Msa0230360 | Msa0629160 | 0.800405 | 1.463711e-48 | -8.615850e-47 |
| Msa0230360 | Msa0646010 | 0.800436 | 1.442366e-48 | -8.615850e-47 |
| Msa0230360 | Msa0646430 | 0.800722 | 1.261188e-48 | -8.615850e-47 |
| Msa0230360 | Msa0647300 | 0.812543 | 4.020612e-51 | -8.615850e-47 |
| Msa0230360 | Msa0680460 | 0.801995 | 6.921498e-49 | -8.615850e-47 |
| Msa0230360 | Msa0686830 | 0.821616 | 3.673636e-53 | -8.615850e-47 |
| Msa0230360 | Msa0707330 | 0.807466 | 4.986515e-50 | -8.615850e-47 |
| Msa0230360 | Msa0721930 | 0.800006 | 1.764707e-48 | -8.615850e-47 |
| Msa0230360 | Msa0774660 | 0.807076 | 6.030549e-50 | -8.615850e-47 |
| Msa0230360 | Msa0792410 | 0.802087 | 6.625961e-49 | -8.615850e-47 |
| Msa0230360 | Msa0795460 | 0.811495 | 6.805117e-51 | -8.615850e-47 |
| Msa0230360 | Msa0804170 | 0.810160 | 1.323374e-50 | -8.615850e-47 |
| Msa0230360 | Msa0967780 | 0.802425 | 5.644905e-49 | -8.615850e-47 |
| Msa0230360 | Msa0998660 | -0.800246 | 1.576938e-48 | -8.615850e-47 |
| Msa0230360 | Msa1029860 | 0.817015 | 4.104917e-52 | -8.615850e-47 |
| Msa0230360 | Msa1030320 | 0.810323 | 1.220298e-50 | -8.615850e-47 |
| Msa0230360 | Msa1068730 | 0.801076 | 1.067655e-48 | -8.615850e-47 |
| Msa0230360 | Msa1068780 | 0.805339 | 1.400394e-49 | -8.615850e-47 |
| Msa0230360 | Msa1079820 | 0.811094 | 8.313318e-51 | -8.615850e-47 |
| Msa0230360 | Msa1108560 | 0.830552 | 2.754802e-55 | -8.615850e-47 |
| Msa0230360 | Msa1115980 | 0.812431 | 4.253949e-51 | -8.615850e-47 |
| Msa0230360 | Msa1147010 | 0.801590 | 8.382391e-49 | -8.615850e-47 |
| Msa0230360 | Msa1156730 | 0.801207 | 1.003755e-48 | -8.615850e-47 |
| Msa0230360 | Msa1156740 | 0.812176 | 4.835184e-51 | -8.615850e-47 |
| Msa0230360 | Msa1157210 | 0.805439 | 1.334155e-49 | -8.615850e-47 |
| Msa0230360 | Msa1165460 | 0.813403 | 2.605147e-51 | -8.615850e-47 |
| Msa0230360 | Msa1181090 | 0.820722 | 5.903340e-53 | -8.615850e-47 |
| Msa0230360 | Msa1188080 | 0.804445 | 2.152694e-49 | -8.615850e-47 |
| Msa0230360 | Msa1245530 | 0.810413 | 1.167052e-50 | -8.615850e-47 |
| Msa0230360 | Msa1263110 | 0.822368 | 2.458872e-53 | -8.615850e-47 |
| Msa0230360 | Msa1321010 | 0.805935 | 1.049627e-49 | -8.615850e-47 |
| Msa0230360 | Msa1322500 | 0.821299 | 4.346696e-53 | -8.615850e-47 |
| Msa0230360 | Msa1342360 | -0.806455 | 8.158362e-50 | -8.615850e-47 |
| Msa0230360 | Msa1361980 | 0.821764 | 3.393895e-53 | -8.615850e-47 |
| Msa0230360 | Msa1368420 | 0.834584 | 2.753948e-56 | -8.615850e-47 |
| Msa0230360 | Msa1380740 | 0.804878 | 1.748179e-49 | -8.615850e-47 |
| Msa0230360 | Msa1383220 | 0.835515 | 1.604046e-56 | -8.615850e-47 |
| Msa0230360 | Msa1401280 | 0.934339 | 4.707471e-96 | -8.615850e-47 |
| Msa0230360 | Msa1405830 | 0.802522 | 5.390798e-49 | -8.615850e-47 |
| Msa0230360 | Msa1407810 | 0.807729 | 4.384961e-50 | -8.615850e-47 |
| Msa0230360 | Msa1413020 | 0.810467 | 1.136109e-50 | -8.615850e-47 |
| Msa0230360 | Msa1437780 | 0.807765 | 4.308853e-50 | -8.615850e-47 |
| Msa0230360 | Msa1462610 | 0.801251 | 9.835936e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230360 | MtrunA17_Chr2g0281791 | 87.043 | 656 | 60 | 3 | 3 | 658 | 36 | 666 | 0.0 | 1021 |
| Msa0230360 | MtrunA17_Chr4g0047791 | 46.605 | 324 | 125 | 9 | 4 | 287 | 36 | 351 | 5.83e-72 | 248 |
| Msa0230360 | MtrunA17_Chr5g0430701 | 24.427 | 262 | 176 | 6 | 383 | 637 | 160 | 406 | 1.38e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230360 | AT1G61080.3 | 59.563 | 366 | 123 | 8 | 316 | 656 | 565 | 930 | 1.32e-114 | 365 |
| Msa0230360 | AT1G61080.3 | 29.964 | 277 | 149 | 5 | 32 | 269 | 94 | 364 | 4.98e-26 | 114 |
| Msa0230360 | AT1G61080.4 | 59.563 | 366 | 123 | 8 | 316 | 656 | 566 | 931 | 1.52e-114 | 365 |
| Msa0230360 | AT1G61080.4 | 30.686 | 277 | 147 | 6 | 32 | 269 | 95 | 365 | 5.35e-26 | 114 |
| Msa0230360 | AT1G61080.5 | 59.563 | 366 | 123 | 8 | 316 | 656 | 578 | 943 | 2.12e-114 | 365 |
| Msa0230360 | AT1G61080.5 | 30.686 | 277 | 147 | 6 | 32 | 269 | 107 | 377 | 5.37e-26 | 114 |
| Msa0230360 | AT1G61080.2 | 59.563 | 366 | 123 | 8 | 316 | 656 | 577 | 942 | 2.19e-114 | 365 |
| Msa0230360 | AT1G61080.2 | 30.686 | 277 | 147 | 6 | 32 | 269 | 106 | 376 | 5.31e-26 | 114 |
| Msa0230360 | AT1G61080.6 | 59.563 | 366 | 123 | 8 | 316 | 656 | 574 | 939 | 2.91e-114 | 365 |
| Msa0230360 | AT1G61080.6 | 29.720 | 286 | 147 | 6 | 32 | 269 | 94 | 373 | 1.36e-23 | 107 |
| Msa0230360 | AT4G04980.3 | 56.410 | 351 | 122 | 7 | 322 | 658 | 385 | 718 | 1.87e-111 | 352 |
| Msa0230360 | AT4G04980.3 | 35.165 | 182 | 90 | 6 | 68 | 224 | 1 | 179 | 2.23e-19 | 93.2 |
| Msa0230360 | AT4G04980.1 | 56.734 | 349 | 122 | 5 | 322 | 657 | 541 | 873 | 1.08e-109 | 351 |
| Msa0230360 | AT4G04980.1 | 36.239 | 218 | 111 | 6 | 32 | 224 | 121 | 335 | 3.44e-29 | 124 |
