Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232990 | XP_003593371.1 | 93.066 | 274 | 19 | 0 | 1 | 274 | 8 | 281 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232990 | sp|O65469|CRK9_ARATH | 35.593 | 177 | 94 | 4 | 43 | 205 | 44 | 214 | 3.33e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232990 | G7IFE4 | 93.066 | 274 | 19 | 0 | 1 | 274 | 8 | 281 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0232990 | 0.841789 | 3.839297e-58 | -8.615850e-47 |
| Msa0017710 | Msa0232990 | 0.804659 | 1.942843e-49 | -8.615850e-47 |
| Msa0059880 | Msa0232990 | 0.807860 | 4.111944e-50 | -8.615850e-47 |
| Msa0121320 | Msa0232990 | 0.812522 | 4.063661e-51 | -8.615850e-47 |
| Msa0132080 | Msa0232990 | -0.803854 | 2.857653e-49 | -8.615850e-47 |
| Msa0150910 | Msa0232990 | 0.844688 | 6.476300e-59 | -8.615850e-47 |
| Msa0150920 | Msa0232990 | 0.803463 | 3.444777e-49 | -8.615850e-47 |
| Msa0166180 | Msa0232990 | 0.809758 | 1.615471e-50 | -8.615850e-47 |
| Msa0190670 | Msa0232990 | 0.821116 | 4.791463e-53 | -8.615850e-47 |
| Msa0190890 | Msa0232990 | 0.813297 | 2.749022e-51 | -8.615850e-47 |
| Msa0207640 | Msa0232990 | 0.809563 | 1.779163e-50 | -8.615850e-47 |
| Msa0232990 | Msa0272210 | 0.820051 | 8.414209e-53 | -8.615850e-47 |
| Msa0232990 | Msa0272230 | 0.929777 | 4.270612e-93 | -8.615850e-47 |
| Msa0232990 | Msa0307630 | 0.802489 | 5.475596e-49 | -8.615850e-47 |
| Msa0232990 | Msa0326770 | 0.802352 | 5.842687e-49 | -8.615850e-47 |
| Msa0232990 | Msa0349910 | 0.807081 | 6.016914e-50 | -8.615850e-47 |
| Msa0232990 | Msa0349930 | 0.803659 | 3.137410e-49 | -8.615850e-47 |
| Msa0232990 | Msa0354600 | 0.805622 | 1.221573e-49 | -8.615850e-47 |
| Msa0232990 | Msa0374040 | 0.810135 | 1.339659e-50 | -8.615850e-47 |
| Msa0232990 | Msa0380680 | 0.807458 | 5.005988e-50 | -8.615850e-47 |
| Msa0232990 | Msa0391270 | 0.808294 | 3.323438e-50 | -8.615850e-47 |
| Msa0232990 | Msa0414480 | 0.812979 | 3.228209e-51 | -8.615850e-47 |
| Msa0232990 | Msa0464620 | 0.800006 | 1.764597e-48 | -8.615850e-47 |
| Msa0232990 | Msa0535570 | 0.829950 | 3.864038e-55 | -8.615850e-47 |
| Msa0232990 | Msa0538520 | 0.809333 | 1.992711e-50 | -8.615850e-47 |
| Msa0232990 | Msa0548790 | 0.800115 | 1.676641e-48 | -8.615850e-47 |
| Msa0232990 | Msa0549170 | 0.810060 | 1.390911e-50 | -8.615850e-47 |
| Msa0232990 | Msa0555920 | 0.809010 | 2.336920e-50 | -8.615850e-47 |
| Msa0232990 | Msa0591490 | 0.826713 | 2.332184e-54 | -8.615850e-47 |
| Msa0232990 | Msa0609460 | 0.831281 | 1.824592e-55 | -8.615850e-47 |
| Msa0232990 | Msa0650100 | 0.808846 | 2.534126e-50 | -8.615850e-47 |
| Msa0232990 | Msa0670360 | 0.819550 | 1.094786e-52 | -8.615850e-47 |
| Msa0232990 | Msa0768670 | 0.803586 | 3.248905e-49 | -8.615850e-47 |
| Msa0232990 | Msa0792410 | 0.800968 | 1.123386e-48 | -8.615850e-47 |
| Msa0232990 | Msa0806930 | 0.809328 | 1.998297e-50 | -8.615850e-47 |
| Msa0232990 | Msa0831890 | 0.803652 | 3.147529e-49 | -8.615850e-47 |
| Msa0232990 | Msa0867430 | 0.800496 | 1.402712e-48 | -8.615850e-47 |
| Msa0232990 | Msa0893220 | 0.823265 | 1.520030e-53 | -8.615850e-47 |
| Msa0232990 | Msa0893840 | 0.811928 | 5.477691e-51 | -8.615850e-47 |
| Msa0232990 | Msa0896920 | 0.844457 | 7.473646e-59 | -8.615850e-47 |
| Msa0232990 | Msa0896950 | 0.812868 | 3.414292e-51 | -8.615850e-47 |
| Msa0232990 | Msa0946010 | 0.809422 | 1.907049e-50 | -8.615850e-47 |
| Msa0232990 | Msa0964510 | 0.813682 | 2.262396e-51 | -8.615850e-47 |
| Msa0232990 | Msa0996980 | 0.833554 | 4.988169e-56 | -8.615850e-47 |
| Msa0232990 | Msa0996990 | 0.821171 | 4.653105e-53 | -8.615850e-47 |
| Msa0232990 | Msa1006170 | 0.803363 | 3.612706e-49 | -8.615850e-47 |
| Msa0232990 | Msa1026050 | 0.804468 | 2.128795e-49 | -8.615850e-47 |
| Msa0232990 | Msa1030320 | 0.826770 | 2.260933e-54 | -8.615850e-47 |
| Msa0232990 | Msa1048350 | 0.805383 | 1.370628e-49 | -8.615850e-47 |
| Msa0232990 | Msa1048400 | 0.804496 | 2.100690e-49 | -8.615850e-47 |
| Msa0232990 | Msa1049400 | 0.812228 | 4.711045e-51 | -8.615850e-47 |
| Msa0232990 | Msa1061670 | 0.800741 | 1.250353e-48 | -8.615850e-47 |
| Msa0232990 | Msa1069350 | 0.809868 | 1.529239e-50 | -8.615850e-47 |
| Msa0232990 | Msa1076830 | 0.811080 | 8.373401e-51 | -8.615850e-47 |
| Msa0232990 | Msa1087380 | 0.804078 | 2.567593e-49 | -8.615850e-47 |
| Msa0232990 | Msa1100030 | 0.802769 | 4.794644e-49 | -8.615850e-47 |
| Msa0232990 | Msa1104960 | 0.802993 | 4.310476e-49 | -8.615850e-47 |
| Msa0232990 | Msa1106680 | 0.804575 | 2.022805e-49 | -8.615850e-47 |
| Msa0232990 | Msa1106960 | 0.802216 | 6.231645e-49 | -8.615850e-47 |
| Msa0232990 | Msa1108560 | 0.808669 | 2.764062e-50 | -8.615850e-47 |
| Msa0232990 | Msa1138110 | 0.801155 | 1.029125e-48 | -8.615850e-47 |
| Msa0232990 | Msa1148210 | 0.805657 | 1.200748e-49 | -8.615850e-47 |
| Msa0232990 | Msa1156240 | 0.819619 | 1.056107e-52 | -8.615850e-47 |
| Msa0232990 | Msa1157210 | 0.828269 | 9.872993e-55 | -8.615850e-47 |
| Msa0232990 | Msa1181090 | 0.812010 | 5.257190e-51 | -8.615850e-47 |
| Msa0232990 | Msa1205270 | -0.800123 | 1.670794e-48 | -8.615850e-47 |
| Msa0232990 | Msa1223960 | 0.801248 | 9.850070e-49 | -8.615850e-47 |
| Msa0232990 | Msa1223990 | 0.801996 | 6.915977e-49 | -8.615850e-47 |
| Msa0232990 | Msa1225850 | 0.804614 | 1.984742e-49 | -8.615850e-47 |
