AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0998660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998660 MtrunA17_Chr6g0484641 93.103 174 9 2 1 174 1 171 1.41e-104 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998660 AT1G73885.1 38.378 185 96 8 1 173 1 179 5.59e-27 100

Find 74 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTAGATTGTAATTTA+TGG 0.123274 6_4:-79847972 None:intergenic
TGAAATTTAGAGTTGATATT+TGG 0.189417 6_4:+79848340 Msa0998660:three_prime_UTR
TTGGATTCAAATGTTGAATA+TGG 0.194234 6_4:+79848359 Msa0998660:three_prime_UTR
TATACACTTTAGGCCTTGTT+TGG 0.281238 6_4:+79848520 Msa0998660:three_prime_UTR
GGAGAATGGTTGTGGATTCT+TGG 0.288850 6_4:+79846051 Msa0998660:CDS
GGTATGTTTGCTTGTATCTA+TGG 0.292996 6_4:-79848126 None:intergenic
AAAGAGCCTGATTTCTTTGA+AGG 0.327839 6_4:+79846000 Msa0998660:CDS
TGATTCACTTAAGTTATGTT+TGG 0.348540 6_4:+79848468 Msa0998660:three_prime_UTR
TCTACCAACATATACACTTT+AGG 0.348982 6_4:+79848510 Msa0998660:three_prime_UTR
CTTATTGCACTCAATTTGTA+AGG 0.365549 6_4:+79848191 Msa0998660:three_prime_UTR
CAACAGTGGTTGTTGGTTGT+TGG 0.374252 6_4:-79845888 None:intergenic
TGGAATACTGTTGGGTTTGT+TGG 0.381813 6_4:+79846030 Msa0998660:CDS
ATGTCCGATTCAGATGTTTC+AGG 0.388886 6_4:-79848055 None:intergenic
AATATGGATAGTGGTTTGTA+TGG 0.398965 6_4:+79848375 Msa0998660:three_prime_UTR
GAAAGTGATGATGATGTTGT+AGG 0.403013 6_4:-79845688 None:intergenic
CAAATGTTGAATATGGATAG+TGG 0.416010 6_4:+79848366 Msa0998660:three_prime_UTR
GGTATTTCAACTTCATTCCT+TGG 0.418384 6_4:-79845925 None:intergenic
TCCTCATCAACAGTGGTTGT+TGG 0.422081 6_4:-79845895 None:intergenic
ATATCAACTCTAAATTTCAA+TGG 0.429258 6_4:-79848336 None:intergenic
AGGTGGTGGTAGGAGGGTGT+AGG 0.431318 6_4:-79845800 None:intergenic
GCAGCCATAAATTACAATCT+AGG 0.431465 6_4:+79847968 Msa0998660:CDS
GCTACGGTGAATGCCATTAG+AGG 0.436737 6_4:-79845727 None:intergenic
ACAAACAATAACTATGTTTG+AGG 0.440210 6_4:-79845638 None:intergenic
ATACACTTTAGGCCTTGTTT+GGG 0.443269 6_4:+79848521 Msa0998660:three_prime_UTR
TGAGGACCTTCAAAGAAATC+AGG 0.443462 6_4:-79846006 None:intergenic
TGATTGCAGGTACTCGGTGG+TGG 0.443641 6_4:+79847941 Msa0998660:intron
AGGAAGTAGTAACCTTTGTA+TGG 0.444494 6_4:-79845668 None:intergenic
GGTTTGTTGGAGAATGGTTG+TGG 0.447045 6_4:+79846043 Msa0998660:CDS
CTACTCTTTACACCCTCTAA+TGG 0.448029 6_4:+79845714 Msa0998660:exon
GGTGGTGGTAGGAGGGTGTA+GGG 0.448255 6_4:-79845799 None:intergenic
TAAGGAAACTCCTGCATACA+AGG 0.456201 6_4:+79848003 Msa0998660:CDS
CTGTTGGGTTTGTTGGAGAA+TGG 0.461075 6_4:+79846037 Msa0998660:CDS
GGTGTAGGGTGTTGTTGTGG+TGG 0.465718 6_4:-79845785 None:intergenic
GAGGGTGTAGGGTGTTGTTG+TGG 0.482266 6_4:-79845788 None:intergenic