| Msa0230360 | AT1G11070.1 | 58.763 | 291 | 104 | 3 | 378 | 652 | 449 | 739 | 5.09e-103 | 330 |
| Msa0230360 | AT1G11070.4 | 58.763 | 291 | 104 | 3 | 378 | 652 | 450 | 740 | 5.16e-103 | 330 |
| Msa0230360 | AT1G61080.1 | 57.966 | 295 | 80 | 7 | 373 | 656 | 645 | 906 | 3.99e-91 | 302 |
| Msa0230360 | AT1G61080.1 | 29.720 | 286 | 147 | 6 | 32 | 269 | 94 | 373 | 7.22e-24 | 107 |
| Msa0230360 | AT1G11070.5 | 58.621 | 174 | 69 | 1 | 378 | 548 | 363 | 536 | 1.28e-55 | 199 |
| Msa0230360 | AT1G11070.3 | 58.621 | 174 | 69 | 1 | 378 | 548 | 450 | 623 | 3.30e-55 | 199 |
| Msa0230360 | AT1G11070.2 | 58.621 | 174 | 69 | 1 | 378 | 548 | 450 | 623 | 3.30e-55 | 199 |
| Msa0230360 | AT4G04980.2 | 49.451 | 182 | 66 | 6 | 322 | 494 | 541 | 705 | 6.77e-32 | 132 |
| Msa0230360 | AT4G04980.2 | 36.239 | 218 | 111 | 6 | 32 | 224 | 121 | 335 | 2.29e-29 | 124 |
| Msa0230360 | AT1G07120.1 | 25.221 | 226 | 157 | 4 | 430 | 649 | 165 | 384 | 5.24e-15 | 77.8 |
Find 151 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAACACAGTTGAGAAAT+TGG | 0.160238 | 2_2:-2517020 | Msa0230360:CDS |
| TTGGAGCAGGGAGATCTTTA+AGG | 0.194552 | 2_2:-2516697 | Msa0230360:CDS |
| CATTTCCTTTGTCTTGAAAT+TGG | 0.211331 | 2_2:+2516076 | None:intergenic |
| GGGCTTTCCAATTTGCATTT+AGG | 0.213399 | 2_2:-2515309 | Msa0230360:CDS |
| GGCTTTCCAATTTGCATTTA+GGG | 0.240517 | 2_2:-2515308 | Msa0230360:CDS |
| AAAGATTGAAACCTGATCTA+TGG | 0.244726 | 2_2:+2517876 | None:intergenic |
| GGACTTAGAAGGACAGATTT+TGG | 0.271135 | 2_2:+2517256 | None:intergenic |
| TAAACCTTTGAAGGTTTCTT+TGG | 0.278000 | 2_2:+2518221 | None:intergenic |
| ATGCATAGCTATGGTTGATT+AGG | 0.299945 | 2_2:+2515208 | None:intergenic |
| AGCAGCACTCTTCAACAAAT+TGG | 0.300415 | 2_2:-2515839 | Msa0230360:CDS |
| TATAAACCCTAAATGCAAAT+TGG | 0.306553 | 2_2:+2515302 | None:intergenic |
| TTTAGGGTTTATACATTTGC+TGG | 0.308782 | 2_2:-2515292 | Msa0230360:CDS |
| CAAGAAATTGACAAATATTA+AGG | 0.309643 | 2_2:-2517905 | Msa0230360:CDS |
| TAGGAGTTGCAAACTTTCTT+TGG | 0.316518 | 2_2:+2517310 | None:intergenic |
| CTGAAAAGATCAACACAATT+AGG | 0.318718 | 2_2:-2516656 | Msa0230360:CDS |
| TTGCATGGAGTTAGCACTTA+AGG | 0.323486 | 2_2:-2515488 | Msa0230360:intron |
| CAAAACAGAATTAGATGCTT+TGG | 0.330099 | 2_2:-2515617 | Msa0230360:CDS |
| CATACCTAATTGTTGCATAT+TGG | 0.331004 | 2_2:+2517492 | None:intergenic |
| GATCGAACGTTATTTCAATA+AGG | 0.339829 | 2_2:-2515752 | Msa0230360:intron |
| ACATCACTGTAAACCTTTGA+AGG | 0.351401 | 2_2:+2518212 | None:intergenic |
| GGAAGTGGAGGAGGAGGTGG+TGG | 0.364759 | 2_2:+2516974 | None:intergenic |
| ACTCTCAAGGGAAAAGTAGA+AGG | 0.371196 | 2_2:-2516620 | Msa0230360:CDS |
| TCAATGGAGTGGTCATTTAT+AGG | 0.372738 | 2_2:-2518179 | Msa0230360:CDS |
| GACAAGGATGGTGGAGGTAT+TGG | 0.379470 | 2_2:+2516806 | None:intergenic |
| GGAGGTGGTGGCAGCGGCAG+CGG | 0.382196 | 2_2:+2516986 | None:intergenic |
| CTCTAGCAGAGATGACAAAA+AGG | 0.382369 | 2_2:-2516511 | Msa0230360:intron |
| TTAACTGCCACTTCACTTTG+TGG | 0.383973 | 2_2:+2516932 | None:intergenic |
| AGAGACGGTGGAGGTGGTGA+TGG | 0.389439 | 2_2:+2516845 | None:intergenic |
| TTCTTGATTGAGATGATCCT+TGG | 0.389964 | 2_2:+2517922 | None:intergenic |
| GGAGGAGGAGGTGGTGGCAG+CGG | 0.393388 | 2_2:+2516980 | None:intergenic |
| GAAGAGATTCAACATCTTTG+TGG | 0.395126 | 2_2:+2516036 | None:intergenic |
| TGTGGCAATTGATGTGTTGA+TGG | 0.397743 | 2_2:+2516950 | None:intergenic |
| AGATGTGATATCTGAATTGT+AGG | 0.400173 | 2_2:+2517291 | None:intergenic |
| TGCTAACTCCATGCAATTTG+AGG | 0.403026 | 2_2:+2515495 | None:intergenic |
| AACACCAATATGCAACAATT+AGG | 0.405159 | 2_2:-2517496 | Msa0230360:intron |
| GATAAGCGCTTTAAATCAAT+CGG | 0.406062 | 2_2:+2517172 | None:intergenic |
| AGCATTGGCGGTGGAGGAGC+TGG | 0.406365 | 2_2:+2516758 | None:intergenic |
| TCTCTAAGAATTCAAGCTCT+TGG | 0.409263 | 2_2:-2517205 | Msa0230360:CDS |
| CCGCCACTGTCTCTAGCCTT+AGG | 0.409302 | 2_2:-2516887 | Msa0230360:CDS |
| GACGGTGGAGGTGGTGATGG+GGG | 0.409722 | 2_2:+2516848 | None:intergenic |
| GGTGGAAGTGGAGGAGGAGG+TGG | 0.410003 | 2_2:+2516971 | None:intergenic |
| TGCATAGCTATGGTTGATTA+GGG | 0.412933 | 2_2:+2515209 | None:intergenic |
| TGTGAGGCTTTAAAGAGTCT+TGG | 0.424686 | 2_2:-2517592 | Msa0230360:CDS |
| CTCCCTGCTCCAAGTGGAGG+TGG | 0.427390 | 2_2:+2516707 | None:intergenic |
| CCGCCAATGCTCCGTGGAAA+CGG | 0.428552 | 2_2:-2516746 | Msa0230360:CDS |
| ATAGCTTCTAGCTTCTTTGA+TGG | 0.434446 | 2_2:+2515871 | None:intergenic |
| CCACGGAGCATTGGCGGTGG+AGG | 0.434534 | 2_2:+2516752 | None:intergenic |
| ACCTTTGAAGGTTTCTTTGG+TGG | 0.435127 | 2_2:+2518224 | None:intergenic |
| GGTGGGAGAAACACTGCAAT+TGG | 0.435680 | 2_2:-2516572 | Msa0230360:CDS |
| GTTGAAGTAGATGATGATAT+TGG | 0.437036 | 2_2:+2517235 | None:intergenic |
| TGACAAACTCACAAGAGAAT+TGG | 0.442162 | 2_2:-2515251 | Msa0230360:CDS |