| Msa0232990 | Msa1263110 | 0.818937 | 1.510434e-52 | -8.615850e-47 |
| Msa0232990 | Msa1263120 | 0.803446 | 3.472031e-49 | -8.615850e-47 |
| Msa0232990 | Msa1322500 | 0.801885 | 7.288539e-49 | -8.615850e-47 |
| Msa0232990 | Msa1323260 | -0.800213 | 1.601658e-48 | -8.615850e-47 |
| Msa0232990 | Msa1350870 | 0.802385 | 5.753478e-49 | -8.615850e-47 |
| Msa0232990 | Msa1376070 | 0.811009 | 8.673189e-51 | -8.615850e-47 |
| Msa0232990 | Msa1380740 | 0.801152 | 1.030268e-48 | -8.615850e-47 |
| Msa0232990 | Msa1459610 | 0.809537 | 1.801702e-50 | -8.615850e-47 |
| Msa0232990 | Msa1461660 | 0.802087 | 6.624840e-49 | -8.615850e-47 |
| Msa0232990 | Msa1462610 | 0.804525 | 2.071944e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232990 | MtrunA17_Chr2g0280391 | 93.066 | 274 | 19 | 0 | 1 | 274 | 8 | 281 | 0.0 | 529 |
| Msa0232990 | MtrunA17_Chr2g0280361 | 74.359 | 273 | 61 | 4 | 1 | 273 | 8 | 271 | 7.30e-145 | 407 |
| Msa0232990 | MtrunA17_Chr2g0280381 | 71.898 | 274 | 68 | 4 | 1 | 274 | 8 | 272 | 1.91e-135 | 383 |
| Msa0232990 | MtrunA17_Chr3g0081031 | 35.577 | 208 | 120 | 3 | 43 | 241 | 58 | 260 | 5.16e-35 | 132 |
| Msa0232990 | MtrunA17_Chr3g0081051 | 32.039 | 206 | 126 | 3 | 42 | 238 | 39 | 239 | 8.66e-33 | 120 |
| Msa0232990 | MtrunA17_Chr8g0354271 | 31.364 | 220 | 132 | 5 | 39 | 247 | 45 | 256 | 1.19e-30 | 120 |
| Msa0232990 | MtrunA17_Chr5g0428591 | 29.536 | 237 | 161 | 2 | 8 | 239 | 9 | 244 | 1.58e-30 | 115 |
| Msa0232990 | MtrunA17_Chr3g0081001 | 31.500 | 200 | 134 | 3 | 43 | 239 | 46 | 245 | 1.75e-30 | 120 |
| Msa0232990 | MtrunA17_Chr2g0323011 | 32.020 | 203 | 132 | 4 | 37 | 234 | 38 | 239 | 9.22e-30 | 112 |
| Msa0232990 | MtrunA17_Chr3g0081011 | 32.195 | 205 | 125 | 4 | 43 | 239 | 46 | 244 | 7.20e-29 | 115 |
| Msa0232990 | MtrunA17_Chr1g0206531 | 30.204 | 245 | 159 | 3 | 4 | 239 | 9 | 250 | 1.48e-28 | 114 |
| Msa0232990 | MtrunA17_Chr7g0234231 | 31.336 | 217 | 140 | 5 | 28 | 239 | 25 | 237 | 1.00e-27 | 107 |
| Msa0232990 | MtrunA17_Chr1g0206461 | 31.628 | 215 | 138 | 3 | 31 | 239 | 36 | 247 | 2.91e-27 | 110 |
| Msa0232990 | MtrunA17_Chr2g0322981 | 34.254 | 181 | 107 | 5 | 37 | 209 | 38 | 214 | 7.95e-27 | 104 |
| Msa0232990 | MtrunA17_Chr6g0474871 | 31.651 | 218 | 140 | 3 | 36 | 244 | 36 | 253 | 1.19e-26 | 108 |
| Msa0232990 | MtrunA17_Chr6g0474871 | 30.409 | 171 | 110 | 4 | 45 | 210 | 291 | 457 | 6.84e-17 | 80.5 |
| Msa0232990 | MtrunA17_Chr6g0474901 | 30.252 | 238 | 149 | 6 | 16 | 242 | 15 | 246 | 9.53e-26 | 106 |
| Msa0232990 | MtrunA17_Chr6g0474901 | 31.325 | 166 | 103 | 3 | 47 | 206 | 289 | 449 | 9.66e-20 | 89.0 |
| Msa0232990 | MtrunA17_Chr1g0206331 | 32.258 | 217 | 134 | 5 | 43 | 248 | 47 | 261 | 1.42e-25 | 105 |
| Msa0232990 | MtrunA17_Chr1g0205771 | 33.498 | 203 | 129 | 4 | 43 | 239 | 56 | 258 | 2.62e-25 | 105 |
| Msa0232990 | MtrunA17_Chr5g0428531 | 28.512 | 242 | 162 | 4 | 8 | 240 | 9 | 248 | 6.30e-25 | 100 |
| Msa0232990 | MtrunA17_Chr5g0428571 | 29.108 | 213 | 147 | 1 | 31 | 239 | 33 | 245 | 8.12e-25 | 103 |
| Msa0232990 | MtrunA17_Chr6g0475091 | 31.839 | 223 | 132 | 5 | 31 | 239 | 43 | 259 | 8.90e-25 | 103 |
| Msa0232990 | MtrunA17_Chr6g0475091 | 29.787 | 188 | 117 | 5 | 30 | 210 | 290 | 469 | 3.42e-18 | 84.3 |
| Msa0232990 | MtrunA17_Chr5g0394011 | 29.388 | 245 | 158 | 8 | 43 | 274 | 46 | 288 | 1.42e-24 | 102 |
| Msa0232990 | MtrunA17_Chr8g0354351 | 27.778 | 198 | 142 | 1 | 43 | 239 | 45 | 242 | 6.76e-24 | 100 |
| Msa0232990 | MtrunA17_Chr1g0206351 | 30.698 | 215 | 141 | 4 | 36 | 242 | 42 | 256 | 1.43e-23 | 100 |
| Msa0232990 | MtrunA17_Chr6g0475001 | 29.134 | 254 | 158 | 7 | 5 | 242 | 6 | 253 | 1.55e-23 | 99.8 |
| Msa0232990 | MtrunA17_Chr6g0475001 | 27.381 | 168 | 106 | 4 | 47 | 206 | 296 | 455 | 1.09e-13 | 70.9 |
| Msa0232990 | MtrunA17_Chr6g0474971 | 32.547 | 212 | 125 | 7 | 4 | 205 | 6 | 209 | 1.73e-23 | 97.1 |
| Msa0232990 | MtrunA17_Chr1g0206571 | 30.357 | 224 | 146 | 6 | 30 | 243 | 38 | 261 | 6.97e-23 | 95.5 |
| Msa0232990 | MtrunA17_Chr8g0354411 | 31.068 | 206 | 130 | 4 | 43 | 239 | 45 | 247 | 4.69e-22 | 93.2 |
| Msa0232990 | MtrunA17_Chr8g0354421 | 25.806 | 248 | 174 | 5 | 1 | 239 | 23 | 269 | 4.78e-22 | 95.5 |
| Msa0232990 | MtrunA17_Chr1g0206521 | 32.127 | 221 | 141 | 3 | 31 | 245 | 679 | 896 | 1.14e-21 | 94.7 |
| Msa0232990 | MtrunA17_Chr1g0206521 | 30.769 | 221 | 144 | 4 | 31 | 245 | 37 | 254 | 7.33e-20 | 89.4 |
| Msa0232990 | MtrunA17_Chr1g0154371 | 29.187 | 209 | 140 | 3 | 5 | 205 | 22 | 230 | 1.50e-21 | 94.0 |
| Msa0232990 | MtrunA17_Chr1g0206361 | 33.065 | 248 | 144 | 9 | 44 | 274 | 53 | 295 | 1.83e-21 | 94.0 |
| Msa0232990 | MtrunA17_Chr1g0154361 | 25.703 | 249 | 174 | 5 | 1 | 239 | 4 | 251 | 2.55e-21 | 91.3 |
| Msa0232990 | MtrunA17_Chr6g0474811 | 29.032 | 248 | 151 | 5 | 16 | 244 | 15 | 256 | 4.97e-21 | 92.8 |
| Msa0232990 | MtrunA17_Chr6g0474811 | 27.711 | 166 | 113 | 2 | 45 | 206 | 296 | 458 | 2.76e-14 | 72.8 |
| Msa0232990 | MtrunA17_Chr1g0206291 | 34.239 | 184 | 111 | 6 | 30 | 205 | 48 | 229 | 9.07e-21 | 91.7 |
| Msa0232990 | MtrunA17_Chr1g0206381 | 28.696 | 230 | 138 | 7 | 31 | 242 | 33 | 254 | 3.32e-20 | 88.6 |
| Msa0232990 | MtrunA17_Chr1g0206401 | 26.957 | 230 | 130 | 6 | 37 | 242 | 34 | 249 | 3.64e-20 | 90.1 |
| Msa0232990 | MtrunA17_Chr6g0475201 | 31.308 | 214 | 137 | 5 | 4 | 209 | 8 | 219 | 6.14e-20 | 89.4 |