GTCCTCAGTGGAATACTGTT+GGG 0.482795 6_4:+79846022 Msa0998660:CDS
ACAACCTGAAACATCTGAAT+CGG 0.485907 6_4:+79848051 Msa0998660:CDS
TTGTGGTGGTCTTGTTGTAG+AGG 0.490468 6_4:-79845771 None:intergenic
AGAAGAAGGTGGTGGTAGGA+GGG 0.491684 6_4:-79845806 None:intergenic
TGTTTGCTTGTATCTATGGA+TGG 0.492165 6_4:-79848122 None:intergenic
GTAGCTACATGCGGTGGTGC+AGG 0.492658 6_4:+79845745 Msa0998660:CDS
AGGAGCTACCTCTGTAGGAT+TGG 0.496936 6_4:-79848086 None:intergenic
GACTGAGATTCCTTGTATGC+AGG 0.497420 6_4:-79848013 None:intergenic
TAGAAGAAGGTGGTGGTAGG+AGG 0.510050 6_4:-79845807 None:intergenic
AGTGTTCTTCTTCTAGAAGA+AGG 0.513631 6_4:-79845820 None:intergenic
CCAGGAGGTCTCCATTCAAA+AGG 0.515241 6_4:-79845970 None:intergenic
AGATTTCTTCACGTTCAAGA+AGG 0.538426 6_4:+79845863 Msa0998660:CDS
GGTCCTCAGTGGAATACTGT+TGG 0.542352 6_4:+79846021 Msa0998660:CDS
CAATCTTCATCAGAGTAAAA+CGG 0.547523 6_4:-79845946 None:intergenic
TCATCGTGATTGCAGGTACT+CGG 0.560112 6_4:+79847935 Msa0998660:intron
TGCACCACCGCATGTAGCTA+CGG 0.561836 6_4:-79845743 None:intergenic
TTTGTCTCTTATCCATACAA+AGG 0.561960 6_4:+79845656 Msa0998660:five_prime_UTR
GAATGGTTGTGGATTCTTGG+TGG 0.562063 6_4:+79846054 Msa0998660:CDS
ACCAACAACCACTGTTGATG+AGG 0.563474 6_4:+79845894 Msa0998660:CDS
TTCTATTTCCTCATCAACAG+TGG 0.566937 6_4:-79845902 None:intergenic
TTATTAAGTTCTCCCAAACA+AGG 0.578223 6_4:-79848533 None:intergenic
GATTGCAGGTACTCGGTGGT+GGG 0.579381 6_4:+79847942 Msa0998660:intron
CTTCTTCTAGAAGAAGGTGG+TGG 0.580078 6_4:-79845814 None:intergenic
TGGATGGACTAGTTCAAACT+AGG 0.580396 6_4:-79848106 None:intergenic
TCAGGCTCTTTGTAAGTACC+AGG 0.580767 6_4:-79845988 None:intergenic
CTGAGGCAAAATTGTCGTGT+TGG 0.595005 6_4:+79848255 Msa0998660:three_prime_UTR
AAGGCCTAAAGTGTATATGT+TGG 0.608192 6_4:-79848514 None:intergenic
ATTTCTTTGAAGGTCCTCAG+TGG 0.623902 6_4:+79846010 Msa0998660:CDS
TTCTAGAAGAAGGTGGTGGT+AGG 0.632029 6_4:-79845810 None:intergenic
GTTCTTCTTCTAGAAGAAGG+TGG 0.632643 6_4:-79845817 None:intergenic
GATTCATATATGCTAAAACA+AGG 0.637122 6_4:-79848147 None:intergenic
ACTTAAGTGTATCAATTCTG+AGG 0.669053 6_4:+79848238 Msa0998660:three_prime_UTR
CTACGGTGAATGCCATTAGA+GGG 0.675379 6_4:-79845726 None:intergenic
GCATTCACCGTAGCTACATG+CGG 0.676586 6_4:+79845736 Msa0998660:CDS
TCGTGATTGCAGGTACTCGG+TGG 0.679621 6_4:+79847938 Msa0998660:intron
TTCACCGTAGCTACATGCGG+TGG 0.691064 6_4:+79845739 Msa0998660:CDS
GGCTCTTTGTAAGTACCAGG+AGG 0.691981 6_4:-79845985 None:intergenic
TTGATGAGGAAATAGAACCA+AGG 0.699980 6_4:+79845908 Msa0998660:CDS
ATTCGAGTCCAATCCTACAG+AGG 0.715767 6_4:+79848078 Msa0998660:CDS