| AAAGGTTTACAGTGATGTAA+AGG | 0.443719 | 2_2:-2518207 | Msa0230360:CDS |
| CGCATTAATAATAGTAGTGA+TGG | 0.451581 | 2_2:-2515367 | Msa0230360:CDS |
| AAGGTTTACAGTGATGTAAA+GGG | 0.455315 | 2_2:-2518206 | Msa0230360:CDS |
| AGTGGCGGCGGCAAAGGTGG+TGG | 0.457567 | 2_2:+2516902 | None:intergenic |
| CCGTTTCCACGGAGCATTGG+CGG | 0.461554 | 2_2:+2516746 | None:intergenic |
| TCTGTTCATAGGTGTTATCA+AGG | 0.461674 | 2_2:-2515906 | Msa0230360:intron |
| AGAAGTCGAATTCGATGTTA+TGG | 0.462603 | 2_2:+2515557 | None:intergenic |
| TCACCACCTCCACCGTCTCT+AGG | 0.465365 | 2_2:-2516842 | Msa0230360:CDS |
| AATGTGGTGGTAAGTTGCTT+TGG | 0.468365 | 2_2:-2515333 | Msa0230360:CDS |
| TGATGTGTTGATGGTGGAAG+TGG | 0.469576 | 2_2:+2516959 | None:intergenic |
| TAAGGACAAGCCCATAGATC+AGG | 0.470012 | 2_2:-2517887 | Msa0230360:intron |
| CCACCACCTCCACTTGGAGC+AGG | 0.473254 | 2_2:-2516710 | Msa0230360:CDS |
| GTGGTGGTAAGTTGCTTTGG+AGG | 0.474879 | 2_2:-2515330 | Msa0230360:CDS |
| CTTTGTCTTCAGAGACATCA+TGG | 0.476591 | 2_2:-2518114 | Msa0230360:CDS |
| TGATGTAAAGGGAGAGTCAA+TGG | 0.478808 | 2_2:-2518195 | Msa0230360:CDS |
| GGCGGCGGCAAAGGTGGTGG+TGG | 0.479458 | 2_2:+2516905 | None:intergenic |
| TCTTGATTGAGATGATCCTT+GGG | 0.484669 | 2_2:+2517923 | None:intergenic |
| CCTGCTCCAAGTGGAGGTGG+TGG | 0.484761 | 2_2:+2516710 | None:intergenic |
| CAAAGTTGTAAATCATGAAA+AGG | 0.485977 | 2_2:-2517068 | Msa0230360:CDS |
| CCATCCTTGTCCATGAAACC+TGG | 0.488336 | 2_2:-2516794 | Msa0230360:CDS |
| GGCGGTGGAGGAGCTGGAGC+CGG | 0.488348 | 2_2:+2516764 | None:intergenic |
| AGCCTCAAAGGAAAATCGTC+TGG | 0.489413 | 2_2:-2516593 | Msa0230360:CDS |
| GAGACGGTGGAGGTGGTGAT+GGG | 0.490134 | 2_2:+2516846 | None:intergenic |
| AGAGACAGTGGCGGCGGCAA+AGG | 0.491312 | 2_2:+2516896 | None:intergenic |
| TAGCTTCTAGCTTCTTTGAT+GGG | 0.494409 | 2_2:+2515872 | None:intergenic |
| CGGAGATGATCCAGGTTTCA+TGG | 0.499468 | 2_2:+2516784 | None:intergenic |
| GTTGATGGTGGAAGTGGAGG+AGG | 0.500360 | 2_2:+2516965 | None:intergenic |
| GGAGTGGTCATTTATAGGTA+TGG | 0.501583 | 2_2:-2518174 | Msa0230360:CDS |
| CCTCCGTTTCCACGGAGCAT+TGG | 0.508023 | 2_2:+2516743 | None:intergenic |
| AAGATTGAAACCTGATCTAT+GGG | 0.508280 | 2_2:+2517877 | None:intergenic |
| GATGGTGGAAGTGGAGGAGG+AGG | 0.509089 | 2_2:+2516968 | None:intergenic |
| TTGTCAAGGACTTGAGTCAC+TGG | 0.509871 | 2_2:+2515775 | None:intergenic |
| AAAGTACACAAAACACATCA+TGG | 0.510201 | 2_2:-2516117 | Msa0230360:CDS |
| GCTCCAAGTGGAGGTGGTGG+TGG | 0.510318 | 2_2:+2516713 | None:intergenic |
| CCTCCACCGTCTCTAGGCTT+AGG | 0.510896 | 2_2:-2516836 | Msa0230360:CDS |
| ATGATGATATTGGACTTAGA+AGG | 0.511408 | 2_2:+2517245 | None:intergenic |
| AAGGCTAGAGACAGTGGCGG+CGG | 0.513519 | 2_2:+2516890 | None:intergenic |
| GCGCCACCACCACCTCCACT+TGG | 0.513755 | 2_2:-2516716 | Msa0230360:CDS |
| AAAAGAACAAACTATAGATA+AGG | 0.514437 | 2_2:-2517101 | Msa0230360:CDS |
| ACAAACTATAGATAAGGAAA+AGG | 0.515486 | 2_2:-2517095 | Msa0230360:CDS |
| CATGAAACCTGGATCATCTC+CGG | 0.522297 | 2_2:-2516783 | Msa0230360:CDS |
| CATCATCTACTTCAACACTT+TGG | 0.526376 | 2_2:-2517228 | Msa0230360:CDS |
| GAAGCTAGAAGCTATAAGAA+TGG | 0.527500 | 2_2:-2515863 | Msa0230360:CDS |
| TCATGAAAAGGAAACAATAG+AGG | 0.528783 | 2_2:-2517056 | Msa0230360:CDS |
| TCTTGTGTTTCAATCAATTG+TGG | 0.528894 | 2_2:+2517136 | None:intergenic |
| AAATCTGTATAGAACTCTCA+AGG | 0.532254 | 2_2:-2516633 | Msa0230360:CDS |
| TTTCCACGGAGCATTGGCGG+TGG | 0.535694 | 2_2:+2516749 | None:intergenic |
| TAAAGAGTCTTGGAGAGTCA+TGG | 0.535751 | 2_2:-2517582 | Msa0230360:CDS |
| GTAGAAGGGTCTAGCCTCAA+AGG | 0.535970 | 2_2:-2516605 | Msa0230360:CDS |
| GCTGGAGCCGGAGATGATCC+AGG | 0.537981 | 2_2:+2516776 | None:intergenic |
| GACAGTGGCGGCGGCAAAGG+TGG | 0.540110 | 2_2:+2516899 | None:intergenic |
| AAGCCTAGAGACGGTGGAGG+TGG | 0.540265 | 2_2:+2516839 | None:intergenic |
| TAGGTGTTATCAAGGTTTGA+AGG | 0.540380 | 2_2:-2515898 | Msa0230360:CDS |
| TATTACCAATTTCAAGACAA+AGG | 0.542324 | 2_2:-2516081 | Msa0230360:CDS |
| AGGTGGTGCTACTGAGCCTA+AGG | 0.543913 | 2_2:+2516871 | None:intergenic |
| GTAGATGGTTATCACTACCT+TGG | 0.544468 | 2_2:-2517965 | Msa0230360:intron |
| TGGTGGTAAGTTGCTTTGGA+GGG | 0.552312 | 2_2:-2515329 | Msa0230360:CDS |
| CACCACCTCCACTTGGAGCA+GGG | 0.554322 | 2_2:-2516709 | Msa0230360:CDS |
| TCCACCAAAGAAACCTTCAA+AGG | 0.561597 | 2_2:-2518225 | Msa0230360:CDS |
| CACTGGTGGAAAACAAGGAA+TGG | 0.561722 | 2_2:-2516540 | Msa0230360:CDS |
| GCGCAGATCCTCCGTTTCCA+CGG | 0.563300 | 2_2:+2516735 | None:intergenic |
| AAGCCTTTGTAGATCTTCCA+AGG | 0.563916 | 2_2:+2517948 | None:intergenic |
| AGACGGTGGAGGTGGTGATG+GGG | 0.564253 | 2_2:+2516847 | None:intergenic |
| GAAACTAACTGATGAATCAC+AGG | 0.577688 | 2_2:-2516009 | Msa0230360:intron |
