Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272230 | XP_003593371.1 | 92.527 | 281 | 21 | 0 | 1 | 281 | 1 | 281 | 0.0 | 539 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272230 | sp|O65469|CRK9_ARATH | 36.723 | 177 | 92 | 5 | 50 | 212 | 44 | 214 | 3.88e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272230 | G7IFE4 | 92.527 | 281 | 21 | 0 | 1 | 281 | 1 | 281 | 0.0 | 539 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0272230 | 0.846729 | 1.808410e-59 | -8.615850e-47 |
| Msa0014590 | Msa0272230 | 0.801873 | 7.332951e-49 | -8.615850e-47 |
| Msa0048950 | Msa0272230 | 0.800140 | 1.656962e-48 | -8.615850e-47 |
| Msa0059880 | Msa0272230 | 0.842834 | 2.029552e-58 | -8.615850e-47 |
| Msa0063540 | Msa0272230 | 0.816287 | 5.976635e-52 | -8.615850e-47 |
| Msa0075560 | Msa0272230 | 0.807433 | 5.067504e-50 | -8.615850e-47 |
| Msa0123530 | Msa0272230 | 0.805428 | 1.341119e-49 | -8.615850e-47 |
| Msa0140270 | Msa0272230 | 0.820511 | 6.599218e-53 | -8.615850e-47 |
| Msa0142560 | Msa0272230 | 0.821705 | 3.503372e-53 | -8.615850e-47 |
| Msa0150910 | Msa0272230 | 0.873559 | 1.339096e-67 | -8.615850e-47 |
| Msa0150920 | Msa0272230 | 0.827675 | 1.372476e-54 | -8.615850e-47 |
| Msa0166180 | Msa0272230 | 0.800250 | 1.574052e-48 | -8.615850e-47 |
| Msa0190670 | Msa0272230 | 0.845815 | 3.208446e-59 | -8.615850e-47 |
| Msa0190890 | Msa0272230 | 0.837376 | 5.391013e-57 | -8.615850e-47 |
| Msa0195580 | Msa0272230 | 0.816076 | 6.662467e-52 | -8.615850e-47 |
| Msa0207640 | Msa0272230 | 0.815417 | 9.345353e-52 | -8.615850e-47 |
| Msa0212550 | Msa0272230 | 0.805201 | 1.496704e-49 | -8.615850e-47 |
| Msa0232990 | Msa0272230 | 0.929777 | 4.270612e-93 | -8.615850e-47 |
| Msa0233210 | Msa0272230 | 0.819293 | 1.253463e-52 | -8.615850e-47 |
| Msa0272210 | Msa0272230 | 0.816889 | 4.382234e-52 | -8.615850e-47 |
| Msa0272230 | Msa0274250 | 0.809912 | 1.496889e-50 | -8.615850e-47 |
| Msa0272230 | Msa0349910 | 0.801378 | 9.261920e-49 | -8.615850e-47 |
| Msa0272230 | Msa0349930 | 0.833226 | 6.022295e-56 | -8.615850e-47 |
| Msa0272230 | Msa0374040 | 0.804732 | 1.876105e-49 | -8.615850e-47 |
| Msa0272230 | Msa0380680 | 0.824419 | 8.155253e-54 | -8.615850e-47 |
| Msa0272230 | Msa0430460 | 0.802141 | 6.457342e-49 | -8.615850e-47 |
| Msa0272230 | Msa0535570 | 0.838118 | 3.476810e-57 | -8.615850e-47 |
| Msa0272230 | Msa0555920 | 0.806956 | 6.394257e-50 | -8.615850e-47 |
| Msa0272230 | Msa0591490 | 0.813517 | 2.459360e-51 | -8.615850e-47 |
| Msa0272230 | Msa0609460 | 0.831242 | 1.865573e-55 | -8.615850e-47 |
| Msa0272230 | Msa0650100 | 0.820230 | 7.654680e-53 | -8.615850e-47 |
| Msa0272230 | Msa0670360 | 0.816017 | 6.868928e-52 | -8.615850e-47 |
| Msa0272230 | Msa0695630 | 0.802119 | 6.525792e-49 | -8.615850e-47 |
| Msa0272230 | Msa0768670 | 0.801416 | 9.097153e-49 | -8.615850e-47 |
| Msa0272230 | Msa0768720 | 0.803506 | 3.374978e-49 | -8.615850e-47 |
| Msa0272230 | Msa0804170 | 0.807517 | 4.863455e-50 | -8.615850e-47 |
| Msa0272230 | Msa0814160 | 0.812888 | 3.379051e-51 | -8.615850e-47 |
| Msa0272230 | Msa0842180 | 0.804669 | 1.933593e-49 | -8.615850e-47 |
| Msa0272230 | Msa0861730 | 0.805249 | 1.462494e-49 | -8.615850e-47 |
| Msa0272230 | Msa0893840 | 0.843621 | 1.252231e-58 | -8.615850e-47 |
| Msa0272230 | Msa0896920 | 0.821998 | 2.996306e-53 | -8.615850e-47 |
| Msa0272230 | Msa0896950 | 0.810584 | 1.071900e-50 | -8.615850e-47 |
| Msa0272230 | Msa0913550 | 0.806376 | 8.475427e-50 | -8.615850e-47 |
| Msa0272230 | Msa0946010 | 0.811698 | 6.145313e-51 | -8.615850e-47 |
| Msa0272230 | Msa0951150 | 0.815267 | 1.008817e-51 | -8.615850e-47 |
| Msa0272230 | Msa0987640 | 0.809425 | 1.904023e-50 | -8.615850e-47 |
| Msa0272230 | Msa0993450 | 0.810527 | 1.102577e-50 | -8.615850e-47 |
| Msa0272230 | Msa0996980 | 0.820114 | 8.138977e-53 | -8.615850e-47 |
| Msa0272230 | Msa1006170 | 0.804517 | 2.079712e-49 | -8.615850e-47 |
| Msa0272230 | Msa1024350 | 0.801817 | 7.528175e-49 | -8.615850e-47 |
| Msa0272230 | Msa1030320 | 0.822126 | 2.798005e-53 | -8.615850e-47 |
| Msa0272230 | Msa1048350 | 0.814463 | 1.520864e-51 | -8.615850e-47 |
| Msa0272230 | Msa1076830 | 0.831660 | 1.471655e-55 | -8.615850e-47 |
| Msa0272230 | Msa1087380 | 0.813761 | 2.172791e-51 | -8.615850e-47 |
| Msa0272230 | Msa1100030 | 0.809089 | 2.247976e-50 | -8.615850e-47 |
| Msa0272230 | Msa1104960 | 0.815783 | 7.746153e-52 | -8.615850e-47 |
| Msa0272230 | Msa1109880 | 0.813620 | 2.334350e-51 | -8.615850e-47 |
| Msa0272230 | Msa1109890 | 0.800366 | 1.490492e-48 | -8.615850e-47 |
| Msa0272230 | Msa1138110 | 0.801299 | 9.613487e-49 | -8.615850e-47 |
| Msa0272230 | Msa1156240 | 0.815407 | 9.392071e-52 | -8.615850e-47 |
| Msa0272230 | Msa1157210 | 0.817190 | 3.750006e-52 | -8.615850e-47 |
| Msa0272230 | Msa1181090 | 0.805493 | 1.300061e-49 | -8.615850e-47 |
| Msa0272230 | Msa1225850 | 0.804495 | 2.101992e-49 | -8.615850e-47 |
| Msa0272230 | Msa1300610 | 0.813901 | 2.024482e-51 | -8.615850e-47 |
| Msa0272230 | Msa1323120 | 0.804712 | 1.894017e-49 | -8.615850e-47 |
| Msa0272230 | Msa1335100 | 0.801893 | 7.261529e-49 | -8.615850e-47 |
| Msa0272230 | Msa1350870 | 0.806799 | 6.903154e-50 | -8.615850e-47 |