AACCCAACAGTATTCCACTG+AGG 0.795226 6_4:-79846024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTATAAGAAGAAATT+TGG + chr6_4:79846742-79846761 Msa0998660:intron 15.0%
!!! TTTTAGTATAAGAAGAAATT+TGG + chr6_4:79846742-79846761 Msa0998660:intron 15.0%
!!! TATTTTTATGAACTTGTTTT+AGG - chr6_4:79847360-79847379 None:intergenic 15.0%
!! ATTGAAAAAAATATACAACA+CGG - chr6_4:79848284-79848303 None:intergenic 15.0%
!!! TTTAGCTTCTTACAAAAAAA+AGG + chr6_4:79846466-79846485 Msa0998660:intron 20.0%
!!! ACTTAGTTCATATTTTGAAT+TGG - chr6_4:79846951-79846970 None:intergenic 20.0%
!! ACATTTAAATAACCTAGTTA+TGG - chr6_4:79847427-79847446 None:intergenic 20.0%
!! ACTAGGTTATTTAAATGTTA+AGG + chr6_4:79847429-79847448 Msa0998660:intron 20.0%
!! ATAATATTGCAAAACAATTG+TGG - chr6_4:79847503-79847522 None:intergenic 20.0%
!!! TAATTTTATCTTCGAAAACT+TGG - chr6_4:79847595-79847614 None:intergenic 20.0%
!!! TAATCTATTTAGGAAGTTTT+TGG - chr6_4:79847754-79847773 None:intergenic 20.0%
!! AAAAACTTCCTAAATAGATT+AGG + chr6_4:79847753-79847772 Msa0998660:intron 20.0%
!! TTGAAAAAAATATACAACAC+GGG - chr6_4:79848283-79848302 None:intergenic 20.0%
!! ATATCAACTCTAAATTTCAA+TGG - chr6_4:79848339-79848358 None:intergenic 20.0%
!!! TGAAATTTAGAGTTGATATT+TGG + chr6_4:79848340-79848359 Msa0998660:three_prime_UTR 20.0%
!!! TACTATTTTGTTACAAATGT+TGG + chr6_4:79848432-79848451 Msa0998660:three_prime_UTR 20.0%
! ACAAACAATAACTATGTTTG+AGG - chr6_4:79845641-79845660 None:intergenic 25.0%
!! CTTGAGTATTAGAAGAATTT+TGG + chr6_4:79846184-79846203 Msa0998660:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - chr6_4:79846222-79846241 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr6_4:79846223-79846242 None:intergenic 25.0%
! AGTTAAAATGTTTCGATACA+TGG + chr6_4:79846326-79846345 Msa0998660:intron 25.0%
!! TGTTTTCATAAGTATCTTGA+AGG + chr6_4:79846496-79846515 Msa0998660:intron 25.0%
!! GTTTTCATAAGTATCTTGAA+GGG + chr6_4:79846497-79846516 Msa0998660:intron 25.0%
!! GTATTTTGCGTGAATATTAA+TGG - chr6_4:79846614-79846633 None:intergenic 25.0%
! TACTACTAGGTTTCTATATT+AGG - chr6_4:79846697-79846716 None:intergenic 25.0%
!!! AGTTAACTTTTGAGTTTATC+TGG + chr6_4:79846775-79846794 Msa0998660:intron 25.0%
!!! TAGTTCATATTTTGAATTGG+CGG - chr6_4:79846948-79846967 None:intergenic 25.0%
! TCATAAGTAACTAGAACAAT+TGG + chr6_4:79847011-79847030 Msa0998660:intron 25.0%
! CATAAGTAACTAGAACAATT+GGG + chr6_4:79847012-79847031 Msa0998660:intron 25.0%
! TAGTATAAGAAGAAATTTGG+AGG + chr6_4:79846745-79846764 Msa0998660:intron 25.0%
! CGAAGATAAAATTACTTATG+TGG + chr6_4:79847601-79847620 Msa0998660:intron 25.0%
! GATTCATATATGCTAAAACA+AGG - chr6_4:79848150-79848169 None:intergenic 25.0%
!!! GTTTGAAATTTTCATTCACT+TGG - chr6_4:79848172-79848191 None:intergenic 25.0%
