AlfalfaGEDB | Msa0555920

M. sativa cultivar zhongmu-4 / Msa0555920

KEGG: -
GO: -
PFAM: PF01370.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555920	XP_013456728.1	97.167	353	10	0	1	353	5	357	0.0	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555920	sp\|Q5XLY0\|ANR_GINBI	46.176	340	160	6	13	341	4	331	4.85e-92	281

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555920	A0A072ULV1	97.167	353	10	0	1	353	5	357	0.0	718

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa0555920	0.884394	1.990376e-71	-8.615850e-47
Msa0013040	Msa0555920	0.803926	2.761354e-49	-8.615850e-47
Msa0014590	Msa0555920	0.821887	3.179536e-53	-8.615850e-47
Msa0025570	Msa0555920	0.810596	1.065624e-50	-8.615850e-47
Msa0027860	Msa0555920	0.861798	7.963510e-64	-8.615850e-47
Msa0048950	Msa0555920	0.806737	7.112303e-50	-8.615850e-47
Msa0059880	Msa0555920	0.855300	6.919996e-62	-8.615850e-47
Msa0062010	Msa0555920	0.801335	9.450562e-49	-8.615850e-47
Msa0063540	Msa0555920	0.820763	5.777070e-53	-8.615850e-47
Msa0064990	Msa0555920	0.804316	2.290304e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555920	MtrunA17_Chr4g0042101	96.884	353	10	1	1	353	5	356	0.0	712
Msa0555920	MtrunA17_Chr1g0155431	42.982	342	160	8	21	351	9	326	2.71e-92	279
Msa0555920	MtrunA17_Chr1g0155411	41.860	344	165	8	21	353	9	328	1.40e-86	265
Msa0555920	MtrunA17_Chr7g0245741	38.824	340	182	8	18	350	6	326	2.72e-76	238
Msa0555920	MtrunA17_Chr4g0048961	38.788	330	182	6	19	341	13	329	2.50e-73	231
Msa0555920	MtrunA17_Chr7g0245731	37.647	340	186	7	18	350	56	376	1.24e-72	230
Msa0555920	MtrunA17_Chr7g0245691	37.830	341	188	9	18	350	6	330	3.40e-72	227
Msa0555920	MtrunA17_Chr7g0245641	37.537	341	188	7	18	350	43	366	4.21e-72	228
Msa0555920	MtrunA17_Chr7g0245671	38.235	340	187	9	18	350	6	329	3.79e-70	222
Msa0555920	MtrunA17_Chr7g0245631	34.706	340	196	7	18	350	6	326	3.92e-68	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555920	AT4G27250.1	59.451	328	130	3	17	341	10	337	6.57e-138	396
Msa0555920	AT4G27250.2	58.232	328	124	4	17	341	10	327	1.15e-131	380
Msa0555920	AT5G42800.1	41.840	337	171	7	21	351	9	326	4.60e-87	268
Msa0555920	AT4G35420.1	40.118	339	180	9	18	353	6	324	6.88e-73	229
Msa0555920	AT1G09510.1	37.920	327	177	10	21	342	9	314	7.65e-65	208
Msa0555920	AT1G61720.1	37.500	328	193	4	17	341	10	328	4.15e-64	207
Msa0555920	AT1G51410.1	37.425	334	185	7	21	350	10	323	5.96e-62	201
Msa0555920	AT1G66800.1	36.145	332	182	8	21	345	9	317	2.15e-60	197
Msa0555920	AT1G09490.1	35.241	332	189	8	21	345	9	321	1.04e-59	195
Msa0555920	AT2G45400.1	36.337	344	193	7	17	350	37	364	2.43e-58	193