| CTCTCAAGGGAAAAGTAGAA+GGG | 0.578588 | 2_2:-2516619 | Msa0230360:CDS |
| AGAAACACTGGTGGAAAACA+AGG | 0.579013 | 2_2:-2516545 | Msa0230360:CDS |
| CTCAAAGGAAAATCGTCTGG+TGG | 0.580657 | 2_2:-2516590 | Msa0230360:CDS |
| GGCAATTGATGTGTTGATGG+TGG | 0.583801 | 2_2:+2516953 | None:intergenic |
| GGATGTTTCCTCAAATTGCA+TGG | 0.583964 | 2_2:-2515503 | Msa0230360:CDS |
| ATCTACAAAGGCTTTACCCA+AGG | 0.588374 | 2_2:-2517939 | Msa0230360:CDS |
| AAGGAAGCAGAAGTGTTCAA+AGG | 0.591284 | 2_2:+2518083 | None:intergenic |
| AGGGTTTATACATTTGCTGG+TGG | 0.593056 | 2_2:-2515289 | Msa0230360:CDS |
| CCAGGTTTCATGGACAAGGA+TGG | 0.595220 | 2_2:+2516794 | None:intergenic |
| CACTTCTGCTTCCTTACGTG+AGG | 0.598553 | 2_2:-2518075 | Msa0230360:intron |
| TGTGTTGATGGTGGAAGTGG+AGG | 0.604118 | 2_2:+2516962 | None:intergenic |
| TCAATTGCCACAAAGTGAAG+TGG | 0.604274 | 2_2:-2516939 | Msa0230360:CDS |
| TCAAAGGAAAATCGTCTGGT+GGG | 0.608772 | 2_2:-2516589 | Msa0230360:CDS |
| GGTTTCATGGACAAGGATGG+TGG | 0.610612 | 2_2:+2516797 | None:intergenic |
| CAGAAGTGTTCAAAGGAGCA+AGG | 0.611060 | 2_2:+2518090 | None:intergenic |
| TTGGTGTTATCCTTGCATGA+TGG | 0.614287 | 2_2:+2517511 | None:intergenic |
| CCTCCACCGCCAATGCTCCG+TGG | 0.617199 | 2_2:-2516752 | Msa0230360:CDS |
| GGGTTTGGCATTCTTCTGTG+AGG | 0.617375 | 2_2:-2517608 | Msa0230360:CDS |
| TGATCCAGGTTTCATGGACA+AGG | 0.627277 | 2_2:+2516790 | None:intergenic |
| AATAACGTTCGATCTTGTCA+AGG | 0.627459 | 2_2:+2515761 | None:intergenic |
| GCAATTGGAGCAAGAAACAC+TGG | 0.629446 | 2_2:-2516557 | Msa0230360:CDS |
| GTTACAAATACCATCATGCA+AGG | 0.632250 | 2_2:-2517521 | Msa0230360:CDS |
| GATCTCCCTGCTCCAAGTGG+AGG | 0.641435 | 2_2:+2516704 | None:intergenic |
| ACTCACAAGAGAATTGGCTA+AGG | 0.642978 | 2_2:-2515245 | Msa0230360:CDS |
| TTCATGGACAAGGATGGTGG+AGG | 0.643480 | 2_2:+2516800 | None:intergenic |
| CCAATGCTCCGTGGAAACGG+AGG | 0.648433 | 2_2:-2516743 | Msa0230360:CDS |
| ATTGATCCTAAGCCTAGAGA+CGG | 0.651541 | 2_2:+2516830 | None:intergenic |
| AAAGATCTCCCTGCTCCAAG+TGG | 0.652536 | 2_2:+2516701 | None:intergenic |
| AATCTGTATAGAACTCTCAA+GGG | 0.653028 | 2_2:-2516632 | Msa0230360:CDS |
| CCTAAGCCTAGAGACGGTGG+AGG | 0.655178 | 2_2:+2516836 | None:intergenic |
| CTACCTTGGAAGATCTACAA+AGG | 0.659352 | 2_2:-2517951 | Msa0230360:CDS |
| GATCCTAAGCCTAGAGACGG+TGG | 0.667444 | 2_2:+2516833 | None:intergenic |
| ATTGGAGCAAGAAACACTGG+TGG | 0.680315 | 2_2:-2516554 | Msa0230360:CDS |
| GAGCCTAAGGCTAGAGACAG+TGG | 0.682667 | 2_2:+2516884 | None:intergenic |
| CCTAAGGCTAGAGACAGTGG+CGG | 0.692286 | 2_2:+2516887 | None:intergenic |
| TAAAGGGAGAGTCAATGGAG+TGG | 0.712480 | 2_2:-2518190 | Msa0230360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACATTCCTAATTTTAATT+AGG | + | chr2_2:2515612-2515631 | None:intergenic | 15.0% |
| !! | TTAAAATTAGGAATGTTATT+TGG | - | chr2_2:2515614-2515633 | Msa0230360:CDS | 15.0% |
| !!! | ACTTTTCATTTGTATTTTAA+AGG | - | chr2_2:2516978-2516997 | Msa0230360:CDS | 15.0% |
| !! | ATAGCATATATTAATATGAA+GGG | + | chr2_2:2517740-2517759 | None:intergenic | 15.0% |
| !! | TATAGCATATATTAATATGA+AGG | + | chr2_2:2517741-2517760 | None:intergenic | 15.0% |
| !! | CATACAAAAAAAAATACATT+TGG | - | chr2_2:2518002-2518021 | Msa0230360:intron | 15.0% |
| !!! | GTAATTTTTACTTTTCTTCA+TGG | - | chr2_2:2515402-2515421 | Msa0230360:intron | 20.0% |
| !! | TATATATGTCATATTGTAGA+TGG | - | chr2_2:2515475-2515494 | Msa0230360:intron | 20.0% |
| !! | CAAGAAATTGACAAATATTA+AGG | - | chr2_2:2515550-2515569 | Msa0230360:CDS | 20.0% |
| !! | TGTTACACCTAATTAAAATT+AGG | - | chr2_2:2515602-2515621 | Msa0230360:CDS | 20.0% |
| !! | TATTTGGACAATAAAACTAT+TGG | - | chr2_2:2515630-2515649 | Msa0230360:intron | 20.0% |
| !! | AAGTGAAAAATTTGATATCA+TGG | - | chr2_2:2516111-2516130 | Msa0230360:CDS | 20.0% |
| !! | AAAAGAACAAACTATAGATA+AGG | - | chr2_2:2516354-2516373 | Msa0230360:intron | 20.0% |
| !! | TATAAGTTGCTTACAAAAAT+TGG | + | chr2_2:2517093-2517112 | None:intergenic | 20.0% |
| !! | TCAAAAATAAGAAATAGAGA+GGG | + | chr2_2:2517258-2517277 | None:intergenic | 20.0% |
| !! | ATCAAAAATAAGAAATAGAG+AGG | + | chr2_2:2517259-2517278 | None:intergenic | 20.0% |
| !!! | TTTCTTATTTTTGATTTCCT+TGG | - | chr2_2:2517264-2517283 | Msa0230360:CDS | 20.0% |
| !! | TATTATACAATTCTGTTCAT+AGG | - | chr2_2:2517538-2517557 | Msa0230360:CDS | 20.0% |
| !! | ACGATTAAATAAATTTATGC+AGG | + | chr2_2:2517785-2517804 | None:intergenic | 20.0% |
| !! | TGAAGAATTGAAAAAATTCA+AGG | - | chr2_2:2517874-2517893 | Msa0230360:intron | 20.0% |
| !! | GAAGAATTGAAAAAATTCAA+GGG | - | chr2_2:2517875-2517894 | Msa0230360:intron | 20.0% |
| !!! | TTGCTTCTTTAATTTTTACA+AGG | + | chr2_2:2517928-2517947 | None:intergenic | 20.0% |
| !! | TGTAAAAATTAAAGAAGCAA+TGG | - | chr2_2:2517928-2517947 | Msa0230360:CDS | 20.0% |