| Msa0272230 | Msa1357860 | 0.812050 | 5.151672e-51 | -8.615850e-47 |
| Msa0272230 | Msa1376070 | 0.830996 | 2.143567e-55 | -8.615850e-47 |
| Msa0272230 | Msa1407670 | 0.809072 | 2.266483e-50 | -8.615850e-47 |
| Msa0272230 | Msa1413020 | 0.808058 | 3.732374e-50 | -8.615850e-47 |
| Msa0272230 | Msa1449770 | 0.811885 | 5.595827e-51 | -8.615850e-47 |
| Msa0272230 | Msa1459610 | 0.823798 | 1.141000e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272230 | MtrunA17_Chr2g0280391 | 92.527 | 281 | 21 | 0 | 1 | 281 | 1 | 281 | 0.0 | 539 |
| Msa0272230 | MtrunA17_Chr2g0280361 | 73.929 | 280 | 64 | 4 | 1 | 280 | 1 | 271 | 2.00e-148 | 416 |
| Msa0272230 | MtrunA17_Chr2g0280381 | 71.886 | 281 | 70 | 4 | 1 | 281 | 1 | 272 | 2.83e-139 | 393 |
| Msa0272230 | MtrunA17_Chr3g0081031 | 35.577 | 208 | 120 | 3 | 50 | 248 | 58 | 260 | 6.21e-35 | 132 |
| Msa0272230 | MtrunA17_Chr3g0081051 | 32.039 | 206 | 126 | 3 | 49 | 245 | 39 | 239 | 1.08e-32 | 120 |
| Msa0272230 | MtrunA17_Chr8g0354271 | 31.364 | 220 | 132 | 5 | 46 | 254 | 45 | 256 | 1.49e-30 | 120 |
| Msa0272230 | MtrunA17_Chr5g0428591 | 29.536 | 237 | 161 | 2 | 15 | 246 | 9 | 244 | 1.90e-30 | 115 |
| Msa0272230 | MtrunA17_Chr3g0081001 | 31.500 | 200 | 134 | 3 | 50 | 246 | 46 | 245 | 2.52e-30 | 119 |
| Msa0272230 | MtrunA17_Chr2g0323011 | 32.020 | 203 | 132 | 4 | 44 | 241 | 38 | 239 | 7.89e-30 | 112 |
| Msa0272230 | MtrunA17_Chr3g0081011 | 32.195 | 205 | 125 | 4 | 50 | 246 | 46 | 244 | 1.10e-28 | 115 |
| Msa0272230 | MtrunA17_Chr1g0206531 | 30.204 | 245 | 159 | 3 | 11 | 246 | 9 | 250 | 2.22e-28 | 114 |
| Msa0272230 | MtrunA17_Chr7g0234231 | 31.336 | 217 | 140 | 5 | 35 | 246 | 25 | 237 | 1.20e-27 | 107 |
| Msa0272230 | MtrunA17_Chr1g0206461 | 31.628 | 215 | 138 | 3 | 38 | 246 | 36 | 247 | 2.80e-27 | 110 |
| Msa0272230 | MtrunA17_Chr2g0322981 | 34.254 | 181 | 107 | 5 | 44 | 216 | 38 | 214 | 8.85e-27 | 104 |
| Msa0272230 | MtrunA17_Chr6g0474871 | 31.651 | 218 | 140 | 3 | 43 | 251 | 36 | 253 | 1.49e-26 | 108 |
| Msa0272230 | MtrunA17_Chr6g0474871 | 30.409 | 171 | 110 | 4 | 52 | 217 | 291 | 457 | 6.94e-17 | 80.5 |
| Msa0272230 | MtrunA17_Chr6g0474901 | 30.252 | 238 | 149 | 6 | 23 | 249 | 15 | 246 | 1.20e-25 | 106 |
| Msa0272230 | MtrunA17_Chr6g0474901 | 31.325 | 166 | 103 | 3 | 54 | 213 | 289 | 449 | 1.30e-19 | 88.6 |
| Msa0272230 | MtrunA17_Chr1g0206331 | 32.258 | 217 | 134 | 5 | 50 | 255 | 47 | 261 | 2.16e-25 | 105 |
| Msa0272230 | MtrunA17_Chr1g0205771 | 33.498 | 203 | 129 | 4 | 50 | 246 | 56 | 258 | 2.92e-25 | 105 |
| Msa0272230 | MtrunA17_Chr5g0428531 | 28.512 | 242 | 162 | 4 | 15 | 247 | 9 | 248 | 8.14e-25 | 100 |
| Msa0272230 | MtrunA17_Chr5g0428571 | 29.108 | 213 | 147 | 1 | 38 | 246 | 33 | 245 | 9.18e-25 | 103 |
| Msa0272230 | MtrunA17_Chr6g0475091 | 31.839 | 223 | 132 | 5 | 38 | 246 | 43 | 259 | 1.11e-24 | 103 |
| Msa0272230 | MtrunA17_Chr6g0475091 | 29.787 | 188 | 117 | 5 | 37 | 217 | 290 | 469 | 3.21e-18 | 84.7 |
| Msa0272230 | MtrunA17_Chr5g0394011 | 29.388 | 245 | 158 | 8 | 50 | 281 | 46 | 288 | 2.20e-24 | 102 |
| Msa0272230 | MtrunA17_Chr8g0354351 | 27.778 | 198 | 142 | 1 | 50 | 246 | 45 | 242 | 7.43e-24 | 100 |
| Msa0272230 | MtrunA17_Chr1g0206351 | 30.698 | 215 | 141 | 4 | 43 | 249 | 42 | 256 | 1.61e-23 | 100 |
| Msa0272230 | MtrunA17_Chr6g0474971 | 32.547 | 212 | 125 | 7 | 11 | 212 | 6 | 209 | 1.85e-23 | 97.4 |
| Msa0272230 | MtrunA17_Chr6g0475001 | 29.134 | 254 | 158 | 7 | 12 | 249 | 6 | 253 | 1.98e-23 | 99.8 |
| Msa0272230 | MtrunA17_Chr6g0475001 | 27.381 | 168 | 106 | 4 | 54 | 213 | 296 | 455 | 1.21e-13 | 70.9 |
| Msa0272230 | MtrunA17_Chr1g0206571 | 30.357 | 224 | 146 | 6 | 37 | 250 | 38 | 261 | 7.07e-23 | 95.9 |
| Msa0272230 | MtrunA17_Chr8g0354421 | 25.490 | 255 | 180 | 5 | 1 | 246 | 16 | 269 | 1.71e-22 | 97.1 |
| Msa0272230 | MtrunA17_Chr8g0354411 | 31.068 | 206 | 130 | 4 | 50 | 246 | 45 | 247 | 4.65e-22 | 93.6 |
| Msa0272230 | MtrunA17_Chr1g0154371 | 29.665 | 209 | 139 | 4 | 12 | 212 | 22 | 230 | 1.48e-21 | 94.4 |
| Msa0272230 | MtrunA17_Chr1g0206521 | 32.127 | 221 | 141 | 3 | 38 | 252 | 679 | 896 | 1.94e-21 | 94.4 |
| Msa0272230 | MtrunA17_Chr1g0206521 | 30.769 | 221 | 144 | 4 | 38 | 252 | 37 | 254 | 1.20e-19 | 89.0 |
| Msa0272230 | MtrunA17_Chr1g0206361 | 33.065 | 248 | 144 | 9 | 51 | 281 | 53 | 295 | 2.01e-21 | 94.0 |
| Msa0272230 | MtrunA17_Chr1g0154361 | 25.806 | 248 | 173 | 5 | 9 | 246 | 5 | 251 | 2.93e-21 | 91.3 |
| Msa0272230 | MtrunA17_Chr6g0474811 | 29.032 | 248 | 151 | 5 | 23 | 251 | 15 | 256 | 7.55e-21 | 92.4 |
| Msa0272230 | MtrunA17_Chr6g0474811 | 27.711 | 166 | 113 | 2 | 52 | 213 | 296 | 458 | 2.76e-14 | 72.8 |
| Msa0272230 | MtrunA17_Chr1g0206291 | 34.239 | 184 | 111 | 6 | 37 | 212 | 48 | 229 | 9.54e-21 | 91.7 |
| Msa0272230 | MtrunA17_Chr1g0206381 | 28.696 | 230 | 138 | 7 | 38 | 249 | 33 | 254 | 3.37e-20 | 88.6 |
| Msa0272230 | MtrunA17_Chr6g0475201 | 30.594 | 219 | 142 | 5 | 6 | 216 | 3 | 219 | 4.67e-20 | 90.1 |
| Msa0272230 | MtrunA17_Chr6g0475201 | 29.231 | 195 | 116 | 5 | 24 | 213 | 279 | 456 | 1.41e-14 | 73.9 |
| Msa0272230 | MtrunA17_Chr1g0206401 | 26.840 | 231 | 131 | 6 | 43 | 249 | 33 | 249 | 4.86e-20 | 89.7 |