! TTGGATTCAAATGTTGAATA+TGG + chr6_4:79848359-79848378 Msa0998660:three_prime_UTR 25.0%
! TGATTCACTTAAGTTATGTT+TGG + chr6_4:79848468-79848487 Msa0998660:three_prime_UTR 25.0%
TTTGTCTCTTATCCATACAA+AGG + chr6_4:79845656-79845675 Msa0998660:five_prime_UTR 30.0%
CAATCTTCATCAGAGTAAAA+CGG - chr6_4:79845949-79845968 None:intergenic 30.0%
! TTTGTTTGTTGCTGAATTGT+TGG + chr6_4:79846121-79846140 Msa0998660:intron 30.0%
!!! TAAGTTGTTTTAACCCACTT+AGG + chr6_4:79846351-79846370 Msa0998660:intron 30.0%
TACTTGTGAGACTATTTGTA+CGG - chr6_4:79846557-79846576 None:intergenic 30.0%
GATCGAAATATTAGATCATG+TGG - chr6_4:79847100-79847119 None:intergenic 30.0%
TCTAATATTTCGATCCATCT+TGG + chr6_4:79847105-79847124 Msa0998660:intron 30.0%
TCGCAAAATAGCAAAAGAAA+AGG - chr6_4:79847158-79847177 None:intergenic 30.0%
AGTTTCTGCTAATGAATTGT+AGG + chr6_4:79847191-79847210 Msa0998660:intron 30.0%
TATAAGAAGAAATTTGGAGG+AGG + chr6_4:79847264-79847283 Msa0998660:intron 30.0%
TGGTCAAATATAGTATCATG+CGG - chr6_4:79847483-79847502 None:intergenic 30.0%
GCAGAGCAATAAAATTTGAA+AGG - chr6_4:79847659-79847678 None:intergenic 30.0%
! GTTTGTTGAATTTAAGCACA+AGG + chr6_4:79847692-79847711 Msa0998660:intron 30.0%
CAAACATGCCTAATCTATTT+AGG - chr6_4:79847764-79847783 None:intergenic 30.0%
CTTGTCATATATCAACATGT+AGG + chr6_4:79847886-79847905 Msa0998660:intron 30.0%
TGCTCCTAGATTGTAATTTA+TGG - chr6_4:79847975-79847994 None:intergenic 30.0%
CTTATTGCACTCAATTTGTA+AGG + chr6_4:79848191-79848210 Msa0998660:three_prime_UTR 30.0%
ACTTAAGTGTATCAATTCTG+AGG + chr6_4:79848238-79848257 Msa0998660:three_prime_UTR 30.0%
CAAATGTTGAATATGGATAG+TGG + chr6_4:79848366-79848385 Msa0998660:three_prime_UTR 30.0%
! AATATGGATAGTGGTTTGTA+TGG + chr6_4:79848375-79848394 Msa0998660:three_prime_UTR 30.0%
TCTACCAACATATACACTTT+AGG + chr6_4:79848510-79848529 Msa0998660:three_prime_UTR 30.0%
AGGAAGTAGTAACCTTTGTA+TGG - chr6_4:79845671-79845690 None:intergenic 35.0%
! GAAAGTGATGATGATGTTGT+AGG - chr6_4:79845691-79845710 None:intergenic 35.0%
! AGTGTTCTTCTTCTAGAAGA+AGG - chr6_4:79845823-79845842 None:intergenic 35.0%
AGATTTCTTCACGTTCAAGA+AGG + chr6_4:79845863-79845882 Msa0998660:CDS 35.0%
TTCTATTTCCTCATCAACAG+TGG - chr6_4:79845905-79845924 None:intergenic 35.0%
TTGATGAGGAAATAGAACCA+AGG + chr6_4:79845908-79845927 Msa0998660:CDS 35.0%
GGTATTTCAACTTCATTCCT+TGG - chr6_4:79845928-79845947 None:intergenic 35.0%
! CGTTTTACTCTGATGAAGAT+TGG + chr6_4:79845947-79845966 Msa0998660:CDS 35.0%
!!! ATGAAGATTGGCCTTTTGAA+TGG + chr6_4:79845959-79845978 Msa0998660:CDS 35.0%
AAAGAGCCTGATTTCTTTGA+AGG + chr6_4:79846000-79846019 Msa0998660:CDS 35.0%
GAAGAATATATGACCCTGTT+TGG + chr6_4:79846206-79846225 Msa0998660:intron 35.0%