| Msa0232990 | MtrunA17_Chr6g0475201 | 29.231 | 195 | 116 | 5 | 17 | 206 | 279 | 456 | 1.14e-14 | 73.9 |
| Msa0232990 | MtrunA17_Chr8g0354341 | 26.961 | 204 | 140 | 4 | 43 | 239 | 44 | 245 | 9.92e-20 | 86.3 |
| Msa0232990 | MtrunA17_Chr6g0474861 | 33.133 | 166 | 108 | 3 | 43 | 205 | 43 | 208 | 1.31e-19 | 88.2 |
| Msa0232990 | MtrunA17_Chr5g0393981 | 30.000 | 180 | 108 | 3 | 38 | 205 | 113 | 286 | 1.35e-19 | 88.2 |
| Msa0232990 | MtrunA17_Chr1g0154311 | 28.638 | 213 | 144 | 3 | 30 | 234 | 34 | 246 | 1.42e-19 | 88.2 |
| Msa0232990 | MtrunA17_Chr1g0154321 | 28.205 | 195 | 122 | 4 | 30 | 209 | 32 | 223 | 1.63e-19 | 88.2 |
| Msa0232990 | MtrunA17_Chr6g0475111 | 28.514 | 249 | 150 | 7 | 42 | 273 | 301 | 538 | 1.66e-18 | 85.1 |
| Msa0232990 | MtrunA17_Chr6g0475111 | 26.064 | 188 | 135 | 3 | 56 | 239 | 65 | 252 | 1.31e-15 | 76.6 |
| Msa0232990 | MtrunA17_Chr1g0154351 | 26.908 | 249 | 170 | 7 | 2 | 239 | 5 | 252 | 2.05e-18 | 84.7 |
| Msa0232990 | MtrunA17_Chr1g0206251 | 30.455 | 220 | 139 | 6 | 34 | 239 | 45 | 264 | 3.51e-18 | 84.0 |
| Msa0232990 | MtrunA17_Chr1g0206251 | 26.991 | 226 | 131 | 7 | 36 | 241 | 300 | 511 | 2.74e-16 | 78.6 |
| Msa0232990 | MtrunA17_Chr5g0426941 | 26.383 | 235 | 157 | 4 | 31 | 253 | 24 | 254 | 5.08e-18 | 83.6 |
| Msa0232990 | MtrunA17_Chr8g0354281 | 25.743 | 202 | 145 | 3 | 43 | 239 | 45 | 246 | 5.39e-18 | 83.6 |
| Msa0232990 | MtrunA17_Chr1g0206561 | 28.216 | 241 | 162 | 3 | 10 | 245 | 10 | 244 | 6.03e-18 | 83.6 |
| Msa0232990 | MtrunA17_Chr1g0154341 | 26.244 | 221 | 152 | 5 | 30 | 239 | 32 | 252 | 7.47e-18 | 81.3 |
| Msa0232990 | MtrunA17_Chr6g0475121 | 30.508 | 236 | 153 | 6 | 19 | 245 | 23 | 256 | 1.36e-17 | 82.4 |
| Msa0232990 | MtrunA17_Chr6g0475121 | 29.744 | 195 | 115 | 5 | 17 | 206 | 279 | 456 | 4.21e-16 | 77.8 |
| Msa0232990 | MtrunA17_Chr1g0206651 | 24.590 | 244 | 171 | 5 | 6 | 239 | 10 | 250 | 2.16e-17 | 79.3 |
| Msa0232990 | MtrunA17_Chr5g0394001 | 29.730 | 185 | 122 | 5 | 28 | 205 | 32 | 215 | 1.16e-16 | 79.7 |
| Msa0232990 | MtrunA17_Chr8g0354441 | 25.000 | 208 | 146 | 4 | 43 | 240 | 49 | 256 | 3.82e-16 | 78.2 |
| Msa0232990 | MtrunA17_Chr8g0347571 | 25.681 | 257 | 166 | 5 | 31 | 273 | 276 | 521 | 5.36e-16 | 77.8 |
| Msa0232990 | MtrunA17_Chr8g0347571 | 28.302 | 212 | 140 | 5 | 34 | 239 | 37 | 242 | 2.03e-14 | 73.2 |
| Msa0232990 | MtrunA17_Chr1g0206451 | 30.415 | 217 | 139 | 4 | 31 | 238 | 71 | 284 | 3.41e-15 | 75.5 |
| Msa0232990 | MtrunA17_Chr1g0206231 | 26.705 | 176 | 124 | 4 | 44 | 214 | 52 | 227 | 4.79e-15 | 74.7 |
| Msa0232990 | MtrunA17_Chr3g0119041 | 27.354 | 223 | 137 | 7 | 41 | 241 | 44 | 263 | 4.89e-15 | 74.7 |
| Msa0232990 | MtrunA17_Chr1g0206601 | 25.210 | 238 | 168 | 6 | 20 | 247 | 46 | 283 | 6.92e-15 | 73.2 |
| Msa0232990 | MtrunA17_Chr1g0206581 | 26.860 | 242 | 157 | 9 | 25 | 247 | 47 | 287 | 1.01e-14 | 72.4 |
| Msa0232990 | MtrunA17_Chr8g0354431 | 27.053 | 207 | 137 | 6 | 43 | 239 | 45 | 247 | 2.50e-14 | 72.8 |
| Msa0232990 | MtrunA17_Chr5g0394021 | 25.698 | 179 | 128 | 4 | 65 | 239 | 70 | 247 | 1.18e-12 | 67.8 |
| Msa0232990 | MtrunA17_Chr3g0110311 | 27.273 | 165 | 106 | 3 | 43 | 205 | 41 | 193 | 4.83e-12 | 64.7 |
| Msa0232990 | MtrunA17_Chr1g0206201 | 26.667 | 180 | 121 | 4 | 43 | 214 | 51 | 227 | 5.14e-12 | 64.7 |
| Msa0232990 | MtrunA17_Chr1g0206421 | 31.544 | 149 | 80 | 6 | 75 | 205 | 7 | 151 | 1.78e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232990 | AT4G23170.1 | 35.593 | 177 | 94 | 4 | 43 | 205 | 44 | 214 | 3.39e-24 | 98.6 |
| Msa0232990 | AT4G23180.3 | 34.973 | 183 | 104 | 4 | 37 | 210 | 49 | 225 | 3.62e-23 | 99.0 |
| Msa0232990 | AT4G23180.2 | 34.973 | 183 | 104 | 4 | 37 | 210 | 49 | 225 | 4.57e-23 | 99.0 |
| Msa0232990 | AT4G23180.1 | 34.973 | 183 | 104 | 4 | 37 | 210 | 49 | 225 | 5.32e-23 | 98.6 |
| Msa0232990 | AT4G23160.3 | 33.493 | 209 | 110 | 7 | 14 | 209 | 622 | 814 | 8.47e-23 | 98.2 |
| Msa0232990 | AT4G23160.2 | 33.493 | 209 | 110 | 7 | 14 | 209 | 622 | 814 | 8.47e-23 | 98.2 |
| Msa0232990 | AT4G23160.1 | 33.493 | 209 | 110 | 7 | 14 | 209 | 42 | 234 | 1.09e-22 | 97.8 |
| Msa0232990 | AT4G05200.2 | 34.463 | 177 | 108 | 6 | 43 | 212 | 63 | 238 | 1.47e-22 | 97.4 |
| Msa0232990 | AT4G05200.1 | 34.463 | 177 | 108 | 6 | 43 | 212 | 45 | 220 | 1.57e-22 | 97.4 |
| Msa0232990 | AT3G22060.1 | 27.404 | 208 | 145 | 5 | 31 | 234 | 39 | 244 | 2.49e-21 | 90.5 |
| Msa0232990 | AT4G23140.2 | 35.119 | 168 | 84 | 4 | 58 | 209 | 61 | 219 | 3.82e-21 | 93.2 |
| Msa0232990 | AT4G23140.1 | 35.119 | 168 | 84 | 4 | 58 | 209 | 61 | 219 | 4.03e-21 | 93.2 |
| Msa0232990 | AT4G23310.1 | 33.333 | 174 | 110 | 3 | 43 | 211 | 157 | 329 | 1.04e-20 | 92.0 |
| Msa0232990 | AT4G23310.1 | 28.019 | 207 | 134 | 7 | 46 | 245 | 47 | 245 | 6.98e-11 | 62.8 |
| Msa0232990 | AT4G23310.2 | 33.333 | 174 | 110 | 3 | 43 | 211 | 157 | 329 | 1.12e-20 | 92.0 |
| Msa0232990 | AT4G23310.2 | 28.019 | 207 | 134 | 7 | 46 | 245 | 47 | 245 | 8.43e-11 | 62.8 |
| Msa0232990 | AT5G48540.1 | 31.500 | 200 | 129 | 4 | 47 | 239 | 43 | 241 | 1.61e-20 | 88.6 |
| Msa0232990 | AT4G23230.1 | 32.571 | 175 | 106 | 4 | 44 | 209 | 43 | 214 | 1.47e-19 | 88.6 |
| Msa0232990 | AT1G61750.1 | 29.612 | 206 | 132 | 6 | 37 | 233 | 39 | 240 | 2.16e-19 | 86.7 |