| Msa0272230 | MtrunA17_Chr8g0354341 | 26.961 | 204 | 140 | 4 | 50 | 246 | 44 | 245 | 9.60e-20 | 86.3 |
| Msa0272230 | MtrunA17_Chr1g0154311 | 28.638 | 213 | 144 | 3 | 37 | 241 | 34 | 246 | 1.33e-19 | 88.6 |
| Msa0272230 | MtrunA17_Chr1g0154321 | 28.205 | 195 | 122 | 4 | 37 | 216 | 32 | 223 | 1.50e-19 | 88.6 |
| Msa0272230 | MtrunA17_Chr5g0393981 | 30.000 | 180 | 108 | 3 | 45 | 212 | 113 | 286 | 1.54e-19 | 88.6 |
| Msa0272230 | MtrunA17_Chr6g0474861 | 33.133 | 166 | 108 | 3 | 50 | 212 | 43 | 208 | 1.95e-19 | 88.2 |
| Msa0272230 | MtrunA17_Chr6g0475111 | 28.514 | 249 | 150 | 7 | 49 | 280 | 301 | 538 | 1.92e-18 | 85.1 |
| Msa0272230 | MtrunA17_Chr6g0475111 | 26.064 | 188 | 135 | 3 | 63 | 246 | 65 | 252 | 1.13e-15 | 77.0 |
| Msa0272230 | MtrunA17_Chr1g0154351 | 26.908 | 249 | 170 | 7 | 9 | 246 | 5 | 252 | 2.36e-18 | 84.7 |
| Msa0272230 | MtrunA17_Chr1g0206251 | 30.455 | 220 | 139 | 6 | 41 | 246 | 45 | 264 | 4.17e-18 | 84.0 |
| Msa0272230 | MtrunA17_Chr1g0206251 | 26.991 | 226 | 131 | 7 | 43 | 248 | 300 | 511 | 3.20e-16 | 78.6 |
| Msa0272230 | MtrunA17_Chr1g0206561 | 27.778 | 252 | 166 | 4 | 6 | 252 | 4 | 244 | 4.58e-18 | 84.0 |
| Msa0272230 | MtrunA17_Chr8g0354281 | 25.743 | 202 | 145 | 3 | 50 | 246 | 45 | 246 | 5.95e-18 | 83.6 |
| Msa0272230 | MtrunA17_Chr5g0426941 | 26.383 | 235 | 157 | 4 | 38 | 260 | 24 | 254 | 6.11e-18 | 83.6 |
| Msa0272230 | MtrunA17_Chr1g0154341 | 26.577 | 222 | 150 | 6 | 37 | 246 | 32 | 252 | 7.78e-18 | 81.3 |
| Msa0272230 | MtrunA17_Chr6g0475121 | 30.040 | 253 | 164 | 7 | 11 | 252 | 6 | 256 | 1.43e-17 | 82.4 |
| Msa0272230 | MtrunA17_Chr6g0475121 | 29.744 | 195 | 115 | 5 | 24 | 213 | 279 | 456 | 5.85e-16 | 77.8 |
| Msa0272230 | MtrunA17_Chr1g0206651 | 24.590 | 244 | 171 | 5 | 13 | 246 | 10 | 250 | 2.40e-17 | 79.3 |
| Msa0272230 | MtrunA17_Chr5g0394001 | 29.730 | 185 | 122 | 5 | 35 | 212 | 32 | 215 | 1.31e-16 | 79.7 |
| Msa0272230 | MtrunA17_Chr8g0354441 | 25.000 | 208 | 146 | 4 | 50 | 247 | 49 | 256 | 2.86e-16 | 78.6 |
| Msa0272230 | MtrunA17_Chr8g0347571 | 26.423 | 246 | 156 | 5 | 49 | 280 | 287 | 521 | 7.22e-16 | 77.8 |
| Msa0272230 | MtrunA17_Chr8g0347571 | 28.302 | 212 | 140 | 5 | 41 | 246 | 37 | 242 | 2.13e-14 | 73.2 |
| Msa0272230 | MtrunA17_Chr1g0206451 | 30.415 | 217 | 139 | 4 | 38 | 245 | 71 | 284 | 3.58e-15 | 75.5 |
| Msa0272230 | MtrunA17_Chr3g0119041 | 27.602 | 221 | 135 | 7 | 48 | 246 | 44 | 261 | 4.72e-15 | 75.1 |
| Msa0272230 | MtrunA17_Chr1g0206231 | 26.705 | 176 | 124 | 4 | 51 | 221 | 52 | 227 | 4.75e-15 | 75.1 |
| Msa0272230 | MtrunA17_Chr1g0206601 | 25.210 | 238 | 168 | 6 | 27 | 254 | 46 | 283 | 7.75e-15 | 73.2 |
| Msa0272230 | MtrunA17_Chr1g0206581 | 26.860 | 242 | 157 | 9 | 32 | 254 | 47 | 287 | 1.16e-14 | 72.4 |
| Msa0272230 | MtrunA17_Chr8g0354431 | 27.053 | 207 | 137 | 6 | 50 | 246 | 45 | 247 | 2.21e-14 | 73.2 |
| Msa0272230 | MtrunA17_Chr5g0394021 | 25.698 | 179 | 128 | 4 | 72 | 246 | 70 | 247 | 1.05e-12 | 68.2 |
| Msa0272230 | MtrunA17_Chr1g0206201 | 26.667 | 180 | 121 | 4 | 50 | 221 | 51 | 227 | 4.99e-12 | 64.7 |
| Msa0272230 | MtrunA17_Chr3g0110311 | 27.273 | 165 | 106 | 3 | 50 | 212 | 41 | 193 | 5.36e-12 | 64.7 |
| Msa0272230 | MtrunA17_Chr1g0206421 | 31.544 | 149 | 80 | 6 | 82 | 212 | 7 | 151 | 1.89e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272230 | AT4G23170.1 | 36.723 | 177 | 92 | 5 | 50 | 212 | 44 | 214 | 3.94e-24 | 98.6 |
| Msa0272230 | AT4G23180.3 | 34.973 | 183 | 104 | 4 | 44 | 217 | 49 | 225 | 3.91e-23 | 99.0 |
| Msa0272230 | AT4G23180.2 | 34.973 | 183 | 104 | 4 | 44 | 217 | 49 | 225 | 5.00e-23 | 99.0 |
| Msa0272230 | AT4G23180.1 | 34.973 | 183 | 104 | 4 | 44 | 217 | 49 | 225 | 5.57e-23 | 99.0 |
| Msa0272230 | AT4G23160.3 | 33.493 | 209 | 110 | 7 | 21 | 216 | 622 | 814 | 8.57e-23 | 98.6 |
| Msa0272230 | AT4G23160.2 | 33.493 | 209 | 110 | 7 | 21 | 216 | 622 | 814 | 8.57e-23 | 98.6 |
| Msa0272230 | AT4G23160.1 | 33.493 | 209 | 110 | 7 | 21 | 216 | 42 | 234 | 1.23e-22 | 97.8 |
| Msa0272230 | AT4G05200.1 | 34.463 | 177 | 108 | 6 | 50 | 219 | 45 | 220 | 1.71e-22 | 97.4 |
| Msa0272230 | AT4G05200.2 | 34.463 | 177 | 108 | 6 | 50 | 219 | 63 | 238 | 1.81e-22 | 97.4 |
| Msa0272230 | AT3G22060.1 | 27.404 | 208 | 145 | 5 | 38 | 241 | 39 | 244 | 2.38e-21 | 90.9 |
| Msa0272230 | AT4G23140.2 | 35.119 | 168 | 84 | 4 | 65 | 216 | 61 | 219 | 3.79e-21 | 93.6 |
| Msa0272230 | AT4G23140.1 | 35.119 | 168 | 84 | 4 | 65 | 216 | 61 | 219 | 4.11e-21 | 93.6 |
| Msa0272230 | AT4G23310.2 | 33.333 | 174 | 110 | 3 | 50 | 218 | 157 | 329 | 1.09e-20 | 92.4 |
| Msa0272230 | AT4G23310.2 | 28.019 | 207 | 134 | 7 | 53 | 252 | 47 | 245 | 9.65e-11 | 62.8 |
| Msa0272230 | AT4G23310.1 | 33.333 | 174 | 110 | 3 | 50 | 218 | 157 | 329 | 1.12e-20 | 92.0 |
| Msa0272230 | AT4G23310.1 | 28.019 | 207 | 134 | 7 | 53 | 252 | 47 | 245 | 8.00e-11 | 62.8 |
| Msa0272230 | AT5G48540.1 | 31.500 | 200 | 129 | 4 | 54 | 246 | 43 | 241 | 2.02e-20 | 88.6 |
| Msa0272230 | AT4G23230.1 | 32.571 | 175 | 106 | 4 | 51 | 216 | 43 | 214 | 1.62e-19 | 88.6 |
| Msa0272230 | AT1G61750.1 | 29.612 | 206 | 132 | 6 | 44 | 240 | 39 | 240 | 2.66e-19 | 86.7 |
| Msa0272230 | AT4G11530.1 | 27.670 | 206 | 135 | 3 | 50 | 241 | 37 | 242 | 5.29e-19 | 87.0 |