CAACTTATTGTGCAGCTTAT+AGG + chr6_4:79846234-79846253 Msa0998660:intron 35.0%
!!! TTGTTTTAACCCACTTAGGT+TGG + chr6_4:79846355-79846374 Msa0998660:intron 35.0%
CTTGAAGGGTTTGTGATATA+CGG + chr6_4:79846511-79846530 Msa0998660:intron 35.0%
TTGTACGGAGTTGCAAAAAA+AGG - chr6_4:79846542-79846561 None:intergenic 35.0%
TCCATTAAGCGTATCCATTA+CGG + chr6_4:79846580-79846599 Msa0998660:intron 35.0%
GCGTGAATATTAATGGTTGT+TGG - chr6_4:79846607-79846626 None:intergenic 35.0%
CAAAATGCACACATACTACT+AGG - chr6_4:79846710-79846729 None:intergenic 35.0%
CACTTATCTAGGAACATGTT+TGG + chr6_4:79846807-79846826 Msa0998660:intron 35.0%
TAGGAACATGTTTGGATTGA+CGG + chr6_4:79846815-79846834 Msa0998660:intron 35.0%
TTTGAACTTTGACGAAAGCA+CGG + chr6_4:79846842-79846861 Msa0998660:intron 35.0%
AGTAACTAGAACAATTGGGT+TGG + chr6_4:79847016-79847035 Msa0998660:intron 35.0%
TAGATCATGTGGCAACAATT+AGG - chr6_4:79847089-79847108 None:intergenic 35.0%
ACTGCAGCACATAGATAAAT+GGG - chr6_4:79847388-79847407 None:intergenic 35.0%
TACTGCAGCACATAGATAAA+TGG - chr6_4:79847389-79847408 None:intergenic 35.0%
ATCTATGTGCTGCAGTATTA+AGG + chr6_4:79847392-79847411 Msa0998660:intron 35.0%
! AGGTTTTTCATGCCATAACT+AGG + chr6_4:79847412-79847431 Msa0998660:intron 35.0%
TATAAGTTCATCGTGATTGC+AGG + chr6_4:79847928-79847947 Msa0998660:intron 35.0%
GCAGCCATAAATTACAATCT+AGG + chr6_4:79847968-79847987 Msa0998660:CDS 35.0%
!!! TCTAGGAGCATCAGATTTTA+AGG + chr6_4:79847985-79848004 Msa0998660:CDS 35.0%
ACAACCTGAAACATCTGAAT+CGG + chr6_4:79848051-79848070 Msa0998660:CDS 35.0%
TGTTTGCTTGTATCTATGGA+TGG - chr6_4:79848125-79848144 None:intergenic 35.0%
GGTATGTTTGCTTGTATCTA+TGG - chr6_4:79848129-79848148 None:intergenic 35.0%
!!! GTGTTTTGATCTGCTTTGTT+TGG + chr6_4:79848407-79848426 Msa0998660:three_prime_UTR 35.0%
AAGGCCTAAAGTGTATATGT+TGG - chr6_4:79848517-79848536 None:intergenic 35.0%
!! TATACACTTTAGGCCTTGTT+TGG + chr6_4:79848520-79848539 Msa0998660:three_prime_UTR 35.0%
!! ATACACTTTAGGCCTTGTTT+GGG + chr6_4:79848521-79848540 Msa0998660:three_prime_UTR 35.0%
CTACTCTTTACACCCTCTAA+TGG + chr6_4:79845714-79845733 Msa0998660:exon 40.0%
! GTTCTTCTTCTAGAAGAAGG+TGG - chr6_4:79845820-79845839 None:intergenic 40.0%
TGAGGACCTTCAAAGAAATC+AGG - chr6_4:79846009-79846028 None:intergenic 40.0%
! ATTTCTTTGAAGGTCCTCAG+TGG + chr6_4:79846010-79846029 Msa0998660:CDS 40.0%
TGGAATACTGTTGGGTTTGT+TGG + chr6_4:79846030-79846049 Msa0998660:CDS 40.0%
!! GATTCTTGGTGGTCTTTTTG+CGG + chr6_4:79846065-79846084 Msa0998660:CDS 40.0%
CCATTAAGCGTATCCATTAC+GGG + chr6_4:79846581-79846600 Msa0998660:intron 40.0%
GGCGACATAATCACTTATCT+AGG + chr6_4:79846796-79846815 Msa0998660:intron 40.0%