| Msa0232990 | AT4G11530.1 | 27.670 | 206 | 135 | 3 | 43 | 234 | 37 | 242 | 5.23e-19 | 87.0 |
| Msa0232990 | AT4G23150.1 | 34.254 | 181 | 99 | 4 | 43 | 209 | 44 | 218 | 2.06e-18 | 85.1 |
| Msa0232990 | AT3G45860.1 | 35.393 | 178 | 99 | 5 | 43 | 209 | 48 | 220 | 3.39e-18 | 84.7 |
| Msa0232990 | AT4G23240.1 | 29.719 | 249 | 151 | 7 | 42 | 267 | 39 | 286 | 5.97e-18 | 84.0 |
| Msa0232990 | AT3G58310.1 | 25.110 | 227 | 163 | 4 | 21 | 242 | 33 | 257 | 7.23e-18 | 81.3 |
| Msa0232990 | AT4G11521.1 | 26.882 | 186 | 116 | 3 | 43 | 213 | 36 | 216 | 9.43e-18 | 81.3 |
| Msa0232990 | AT4G20670.1 | 24.887 | 221 | 158 | 3 | 31 | 243 | 38 | 258 | 9.76e-18 | 81.3 |
| Msa0232990 | AT4G23280.1 | 30.734 | 218 | 137 | 6 | 43 | 251 | 44 | 256 | 1.32e-17 | 82.8 |
| Msa0232990 | AT4G23280.2 | 30.734 | 218 | 137 | 6 | 43 | 251 | 44 | 256 | 1.39e-17 | 82.8 |
| Msa0232990 | AT4G23280.3 | 30.734 | 218 | 137 | 6 | 43 | 251 | 44 | 256 | 1.40e-17 | 82.8 |
| Msa0232990 | AT4G20640.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 1.72e-17 | 80.1 |
| Msa0232990 | AT4G20630.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 1.72e-17 | 80.1 |
| Msa0232990 | AT4G20580.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 1.72e-17 | 80.1 |
| Msa0232990 | AT4G20600.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 1.72e-17 | 80.1 |
| Msa0232990 | AT4G20620.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 1.72e-17 | 80.1 |
| Msa0232990 | AT4G20610.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 1.72e-17 | 80.1 |
| Msa0232990 | AT4G20590.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 1.72e-17 | 80.1 |
| Msa0232990 | AT1G63580.1 | 27.778 | 216 | 144 | 6 | 41 | 245 | 34 | 248 | 3.20e-17 | 79.7 |
| Msa0232990 | AT4G20570.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 52 | 270 | 4.11e-17 | 79.3 |
| Msa0232990 | AT4G20560.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 52 | 270 | 4.11e-17 | 79.3 |
| Msa0232990 | AT4G20540.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 52 | 270 | 4.11e-17 | 79.3 |
| Msa0232990 | AT4G20645.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 52 | 270 | 4.11e-17 | 79.3 |
| Msa0232990 | AT4G20530.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 52 | 270 | 4.11e-17 | 79.3 |
| Msa0232990 | AT4G20550.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 52 | 270 | 4.11e-17 | 79.3 |
| Msa0232990 | AT4G38830.1 | 26.339 | 224 | 153 | 4 | 30 | 244 | 30 | 250 | 4.53e-17 | 81.3 |
| Msa0232990 | AT3G21990.1 | 24.658 | 219 | 157 | 3 | 31 | 241 | 38 | 256 | 9.16e-17 | 78.2 |
| Msa0232990 | AT4G04570.1 | 25.296 | 253 | 167 | 5 | 43 | 273 | 41 | 293 | 1.10e-16 | 80.1 |
| Msa0232990 | AT4G04570.2 | 25.296 | 253 | 167 | 5 | 43 | 273 | 41 | 293 | 1.11e-16 | 80.1 |
| Msa0232990 | AT4G23190.1 | 26.244 | 221 | 148 | 5 | 43 | 249 | 39 | 258 | 1.25e-16 | 80.1 |
| Msa0232990 | AT4G23190.2 | 25.728 | 206 | 139 | 4 | 43 | 234 | 39 | 244 | 1.34e-16 | 79.7 |
| Msa0232990 | AT2G31620.1 | 24.893 | 233 | 144 | 5 | 21 | 234 | 28 | 248 | 2.36e-16 | 77.0 |
| Msa0232990 | AT4G23220.1 | 26.749 | 243 | 153 | 6 | 2 | 232 | 6 | 235 | 2.70e-16 | 79.0 |
| Msa0232990 | AT4G23200.2 | 25.490 | 204 | 139 | 4 | 39 | 229 | 31 | 234 | 7.62e-16 | 77.4 |
| Msa0232990 | AT4G23200.1 | 25.490 | 204 | 139 | 4 | 39 | 229 | 31 | 234 | 9.02e-16 | 77.4 |
| Msa0232990 | AT4G23270.2 | 28.571 | 217 | 144 | 4 | 43 | 251 | 41 | 254 | 9.20e-16 | 77.4 |
| Msa0232990 | AT4G23270.1 | 28.571 | 217 | 144 | 4 | 43 | 251 | 41 | 254 | 9.20e-16 | 77.4 |
| Msa0232990 | AT4G23270.3 | 28.571 | 217 | 144 | 4 | 43 | 251 | 41 | 254 | 1.00e-15 | 77.4 |
| Msa0232990 | AT4G23130.3 | 31.765 | 170 | 110 | 4 | 46 | 209 | 48 | 217 | 3.47e-15 | 75.5 |
| Msa0232990 | AT4G23130.1 | 31.765 | 170 | 110 | 4 | 46 | 209 | 48 | 217 | 3.83e-15 | 75.5 |
| Msa0232990 | AT4G23130.2 | 31.765 | 170 | 110 | 4 | 46 | 209 | 48 | 217 | 3.91e-15 | 75.5 |
| Msa0232990 | AT4G11490.1 | 24.000 | 250 | 163 | 6 | 43 | 274 | 39 | 279 | 9.16e-15 | 74.3 |
| Msa0232990 | AT4G23210.1 | 24.186 | 215 | 147 | 3 | 16 | 214 | 12 | 226 | 1.10e-14 | 74.3 |
| Msa0232990 | AT4G21410.2 | 28.814 | 177 | 119 | 4 | 36 | 205 | 40 | 216 | 1.42e-14 | 73.9 |
| Msa0232990 | AT4G23210.3 | 24.186 | 215 | 147 | 3 | 16 | 214 | 12 | 226 | 1.64e-14 | 73.6 |
| Msa0232990 | AT4G23210.5 | 24.186 | 215 | 147 | 3 | 16 | 214 | 12 | 226 | 1.92e-14 | 73.6 |
| Msa0232990 | AT4G23210.2 | 24.186 | 215 | 147 | 3 | 16 | 214 | 12 | 226 | 1.95e-14 | 73.2 |
| Msa0232990 | AT4G23210.4 | 24.186 | 215 | 147 | 3 | 16 | 214 | 12 | 226 | 1.95e-14 | 73.2 |
| Msa0232990 | AT4G21410.3 | 28.814 | 177 | 119 | 4 | 36 | 205 | 40 | 216 | 1.98e-14 | 73.6 |
| Msa0232990 | AT4G11460.3 | 25.221 | 226 | 149 | 4 | 27 | 234 | 23 | 246 | 4.93e-14 | 72.4 |
| Msa0232990 | AT4G11460.1 | 25.217 | 230 | 152 | 4 | 27 | 238 | 23 | 250 | 5.32e-14 | 72.4 |
| Msa0232990 | AT5G41290.1 | 23.944 | 213 | 154 | 2 | 29 | 234 | 31 | 242 | 6.09e-14 | 70.9 |
| Msa0232990 | AT4G21230.1 | 27.660 | 188 | 120 | 6 | 29 | 209 | 32 | 210 | 1.19e-13 | 71.2 |
| Msa0232990 | AT3G21960.1 | 22.581 | 248 | 181 | 5 | 4 | 241 | 16 | 262 | 1.22e-13 | 69.7 |
| Msa0232990 | AT1G63600.1 | 25.571 | 219 | 146 | 8 | 29 | 234 | 38 | 252 | 1.41e-13 | 70.1 |
| Msa0232990 | AT4G23300.1 | 25.000 | 188 | 125 | 3 | 43 | 214 | 39 | 226 | 1.51e-13 | 70.9 |