| Msa0272230 | AT4G23150.1 | 34.254 | 181 | 99 | 4 | 50 | 216 | 44 | 218 | 2.12e-18 | 85.5 |
| Msa0272230 | AT3G45860.1 | 35.393 | 178 | 99 | 5 | 50 | 216 | 48 | 220 | 4.62e-18 | 84.3 |
| Msa0272230 | AT4G23240.1 | 29.719 | 249 | 151 | 7 | 49 | 274 | 39 | 286 | 5.78e-18 | 84.0 |
| Msa0272230 | AT3G58310.1 | 25.110 | 227 | 163 | 4 | 28 | 249 | 33 | 257 | 8.65e-18 | 81.3 |
| Msa0272230 | AT4G20670.1 | 24.887 | 221 | 158 | 3 | 38 | 250 | 38 | 258 | 1.04e-17 | 81.3 |
| Msa0272230 | AT4G11521.1 | 26.882 | 186 | 116 | 3 | 50 | 220 | 36 | 216 | 1.08e-17 | 81.3 |
| Msa0272230 | AT4G23280.1 | 30.734 | 218 | 137 | 6 | 50 | 258 | 44 | 256 | 1.37e-17 | 83.2 |
| Msa0272230 | AT4G23280.2 | 30.734 | 218 | 137 | 6 | 50 | 258 | 44 | 256 | 1.49e-17 | 82.8 |
| Msa0272230 | AT4G23280.3 | 30.734 | 218 | 137 | 6 | 50 | 258 | 44 | 256 | 1.54e-17 | 82.8 |
| Msa0272230 | AT4G20640.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 2.13e-17 | 80.1 |
| Msa0272230 | AT4G20630.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 2.13e-17 | 80.1 |
| Msa0272230 | AT4G20580.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 2.13e-17 | 80.1 |
| Msa0272230 | AT4G20600.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 2.13e-17 | 80.1 |
| Msa0272230 | AT4G20620.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 2.13e-17 | 80.1 |
| Msa0272230 | AT4G20610.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 2.13e-17 | 80.1 |
| Msa0272230 | AT4G20590.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 2.13e-17 | 80.1 |
| Msa0272230 | AT1G63580.1 | 27.778 | 216 | 144 | 6 | 48 | 252 | 34 | 248 | 2.59e-17 | 80.1 |
| Msa0272230 | AT4G38830.1 | 26.339 | 224 | 153 | 4 | 37 | 251 | 30 | 250 | 3.56e-17 | 81.6 |
| Msa0272230 | AT4G20570.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 52 | 270 | 4.34e-17 | 79.3 |
| Msa0272230 | AT4G20560.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 52 | 270 | 4.34e-17 | 79.3 |
| Msa0272230 | AT4G20540.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 52 | 270 | 4.34e-17 | 79.3 |
| Msa0272230 | AT4G20645.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 52 | 270 | 4.34e-17 | 79.3 |
| Msa0272230 | AT4G20530.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 52 | 270 | 4.34e-17 | 79.3 |
| Msa0272230 | AT4G20550.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 52 | 270 | 4.34e-17 | 79.3 |
| Msa0272230 | AT3G21990.1 | 24.658 | 219 | 157 | 3 | 38 | 248 | 38 | 256 | 9.95e-17 | 78.2 |
| Msa0272230 | AT4G23190.2 | 25.728 | 206 | 139 | 4 | 50 | 241 | 39 | 244 | 1.01e-16 | 80.5 |
| Msa0272230 | AT4G23190.1 | 25.728 | 206 | 139 | 4 | 50 | 241 | 39 | 244 | 1.07e-16 | 80.5 |
| Msa0272230 | AT4G04570.2 | 25.296 | 253 | 167 | 5 | 50 | 280 | 41 | 293 | 1.31e-16 | 80.1 |
| Msa0272230 | AT4G04570.1 | 25.296 | 253 | 167 | 5 | 50 | 280 | 41 | 293 | 1.41e-16 | 80.1 |
| Msa0272230 | AT2G31620.1 | 24.893 | 233 | 144 | 5 | 28 | 241 | 28 | 248 | 1.82e-16 | 77.4 |
| Msa0272230 | AT4G23220.1 | 26.749 | 243 | 153 | 6 | 9 | 239 | 6 | 235 | 3.22e-16 | 79.0 |
| Msa0272230 | AT4G23200.2 | 25.490 | 204 | 139 | 4 | 46 | 236 | 31 | 234 | 6.38e-16 | 77.8 |
| Msa0272230 | AT4G23200.1 | 25.490 | 204 | 139 | 4 | 46 | 236 | 31 | 234 | 8.03e-16 | 77.8 |
| Msa0272230 | AT4G23270.2 | 28.571 | 217 | 144 | 4 | 50 | 258 | 41 | 254 | 8.19e-16 | 77.8 |
| Msa0272230 | AT4G23270.1 | 28.571 | 217 | 144 | 4 | 50 | 258 | 41 | 254 | 8.19e-16 | 77.8 |
| Msa0272230 | AT4G23270.3 | 28.571 | 217 | 144 | 4 | 50 | 258 | 41 | 254 | 1.06e-15 | 77.4 |
| Msa0272230 | AT4G23130.3 | 31.765 | 170 | 110 | 4 | 53 | 216 | 48 | 217 | 3.74e-15 | 75.9 |
| Msa0272230 | AT4G23130.1 | 31.765 | 170 | 110 | 4 | 53 | 216 | 48 | 217 | 4.42e-15 | 75.5 |
| Msa0272230 | AT4G23130.2 | 31.765 | 170 | 110 | 4 | 53 | 216 | 48 | 217 | 4.55e-15 | 75.5 |
| Msa0272230 | AT4G11490.1 | 24.000 | 250 | 163 | 6 | 50 | 281 | 39 | 279 | 1.01e-14 | 74.3 |
| Msa0272230 | AT4G23210.1 | 24.186 | 215 | 147 | 3 | 23 | 221 | 12 | 226 | 1.29e-14 | 73.9 |
| Msa0272230 | AT4G21410.2 | 28.814 | 177 | 119 | 4 | 43 | 212 | 40 | 216 | 1.47e-14 | 73.9 |
| Msa0272230 | AT4G23210.3 | 24.186 | 215 | 147 | 3 | 23 | 221 | 12 | 226 | 1.86e-14 | 73.6 |
| Msa0272230 | AT4G23210.2 | 24.186 | 215 | 147 | 3 | 23 | 221 | 12 | 226 | 1.97e-14 | 73.6 |
| Msa0272230 | AT4G23210.4 | 24.186 | 215 | 147 | 3 | 23 | 221 | 12 | 226 | 1.97e-14 | 73.6 |
| Msa0272230 | AT4G21410.3 | 28.814 | 177 | 119 | 4 | 43 | 212 | 40 | 216 | 2.15e-14 | 73.6 |
| Msa0272230 | AT4G23210.5 | 24.186 | 215 | 147 | 3 | 23 | 221 | 12 | 226 | 2.38e-14 | 73.2 |
| Msa0272230 | AT5G41290.1 | 23.868 | 243 | 170 | 4 | 6 | 241 | 8 | 242 | 5.53e-14 | 70.9 |
| Msa0272230 | AT4G11460.3 | 25.221 | 226 | 149 | 4 | 34 | 241 | 23 | 246 | 5.59e-14 | 72.4 |
| Msa0272230 | AT4G11460.1 | 25.221 | 226 | 149 | 4 | 34 | 241 | 23 | 246 | 6.74e-14 | 72.0 |
| Msa0272230 | AT4G21400.3 | 26.906 | 223 | 144 | 6 | 1 | 212 | 4 | 218 | 1.16e-13 | 71.2 |
| Msa0272230 | AT4G21400.6 | 26.906 | 223 | 144 | 6 | 1 | 212 | 4 | 218 | 1.31e-13 | 71.2 |
| Msa0272230 | AT4G21400.4 | 26.906 | 223 | 144 | 6 | 1 | 212 | 4 | 218 | 1.31e-13 | 71.2 |
| Msa0272230 | AT4G21400.5 | 26.906 | 223 | 144 | 6 | 1 | 212 | 4 | 218 | 1.31e-13 | 71.2 |