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Find 68 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACAAACTGACACTGTG+TGG	0.677088	4_1:-53928964	Msa0555920:CDS
AACATGCTAAAGCAGAAGGT+AGG	0.675020	4_1:-53928136	Msa0555920:CDS
AAGAAATGGAGGAAGCAATG+AGG	0.616615	4_1:-53934608	None:intergenic
AAGACTAGTAGCTAAACAGA+AGG	0.645126	4_1:+53927799	None:intergenic
AAGCTGTACACTGCCTAACT+TGG	0.485427	4_1:-53928096	Msa0555920:CDS
AAGGTAAATAACCATAATCT+AGG	0.489051	4_1:+53927818	None:intergenic
AATGGAGGAAGCAATGAGGA+TGG	0.563316	4_1:-53934604	Msa0555920:CDS
ACACAGTGTCAGTTTGTATT+TGG	0.230014	4_1:+53928966	None:intergenic
ACACCTCCTGTCATTGTGGA+AGG	0.512956	4_1:-53929417	Msa0555920:CDS
ACAGGTGCCACAGGGTATAT+TGG	0.354757	4_1:-53934537	Msa0555920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTTCATCAAAATTGAATGT+AGG	+	chr4_1:53928144-53928163	None:intergenic	30.0%
ACAATTTGATGCACAAGATA+TGG	-	chr4_1:53928192-53928211	Msa0555920:CDS	30.0%
AAGTAAGGACTAAACTTACA+AGG	+	chr4_1:53928994-53929013	None:intergenic	30.0%
AAGTAAGGACTAAACTTACA+AGG	-	chr4_1:53928994-53929013	Msa0555920:CDS	30.0%
AAGAAAAAAAGTGGCGTAAT+TGG	-	chr4_1:53929122-53929141	Msa0555920:CDS	30.0%
TATAGTAGTACTACTACTTG+TGG	-	chr4_1:53929718-53929737	Msa0555920:intron	30.0%
TAAAAGATGAAATGATGCCA+CGG	+	chr4_1:53929745-53929764	None:intergenic	30.0%
AAGTAAGGACTAAACTTACA+AGG	+	chr4_1:53928994-53929013	None:intergenic	30.0%
CAGGGCAAAAAAACAAAATT+AGG	+	chr4_1:53930570-53930589	None:intergenic	30.0%
CAGGGCAAAAAAACAAAATT+AGG	-	chr4_1:53930570-53930589	Msa0555920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	53927810	53934625	53927810	ID=Msa0555920;Name=Msa0555920
chr4_1	mRNA	53927810	53934625	53927810	ID=Msa0555920-mRNA-1;Parent=Msa0555920;Name=Msa0555920-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|6\|0\|353
chr4_1	exon	53934472	53934625	53934472	ID=Msa0555920-mRNA-1:exon:15819;Parent=Msa0555920-mRNA-1
chr4_1	exon	53929282	53929449	53929282	ID=Msa0555920-mRNA-1:exon:15818;Parent=Msa0555920-mRNA-1
chr4_1	exon	53928943	53929160	53928943	ID=Msa0555920-mRNA-1:exon:15817;Parent=Msa0555920-mRNA-1
chr4_1	exon	53928695	53928854	53928695	ID=Msa0555920-mRNA-1:exon:15816;Parent=Msa0555920-mRNA-1
chr4_1	exon	53928053	53928263	53928053	ID=Msa0555920-mRNA-1:exon:15815;Parent=Msa0555920-mRNA-1
chr4_1	exon	53927810	53927960	53927810	ID=Msa0555920-mRNA-1:exon:15814;Parent=Msa0555920-mRNA-1
chr4_1	CDS	53934472	53934625	53934472	ID=Msa0555920-mRNA-1:cds;Parent=Msa0555920-mRNA-1
chr4_1	CDS	53929282	53929449	53929282	ID=Msa0555920-mRNA-1:cds;Parent=Msa0555920-mRNA-1
chr4_1	CDS	53928943	53929160	53928943	ID=Msa0555920-mRNA-1:cds;Parent=Msa0555920-mRNA-1
chr4_1	CDS	53928695	53928854	53928695	ID=Msa0555920-mRNA-1:cds;Parent=Msa0555920-mRNA-1
chr4_1	CDS	53928053	53928263	53928053	ID=Msa0555920-mRNA-1:cds;Parent=Msa0555920-mRNA-1
chr4_1	CDS	53927810	53927960	53927810	ID=Msa0555920-mRNA-1:cds;Parent=Msa0555920-mRNA-1

Gene Sequence

>Msa0555920

ATGGAGGAAGCAATGAGGATGGTGAGAAGCAGTGTTCAAATTGTTCCTACTGCCAAATATTGTGTTACAGGTGCCACAGGGTATATTGGTTCATGGCTTGTTGAAGCTCTTCTTCAAAGAGGTTGCACCGTTCATGCTACTGTCAGAGATCCTGAAAAGTCGTTACACCTCCTGTCATTGTGGAAGGGTGGTGACCAATTGAGATTTTTCCGCGCTGATTTGCACGAAGAAGGAAGCTTCGATGAGGCAGTAAAAGGATGTGATGGTGTGTTCCATGTTGCAGCTTCAATGCAATTCAATATTAATGAGAAAGAAAACATTGAGAACTTTGTTCAAACAAATATAATTGACCCTGCAATCAAAGGAACCATAAACCTGCTCAAATCTTGCTTGAAATCCAATTCTGTGAAAAGGGTTGTTTTCACATCTTCTATAAGTACTATTACTGCTAAAGATAGCAATGGAAAGTGGAAACCTATTGTTGATGAATCTTGCCAAATACAAACTGACACTGTGTGGAATACACAACCAAGTGGATGGGTTTATGCACTTTCAAAGCTTCTCACAGAAGAAGCAGCATTTAAATTTGCTAAAGATAATGGGATTGATCTTGTTTCGGTTATAACAAGCACTGTTGCAGGCCCGTTTTTCACTGCTAATGTACCTTCAAGTGTTAAAGTTCTGCTGTCCTCACTAACAGGTGAAACTGAAAACTACAAGATATTATCTGCTGTAAATGCACGAATGGGGTCAATTGCTTTAGTTCACATTGAAGATATATGCAATGCTCACATATTCTTGATGGAACATGCTAAAGCAGAAGGTAGGTACATATGCAGCACACAAAGCTGTACACTGCCTAACTTGGCAGCTCTTGTTTCCAAAGAGTATTCTAATCCAACTACGCTAAGCAGGAAGAGTCAGAAATATGACAAGGTTCCTACTGAAATTTCCTCAAAGAAGCTAAAAGATTTGGGTTTCAGTTTCAAGCATAGCCTTGAAGAAATAGTACATCAAACAATTATGTGTTGCCTAGATTATGGTTATTTACCTTCTGTTTAG

Protein sequence

>Msa0555920

MEEAMRMVRSSVQIVPTAKYCVTGATGYIGSWLVEALLQRGCTVHATVRDPEKSLHLLSLWKGGDQLRFFRADLHEEGSFDEAVKGCDGVFHVAASMQFNINEKENIENFVQTNIIDPAIKGTINLLKSCLKSNSVKRVVFTSSISTITAKDSNGKWKPIVDESCQIQTDTVWNTQPSGWVYALSKLLTEEAAFKFAKDNGIDLVSVITSTVAGPFFTANVPSSVKVLLSSLTGETENYKILSAVNARMGSIALVHIEDICNAHIFLMEHAKAEGRYICSTQSCTLPNLAALVSKEYSNPTTLSRKSQKYDKVPTEISSKKLKDLGFSFKHSLEEIVHQTIMCCLDYGYLPSV*