| Msa0232990 | AT1G63590.1 | 26.126 | 222 | 149 | 6 | 36 | 245 | 37 | 255 | 1.52e-13 | 69.3 |
| Msa0232990 | AT5G41300.1 | 24.299 | 214 | 150 | 3 | 29 | 233 | 35 | 245 | 1.70e-13 | 69.3 |
| Msa0232990 | AT1G63550.1 | 28.866 | 194 | 127 | 7 | 29 | 214 | 34 | 224 | 1.89e-13 | 69.7 |
| Msa0232990 | AT4G21400.6 | 27.861 | 201 | 132 | 4 | 16 | 205 | 20 | 218 | 2.30e-13 | 70.1 |
| Msa0232990 | AT4G21400.4 | 27.861 | 201 | 132 | 4 | 16 | 205 | 20 | 218 | 2.30e-13 | 70.1 |
| Msa0232990 | AT4G21400.5 | 27.861 | 201 | 132 | 4 | 16 | 205 | 20 | 218 | 2.30e-13 | 70.1 |
| Msa0232990 | AT4G21400.3 | 27.861 | 201 | 132 | 4 | 16 | 205 | 20 | 218 | 2.32e-13 | 70.1 |
| Msa0232990 | AT4G21400.1 | 27.861 | 201 | 132 | 4 | 16 | 205 | 20 | 218 | 2.35e-13 | 70.1 |
| Msa0232990 | AT4G21400.2 | 27.861 | 201 | 132 | 4 | 16 | 205 | 20 | 218 | 2.49e-13 | 70.1 |
| Msa0232990 | AT3G21910.1 | 24.528 | 212 | 147 | 5 | 23 | 221 | 36 | 247 | 8.41e-13 | 67.4 |
| Msa0232990 | AT4G11480.2 | 25.481 | 208 | 137 | 5 | 43 | 238 | 37 | 238 | 1.13e-12 | 68.2 |
| Msa0232990 | AT4G11480.4 | 25.481 | 208 | 137 | 5 | 43 | 238 | 37 | 238 | 1.35e-12 | 68.2 |
| Msa0232990 | AT4G11480.3 | 25.481 | 208 | 137 | 5 | 43 | 238 | 37 | 238 | 1.39e-12 | 67.8 |
| Msa0232990 | AT4G11480.1 | 25.481 | 208 | 137 | 5 | 43 | 238 | 37 | 238 | 1.40e-12 | 67.8 |
| Msa0232990 | AT3G21920.1 | 23.333 | 210 | 139 | 5 | 44 | 234 | 57 | 263 | 1.64e-12 | 66.6 |
| Msa0232990 | AT3G21920.2 | 23.333 | 210 | 139 | 5 | 44 | 234 | 79 | 285 | 2.33e-12 | 66.2 |
| Msa0232990 | AT4G04540.3 | 24.537 | 216 | 145 | 4 | 43 | 240 | 40 | 255 | 3.89e-12 | 66.6 |
| Msa0232990 | AT4G04540.1 | 24.537 | 216 | 145 | 4 | 43 | 240 | 40 | 255 | 3.91e-12 | 66.6 |
| Msa0232990 | AT4G04540.4 | 24.651 | 215 | 144 | 4 | 43 | 239 | 40 | 254 | 4.62e-12 | 66.2 |
| Msa0232990 | AT3G21930.1 | 23.148 | 216 | 144 | 5 | 44 | 240 | 57 | 269 | 5.14e-12 | 65.1 |
| Msa0232990 | AT4G04540.2 | 24.537 | 216 | 145 | 4 | 43 | 240 | 40 | 255 | 6.49e-12 | 65.9 |
| Msa0232990 | AT4G04500.1 | 26.442 | 208 | 134 | 7 | 51 | 239 | 46 | 253 | 2.08e-11 | 64.3 |
| Msa0232990 | AT4G04500.2 | 26.442 | 208 | 134 | 7 | 51 | 239 | 46 | 253 | 2.32e-11 | 64.3 |
| Msa0232990 | AT4G04500.3 | 26.442 | 208 | 134 | 7 | 51 | 239 | 46 | 253 | 2.32e-11 | 64.3 |
| Msa0232990 | AT3G21970.1 | 23.108 | 251 | 172 | 8 | 1 | 234 | 11 | 257 | 2.32e-11 | 63.2 |
| Msa0232990 | AT3G21940.1 | 23.506 | 251 | 142 | 8 | 21 | 238 | 39 | 272 | 6.37e-11 | 62.0 |
| Msa0232990 | AT4G20680.1 | 22.907 | 227 | 158 | 5 | 23 | 234 | 36 | 260 | 7.45e-11 | 61.6 |
Find 47 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAATTTGAAAACCTTAT+TGG | 0.131730 | 2_2:-5282797 | Msa0232990:CDS |
| AGAGTAGAGATGTTACTATT+TGG | 0.275258 | 2_2:-5282606 | Msa0232990:CDS |
| ATGTTACTATTTGGTTTAGA+TGG | 0.328842 | 2_2:-5282597 | Msa0232990:CDS |
| TGATATTGACGACCCTTCTT+TGG | 0.330021 | 2_2:-5282500 | Msa0232990:CDS |
| TGTTATCAGCTTCTTTGTCT+TGG | 0.368216 | 2_2:-5282923 | Msa0232990:CDS |
| AAGGACACAATTAGAACAAT+TGG | 0.378170 | 2_2:+5282663 | None:intergenic |
| ATAGTAACATCTCTACTCTT+AGG | 0.385860 | 2_2:+5282610 | None:intergenic |
| TGAAGCAAGAGAATCCAATA+AGG | 0.391422 | 2_2:+5282783 | None:intergenic |
| TTTGTCTTGGTCTTTCCAAA+TGG | 0.392240 | 2_2:-5282910 | Msa0232990:CDS |
| AAAGGACTGCAGAAGGTGTT+TGG | 0.398608 | 2_2:-5282338 | Msa0232990:CDS |
| GATGATACTAATAGAGAAAC+AGG | 0.400151 | 2_2:-5282871 | Msa0232990:CDS |
| AAGGTGTTTGGATGCTCAAT+TGG | 0.404895 | 2_2:-5282326 | Msa0232990:CDS |
| TATTCAAACGAGAGCTTCTT+CGG | 0.413582 | 2_2:-5282562 | Msa0232990:CDS |
| GCCACTTAGTAAACTTCTGC+AGG | 0.438409 | 2_2:+5281660 | None:intergenic |
| AGGGTACTCTTGTAGAGTTA+AGG | 0.439725 | 2_2:+5282644 | None:intergenic |
| CTCTTAGGACAATCATTTGA+GGG | 0.456818 | 2_2:+5282625 | None:intergenic |
| ATTGTACCATAAAGCCTGTT+CGG | 0.475273 | 2_2:+5282712 | None:intergenic |
| GTTATCAGCTTTATCACATA+GGG | 0.487429 | 2_2:+5282846 | None:intergenic |
| TGTTATCAGCTTTATCACAT+AGG | 0.490174 | 2_2:+5282845 | None:intergenic |
| TTTGTGGTACAGCTGCTTGG+AGG | 0.490855 | 2_2:-5281690 | Msa0232990:intron |
| TCCTGCAGAAGTTTACTAAG+TGG | 0.505356 | 2_2:-5281661 | Msa0232990:CDS |
| CACAAGAGATATCAGTAGAA+AGG | 0.513490 | 2_2:-5282356 | Msa0232990:CDS |
| ACTCTTAGGACAATCATTTG+AGG | 0.514029 | 2_2:+5282624 | None:intergenic |
| CAATGGTTTGGTAAAATCCA+TGG | 0.515661 | 2_2:+5282746 | None:intergenic |
| GACCCTTCTTTGGTTTCACA+AGG | 0.521509 | 2_2:-5282490 | Msa0232990:CDS |
| ATGGTACAATATTATGTAGA+GGG | 0.521935 | 2_2:-5282699 | Msa0232990:CDS |
| AATCAAAGTGAGAAGAGGTA+TGG | 0.531691 | 2_2:-5282391 | Msa0232990:CDS |
| AACCCTTGTGAAACCAAAGA+AGG | 0.535672 | 2_2:+5282487 | None:intergenic |
| TCAAACGTCGTTGATAGCCA+TGG | 0.549086 | 2_2:-5282763 | Msa0232990:CDS |
| ATGGATTAAATTGTTTCATG+TGG | 0.553417 | 2_2:-5282258 | Msa0232990:CDS |
| AGCTGCTACTCCACTCATGA+AGG | 0.563734 | 2_2:+5282462 | None:intergenic |
| AATGTCTCAACTCTTCTAAG+TGG | 0.566031 | 2_2:-5282211 | Msa0232990:intron |
| ACTAAGTGGCATAACTGTTG+CGG | 0.566062 | 2_2:-5281647 | Msa0232990:CDS |
| CTCTATTAGTATCATCAGCA+AGG | 0.581875 | 2_2:+5282878 | None:intergenic |
| TATGGTACAATATTATGTAG+AGG | 0.584470 | 2_2:-5282700 | Msa0232990:CDS |
| AAGTGAGAAGAGGTATGGAA+TGG | 0.598662 | 2_2:-5282386 | Msa0232990:CDS |