| Msa0272230 | AT4G21400.2 | 27.477 | 222 | 144 | 6 | 1 | 212 | 4 | 218 | 1.33e-13 | 71.2 |
| Msa0272230 | AT4G21230.1 | 27.660 | 188 | 120 | 6 | 36 | 216 | 32 | 210 | 1.39e-13 | 71.2 |
| Msa0272230 | AT4G21400.1 | 26.906 | 223 | 144 | 6 | 1 | 212 | 4 | 218 | 1.40e-13 | 71.2 |
| Msa0272230 | AT3G21960.1 | 22.581 | 248 | 181 | 5 | 11 | 248 | 16 | 262 | 1.49e-13 | 69.3 |
| Msa0272230 | AT1G63590.1 | 26.126 | 222 | 149 | 6 | 43 | 252 | 37 | 255 | 1.58e-13 | 69.3 |
| Msa0272230 | AT5G41300.1 | 24.299 | 214 | 150 | 3 | 36 | 240 | 35 | 245 | 1.75e-13 | 69.7 |
| Msa0272230 | AT4G23300.1 | 25.000 | 188 | 125 | 3 | 50 | 221 | 39 | 226 | 1.91e-13 | 70.9 |
| Msa0272230 | AT1G63600.1 | 25.571 | 219 | 146 | 8 | 36 | 241 | 38 | 252 | 2.03e-13 | 69.7 |
| Msa0272230 | AT1G63550.1 | 28.866 | 194 | 127 | 7 | 36 | 221 | 34 | 224 | 2.03e-13 | 69.7 |
| Msa0272230 | AT3G21910.1 | 24.528 | 212 | 147 | 5 | 30 | 228 | 36 | 247 | 7.59e-13 | 67.8 |
| Msa0272230 | AT4G11480.3 | 25.481 | 208 | 137 | 5 | 50 | 245 | 37 | 238 | 1.22e-12 | 68.2 |
| Msa0272230 | AT4G11480.2 | 25.481 | 208 | 137 | 5 | 50 | 245 | 37 | 238 | 1.24e-12 | 68.2 |
| Msa0272230 | AT3G21920.1 | 23.333 | 210 | 139 | 5 | 51 | 241 | 57 | 263 | 1.29e-12 | 67.0 |
| Msa0272230 | AT4G11480.4 | 25.481 | 208 | 137 | 5 | 50 | 245 | 37 | 238 | 1.44e-12 | 68.2 |
| Msa0272230 | AT4G11480.1 | 25.481 | 208 | 137 | 5 | 50 | 245 | 37 | 238 | 1.51e-12 | 68.2 |
| Msa0272230 | AT3G21920.2 | 23.333 | 210 | 139 | 5 | 51 | 241 | 79 | 285 | 2.29e-12 | 66.6 |
| Msa0272230 | AT3G21930.1 | 23.148 | 216 | 144 | 5 | 51 | 247 | 57 | 269 | 4.76e-12 | 65.5 |
| Msa0272230 | AT4G04540.3 | 24.537 | 216 | 145 | 4 | 50 | 247 | 40 | 255 | 4.86e-12 | 66.2 |
| Msa0272230 | AT4G04540.1 | 24.537 | 216 | 145 | 4 | 50 | 247 | 40 | 255 | 5.08e-12 | 66.2 |
| Msa0272230 | AT4G04540.4 | 24.537 | 216 | 145 | 4 | 50 | 247 | 40 | 255 | 5.47e-12 | 66.2 |
| Msa0272230 | AT4G04540.2 | 24.537 | 216 | 145 | 4 | 50 | 247 | 40 | 255 | 6.68e-12 | 65.9 |
| Msa0272230 | AT4G04500.1 | 26.442 | 208 | 134 | 7 | 58 | 246 | 46 | 253 | 2.18e-11 | 64.3 |
| Msa0272230 | AT4G04500.2 | 26.442 | 208 | 134 | 7 | 58 | 246 | 46 | 253 | 2.18e-11 | 64.3 |
| Msa0272230 | AT4G04500.3 | 26.442 | 208 | 134 | 7 | 58 | 246 | 46 | 253 | 2.18e-11 | 64.3 |
| Msa0272230 | AT3G21970.1 | 23.108 | 251 | 172 | 8 | 8 | 241 | 11 | 257 | 2.49e-11 | 63.2 |
| Msa0272230 | AT4G20680.1 | 24.194 | 186 | 125 | 4 | 71 | 241 | 76 | 260 | 7.11e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAATTTGAAAACCTTAT+TGG | 0.131730 | 2_3:-3786688 | Msa0272230:CDS |
| AGAGTAGAGATGTTACTATT+TGG | 0.275258 | 2_3:-3786497 | Msa0272230:CDS |
| ATGTTACTATTTGGTTTAGA+TGG | 0.328842 | 2_3:-3786488 | Msa0272230:CDS |
| TGATATTGACGACCCTTCTT+TGG | 0.330021 | 2_3:-3786391 | Msa0272230:CDS |
| TGTTATCAGCTTCTTTGTCT+TGG | 0.368216 | 2_3:-3786814 | Msa0272230:CDS |
| AAGGACACAATTAGAACAAT+TGG | 0.378170 | 2_3:+3786554 | None:intergenic |
| ATAGTAACATCTCTACTCTT+AGG | 0.385860 | 2_3:+3786501 | None:intergenic |
| TGAAGCAAGAGAATCCAATA+AGG | 0.391422 | 2_3:+3786674 | None:intergenic |
| TTTGTCTTGGTCTTTCCAAA+TGG | 0.392240 | 2_3:-3786801 | Msa0272230:CDS |
| AAAGGACTGCAGAAGGTGTT+TGG | 0.398608 | 2_3:-3786229 | Msa0272230:CDS |
| GATGATACTAATAGAGAAAC+AGG | 0.400151 | 2_3:-3786762 | Msa0272230:CDS |
| AAGGTGTTTGGATGCTCAAT+TGG | 0.404895 | 2_3:-3786217 | Msa0272230:CDS |
| TATTCAAACGAGAGCTTCTT+CGG | 0.413582 | 2_3:-3786453 | Msa0272230:CDS |
| AATCAAAGTGAGAAGAGATA+TGG | 0.426344 | 2_3:-3786282 | Msa0272230:CDS |
| GCCACTTAGTAAACTTCTGC+AGG | 0.438409 | 2_3:+3785551 | None:intergenic |
| AGGGTACTCTTGTAGAGTTA+AGG | 0.439725 | 2_3:+3786535 | None:intergenic |
| CTCTTAGGACAATCATTTGA+GGG | 0.456818 | 2_3:+3786516 | None:intergenic |
| ATTGTACCATAAAGCCTGTT+CGG | 0.475273 | 2_3:+3786603 | None:intergenic |
| GTTATCAGCTTTATCACATA+GGG | 0.487429 | 2_3:+3786737 | None:intergenic |
| TGTTATCAGCTTTATCACAT+AGG | 0.490174 | 2_3:+3786736 | None:intergenic |
| TTTGTGGTACAGCTGCTTGG+AGG | 0.490855 | 2_3:-3785581 | Msa0272230:intron |
| TCCTGCAGAAGTTTACTAAG+TGG | 0.505356 | 2_3:-3785552 | Msa0272230:CDS |
| CACAAGAGATATCAGTAGAA+AGG | 0.513490 | 2_3:-3786247 | Msa0272230:CDS |
| ACTCTTAGGACAATCATTTG+AGG | 0.514029 | 2_3:+3786515 | None:intergenic |
| CAATGGTTTGGTAAAATCCA+TGG | 0.515661 | 2_3:+3786637 | None:intergenic |
| GACCCTTCTTTGGTTTCACA+AGG | 0.521509 | 2_3:-3786381 | Msa0272230:CDS |
| ATGGTACAATATTATGTAGA+GGG | 0.521935 | 2_3:-3786590 | Msa0272230:CDS |
| AACCCTTGTGAAACCAAAGA+AGG | 0.535672 | 2_3:+3786378 | None:intergenic |
| TCAAACGTCGTTGATAGCCA+TGG | 0.549086 | 2_3:-3786654 | Msa0272230:CDS |
| ATGGATTAAATTGTTTCATG+TGG | 0.553417 | 2_3:-3786149 | Msa0272230:CDS |
| AGCTGCTACTCCACTCATGA+AGG | 0.563734 | 2_3:+3786353 | None:intergenic |
| AATGTCTCAACTCTTCTAAG+TGG | 0.566031 | 2_3:-3786102 | Msa0272230:intron |
| ACTAAGTGGCATAACTGTTG+CGG | 0.566062 | 2_3:-3785538 | Msa0272230:CDS |
| AAGTGAGAAGAGATATGGTA+TGG | 0.567442 | 2_3:-3786277 | Msa0272230:CDS |
| CTCTATTAGTATCATCAGCA+AGG | 0.581875 | 2_3:+3786769 | None:intergenic |
| TATGGTACAATATTATGTAG+AGG | 0.584470 | 2_3:-3786591 | Msa0272230:CDS |
| CAAGGGTTATCCTTCATGAG+TGG | 0.600658 | 2_3:-3786363 | Msa0272230:CDS |