AGGAACATGTTTGGATTGAC+GGG + chr6_4:79846816-79846835 Msa0998660:intron 40.0%
TTTCTTGCCAAAATTGCGCT+GGG + chr6_4:79846900-79846919 Msa0998660:intron 40.0%
GATGTCTCACAACGTTATTG+TGG + chr6_4:79847457-79847476 Msa0998660:intron 40.0%
! GTTTAAAGCAGCGTTTCATC+AGG - chr6_4:79847530-79847549 None:intergenic 40.0%
!! CGTTTGTTTCTTTGAAGCCA+AGG + chr6_4:79847831-79847850 Msa0998660:intron 40.0%
TCTCTAGACAAGACATTCCT+TGG - chr6_4:79847851-79847870 None:intergenic 40.0%
TAAGGAAACTCCTGCATACA+AGG + chr6_4:79848003-79848022 Msa0998660:CDS 40.0%
ATGTCCGATTCAGATGTTTC+AGG - chr6_4:79848058-79848077 None:intergenic 40.0%
!! TGGATGGACTAGTTCAAACT+AGG - chr6_4:79848109-79848128 None:intergenic 40.0%
CTACGGTGAATGCCATTAGA+GGG - chr6_4:79845729-79845748 None:intergenic 45.0%
!! TTGTGGTGGTCTTGTTGTAG+AGG - chr6_4:79845774-79845793 None:intergenic 45.0%
! TTCTAGAAGAAGGTGGTGGT+AGG - chr6_4:79845813-79845832 None:intergenic 45.0%
! CTTCTTCTAGAAGAAGGTGG+TGG - chr6_4:79845817-79845836 None:intergenic 45.0%
! CAACAGTGGTTGTTGGTTGT+TGG - chr6_4:79845891-79845910 None:intergenic 45.0%
ACCAACAACCACTGTTGATG+AGG + chr6_4:79845894-79845913 Msa0998660:CDS 45.0%
TCCTCATCAACAGTGGTTGT+TGG - chr6_4:79845898-79845917 None:intergenic 45.0%
TCAGGCTCTTTGTAAGTACC+AGG - chr6_4:79845991-79846010 None:intergenic 45.0%
GTCCTCAGTGGAATACTGTT+GGG + chr6_4:79846022-79846041 Msa0998660:CDS 45.0%
AACCCAACAGTATTCCACTG+AGG - chr6_4:79846027-79846046 None:intergenic 45.0%
!! CTGTTGGGTTTGTTGGAGAA+TGG + chr6_4:79846037-79846056 Msa0998660:CDS 45.0%
!! GGTTTGTTGGAGAATGGTTG+TGG + chr6_4:79846043-79846062 Msa0998660:CDS 45.0%
GGAGAATGGTTGTGGATTCT+TGG + chr6_4:79846051-79846070 Msa0998660:CDS 45.0%
GAATGGTTGTGGATTCTTGG+TGG + chr6_4:79846054-79846073 Msa0998660:CDS 45.0%
GAATCGAACATGAGACCTTG+AGG - chr6_4:79846419-79846438 None:intergenic 45.0%
GTCTCATGTTCGATTCTCTC+CGG + chr6_4:79846423-79846442 Msa0998660:intron 45.0%
! TCTCCGGTGTCAATTTGAGT+GGG + chr6_4:79846439-79846458 Msa0998660:intron 45.0%
TAGCCCACTCAAATTGACAC+CGG - chr6_4:79846445-79846464 None:intergenic 45.0%
!! CCCGTAATGGATACGCTTAA+TGG - chr6_4:79846584-79846603 None:intergenic 45.0%
TAATGGTTGTTGGCCCGTAA+TGG - chr6_4:79846597-79846616 None:intergenic 45.0%
CTCTCACGCTCAACACTATT+GGG - chr6_4:79846636-79846655 None:intergenic 45.0%
! CAATAGTGTTGAGCGTGAGA+GGG + chr6_4:79846635-79846654 Msa0998660:intron 45.0%
GGAACATGTTTGGATTGACG+GGG + chr6_4:79846817-79846836 Msa0998660:intron 45.0%
GTTTCTTGCCAAAATTGCGC+TGG + chr6_4:79846899-79846918 Msa0998660:intron 45.0%
TCGCGAAAACACAACCAAGA+TGG - chr6_4:79847122-79847141 None:intergenic 45.0%