| CAAGGGTTATCCTTCATGAG+TGG | 0.600658 | 2_2:-5282472 | Msa0232990:CDS |
| TCAGTAGAAAGGACTGCAGA+AGG | 0.607880 | 2_2:-5282345 | Msa0232990:CDS |
| AGCTTCTTCGGAGACATGCA+AGG | 0.618399 | 2_2:-5282550 | Msa0232990:CDS |
| ACTTTAATCAAAGTGAGAAG+AGG | 0.632073 | 2_2:-5282396 | Msa0232990:CDS |
| ACCCTTGTGAAACCAAAGAA+GGG | 0.636371 | 2_2:+5282488 | None:intergenic |
| AGCTCTCGTTTGAATAGTGT+AGG | 0.641279 | 2_2:+5282569 | None:intergenic |
| TGGTACAATATTATGTAGAG+GGG | 0.649326 | 2_2:-5282698 | Msa0232990:CDS |
| ACCCTTCTTTGGTTTCACAA+GGG | 0.665243 | 2_2:-5282489 | Msa0232990:CDS |
| TAAAGTTCAGTACTTCTGTG+TGG | 0.673426 | 2_2:+5282413 | None:intergenic |
| AGACATGCAAGGAACAGCAA+CGG | 0.674996 | 2_2:-5282539 | Msa0232990:CDS |
| GAATTAGAAAACTATCAACA+AGG | 0.700701 | 2_2:+5281615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGAAAATAAAAAAAGA+TGG | - | chr2_2:5282261-5282280 | Msa0232990:CDS | 10.0% |
| !! | TATTGAAAATAAAAAAAGAT+GGG | - | chr2_2:5282262-5282281 | Msa0232990:CDS | 10.0% |
| !! | TTATTGAAAATAAAAAAAGA+TGG | - | chr2_2:5282261-5282280 | Msa0232990:CDS | 10.0% |
| !! | TATTGAAAATAAAAAAAGAT+GGG | - | chr2_2:5282262-5282281 | Msa0232990:CDS | 10.0% |
| !! | TAAAAAGACTTGAATATTAT+TGG | - | chr2_2:5282708-5282727 | Msa0232990:CDS | 15.0% |
| !!! | TTTGAGATTTATTAATCATA+TGG | - | chr2_2:5282778-5282797 | Msa0232990:CDS | 15.0% |
| !!! | TAATATAAGCTTTTTTTTTG+TGG | - | chr2_2:5282843-5282862 | Msa0232990:CDS | 15.0% |
| !! | TAAAAAGACTTGAATATTAT+TGG | - | chr2_2:5282708-5282727 | Msa0232990:CDS | 15.0% |
| !!! | TTTGAGATTTATTAATCATA+TGG | - | chr2_2:5282778-5282797 | Msa0232990:CDS | 15.0% |
| !!! | TAATATAAGCTTTTTTTTTG+TGG | - | chr2_2:5282843-5282862 | Msa0232990:CDS | 15.0% |
| !!! | GTTTTGCTTATATTTAAGTT+TGG | - | chr2_2:5282553-5282572 | Msa0232990:CDS | 20.0% |
| !!! | GTTTTGCTTATATTTAAGTT+TGG | - | chr2_2:5282553-5282572 | Msa0232990:CDS | 20.0% |
| ! | AACCAATTTGAAAACCTTAT+TGG | - | chr2_2:5281752-5281771 | Msa0232990:intron | 25.0% |
| !! | ATCCAATAAGGTTTTCAAAT+TGG | + | chr2_2:5281757-5281776 | None:intergenic | 25.0% |
| ! | TATGGTACAATATTATGTAG+AGG | - | chr2_2:5281849-5281868 | Msa0232990:intron | 25.0% |
| ! | ATGGTACAATATTATGTAGA+GGG | - | chr2_2:5281850-5281869 | Msa0232990:intron | 25.0% |
| !! | ATGTTACTATTTGGTTTAGA+TGG | - | chr2_2:5281952-5281971 | Msa0232990:intron | 25.0% |
| !! | ATGGATTAAATTGTTTCATG+TGG | - | chr2_2:5282291-5282310 | Msa0232990:CDS | 25.0% |
| ! | TTTCCTTGTGATATCTTATA+AGG | - | chr2_2:5282811-5282830 | Msa0232990:CDS | 25.0% |
| ! | AACCAATTTGAAAACCTTAT+TGG | - | chr2_2:5281752-5281771 | Msa0232990:intron | 25.0% |
| !! | ATCCAATAAGGTTTTCAAAT+TGG | + | chr2_2:5281757-5281776 | None:intergenic | 25.0% |
| ! | TATGGTACAATATTATGTAG+AGG | - | chr2_2:5281849-5281868 | Msa0232990:intron | 25.0% |
| ! | ATGGTACAATATTATGTAGA+GGG | - | chr2_2:5281850-5281869 | Msa0232990:intron | 25.0% |
| !! | ATGTTACTATTTGGTTTAGA+TGG | - | chr2_2:5281952-5281971 | Msa0232990:intron | 25.0% |
| !! | ATGGATTAAATTGTTTCATG+TGG | - | chr2_2:5282291-5282310 | Msa0232990:CDS | 25.0% |
| ! | TTTCCTTGTGATATCTTATA+AGG | - | chr2_2:5282811-5282830 | Msa0232990:CDS | 25.0% |
| GATGATACTAATAGAGAAAC+AGG | - | chr2_2:5281678-5281697 | Msa0232990:CDS | 30.0% | |
| ! | GTTATCAGCTTTATCACATA+GGG | + | chr2_2:5281706-5281725 | None:intergenic | 30.0% |
| ! | TGTTATCAGCTTTATCACAT+AGG | + | chr2_2:5281707-5281726 | None:intergenic | 30.0% |
| !!! | GATTTTTTCCTACAATGGTT+TGG | + | chr2_2:5281818-5281837 | None:intergenic | 30.0% |
| TGGTACAATATTATGTAGAG+GGG | - | chr2_2:5281851-5281870 | Msa0232990:intron | 30.0% | |
| AAGGACACAATTAGAACAAT+TGG | + | chr2_2:5281889-5281908 | None:intergenic | 30.0% | |
| ATAGTAACATCTCTACTCTT+AGG | + | chr2_2:5281942-5281961 | None:intergenic | 30.0% | |
| AGAGTAGAGATGTTACTATT+TGG | - | chr2_2:5281943-5281962 | Msa0232990:intron | 30.0% | |
| ACTTTAATCAAAGTGAGAAG+AGG | - | chr2_2:5282153-5282172 | Msa0232990:intron | 30.0% | |
| AAAAAAAGATGGGAAGTTCA+TGG | - | chr2_2:5282272-5282291 | Msa0232990:CDS | 30.0% | |
| AAGAACTAACCAAAAGTCAA+AGG | + | chr2_2:5282369-5282388 | None:intergenic | 30.0% | |
| CTTCCTTATAAGATATCACA+AGG | + | chr2_2:5282817-5282836 | None:intergenic | 30.0% | |
| GATGATACTAATAGAGAAAC+AGG | - | chr2_2:5281678-5281697 | Msa0232990:CDS | 30.0% | |
| ! | GTTATCAGCTTTATCACATA+GGG | + | chr2_2:5281706-5281725 | None:intergenic | 30.0% |
| ! | TGTTATCAGCTTTATCACAT+AGG | + | chr2_2:5281707-5281726 | None:intergenic | 30.0% |
| !!! | GATTTTTTCCTACAATGGTT+TGG | + | chr2_2:5281818-5281837 | None:intergenic | 30.0% |
| TGGTACAATATTATGTAGAG+GGG | - | chr2_2:5281851-5281870 | Msa0232990:intron | 30.0% | |
| AAGGACACAATTAGAACAAT+TGG | + | chr2_2:5281889-5281908 | None:intergenic | 30.0% | |
| ATAGTAACATCTCTACTCTT+AGG | + | chr2_2:5281942-5281961 | None:intergenic | 30.0% | |
| AGAGTAGAGATGTTACTATT+TGG | - | chr2_2:5281943-5281962 | Msa0232990:intron | 30.0% | |
| ACTTTAATCAAAGTGAGAAG+AGG | - | chr2_2:5282153-5282172 | Msa0232990:intron | 30.0% | |
| AAAAAAAGATGGGAAGTTCA+TGG | - | chr2_2:5282272-5282291 | Msa0232990:CDS | 30.0% | |
| AAGAACTAACCAAAAGTCAA+AGG | + | chr2_2:5282369-5282388 | None:intergenic | 30.0% | |
| CTTCCTTATAAGATATCACA+AGG | + | chr2_2:5282817-5282836 | None:intergenic | 30.0% | |