| TCAGTAGAAAGGACTGCAGA+AGG | 0.607880 | 2_3:-3786236 | Msa0272230:CDS |
| AGCTTCTTCGGAGACATGCA+AGG | 0.618399 | 2_3:-3786441 | Msa0272230:CDS |
| ACCCTTGTGAAACCAAAGAA+GGG | 0.636371 | 2_3:+3786379 | None:intergenic |
| AGCTCTCGTTTGAATAGTGT+AGG | 0.641279 | 2_3:+3786460 | None:intergenic |
| TGGTACAATATTATGTAGAG+GGG | 0.649326 | 2_3:-3786589 | Msa0272230:CDS |
| ACCCTTCTTTGGTTTCACAA+GGG | 0.665243 | 2_3:-3786380 | Msa0272230:CDS |
| TAAAGTTCAGTACTTCTGTG+TGG | 0.673426 | 2_3:+3786304 | None:intergenic |
| AGACATGCAAGGAACAGCAA+CGG | 0.674996 | 2_3:-3786430 | Msa0272230:CDS |
| GAATTAGAAAACTATCAACA+AGG | 0.700701 | 2_3:+3785506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGAAAATAAAAAAAGA+TGG | - | chr2_3:3786173-3786192 | Msa0272230:CDS | 10.0% |
| !! | TATTGAAAATAAAAAAAGAT+GGG | - | chr2_3:3786174-3786193 | Msa0272230:CDS | 10.0% |
| !! | TTATTGAAAATAAAAAAAGA+TGG | - | chr2_3:3786173-3786192 | Msa0272230:CDS | 10.0% |
| !! | TATTGAAAATAAAAAAAGAT+GGG | - | chr2_3:3786174-3786193 | Msa0272230:CDS | 10.0% |
| !! | TAAAAAGACTTGAATATTAT+TGG | - | chr2_3:3786620-3786639 | Msa0272230:CDS | 15.0% |
| !!! | TTTGAGATTTATTAATCATA+TGG | - | chr2_3:3786690-3786709 | Msa0272230:CDS | 15.0% |
| !!! | TAATATAAGCTTTTTTTTTG+TGG | - | chr2_3:3786755-3786774 | Msa0272230:CDS | 15.0% |
| !! | TAAAAAGACTTGAATATTAT+TGG | - | chr2_3:3786620-3786639 | Msa0272230:CDS | 15.0% |
| !!! | TTTGAGATTTATTAATCATA+TGG | - | chr2_3:3786690-3786709 | Msa0272230:CDS | 15.0% |
| !!! | TAATATAAGCTTTTTTTTTG+TGG | - | chr2_3:3786755-3786774 | Msa0272230:CDS | 15.0% |
| !!! | GTTTTGCTTATATTTAAGTT+TGG | - | chr2_3:3786465-3786484 | Msa0272230:CDS | 20.0% |
| !!! | GTTTTGCTTATATTTAAGTT+TGG | - | chr2_3:3786465-3786484 | Msa0272230:CDS | 20.0% |
| ! | AACCAATTTGAAAACCTTAT+TGG | - | chr2_3:3785664-3785683 | Msa0272230:intron | 25.0% |
| !! | ATCCAATAAGGTTTTCAAAT+TGG | + | chr2_3:3785669-3785688 | None:intergenic | 25.0% |
| ! | TATGGTACAATATTATGTAG+AGG | - | chr2_3:3785761-3785780 | Msa0272230:intron | 25.0% |
| ! | ATGGTACAATATTATGTAGA+GGG | - | chr2_3:3785762-3785781 | Msa0272230:intron | 25.0% |
| !! | ATGTTACTATTTGGTTTAGA+TGG | - | chr2_3:3785864-3785883 | Msa0272230:intron | 25.0% |
| !! | ATGGATTAAATTGTTTCATG+TGG | - | chr2_3:3786203-3786222 | Msa0272230:CDS | 25.0% |
| ! | TTTCCTTGTGATATCTTATA+AGG | - | chr2_3:3786723-3786742 | Msa0272230:CDS | 25.0% |
| ! | AACCAATTTGAAAACCTTAT+TGG | - | chr2_3:3785664-3785683 | Msa0272230:intron | 25.0% |
| !! | ATCCAATAAGGTTTTCAAAT+TGG | + | chr2_3:3785669-3785688 | None:intergenic | 25.0% |
| ! | TATGGTACAATATTATGTAG+AGG | - | chr2_3:3785761-3785780 | Msa0272230:intron | 25.0% |
| ! | ATGGTACAATATTATGTAGA+GGG | - | chr2_3:3785762-3785781 | Msa0272230:intron | 25.0% |
| !! | ATGTTACTATTTGGTTTAGA+TGG | - | chr2_3:3785864-3785883 | Msa0272230:intron | 25.0% |
| !! | ATGGATTAAATTGTTTCATG+TGG | - | chr2_3:3786203-3786222 | Msa0272230:CDS | 25.0% |
| ! | TTTCCTTGTGATATCTTATA+AGG | - | chr2_3:3786723-3786742 | Msa0272230:CDS | 25.0% |
| GATGATACTAATAGAGAAAC+AGG | - | chr2_3:3785590-3785609 | Msa0272230:intron | 30.0% | |
| ! | GTTATCAGCTTTATCACATA+GGG | + | chr2_3:3785618-3785637 | None:intergenic | 30.0% |
| ! | TGTTATCAGCTTTATCACAT+AGG | + | chr2_3:3785619-3785638 | None:intergenic | 30.0% |
| !!! | GATTTTTTCCTACAATGGTT+TGG | + | chr2_3:3785730-3785749 | None:intergenic | 30.0% |
| TGGTACAATATTATGTAGAG+GGG | - | chr2_3:3785763-3785782 | Msa0272230:intron | 30.0% | |
| AAGGACACAATTAGAACAAT+TGG | + | chr2_3:3785801-3785820 | None:intergenic | 30.0% | |
| ATAGTAACATCTCTACTCTT+AGG | + | chr2_3:3785854-3785873 | None:intergenic | 30.0% | |
| AGAGTAGAGATGTTACTATT+TGG | - | chr2_3:3785855-3785874 | Msa0272230:intron | 30.0% | |
| AATCAAAGTGAGAAGAGATA+TGG | - | chr2_3:3786070-3786089 | Msa0272230:intron | 30.0% | |
| AAAAAAAGATGGGAAGTTCA+TGG | - | chr2_3:3786184-3786203 | Msa0272230:CDS | 30.0% | |
| AAGAACTAACCAAAAGTCAA+AGG | + | chr2_3:3786281-3786300 | None:intergenic | 30.0% | |
| GAAAGTCTTCGTAACATTAT+AGG | - | chr2_3:3786511-3786530 | Msa0272230:CDS | 30.0% | |
| TCTTCGTAACATTATAGGTA+TGG | - | chr2_3:3786516-3786535 | Msa0272230:CDS | 30.0% | |
| CTTCCTTATAAGATATCACA+AGG | + | chr2_3:3786729-3786748 | None:intergenic | 30.0% | |
| GATGATACTAATAGAGAAAC+AGG | - | chr2_3:3785590-3785609 | Msa0272230:intron | 30.0% | |
| ! | GTTATCAGCTTTATCACATA+GGG | + | chr2_3:3785618-3785637 | None:intergenic | 30.0% |
| ! | TGTTATCAGCTTTATCACAT+AGG | + | chr2_3:3785619-3785638 | None:intergenic | 30.0% |
| !!! | GATTTTTTCCTACAATGGTT+TGG | + | chr2_3:3785730-3785749 | None:intergenic | 30.0% |
| TGGTACAATATTATGTAGAG+GGG | - | chr2_3:3785763-3785782 | Msa0272230:intron | 30.0% | |
| AAGGACACAATTAGAACAAT+TGG | + | chr2_3:3785801-3785820 | None:intergenic | 30.0% | |
| ATAGTAACATCTCTACTCTT+AGG | + | chr2_3:3785854-3785873 | None:intergenic | 30.0% | |
| AGAGTAGAGATGTTACTATT+TGG | - | chr2_3:3785855-3785874 | Msa0272230:intron | 30.0% | |
| AATCAAAGTGAGAAGAGATA+TGG | - | chr2_3:3786070-3786089 | Msa0272230:intron | 30.0% | |
| AAAAAAAGATGGGAAGTTCA+TGG | - | chr2_3:3786184-3786203 | Msa0272230:CDS | 30.0% | |