| !! | ACATTTGGTTAATATTCATT+AGG | - | chr2_2:2518017-2518036 | Msa0230360:intron | 20.0% |
| !! | TTTGCATTTAAATATAATGC+AGG | - | chr2_2:2518060-2518079 | Msa0230360:intron | 20.0% |
| !! | TGAAGACAAAGATTTTCTTA+TGG | + | chr2_2:2515332-2515351 | None:intergenic | 25.0% |
| ! | AATGTAGACAGTATTTCATT+AGG | - | chr2_2:2515826-2515845 | Msa0230360:CDS | 25.0% |
| ! | ATGTAGACAGTATTTCATTA+GGG | - | chr2_2:2515827-2515846 | Msa0230360:CDS | 25.0% |
| ! | ATCTGATTAATTCTTTGACA+AGG | + | chr2_2:2516012-2516031 | None:intergenic | 25.0% |
| !!! | TAACATTTGAATTGTTTTGC+AGG | - | chr2_2:2516046-2516065 | Msa0230360:CDS | 25.0% |
| ! | ACAAACTATAGATAAGGAAA+AGG | - | chr2_2:2516360-2516379 | Msa0230360:intron | 25.0% |
| ! | CAAAGTTGTAAATCATGAAA+AGG | - | chr2_2:2516387-2516406 | Msa0230360:intron | 25.0% |
| !!! | AACGCTTAATTTTAAGATGT+TGG | - | chr2_2:2517188-2517207 | Msa0230360:CDS | 25.0% |
| ! | ATTTGATTCAACTTAGACAT+GGG | + | chr2_2:2517225-2517244 | None:intergenic | 25.0% |
| ! | CAAAAATAAGAAATAGAGAG+GGG | + | chr2_2:2517257-2517276 | None:intergenic | 25.0% |
| ! | TATTACCAATTTCAAGACAA+AGG | - | chr2_2:2517374-2517393 | Msa0230360:CDS | 25.0% |
| ! | AAAAATTAAAGAAGCAATGG+TGG | - | chr2_2:2517931-2517950 | Msa0230360:CDS | 25.0% |
| ! | TATAAACCCTAAATGCAAAT+TGG | + | chr2_2:2518156-2518175 | None:intergenic | 25.0% |
| ! | TAAACCTTTGAAGGTTTCTT+TGG | + | chr2_2:2515237-2515256 | None:intergenic | 30.0% |
| AAAGGTTTACAGTGATGTAA+AGG | - | chr2_2:2515248-2515267 | Msa0230360:CDS | 30.0% | |
| AAGGTTTACAGTGATGTAAA+GGG | - | chr2_2:2515249-2515268 | Msa0230360:CDS | 30.0% | |
| AGTAAAAATTACCTCACGTA+AGG | + | chr2_2:2515394-2515413 | None:intergenic | 30.0% | |
| GAAAGACAATGTTATAAACG+AGG | + | chr2_2:2515451-2515470 | None:intergenic | 30.0% | |
| AAGATTGAAACCTGATCTAT+GGG | + | chr2_2:2515581-2515600 | None:intergenic | 30.0% | |
| AAAGATTGAAACCTGATCTA+TGG | + | chr2_2:2515582-2515601 | None:intergenic | 30.0% | |
| AAAAATACACCGCTTATAAC+CGG | + | chr2_2:2515707-2515726 | None:intergenic | 30.0% | |
| !! | TAAGCGGTGTATTTTTATAC+AGG | - | chr2_2:2515711-2515730 | Msa0230360:intron | 30.0% |
| !! | AAGCGGTGTATTTTTATACA+GGG | - | chr2_2:2515712-2515731 | Msa0230360:intron | 30.0% |
| ACCATCCTAATGATGATTAT+TGG | - | chr2_2:2515788-2515807 | Msa0230360:CDS | 30.0% | |
| ACCAATAATCATCATTAGGA+TGG | + | chr2_2:2515792-2515811 | None:intergenic | 30.0% | |
| GGATACCAATAATCATCATT+AGG | + | chr2_2:2515796-2515815 | None:intergenic | 30.0% | |
| ! | CTGTCTACATTTAGCATTTT+GGG | + | chr2_2:2515817-2515836 | None:intergenic | 30.0% |
| ! | ACTGTCTACATTTAGCATTT+TGG | + | chr2_2:2515818-2515837 | None:intergenic | 30.0% |
| AACACCAATATGCAACAATT+AGG | - | chr2_2:2515959-2515978 | Msa0230360:intron | 30.0% | |
| CATACCTAATTGTTGCATAT+TGG | + | chr2_2:2515966-2515985 | None:intergenic | 30.0% | |
| AGATGTGATATCTGAATTGT+AGG | + | chr2_2:2516167-2516186 | None:intergenic | 30.0% | |
| ATGATGATATTGGACTTAGA+AGG | + | chr2_2:2516213-2516232 | None:intergenic | 30.0% | |
| GTTGAAGTAGATGATGATAT+TGG | + | chr2_2:2516223-2516242 | None:intergenic | 30.0% | |
| ! | GATAAGCGCTTTAAATCAAT+CGG | + | chr2_2:2516286-2516305 | None:intergenic | 30.0% |
| TCTTGTGTTTCAATCAATTG+TGG | + | chr2_2:2516322-2516341 | None:intergenic | 30.0% | |
| TCATGAAAAGGAAACAATAG+AGG | - | chr2_2:2516399-2516418 | Msa0230360:intron | 30.0% | |
| CTTAAACACAGTTGAGAAAT+TGG | - | chr2_2:2516435-2516454 | Msa0230360:intron | 30.0% | |
| CTGAAAAGATCAACACAATT+AGG | - | chr2_2:2516799-2516818 | Msa0230360:CDS | 30.0% | |
| AAATCTGTATAGAACTCTCA+AGG | - | chr2_2:2516822-2516841 | Msa0230360:CDS | 30.0% | |
| AATCTGTATAGAACTCTCAA+GGG | - | chr2_2:2516823-2516842 | Msa0230360:CDS | 30.0% | |
| GCTTATTTGAACTTATCTAC+CGG | - | chr2_2:2517000-2517019 | Msa0230360:CDS | 30.0% | |
| CATTTGATTCAACTTAGACA+TGG | + | chr2_2:2517226-2517245 | None:intergenic | 30.0% | |
| ATCTAGTAAAACACAAACCA+AGG | + | chr2_2:2517284-2517303 | None:intergenic | 30.0% | |
| AAAGTACACAAAACACATCA+TGG | - | chr2_2:2517338-2517357 | Msa0230360:CDS | 30.0% | |
| CATTTCCTTTGTCTTGAAAT+TGG | + | chr2_2:2517382-2517401 | None:intergenic | 30.0% | |
| ! | GATCGAACGTTATTTCAATA+AGG | - | chr2_2:2517703-2517722 | Msa0230360:intron | 30.0% |
| CAAAACAGAATTAGATGCTT+TGG | - | chr2_2:2517838-2517857 | Msa0230360:intron | 30.0% | |
| CGCATTAATAATAGTAGTGA+TGG | - | chr2_2:2518088-2518107 | Msa0230360:CDS | 30.0% | |
| GATGGAAAAAGAAAAGAATG+TGG | - | chr2_2:2518106-2518125 | Msa0230360:CDS | 30.0% | |
| ! | TTTAGGGTTTATACATTTGC+TGG | - | chr2_2:2518163-2518182 | Msa0230360:CDS | 30.0% |
| ACATCACTGTAAACCTTTGA+AGG | + | chr2_2:2515246-2515265 | None:intergenic | 35.0% | |
| TCAATGGAGTGGTCATTTAT+AGG | - | chr2_2:2515276-2515295 | Msa0230360:CDS | 35.0% | |