TCATCGTGATTGCAGGTACT+CGG + chr6_4:79847935-79847954 Msa0998660:intron 45.0%
GACTGAGATTCCTTGTATGC+AGG - chr6_4:79848016-79848035 None:intergenic 45.0%
ATTCGAGTCCAATCCTACAG+AGG + chr6_4:79848078-79848097 Msa0998660:CDS 45.0%
AAACTAGGAGCTACCTCTGT+AGG - chr6_4:79848094-79848113 None:intergenic 45.0%
CTGAGGCAAAATTGTCGTGT+TGG + chr6_4:79848255-79848274 Msa0998660:three_prime_UTR 45.0%
GCTACGGTGAATGCCATTAG+AGG - chr6_4:79845730-79845749 None:intergenic 50.0%
GCATTCACCGTAGCTACATG+CGG + chr6_4:79845736-79845755 Msa0998660:CDS 50.0%
! AGAAGAAGGTGGTGGTAGGA+GGG - chr6_4:79845809-79845828 None:intergenic 50.0%
! TAGAAGAAGGTGGTGGTAGG+AGG - chr6_4:79845810-79845829 None:intergenic 50.0%
CCAGGAGGTCTCCATTCAAA+AGG - chr6_4:79845973-79845992 None:intergenic 50.0%
! CCTTTTGAATGGAGACCTCC+TGG + chr6_4:79845970-79845989 Msa0998660:CDS 50.0%
GGCTCTTTGTAAGTACCAGG+AGG - chr6_4:79845988-79846007 None:intergenic 50.0%
GGTCCTCAGTGGAATACTGT+TGG + chr6_4:79846021-79846040 Msa0998660:CDS 50.0%
!! TTAACCCACTTAGGTTGGCC+TGG + chr6_4:79846360-79846379 Msa0998660:intron 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG + chr6_4:79846374-79846393 Msa0998660:intron 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG + chr6_4:79846375-79846394 Msa0998660:intron 50.0%
!! GTGGTATTGACTTGGGACCT+GGG + chr6_4:79846382-79846401 Msa0998660:intron 50.0%
TCGAACATGAGACCTTGAGG+AGG - chr6_4:79846416-79846435 None:intergenic 50.0%
! CTCTCCGGTGTCAATTTGAG+TGG + chr6_4:79846438-79846457 Msa0998660:intron 50.0%
CCTCTCACGCTCAACACTAT+TGG - chr6_4:79846637-79846656 None:intergenic 50.0%
! CCAATAGTGTTGAGCGTGAG+AGG + chr6_4:79846634-79846653 Msa0998660:intron 50.0%
! TGAGAGGGTGTATGCGTGAA+GGG + chr6_4:79846650-79846669 Msa0998660:intron 50.0%
TATGCGTGAAGGGGCTTACT+GGG + chr6_4:79846660-79846679 Msa0998660:intron 50.0%
! CAGATGACCCAGCGCAATTT+TGG - chr6_4:79846910-79846929 None:intergenic 50.0%
AATTGGCGGTGAGTCTGACA+TGG - chr6_4:79846934-79846953 None:intergenic 50.0%
AGGAGCTACCTCTGTAGGAT+TGG - chr6_4:79848089-79848108 None:intergenic 50.0%
TTCACCGTAGCTACATGCGG+TGG + chr6_4:79845739-79845758 Msa0998660:CDS 55.0%
TGCACCACCGCATGTAGCTA+CGG - chr6_4:79845746-79845765 None:intergenic 55.0%
!! GGTGTAGGGTGTTGTTGTGG+TGG - chr6_4:79845788-79845807 None:intergenic 55.0%
!! GAGGGTGTAGGGTGTTGTTG+TGG - chr6_4:79845791-79845810 None:intergenic 55.0%
ACCACCAGGCCAACCTAAGT+GGG - chr6_4:79846367-79846386 None:intergenic 55.0%
TACCACCAGGCCAACCTAAG+TGG - chr6_4:79846368-79846387 None:intergenic 55.0%
GGTCCCAAGTCAATACCACC+AGG - chr6_4:79846381-79846400 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+TGG + chr6_4:79846381-79846400 Msa0998660:intron 55.0%