| AAGAACTAACCAAAAGTCAA+AGG | + | chr2_3:3786281-3786300 | None:intergenic | 30.0% | |
| GAAAGTCTTCGTAACATTAT+AGG | - | chr2_3:3786511-3786530 | Msa0272230:CDS | 30.0% | |
| TCTTCGTAACATTATAGGTA+TGG | - | chr2_3:3786516-3786535 | Msa0272230:CDS | 30.0% | |
| CTTCCTTATAAGATATCACA+AGG | + | chr2_3:3786729-3786748 | None:intergenic | 30.0% | |
| TGTTATCAGCTTCTTTGTCT+TGG | - | chr2_3:3785538-3785557 | Msa0272230:CDS | 35.0% | |
| ! | TTTGTCTTGGTCTTTCCAAA+TGG | - | chr2_3:3785551-3785570 | Msa0272230:CDS | 35.0% |
| CTCTATTAGTATCATCAGCA+AGG | + | chr2_3:3785586-3785605 | None:intergenic | 35.0% | |
| TGAAGCAAGAGAATCCAATA+AGG | + | chr2_3:3785681-3785700 | None:intergenic | 35.0% | |
| !! | CAATGGTTTGGTAAAATCCA+TGG | + | chr2_3:3785718-3785737 | None:intergenic | 35.0% |
| ! | GGATTTTACCAAACCATTGT+AGG | - | chr2_3:3785719-3785738 | Msa0272230:intron | 35.0% |
| !!! | GTTCGGATTTTTTCCTACAA+TGG | + | chr2_3:3785735-3785754 | None:intergenic | 35.0% |
| TTGTAGGAAAAAATCCGAAC+AGG | - | chr2_3:3785735-3785754 | Msa0272230:intron | 35.0% | |
| AAAAATCCGAACAGGCTTTA+TGG | - | chr2_3:3785743-3785762 | Msa0272230:intron | 35.0% | |
| ATTGTACCATAAAGCCTGTT+CGG | + | chr2_3:3785752-3785771 | None:intergenic | 35.0% | |
| CTCTTAGGACAATCATTTGA+GGG | + | chr2_3:3785839-3785858 | None:intergenic | 35.0% | |
| ACTCTTAGGACAATCATTTG+AGG | + | chr2_3:3785840-3785859 | None:intergenic | 35.0% | |
| TATTCAAACGAGAGCTTCTT+CGG | - | chr2_3:3785899-3785918 | Msa0272230:intron | 35.0% | |
| TAAAGTTCAGTACTTCTGTG+TGG | + | chr2_3:3786051-3786070 | None:intergenic | 35.0% | |
| AAGTGAGAAGAGATATGGTA+TGG | - | chr2_3:3786075-3786094 | Msa0272230:intron | 35.0% | |
| CACAAGAGATATCAGTAGAA+AGG | - | chr2_3:3786105-3786124 | Msa0272230:CDS | 35.0% | |
| AATGTCTCAACTCTTCTAAG+TGG | - | chr2_3:3786250-3786269 | Msa0272230:CDS | 35.0% | |
| AAGCAAAACGTGCATGTATT+TGG | + | chr2_3:3786454-3786473 | None:intergenic | 35.0% | |
| TGTTATCAGCTTCTTTGTCT+TGG | - | chr2_3:3785538-3785557 | Msa0272230:CDS | 35.0% | |
| ! | TTTGTCTTGGTCTTTCCAAA+TGG | - | chr2_3:3785551-3785570 | Msa0272230:CDS | 35.0% |
| CTCTATTAGTATCATCAGCA+AGG | + | chr2_3:3785586-3785605 | None:intergenic | 35.0% | |
| TGAAGCAAGAGAATCCAATA+AGG | + | chr2_3:3785681-3785700 | None:intergenic | 35.0% | |
| !! | CAATGGTTTGGTAAAATCCA+TGG | + | chr2_3:3785718-3785737 | None:intergenic | 35.0% |
| ! | GGATTTTACCAAACCATTGT+AGG | - | chr2_3:3785719-3785738 | Msa0272230:intron | 35.0% |
| !!! | GTTCGGATTTTTTCCTACAA+TGG | + | chr2_3:3785735-3785754 | None:intergenic | 35.0% |
| TTGTAGGAAAAAATCCGAAC+AGG | - | chr2_3:3785735-3785754 | Msa0272230:intron | 35.0% | |
| AAAAATCCGAACAGGCTTTA+TGG | - | chr2_3:3785743-3785762 | Msa0272230:intron | 35.0% | |
| ATTGTACCATAAAGCCTGTT+CGG | + | chr2_3:3785752-3785771 | None:intergenic | 35.0% | |
| CTCTTAGGACAATCATTTGA+GGG | + | chr2_3:3785839-3785858 | None:intergenic | 35.0% | |
| ACTCTTAGGACAATCATTTG+AGG | + | chr2_3:3785840-3785859 | None:intergenic | 35.0% | |
| TATTCAAACGAGAGCTTCTT+CGG | - | chr2_3:3785899-3785918 | Msa0272230:intron | 35.0% | |
| TAAAGTTCAGTACTTCTGTG+TGG | + | chr2_3:3786051-3786070 | None:intergenic | 35.0% | |
| AAGTGAGAAGAGATATGGTA+TGG | - | chr2_3:3786075-3786094 | Msa0272230:intron | 35.0% | |
| CACAAGAGATATCAGTAGAA+AGG | - | chr2_3:3786105-3786124 | Msa0272230:CDS | 35.0% | |
| AATGTCTCAACTCTTCTAAG+TGG | - | chr2_3:3786250-3786269 | Msa0272230:CDS | 35.0% | |
| AAGCAAAACGTGCATGTATT+TGG | + | chr2_3:3786454-3786473 | None:intergenic | 35.0% | |
| ! | AGGGTACTCTTGTAGAGTTA+AGG | + | chr2_3:3785820-3785839 | None:intergenic | 40.0% |
| AGCTCTCGTTTGAATAGTGT+AGG | + | chr2_3:3785895-3785914 | None:intergenic | 40.0% | |
| TGATATTGACGACCCTTCTT+TGG | - | chr2_3:3785961-3785980 | Msa0272230:intron | 40.0% | |
| ! | ACCCTTCTTTGGTTTCACAA+GGG | - | chr2_3:3785972-3785991 | Msa0272230:intron | 40.0% |
| ACCCTTGTGAAACCAAAGAA+GGG | + | chr2_3:3785976-3785995 | None:intergenic | 40.0% | |
| AACCCTTGTGAAACCAAAGA+AGG | + | chr2_3:3785977-3785996 | None:intergenic | 40.0% | |
| ! | AAGGTGTTTGGATGCTCAAT+TGG | - | chr2_3:3786135-3786154 | Msa0272230:CDS | 40.0% |
| ! | CTAGTGAGTCTGAAATTGGT+AGG | + | chr2_3:3786341-3786360 | None:intergenic | 40.0% |
| CTACCAATTTCAGACTCACT+AGG | - | chr2_3:3786339-3786358 | Msa0272230:CDS | 40.0% | |
| ! | TGTCCTAGTGAGTCTGAAAT+TGG | + | chr2_3:3786345-3786364 | None:intergenic | 40.0% |
| ATGTATCTGATCCACACGTT+TGG | - | chr2_3:3786427-3786446 | Msa0272230:CDS | 40.0% | |
| ATGTATTTGGTCCAAACGTG+TGG | + | chr2_3:3786441-3786460 | None:intergenic | 40.0% | |
| ! | AAACCCCCGTGTTTAACTTA+GGG | + | chr2_3:3786561-3786580 | None:intergenic | 40.0% |
| ! | TAAACCCCCGTGTTTAACTT+AGG | + | chr2_3:3786562-3786581 | None:intergenic | 40.0% |
| !!! | TTTTTTGTGGTACAGCTGCT+TGG | - | chr2_3:3786768-3786787 | Msa0272230:CDS | 40.0% |
| TCCTGCAGAAGTTTACTAAG+TGG | - | chr2_3:3786800-3786819 | Msa0272230:CDS | 40.0% | |
| ACTAAGTGGCATAACTGTTG+CGG | - | chr2_3:3786814-3786833 | Msa0272230:CDS | 40.0% | |
| ! | AGGGTACTCTTGTAGAGTTA+AGG | + | chr2_3:3785820-3785839 | None:intergenic | 40.0% |
| AGCTCTCGTTTGAATAGTGT+AGG | + | chr2_3:3785895-3785914 | None:intergenic | 40.0% | |