| TCTTGATTGAGATGATCCTT+GGG | + | chr2_2:2515535-2515554 | None:intergenic | 35.0% | |
| TTCTTGATTGAGATGATCCT+TGG | + | chr2_2:2515536-2515555 | None:intergenic | 35.0% | |
| TCAATTACATCAACAGTTGC+CGG | - | chr2_2:2515685-2515704 | Msa0230360:intron | 35.0% | |
| GACAGTATTTCATTAGGGTT+TGG | - | chr2_2:2515832-2515851 | Msa0230360:CDS | 35.0% | |
| GTTACAAATACCATCATGCA+AGG | - | chr2_2:2515934-2515953 | Msa0230360:intron | 35.0% | |
| ! | TTTTGCAGGTGAAACTATGT+TGG | - | chr2_2:2516060-2516079 | Msa0230360:CDS | 35.0% |
| TAGGAGTTGCAAACTTTCTT+TGG | + | chr2_2:2516148-2516167 | None:intergenic | 35.0% | |
| CATCATCTACTTCAACACTT+TGG | - | chr2_2:2516227-2516246 | Msa0230360:intron | 35.0% | |
| ! | TCTCTAAGAATTCAAGCTCT+TGG | - | chr2_2:2516250-2516269 | Msa0230360:intron | 35.0% |
| !! | TTCAGTTTTGTAGTTGCTCT+AGG | + | chr2_2:2516784-2516803 | None:intergenic | 35.0% |
| ! | TTTAAGATGTTGGTCCAAAC+AGG | - | chr2_2:2517198-2517217 | Msa0230360:CDS | 35.0% |
| TTAAGATGTTGGTCCAAACA+GGG | - | chr2_2:2517199-2517218 | Msa0230360:CDS | 35.0% | |
| GAAGAGATTCAACATCTTTG+TGG | + | chr2_2:2517422-2517441 | None:intergenic | 35.0% | |
| GAAACTAACTGATGAATCAC+AGG | - | chr2_2:2517446-2517465 | Msa0230360:intron | 35.0% | |
| ! | TCTGTTCATAGGTGTTATCA+AGG | - | chr2_2:2517549-2517568 | Msa0230360:CDS | 35.0% |
| ! | TAGGTGTTATCAAGGTTTGA+AGG | - | chr2_2:2517557-2517576 | Msa0230360:CDS | 35.0% |
| !! | TAGCTTCTAGCTTCTTTGAT+GGG | + | chr2_2:2517586-2517605 | None:intergenic | 35.0% |
| !! | ATAGCTTCTAGCTTCTTTGA+TGG | + | chr2_2:2517587-2517606 | None:intergenic | 35.0% |
| GAAGCTAGAAGCTATAAGAA+TGG | - | chr2_2:2517592-2517611 | Msa0230360:CDS | 35.0% | |
| AATAACGTTCGATCTTGTCA+AGG | + | chr2_2:2517697-2517716 | None:intergenic | 35.0% | |
| AGAAGTCGAATTCGATGTTA+TGG | + | chr2_2:2517901-2517920 | None:intergenic | 35.0% | |
| GGAAAAAGAAAAGAATGTGG+TGG | - | chr2_2:2518109-2518128 | Msa0230360:CDS | 35.0% | |
| GGCTTTCCAATTTGCATTTA+GGG | - | chr2_2:2518147-2518166 | Msa0230360:CDS | 35.0% | |
| TGACAAACTCACAAGAGAAT+TGG | - | chr2_2:2518204-2518223 | Msa0230360:CDS | 35.0% | |
| TCCACCAAAGAAACCTTCAA+AGG | - | chr2_2:2515230-2515249 | Msa0230360:CDS | 40.0% | |
| ! | ACCTTTGAAGGTTTCTTTGG+TGG | + | chr2_2:2515234-2515253 | None:intergenic | 40.0% |
| TGATGTAAAGGGAGAGTCAA+TGG | - | chr2_2:2515260-2515279 | Msa0230360:CDS | 40.0% | |
| GGAGTGGTCATTTATAGGTA+TGG | - | chr2_2:2515281-2515300 | Msa0230360:CDS | 40.0% | |
| CTTTGTCTTCAGAGACATCA+TGG | - | chr2_2:2515341-2515360 | Msa0230360:CDS | 40.0% | |
| !! | AAGGAAGCAGAAGTGTTCAA+AGG | + | chr2_2:2515375-2515394 | None:intergenic | 40.0% |
| GTAGATGGTTATCACTACCT+TGG | - | chr2_2:2515490-2515509 | Msa0230360:CDS | 40.0% | |
| CTACCTTGGAAGATCTACAA+AGG | - | chr2_2:2515504-2515523 | Msa0230360:CDS | 40.0% | |
| AAGCCTTTGTAGATCTTCCA+AGG | + | chr2_2:2515510-2515529 | None:intergenic | 40.0% | |
| ATCTACAAAGGCTTTACCCA+AGG | - | chr2_2:2515516-2515535 | Msa0230360:CDS | 40.0% | |
| !! | TGTGAGGCTTTAAAGAGTCT+TGG | - | chr2_2:2515863-2515882 | Msa0230360:CDS | 40.0% |
| TAAAGAGTCTTGGAGAGTCA+TGG | - | chr2_2:2515873-2515892 | Msa0230360:CDS | 40.0% | |
| !! | TTGGTGTTATCCTTGCATGA+TGG | + | chr2_2:2515947-2515966 | None:intergenic | 40.0% |
| !!! | AGGACAGATTTTGGTGTTAG+AGG | + | chr2_2:2516193-2516212 | None:intergenic | 40.0% |
| ! | GGACTTAGAAGGACAGATTT+TGG | + | chr2_2:2516202-2516221 | None:intergenic | 40.0% |
| TGTGGCAATTGATGTGTTGA+TGG | + | chr2_2:2516508-2516527 | None:intergenic | 40.0% | |
| TCAATTGCCACAAAGTGAAG+TGG | - | chr2_2:2516516-2516535 | Msa0230360:CDS | 40.0% | |
| ! | TTAACTGCCACTTCACTTTG+TGG | + | chr2_2:2516526-2516545 | None:intergenic | 40.0% |
| ATTGATCCTAAGCCTAGAGA+CGG | + | chr2_2:2516628-2516647 | None:intergenic | 40.0% | |
| ACTCTCAAGGGAAAAGTAGA+AGG | - | chr2_2:2516835-2516854 | Msa0230360:CDS | 40.0% | |
| CTCTCAAGGGAAAAGTAGAA+GGG | - | chr2_2:2516836-2516855 | Msa0230360:CDS | 40.0% | |
| TCAAAGGAAAATCGTCTGGT+GGG | - | chr2_2:2516866-2516885 | Msa0230360:CDS | 40.0% | |
| AGAAACACTGGTGGAAAACA+AGG | - | chr2_2:2516910-2516929 | Msa0230360:CDS | 40.0% | |
| CTCTAGCAGAGATGACAAAA+AGG | - | chr2_2:2516944-2516963 | Msa0230360:CDS | 40.0% | |
| AGGGTCATCATTGTTTGTAC+CGG | + | chr2_2:2517022-2517041 | None:intergenic | 40.0% | |
| GTACAAACAATGATGACCCT+GGG | - | chr2_2:2517022-2517041 | Msa0230360:CDS | 40.0% | |
| AGCAGCACTCTTCAACAAAT+TGG | - | chr2_2:2517616-2517635 | Msa0230360:intron | 40.0% | |
| GGATGTTTCCTCAAATTGCA+TGG | - | chr2_2:2517952-2517971 | Msa0230360:CDS | 40.0% | |
| TGCTAACTCCATGCAATTTG+AGG | + | chr2_2:2517963-2517982 | None:intergenic | 40.0% | |
| TTGCATGGAGTTAGCACTTA+AGG | - | chr2_2:2517967-2517986 | Msa0230360:intron | 40.0% | |
| AATGTGGTGGTAAGTTGCTT+TGG | - | chr2_2:2518122-2518141 | Msa0230360:CDS | 40.0% | |