! GTGAGAGGGTGTATGCGTGA+AGG + chr6_4:79846649-79846668 Msa0998660:intron 55.0%
! GAGAGGGTGTATGCGTGAAG+GGG + chr6_4:79846651-79846670 Msa0998660:intron 55.0%
GTATGCGTGAAGGGGCTTAC+TGG + chr6_4:79846659-79846678 Msa0998660:intron 55.0%
ATGCGTGAAGGGGCTTACTG+GGG + chr6_4:79846661-79846680 Msa0998660:intron 55.0%
TCGTGATTGCAGGTACTCGG+TGG + chr6_4:79847938-79847957 Msa0998660:intron 55.0%
! TGATTGCAGGTACTCGGTGG+TGG + chr6_4:79847941-79847960 Msa0998660:intron 55.0%
! GATTGCAGGTACTCGGTGGT+GGG + chr6_4:79847942-79847961 Msa0998660:intron 55.0%
GTAGCTACATGCGGTGGTGC+AGG + chr6_4:79845745-79845764 Msa0998660:CDS 60.0%
! GGTGGTGGTAGGAGGGTGTA+GGG - chr6_4:79845802-79845821 None:intergenic 60.0%
! AGGTGGTGGTAGGAGGGTGT+AGG - chr6_4:79845803-79845822 None:intergenic 60.0%
!! ACCCACTTAGGTTGGCCTGG+TGG + chr6_4:79846363-79846382 Msa0998660:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr6_4:79846402-79846421 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + chr6_4:79846401-79846420 Msa0998660:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 79845621 79848551 79845621 ID=Msa0998660;Name=Msa0998660
chr6_4 mRNA 79845621 79848551 79845621 ID=Msa0998660-mRNA-1;Parent=Msa0998660;Name=Msa0998660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=112|1|1|1|1|1|2|431|174
chr6_4 exon 79845621 79846086 79845621 ID=Msa0998660-mRNA-1:exon:15137;Parent=Msa0998660-mRNA-1
chr6_4 exon 79847950 79848551 79847950 ID=Msa0998660-mRNA-1:exon:15138;Parent=Msa0998660-mRNA-1
chr6_4 five_prime_UTR 79845621 79845732 79845621 ID=Msa0998660-mRNA-1:five_prime_utr;Parent=Msa0998660-mRNA-1
chr6_4 CDS 79845733 79846086 79845733 ID=Msa0998660-mRNA-1:cds;Parent=Msa0998660-mRNA-1
chr6_4 CDS 79847950 79848120 79847950 ID=Msa0998660-mRNA-1:cds;Parent=Msa0998660-mRNA-1
chr6_4 three_prime_UTR 79848121 79848551 79848121 ID=Msa0998660-mRNA-1:three_prime_utr;Parent=Msa0998660-mRNA-1
Gene Sequence

>Msa0998660

ATGGCATTCACCGTAGCTACATGCGGTGGTGCAGGAATCCTCTACAACAAGACCACCACAACAACACCCTACACCCTCCTACCACCACCTTCTTCTAGAAGAAGAACACTTCACATAGTTTCAGCTAAGAAGATTTCTTCACGTTCAAGAAGGAACCAACAACCAACAACCACTGTTGATGAGGAAATAGAACCAAGGAATGAAGTTGAAATACCGTTTTACTCTGATGAAGATTGGCCTTTTGAATGGAGACCTCCTGGTACTTACAAAGAGCCTGATTTCTTTGAAGGTCCTCAGTGGAATACTGTTGGGTTTGTTGGAGAATGGTTGTGGATTCTTGGTGGTCTTTTTGCGGTACTCGGTGGTGGGTATGCAGCCATAAATTACAATCTAGGAGCATCAGATTTTAAGGAAACTCCTGCATACAAGGAATCTCAGTCTCAAGAACTTTTAGAACAACCTGAAACATCTGAATCGGACATATTCGAGTCCAATCCTACAGAGGTAGCTCCTAGTTTGAACTAG

Protein sequence

>Msa0998660

MAFTVATCGGAGILYNKTTTTTPYTLLPPPSSRRRTLHIVSAKKISSRSRRNQQPTTTVDEEIEPRNEVEIPFYSDEDWPFEWRPPGTYKEPDFFEGPQWNTVGFVGEWLWILGGLFAVLGGGYAAINYNLGASDFKETPAYKESQSQELLEQPETSESDIFESNPTEVAPSLN*