| TGTTATCAGCTTCTTTGTCT+TGG | - | chr2_2:5281626-5281645 | Msa0232990:CDS | 35.0% | |
| ! | TTTGTCTTGGTCTTTCCAAA+TGG | - | chr2_2:5281639-5281658 | Msa0232990:CDS | 35.0% |
| CTCTATTAGTATCATCAGCA+AGG | + | chr2_2:5281674-5281693 | None:intergenic | 35.0% | |
| TGAAGCAAGAGAATCCAATA+AGG | + | chr2_2:5281769-5281788 | None:intergenic | 35.0% | |
| !! | CAATGGTTTGGTAAAATCCA+TGG | + | chr2_2:5281806-5281825 | None:intergenic | 35.0% |
| ! | GGATTTTACCAAACCATTGT+AGG | - | chr2_2:5281807-5281826 | Msa0232990:intron | 35.0% |
| !!! | GTTCGGATTTTTTCCTACAA+TGG | + | chr2_2:5281823-5281842 | None:intergenic | 35.0% |
| TTGTAGGAAAAAATCCGAAC+AGG | - | chr2_2:5281823-5281842 | Msa0232990:intron | 35.0% | |
| AAAAATCCGAACAGGCTTTA+TGG | - | chr2_2:5281831-5281850 | Msa0232990:intron | 35.0% | |
| ATTGTACCATAAAGCCTGTT+CGG | + | chr2_2:5281840-5281859 | None:intergenic | 35.0% | |
| CTCTTAGGACAATCATTTGA+GGG | + | chr2_2:5281927-5281946 | None:intergenic | 35.0% | |
| ACTCTTAGGACAATCATTTG+AGG | + | chr2_2:5281928-5281947 | None:intergenic | 35.0% | |
| TATTCAAACGAGAGCTTCTT+CGG | - | chr2_2:5281987-5282006 | Msa0232990:intron | 35.0% | |
| TAAAGTTCAGTACTTCTGTG+TGG | + | chr2_2:5282139-5282158 | None:intergenic | 35.0% | |
| AATCAAAGTGAGAAGAGGTA+TGG | - | chr2_2:5282158-5282177 | Msa0232990:intron | 35.0% | |
| CACAAGAGATATCAGTAGAA+AGG | - | chr2_2:5282193-5282212 | Msa0232990:intron | 35.0% | |
| AATGTCTCAACTCTTCTAAG+TGG | - | chr2_2:5282338-5282357 | Msa0232990:CDS | 35.0% | |
| AAGCAAAACGTGCATGTATT+TGG | + | chr2_2:5282542-5282561 | None:intergenic | 35.0% | |
| GAAAGTCTTCGTAGCATTAT+AGG | - | chr2_2:5282599-5282618 | Msa0232990:CDS | 35.0% | |
| TCTTCGTAGCATTATAGGTA+TGG | - | chr2_2:5282604-5282623 | Msa0232990:CDS | 35.0% | |
| TGTTATCAGCTTCTTTGTCT+TGG | - | chr2_2:5281626-5281645 | Msa0232990:CDS | 35.0% | |
| ! | TTTGTCTTGGTCTTTCCAAA+TGG | - | chr2_2:5281639-5281658 | Msa0232990:CDS | 35.0% |
| CTCTATTAGTATCATCAGCA+AGG | + | chr2_2:5281674-5281693 | None:intergenic | 35.0% | |
| TGAAGCAAGAGAATCCAATA+AGG | + | chr2_2:5281769-5281788 | None:intergenic | 35.0% | |
| !! | CAATGGTTTGGTAAAATCCA+TGG | + | chr2_2:5281806-5281825 | None:intergenic | 35.0% |
| ! | GGATTTTACCAAACCATTGT+AGG | - | chr2_2:5281807-5281826 | Msa0232990:intron | 35.0% |
| !!! | GTTCGGATTTTTTCCTACAA+TGG | + | chr2_2:5281823-5281842 | None:intergenic | 35.0% |
| TTGTAGGAAAAAATCCGAAC+AGG | - | chr2_2:5281823-5281842 | Msa0232990:intron | 35.0% | |
| AAAAATCCGAACAGGCTTTA+TGG | - | chr2_2:5281831-5281850 | Msa0232990:intron | 35.0% | |
| ATTGTACCATAAAGCCTGTT+CGG | + | chr2_2:5281840-5281859 | None:intergenic | 35.0% | |
| CTCTTAGGACAATCATTTGA+GGG | + | chr2_2:5281927-5281946 | None:intergenic | 35.0% | |
| ACTCTTAGGACAATCATTTG+AGG | + | chr2_2:5281928-5281947 | None:intergenic | 35.0% | |
| TATTCAAACGAGAGCTTCTT+CGG | - | chr2_2:5281987-5282006 | Msa0232990:intron | 35.0% | |
| TAAAGTTCAGTACTTCTGTG+TGG | + | chr2_2:5282139-5282158 | None:intergenic | 35.0% | |
| AATCAAAGTGAGAAGAGGTA+TGG | - | chr2_2:5282158-5282177 | Msa0232990:intron | 35.0% | |
| CACAAGAGATATCAGTAGAA+AGG | - | chr2_2:5282193-5282212 | Msa0232990:intron | 35.0% | |
| AATGTCTCAACTCTTCTAAG+TGG | - | chr2_2:5282338-5282357 | Msa0232990:CDS | 35.0% | |
| AAGCAAAACGTGCATGTATT+TGG | + | chr2_2:5282542-5282561 | None:intergenic | 35.0% | |
| GAAAGTCTTCGTAGCATTAT+AGG | - | chr2_2:5282599-5282618 | Msa0232990:CDS | 35.0% | |
| TCTTCGTAGCATTATAGGTA+TGG | - | chr2_2:5282604-5282623 | Msa0232990:CDS | 35.0% | |
| ! | AGGGTACTCTTGTAGAGTTA+AGG | + | chr2_2:5281908-5281927 | None:intergenic | 40.0% |
| AGCTCTCGTTTGAATAGTGT+AGG | + | chr2_2:5281983-5282002 | None:intergenic | 40.0% | |
| TGATATTGACGACCCTTCTT+TGG | - | chr2_2:5282049-5282068 | Msa0232990:intron | 40.0% | |
| ! | ACCCTTCTTTGGTTTCACAA+GGG | - | chr2_2:5282060-5282079 | Msa0232990:intron | 40.0% |
| ACCCTTGTGAAACCAAAGAA+GGG | + | chr2_2:5282064-5282083 | None:intergenic | 40.0% | |
| AACCCTTGTGAAACCAAAGA+AGG | + | chr2_2:5282065-5282084 | None:intergenic | 40.0% | |
| ! | AAGTGAGAAGAGGTATGGAA+TGG | - | chr2_2:5282163-5282182 | Msa0232990:intron | 40.0% |
| ! | AAGGTGTTTGGATGCTCAAT+TGG | - | chr2_2:5282223-5282242 | Msa0232990:CDS | 40.0% |
| ! | CTAGTGAGTCTGAAATTGGT+AGG | + | chr2_2:5282429-5282448 | None:intergenic | 40.0% |
| CTACCAATTTCAGACTCACT+AGG | - | chr2_2:5282427-5282446 | Msa0232990:CDS | 40.0% | |
| ! | TGTCCTAGTGAGTCTGAAAT+TGG | + | chr2_2:5282433-5282452 | None:intergenic | 40.0% |
| ATGTATCTGATCCACACGTT+TGG | - | chr2_2:5282515-5282534 | Msa0232990:CDS | 40.0% | |
| ATGTATTTGGTCCAAACGTG+TGG | + | chr2_2:5282529-5282548 | None:intergenic | 40.0% | |
| ! | AAACCCCCGTGTTTAACTTA+GGG | + | chr2_2:5282649-5282668 | None:intergenic | 40.0% |
| ! | TAAACCCCCGTGTTTAACTT+AGG | + | chr2_2:5282650-5282669 | None:intergenic | 40.0% |
| !!! | TTTTTTGTGGTACAGCTGCT+TGG | - | chr2_2:5282856-5282875 | Msa0232990:CDS | 40.0% |
| TCCTGCAGAAGTTTACTAAG+TGG | - | chr2_2:5282888-5282907 | Msa0232990:CDS | 40.0% | |
| ACTAAGTGGCATAACTGTTG+CGG | - | chr2_2:5282902-5282921 | Msa0232990:CDS | 40.0% | |
| ! | AGGGTACTCTTGTAGAGTTA+AGG | + | chr2_2:5281908-5281927 | None:intergenic | 40.0% |
| AGCTCTCGTTTGAATAGTGT+AGG | + | chr2_2:5281983-5282002 | None:intergenic | 40.0% | |