| TGATATTGACGACCCTTCTT+TGG | - | chr2_3:3785961-3785980 | Msa0272230:intron | 40.0% | |
| ! | ACCCTTCTTTGGTTTCACAA+GGG | - | chr2_3:3785972-3785991 | Msa0272230:intron | 40.0% |
| ACCCTTGTGAAACCAAAGAA+GGG | + | chr2_3:3785976-3785995 | None:intergenic | 40.0% | |
| AACCCTTGTGAAACCAAAGA+AGG | + | chr2_3:3785977-3785996 | None:intergenic | 40.0% | |
| ! | AAGGTGTTTGGATGCTCAAT+TGG | - | chr2_3:3786135-3786154 | Msa0272230:CDS | 40.0% |
| ! | CTAGTGAGTCTGAAATTGGT+AGG | + | chr2_3:3786341-3786360 | None:intergenic | 40.0% |
| CTACCAATTTCAGACTCACT+AGG | - | chr2_3:3786339-3786358 | Msa0272230:CDS | 40.0% | |
| ! | TGTCCTAGTGAGTCTGAAAT+TGG | + | chr2_3:3786345-3786364 | None:intergenic | 40.0% |
| ATGTATCTGATCCACACGTT+TGG | - | chr2_3:3786427-3786446 | Msa0272230:CDS | 40.0% | |
| ATGTATTTGGTCCAAACGTG+TGG | + | chr2_3:3786441-3786460 | None:intergenic | 40.0% | |
| ! | AAACCCCCGTGTTTAACTTA+GGG | + | chr2_3:3786561-3786580 | None:intergenic | 40.0% |
| ! | TAAACCCCCGTGTTTAACTT+AGG | + | chr2_3:3786562-3786581 | None:intergenic | 40.0% |
| !!! | TTTTTTGTGGTACAGCTGCT+TGG | - | chr2_3:3786768-3786787 | Msa0272230:CDS | 40.0% |
| TCCTGCAGAAGTTTACTAAG+TGG | - | chr2_3:3786800-3786819 | Msa0272230:CDS | 40.0% | |
| ACTAAGTGGCATAACTGTTG+CGG | - | chr2_3:3786814-3786833 | Msa0272230:CDS | 40.0% | |
| GCAAGGCAGAAAAAGCCATT+TGG | + | chr2_3:3785569-3785588 | None:intergenic | 45.0% | |
| !! | TCAAACGTCGTTGATAGCCA+TGG | - | chr2_3:3785698-3785717 | Msa0272230:intron | 45.0% |
| AGACATGCAAGGAACAGCAA+CGG | - | chr2_3:3785922-3785941 | Msa0272230:intron | 45.0% | |
| ! | GACCCTTCTTTGGTTTCACA+AGG | - | chr2_3:3785971-3785990 | Msa0272230:intron | 45.0% |
| CAAGGGTTATCCTTCATGAG+TGG | - | chr2_3:3785989-3786008 | Msa0272230:intron | 45.0% | |
| TCAGTAGAAAGGACTGCAGA+AGG | - | chr2_3:3786116-3786135 | Msa0272230:CDS | 45.0% | |
| !! | AAAGGACTGCAGAAGGTGTT+TGG | - | chr2_3:3786123-3786142 | Msa0272230:CDS | 45.0% |
| !! | GTGGTGAGTCCTTTGACTTT+TGG | - | chr2_3:3786269-3786288 | Msa0272230:CDS | 45.0% |
| TTCGCCCCCTAAGTTAAACA+CGG | - | chr2_3:3786552-3786571 | Msa0272230:CDS | 45.0% | |
| ! | AACCCCCGTGTTTAACTTAG+GGG | + | chr2_3:3786560-3786579 | None:intergenic | 45.0% |
| GCCACTTAGTAAACTTCTGC+AGG | + | chr2_3:3786804-3786823 | None:intergenic | 45.0% | |
| GCAAGGCAGAAAAAGCCATT+TGG | + | chr2_3:3785569-3785588 | None:intergenic | 45.0% | |
| !! | TCAAACGTCGTTGATAGCCA+TGG | - | chr2_3:3785698-3785717 | Msa0272230:intron | 45.0% |
| AGACATGCAAGGAACAGCAA+CGG | - | chr2_3:3785922-3785941 | Msa0272230:intron | 45.0% | |
| ! | GACCCTTCTTTGGTTTCACA+AGG | - | chr2_3:3785971-3785990 | Msa0272230:intron | 45.0% |
| CAAGGGTTATCCTTCATGAG+TGG | - | chr2_3:3785989-3786008 | Msa0272230:intron | 45.0% | |
| TCAGTAGAAAGGACTGCAGA+AGG | - | chr2_3:3786116-3786135 | Msa0272230:CDS | 45.0% | |
| !! | AAAGGACTGCAGAAGGTGTT+TGG | - | chr2_3:3786123-3786142 | Msa0272230:CDS | 45.0% |
| !! | GTGGTGAGTCCTTTGACTTT+TGG | - | chr2_3:3786269-3786288 | Msa0272230:CDS | 45.0% |
| TTCGCCCCCTAAGTTAAACA+CGG | - | chr2_3:3786552-3786571 | Msa0272230:CDS | 45.0% | |
| ! | AACCCCCGTGTTTAACTTAG+GGG | + | chr2_3:3786560-3786579 | None:intergenic | 45.0% |
| GCCACTTAGTAAACTTCTGC+AGG | + | chr2_3:3786804-3786823 | None:intergenic | 45.0% | |
| AGCTTCTTCGGAGACATGCA+AGG | - | chr2_3:3785911-3785930 | Msa0272230:intron | 50.0% | |
| AGCTGCTACTCCACTCATGA+AGG | + | chr2_3:3786002-3786021 | None:intergenic | 50.0% | |
| TCGCCCCCTAAGTTAAACAC+GGG | - | chr2_3:3786553-3786572 | Msa0272230:CDS | 50.0% | |
| ! | ACCCCCGTGTTTAACTTAGG+GGG | + | chr2_3:3786559-3786578 | None:intergenic | 50.0% |
| TTTGTGGTACAGCTGCTTGG+AGG | - | chr2_3:3786771-3786790 | Msa0272230:CDS | 50.0% | |
| AGCTTCTTCGGAGACATGCA+AGG | - | chr2_3:3785911-3785930 | Msa0272230:intron | 50.0% | |
| AGCTGCTACTCCACTCATGA+AGG | + | chr2_3:3786002-3786021 | None:intergenic | 50.0% | |
| TCGCCCCCTAAGTTAAACAC+GGG | - | chr2_3:3786553-3786572 | Msa0272230:CDS | 50.0% | |
| ! | ACCCCCGTGTTTAACTTAGG+GGG | + | chr2_3:3786559-3786578 | None:intergenic | 50.0% |
| TTTGTGGTACAGCTGCTTGG+AGG | - | chr2_3:3786771-3786790 | Msa0272230:CDS | 50.0% | |
| CGCCCCCTAAGTTAAACACG+GGG | - | chr2_3:3786554-3786573 | Msa0272230:CDS | 55.0% | |
| GCCCCCTAAGTTAAACACGG+GGG | - | chr2_3:3786555-3786574 | Msa0272230:CDS | 55.0% | |
| CGCCCCCTAAGTTAAACACG+GGG | - | chr2_3:3786554-3786573 | Msa0272230:CDS | 55.0% | |
| GCCCCCTAAGTTAAACACGG+GGG | - | chr2_3:3786555-3786574 | Msa0272230:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 3785509 | 3786865 | 3785509 | ID=Msa0272230;Name=Msa0272230 |
| chr2_3 | mRNA | 3785509 | 3786865 | 3785509 | ID=Msa0272230-mRNA-1;Parent=Msa0272230;Name=Msa0272230-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|281 |
| chr2_3 | exon | 3786103 | 3786865 | 3786103 | ID=Msa0272230-mRNA-1:exon:1848;Parent=Msa0272230-mRNA-1 |
| chr2_3 | exon | 3785509 | 3785591 | 3785509 | ID=Msa0272230-mRNA-1:exon:1847;Parent=Msa0272230-mRNA-1 |
| chr2_3 | CDS | 3786103 | 3786865 | 3786103 | ID=Msa0272230-mRNA-1:cds;Parent=Msa0272230-mRNA-1 |
| chr2_3 | CDS | 3785509 | 3785591 | 3785509 | ID=Msa0272230-mRNA-1:cds;Parent=Msa0272230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