| GGGCTTTCCAATTTGCATTT+AGG | - | chr2_2:2518146-2518165 | Msa0230360:CDS | 40.0% | |
| ! | AGGGTTTATACATTTGCTGG+TGG | - | chr2_2:2518166-2518185 | Msa0230360:CDS | 40.0% |
| ACTCACAAGAGAATTGGCTA+AGG | - | chr2_2:2518210-2518229 | Msa0230360:CDS | 40.0% | |
| TAAAGGGAGAGTCAATGGAG+TGG | - | chr2_2:2515265-2515284 | Msa0230360:CDS | 45.0% | |
| !! | CAGAAGTGTTCAAAGGAGCA+AGG | + | chr2_2:2515368-2515387 | None:intergenic | 45.0% |
| TAAGGACAAGCCCATAGATC+AGG | - | chr2_2:2515568-2515587 | Msa0230360:CDS | 45.0% | |
| ! | CAACAGTTGCCGGTTATAAG+CGG | - | chr2_2:2515695-2515714 | Msa0230360:intron | 45.0% |
| !! | TGATGTGTTGATGGTGGAAG+TGG | + | chr2_2:2516499-2516518 | None:intergenic | 45.0% |
| ! | GGCAATTGATGTGTTGATGG+TGG | + | chr2_2:2516505-2516524 | None:intergenic | 45.0% |
| TGATCCAGGTTTCATGGACA+AGG | + | chr2_2:2516668-2516687 | None:intergenic | 45.0% | |
| CATGAAACCTGGATCATCTC+CGG | - | chr2_2:2516672-2516691 | Msa0230360:CDS | 45.0% | |
| TTGGAGCAGGGAGATCTTTA+AGG | - | chr2_2:2516758-2516777 | Msa0230360:CDS | 45.0% | |
| AGCCTCAAAGGAAAATCGTC+TGG | - | chr2_2:2516862-2516881 | Msa0230360:CDS | 45.0% | |
| ! | CACCAGACGATTTTCCTTTG+AGG | + | chr2_2:2516867-2516886 | None:intergenic | 45.0% |
| CTCAAAGGAAAATCGTCTGG+TGG | - | chr2_2:2516865-2516884 | Msa0230360:CDS | 45.0% | |
| GCAATTGGAGCAAGAAACAC+TGG | - | chr2_2:2516898-2516917 | Msa0230360:CDS | 45.0% | |
| ATTGGAGCAAGAAACACTGG+TGG | - | chr2_2:2516901-2516920 | Msa0230360:CDS | 45.0% | |
| CACTGGTGGAAAACAAGGAA+TGG | - | chr2_2:2516915-2516934 | Msa0230360:CDS | 45.0% | |
| GGTACAAACAATGATGACCC+TGG | - | chr2_2:2517021-2517040 | Msa0230360:CDS | 45.0% | |
| TTGTCAAGGACTTGAGTCAC+TGG | + | chr2_2:2517683-2517702 | None:intergenic | 45.0% | |
| ! | TGGTGGTAAGTTGCTTTGGA+GGG | - | chr2_2:2518126-2518145 | Msa0230360:CDS | 45.0% |
| CACTTCTGCTTCCTTACGTG+AGG | - | chr2_2:2515380-2515399 | Msa0230360:intron | 50.0% | |
| GGGTTTGGCATTCTTCTGTG+AGG | - | chr2_2:2515847-2515866 | Msa0230360:CDS | 50.0% | |
| !! | TGTGTTGATGGTGGAAGTGG+AGG | + | chr2_2:2516496-2516515 | None:intergenic | 50.0% |
| !! | GACAAGGATGGTGGAGGTAT+TGG | + | chr2_2:2516652-2516671 | None:intergenic | 50.0% |
| ! | TTCATGGACAAGGATGGTGG+AGG | + | chr2_2:2516658-2516677 | None:intergenic | 50.0% |
| GGTTTCATGGACAAGGATGG+TGG | + | chr2_2:2516661-2516680 | None:intergenic | 50.0% | |
| CCAGGTTTCATGGACAAGGA+TGG | + | chr2_2:2516664-2516683 | None:intergenic | 50.0% | |
| CCATCCTTGTCCATGAAACC+TGG | - | chr2_2:2516661-2516680 | Msa0230360:CDS | 50.0% | |
| CGGAGATGATCCAGGTTTCA+TGG | + | chr2_2:2516674-2516693 | None:intergenic | 50.0% | |
| AAAGATCTCCCTGCTCCAAG+TGG | + | chr2_2:2516757-2516776 | None:intergenic | 50.0% | |
| GTAGAAGGGTCTAGCCTCAA+AGG | - | chr2_2:2516850-2516869 | Msa0230360:CDS | 50.0% | |
| GGTGGGAGAAACACTGCAAT+TGG | - | chr2_2:2516883-2516902 | Msa0230360:CDS | 50.0% | |
| ACTTAGACATGGGCCCTGTT+TGG | + | chr2_2:2517215-2517234 | None:intergenic | 50.0% | |
| ! | GTGGTGGTAAGTTGCTTTGG+AGG | - | chr2_2:2518125-2518144 | Msa0230360:CDS | 50.0% |
| !! | GTTGATGGTGGAAGTGGAGG+AGG | + | chr2_2:2516493-2516512 | None:intergenic | 55.0% |
| CCTAAGGCTAGAGACAGTGG+CGG | + | chr2_2:2516571-2516590 | None:intergenic | 55.0% | |
| GAGCCTAAGGCTAGAGACAG+TGG | + | chr2_2:2516574-2516593 | None:intergenic | 55.0% | |
| !! | AGGTGGTGCTACTGAGCCTA+AGG | + | chr2_2:2516587-2516606 | None:intergenic | 55.0% |
| GATCCTAAGCCTAGAGACGG+TGG | + | chr2_2:2516625-2516644 | None:intergenic | 55.0% | |
| AACAATGATGACCCTGGGCG+CGG | - | chr2_2:2517027-2517046 | Msa0230360:CDS | 55.0% | |
| !! | GATGGTGGAAGTGGAGGAGG+AGG | + | chr2_2:2516490-2516509 | None:intergenic | 60.0% |
| AAGGCTAGAGACAGTGGCGG+CGG | + | chr2_2:2516568-2516587 | None:intergenic | 60.0% | |
| ! | CCGCCACTGTCTCTAGCCTT+AGG | - | chr2_2:2516568-2516587 | Msa0230360:CDS | 60.0% |
| ! | AGACGGTGGAGGTGGTGATG+GGG | + | chr2_2:2516611-2516630 | None:intergenic | 60.0% |
| GAGACGGTGGAGGTGGTGAT+GGG | + | chr2_2:2516612-2516631 | None:intergenic | 60.0% | |
| AGAGACGGTGGAGGTGGTGA+TGG | + | chr2_2:2516613-2516632 | None:intergenic | 60.0% | |
| TCACCACCTCCACCGTCTCT+AGG | - | chr2_2:2516613-2516632 | Msa0230360:CDS | 60.0% | |
| AAGCCTAGAGACGGTGGAGG+TGG | + | chr2_2:2516619-2516638 | None:intergenic | 60.0% | |
| CCTAAGCCTAGAGACGGTGG+AGG | + | chr2_2:2516622-2516641 | None:intergenic | 60.0% | |
| CCTCCACCGTCTCTAGGCTT+AGG | - | chr2_2:2516619-2516638 | Msa0230360:CDS | 60.0% | |
| !! | TTTCCACGGAGCATTGGCGG+TGG | + | chr2_2:2516709-2516728 | None:intergenic | 60.0% |
| !! | CCGTTTCCACGGAGCATTGG+CGG | + | chr2_2:2516712-2516731 | None:intergenic | 60.0% |
| CCGCCAATGCTCCGTGGAAA+CGG | - | chr2_2:2516709-2516728 | Msa0230360:CDS | 60.0% | |