| TGATATTGACGACCCTTCTT+TGG | - | chr2_2:5282049-5282068 | Msa0232990:intron | 40.0% | |
| ! | ACCCTTCTTTGGTTTCACAA+GGG | - | chr2_2:5282060-5282079 | Msa0232990:intron | 40.0% |
| ACCCTTGTGAAACCAAAGAA+GGG | + | chr2_2:5282064-5282083 | None:intergenic | 40.0% | |
| AACCCTTGTGAAACCAAAGA+AGG | + | chr2_2:5282065-5282084 | None:intergenic | 40.0% | |
| ! | AAGTGAGAAGAGGTATGGAA+TGG | - | chr2_2:5282163-5282182 | Msa0232990:intron | 40.0% |
| ! | AAGGTGTTTGGATGCTCAAT+TGG | - | chr2_2:5282223-5282242 | Msa0232990:CDS | 40.0% |
| ! | CTAGTGAGTCTGAAATTGGT+AGG | + | chr2_2:5282429-5282448 | None:intergenic | 40.0% |
| CTACCAATTTCAGACTCACT+AGG | - | chr2_2:5282427-5282446 | Msa0232990:CDS | 40.0% | |
| ! | TGTCCTAGTGAGTCTGAAAT+TGG | + | chr2_2:5282433-5282452 | None:intergenic | 40.0% |
| ATGTATCTGATCCACACGTT+TGG | - | chr2_2:5282515-5282534 | Msa0232990:CDS | 40.0% | |
| ATGTATTTGGTCCAAACGTG+TGG | + | chr2_2:5282529-5282548 | None:intergenic | 40.0% | |
| ! | AAACCCCCGTGTTTAACTTA+GGG | + | chr2_2:5282649-5282668 | None:intergenic | 40.0% |
| ! | TAAACCCCCGTGTTTAACTT+AGG | + | chr2_2:5282650-5282669 | None:intergenic | 40.0% |
| !!! | TTTTTTGTGGTACAGCTGCT+TGG | - | chr2_2:5282856-5282875 | Msa0232990:CDS | 40.0% |
| TCCTGCAGAAGTTTACTAAG+TGG | - | chr2_2:5282888-5282907 | Msa0232990:CDS | 40.0% | |
| ACTAAGTGGCATAACTGTTG+CGG | - | chr2_2:5282902-5282921 | Msa0232990:CDS | 40.0% | |
| GCAAGGCAGAAAAAGCCATT+TGG | + | chr2_2:5281657-5281676 | None:intergenic | 45.0% | |
| !! | TCAAACGTCGTTGATAGCCA+TGG | - | chr2_2:5281786-5281805 | Msa0232990:intron | 45.0% |
| AGACATGCAAGGAACAGCAA+CGG | - | chr2_2:5282010-5282029 | Msa0232990:intron | 45.0% | |
| ! | GACCCTTCTTTGGTTTCACA+AGG | - | chr2_2:5282059-5282078 | Msa0232990:intron | 45.0% |
| CAAGGGTTATCCTTCATGAG+TGG | - | chr2_2:5282077-5282096 | Msa0232990:intron | 45.0% | |
| TCAGTAGAAAGGACTGCAGA+AGG | - | chr2_2:5282204-5282223 | Msa0232990:intron | 45.0% | |
| !! | AAAGGACTGCAGAAGGTGTT+TGG | - | chr2_2:5282211-5282230 | Msa0232990:intron | 45.0% |
| !! | GTGGTGAGTCCTTTGACTTT+TGG | - | chr2_2:5282357-5282376 | Msa0232990:CDS | 45.0% |
| TTCGCCCCCTAAGTTAAACA+CGG | - | chr2_2:5282640-5282659 | Msa0232990:CDS | 45.0% | |
| ! | AACCCCCGTGTTTAACTTAG+GGG | + | chr2_2:5282648-5282667 | None:intergenic | 45.0% |
| GCCACTTAGTAAACTTCTGC+AGG | + | chr2_2:5282892-5282911 | None:intergenic | 45.0% | |
| GCAAGGCAGAAAAAGCCATT+TGG | + | chr2_2:5281657-5281676 | None:intergenic | 45.0% | |
| !! | TCAAACGTCGTTGATAGCCA+TGG | - | chr2_2:5281786-5281805 | Msa0232990:intron | 45.0% |
| AGACATGCAAGGAACAGCAA+CGG | - | chr2_2:5282010-5282029 | Msa0232990:intron | 45.0% | |
| ! | GACCCTTCTTTGGTTTCACA+AGG | - | chr2_2:5282059-5282078 | Msa0232990:intron | 45.0% |
| CAAGGGTTATCCTTCATGAG+TGG | - | chr2_2:5282077-5282096 | Msa0232990:intron | 45.0% | |
| TCAGTAGAAAGGACTGCAGA+AGG | - | chr2_2:5282204-5282223 | Msa0232990:intron | 45.0% | |
| !! | AAAGGACTGCAGAAGGTGTT+TGG | - | chr2_2:5282211-5282230 | Msa0232990:intron | 45.0% |
| !! | GTGGTGAGTCCTTTGACTTT+TGG | - | chr2_2:5282357-5282376 | Msa0232990:CDS | 45.0% |
| TTCGCCCCCTAAGTTAAACA+CGG | - | chr2_2:5282640-5282659 | Msa0232990:CDS | 45.0% | |
| ! | AACCCCCGTGTTTAACTTAG+GGG | + | chr2_2:5282648-5282667 | None:intergenic | 45.0% |
| GCCACTTAGTAAACTTCTGC+AGG | + | chr2_2:5282892-5282911 | None:intergenic | 45.0% | |
| AGCTTCTTCGGAGACATGCA+AGG | - | chr2_2:5281999-5282018 | Msa0232990:intron | 50.0% | |
| AGCTGCTACTCCACTCATGA+AGG | + | chr2_2:5282090-5282109 | None:intergenic | 50.0% | |
| TCGCCCCCTAAGTTAAACAC+GGG | - | chr2_2:5282641-5282660 | Msa0232990:CDS | 50.0% | |
| ! | ACCCCCGTGTTTAACTTAGG+GGG | + | chr2_2:5282647-5282666 | None:intergenic | 50.0% |
| TTTGTGGTACAGCTGCTTGG+AGG | - | chr2_2:5282859-5282878 | Msa0232990:CDS | 50.0% | |
| AGCTTCTTCGGAGACATGCA+AGG | - | chr2_2:5281999-5282018 | Msa0232990:intron | 50.0% | |
| AGCTGCTACTCCACTCATGA+AGG | + | chr2_2:5282090-5282109 | None:intergenic | 50.0% | |
| TCGCCCCCTAAGTTAAACAC+GGG | - | chr2_2:5282641-5282660 | Msa0232990:CDS | 50.0% | |
| ! | ACCCCCGTGTTTAACTTAGG+GGG | + | chr2_2:5282647-5282666 | None:intergenic | 50.0% |
| TTTGTGGTACAGCTGCTTGG+AGG | - | chr2_2:5282859-5282878 | Msa0232990:CDS | 50.0% | |
| CGCCCCCTAAGTTAAACACG+GGG | - | chr2_2:5282642-5282661 | Msa0232990:CDS | 55.0% | |
| GCCCCCTAAGTTAAACACGG+GGG | - | chr2_2:5282643-5282662 | Msa0232990:CDS | 55.0% | |
| CGCCCCCTAAGTTAAACACG+GGG | - | chr2_2:5282642-5282661 | Msa0232990:CDS | 55.0% | |
| GCCCCCTAAGTTAAACACGG+GGG | - | chr2_2:5282643-5282662 | Msa0232990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5281618 | 5282953 | 5281618 | ID=Msa0232990;Name=Msa0232990 |
| chr2_2 | mRNA | 5281618 | 5282953 | 5281618 | ID=Msa0232990-mRNA-1;Parent=Msa0232990;Name=Msa0232990-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|274 |
| chr2_2 | exon | 5282212 | 5282953 | 5282212 | ID=Msa0232990-mRNA-1:exon:2297;Parent=Msa0232990-mRNA-1 |
| chr2_2 | exon | 5281618 | 5281700 | 5281618 | ID=Msa0232990-mRNA-1:exon:2296;Parent=Msa0232990-mRNA-1 |
| chr2_2 | CDS | 5282212 | 5282953 | 5282212 | ID=Msa0232990-mRNA-1:cds;Parent=Msa0232990-mRNA-1 |
| chr2_2 | CDS | 5281618 | 5281700 | 5281618 | ID=Msa0232990-mRNA-1:cds;Parent=Msa0232990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