| CCTCCGTTTCCACGGAGCAT+TGG | + | chr2_2:2516715-2516734 | None:intergenic | 60.0% | |
| CCAATGCTCCGTGGAAACGG+AGG | - | chr2_2:2516712-2516731 | Msa0230360:CDS | 60.0% | |
| GCGCAGATCCTCCGTTTCCA+CGG | + | chr2_2:2516723-2516742 | None:intergenic | 60.0% | |
| CACCACCTCCACTTGGAGCA+GGG | - | chr2_2:2516746-2516765 | Msa0230360:CDS | 60.0% | |
| GATCTCCCTGCTCCAAGTGG+AGG | + | chr2_2:2516754-2516773 | None:intergenic | 60.0% | |
| ACAATGATGACCCTGGGCGC+GGG | - | chr2_2:2517028-2517047 | Msa0230360:CDS | 60.0% | |
| GGAAGTGGAGGAGGAGGTGG+TGG | + | chr2_2:2516484-2516503 | None:intergenic | 65.0% | |
| GGTGGAAGTGGAGGAGGAGG+TGG | + | chr2_2:2516487-2516506 | None:intergenic | 65.0% | |
| AGAGACAGTGGCGGCGGCAA+AGG | + | chr2_2:2516562-2516581 | None:intergenic | 65.0% | |
| !! | GACGGTGGAGGTGGTGATGG+GGG | + | chr2_2:2516610-2516629 | None:intergenic | 65.0% |
| GCTGGAGCCGGAGATGATCC+AGG | + | chr2_2:2516682-2516701 | None:intergenic | 65.0% | |
| !! | AGCATTGGCGGTGGAGGAGC+TGG | + | chr2_2:2516700-2516719 | None:intergenic | 65.0% |
| ! | GCTCCAAGTGGAGGTGGTGG+TGG | + | chr2_2:2516745-2516764 | None:intergenic | 65.0% |
| CCTGCTCCAAGTGGAGGTGG+TGG | + | chr2_2:2516748-2516767 | None:intergenic | 65.0% | |
| CCACCACCTCCACTTGGAGC+AGG | - | chr2_2:2516745-2516764 | Msa0230360:CDS | 65.0% | |
| CTCCCTGCTCCAAGTGGAGG+TGG | + | chr2_2:2516751-2516770 | None:intergenic | 65.0% | |
| ! | GGAGGAGGAGGTGGTGGCAG+CGG | + | chr2_2:2516478-2516497 | None:intergenic | 70.0% |
| AGTGGCGGCGGCAAAGGTGG+TGG | + | chr2_2:2516556-2516575 | None:intergenic | 70.0% | |
| GACAGTGGCGGCGGCAAAGG+TGG | + | chr2_2:2516559-2516578 | None:intergenic | 70.0% | |
| !! | GGAGGTGGTGATGGGGGAGG+TGG | + | chr2_2:2516604-2516623 | None:intergenic | 70.0% |
| !! | GGTGGAGGTGGTGATGGGGG+AGG | + | chr2_2:2516607-2516626 | None:intergenic | 70.0% |
| !! | CCACGGAGCATTGGCGGTGG+AGG | + | chr2_2:2516706-2516725 | None:intergenic | 70.0% |
| CCTCCACCGCCAATGCTCCG+TGG | - | chr2_2:2516703-2516722 | Msa0230360:CDS | 70.0% | |
| GCGCCACCACCACCTCCACT+TGG | - | chr2_2:2516739-2516758 | Msa0230360:CDS | 70.0% | |
| ATGATGACCCTGGGCGCGGG+TGG | - | chr2_2:2517031-2517050 | Msa0230360:CDS | 70.0% | |
| ! | GGAGGTGGTGGCAGCGGCAG+CGG | + | chr2_2:2516472-2516491 | None:intergenic | 75.0% |
| ! | GGCGGCGGCAAAGGTGGTGG+TGG | + | chr2_2:2516553-2516572 | None:intergenic | 75.0% |
| GGCGGTGGAGGAGCTGGAGC+CGG | + | chr2_2:2516694-2516713 | None:intergenic | 75.0% | |
| TGACCCTGGGCGCGGGTGGT+AGG | - | chr2_2:2517035-2517054 | Msa0230360:CDS | 75.0% | |
| GACCCTGGGCGCGGGTGGTA+GGG | - | chr2_2:2517036-2517055 | Msa0230360:CDS | 75.0% | |
| ACCCTGGGCGCGGGTGGTAG+GGG | - | chr2_2:2517037-2517056 | Msa0230360:CDS | 75.0% | |
| ! | GCCCCTACCACCCGCGCCCA+GGG | + | chr2_2:2517041-2517060 | None:intergenic | 80.0% |
| ! | CGCCCCTACCACCCGCGCCC+AGG | + | chr2_2:2517042-2517061 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 2515216 | 2518261 | 2515216 | ID=Msa0230360;Name=Msa0230360 |
| chr2_2 | mRNA | 2515216 | 2518261 | 2515216 | ID=Msa0230360-mRNA-1;Parent=Msa0230360;Name=Msa0230360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|8|0|658 |
| chr2_2 | exon | 2518076 | 2518261 | 2518076 | ID=Msa0230360-mRNA-1:exon:861;Parent=Msa0230360-mRNA-1 |
| chr2_2 | exon | 2517888 | 2517983 | 2517888 | ID=Msa0230360-mRNA-1:exon:860;Parent=Msa0230360-mRNA-1 |
| chr2_2 | exon | 2517497 | 2517629 | 2517497 | ID=Msa0230360-mRNA-1:exon:859;Parent=Msa0230360-mRNA-1 |
| chr2_2 | exon | 2516512 | 2517409 | 2516512 | ID=Msa0230360-mRNA-1:exon:858;Parent=Msa0230360-mRNA-1 |
| chr2_2 | exon | 2516010 | 2516175 | 2516010 | ID=Msa0230360-mRNA-1:exon:857;Parent=Msa0230360-mRNA-1 |
| chr2_2 | exon | 2515753 | 2515917 | 2515753 | ID=Msa0230360-mRNA-1:exon:856;Parent=Msa0230360-mRNA-1 |
| chr2_2 | exon | 2515489 | 2515641 | 2515489 | ID=Msa0230360-mRNA-1:exon:855;Parent=Msa0230360-mRNA-1 |
| chr2_2 | exon | 2515216 | 2515395 | 2515216 | ID=Msa0230360-mRNA-1:exon:854;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2518076 | 2518261 | 2518076 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2517888 | 2517983 | 2517888 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2517497 | 2517629 | 2517497 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2516512 | 2517409 | 2516512 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2516010 | 2516175 | 2516010 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2515753 | 2515917 | 2515753 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2515489 | 2515641 | 2515489 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| chr2_2 | CDS | 2515216 | 2515395 | 2515216 | ID=Msa0230360-mRNA-1:cds;Parent=Msa0230360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
