AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350870 MtrunA17_Chr7g0216891 97.418 581 12 3 1 578 4 584 0.0 1157
Msa1350870 MtrunA17_Chr4g0060271 39.446 578 258 22 34 560 68 604 4.22e-80 263
Msa1350870 MtrunA17_Chr4g0051181 40.994 322 88 9 197 483 225 479 2.19e-50 181
Msa1350870 MtrunA17_Chr3g0099641 36.552 290 114 4 188 477 225 444 1.61e-48 175
Msa1350870 MtrunA17_Chr2g0322391 29.980 507 234 13 11 478 132 556 4.43e-47 174
Msa1350870 MtrunA17_Chr7g0270831 71.429 98 28 0 194 291 195 292 5.28e-47 170
Msa1350870 MtrunA17_Chr2g0288871 39.600 250 128 6 28 274 135 364 6.52e-45 167
Msa1350870 MtrunA17_Chr4g0075201 35.734 361 152 11 42 391 126 417 2.35e-44 164
Msa1350870 MtrunA17_Chr2g0302391 34.615 312 120 9 188 489 185 422 4.93e-40 151
Msa1350870 MtrunA17_Chr4g0025051 38.532 218 95 3 166 383 292 470 4.65e-39 151
Msa1350870 MtrunA17_Chr4g0025061 46.853 143 70 1 166 308 317 453 4.06e-38 149
Msa1350870 MtrunA17_Chr4g0024391 44.056 143 74 2 166 308 186 322 2.20e-34 136
Msa1350870 MtrunA17_Chr4g0001361 56.098 82 34 2 194 273 139 220 5.14e-25 105
Msa1350870 MtrunA17_Chr1g0150281 53.333 75 35 0 198 272 123 197 3.86e-23 99.8
Msa1350870 MtrunA17_Chr3g0136961 61.017 59 23 0 214 272 137 195 4.10e-23 99.8
Msa1350870 MtrunA17_Chr2g0333851 60.000 60 24 0 214 273 168 227 2.55e-22 98.2
Msa1350870 MtrunA17_Chr1g0150271 41.228 114 60 3 166 272 45 158 2.76e-22 96.7
Msa1350870 MtrunA17_Chr5g0432161 55.000 80 31 2 197 272 399 477 3.89e-22 100
Msa1350870 MtrunA17_Chr5g0432161 52.542 59 26 2 215 273 244 300 1.58e-12 70.1
Msa1350870 MtrunA17_Chr3g0106491 56.338 71 30 1 202 272 352 421 5.78e-22 99.8
Msa1350870 MtrunA17_Chr3g0106491 50.794 63 29 2 215 277 198 258 5.56e-13 71.6
Msa1350870 MtrunA17_Chr7g0243891 49.412 85 42 1 199 283 358 441 8.41e-22 99.4
Msa1350870 MtrunA17_Chr7g0243891 53.448 58 25 2 216 273 217 272 6.48e-12 68.2
Msa1350870 MtrunA17_Chr5g0445311 44.231 104 56 2 177 280 327 428 1.30e-21 98.6
Msa1350870 MtrunA17_Chr5g0445311 52.542 59 26 2 215 273 200 256 1.46e-11 67.0
Msa1350870 MtrunA17_Chr3g0101131 38.462 130 61 3 154 272 350 471 1.50e-21 98.6
Msa1350870 MtrunA17_Chr3g0101131 50.847 59 27 2 215 273 243 299 3.29e-11 66.2
Msa1350870 MtrunA17_Chr7g0249311 35.766 137 77 3 192 318 366 501 4.71e-21 97.4
Msa1350870 MtrunA17_Chr5g0418191 42.276 123 68 3 152 272 255 376 5.36e-21 95.9
Msa1350870 MtrunA17_Chr5g0418191 50.746 67 28 4 209 274 146 208 5.30e-12 68.2
Msa1350870 MtrunA17_Chr3g0079691 47.917 96 47 2 202 295 482 576 6.32e-21 97.1
Msa1350870 MtrunA17_Chr3g0079691 47.826 69 33 3 205 273 271 336 1.37e-11 67.4
Msa1350870 MtrunA17_Chr7g0249301 47.674 86 41 2 192 274 266 350 6.97e-21 94.7
Msa1350870 MtrunA17_Chr4g0004911 50.649 77 37 1 198 274 319 394 1.10e-20 95.5
Msa1350870 MtrunA17_Chr4g0004911 51.724 58 27 1 216 273 185 241 7.87e-14 74.3
Msa1350870 MtrunA17_Chr2g0294231 50.649 77 37 1 202 278 190 265 1.13e-20 94.4
Msa1350870 MtrunA17_Chr4g0042831 39.098 133 69 4 148 272 206 334 4.17e-20 92.8
Msa1350870 MtrunA17_Chr1g0150801 51.389 72 34 1 202 273 89 159 4.72e-20 87.4
Msa1350870 MtrunA17_Chr7g0218081 36.111 144 71 4 149 272 324 466 1.15e-19 92.4
Msa1350870 MtrunA17_Chr7g0218081 43.023 86 46 3 187 272 201 283 2.28e-11 66.6
Msa1350870 MtrunA17_Chr4g0051881 37.069 116 68 2 202 313 165 279 3.08e-19 89.4
Msa1350870 MtrunA17_Chr7g0224801 46.914 81 40 2 206 286 86 163 3.85e-19 85.1
Msa1350870 MtrunA17_Chr4g0074001 50.000 80 39 1 193 272 337 415 8.69e-19 89.7
Msa1350870 MtrunA17_Chr7g0263531 51.948 77 34 2 203 277 349 424 8.94e-19 89.4
Msa1350870 MtrunA17_Chr7g0263531 42.424 99 51 5 210 306 185 279 2.71e-12 68.9
Msa1350870 MtrunA17_Chr1g0194481 43.000 100 55 2 202 300 145 243 9.05e-19 87.8
Msa1350870 MtrunA17_Chr7g0270191 38.679 106 56 2 185 282 107 211 1.04e-18 87.0
Msa1350870 MtrunA17_Chr5g0447701 52.113 71 33 1 202 272 239 308 1.27e-18 88.2
Msa1350870 MtrunA17_Chr4g0068541 40.171 117 54 3 201 315 194 296 1.32e-18 88.6
Msa1350870 MtrunA17_Chr7g0270051 50.000 74 34 1 215 288 53 123 2.34e-18 85.5
Msa1350870 MtrunA17_Chr5g0401821 54.412 68 29 1 210 277 196 261 3.16e-18 85.1
Msa1350870 MtrunA17_Chr4g0053281 57.627 59 25 0 216 274 267 325 4.73e-18 85.9
Msa1350870 MtrunA17_Chr1g0147881 46.988 83 36 2 200 276 243 323 9.77e-18 84.7
Msa1350870 MtrunA17_Chr5g0443131 46.914 81 42 1 202 282 144 223 2.15e-17 83.2
Msa1350870 MtrunA17_Chr8g0386241 40.909 88 48 3 194 281 85 168 2.53e-17 80.1
Msa1350870 MtrunA17_Chr8g0383251 40.449 89 50 2 202 288 95 182 4.63e-17 79.7
Msa1350870 MtrunA17_Chr5g0419241 61.404 57 22 0 187 243 49 105 5.04e-17 77.0
Msa1350870 MtrunA17_Chr1g0184691 56.140 57 25 0 216 272 294 350 5.16e-17 82.8
Msa1350870 MtrunA17_Chr8g0379461 48.000 75 38 1 205 279 67 140 1.02e-16 80.1
Msa1350870 MtrunA17_Chr8g0335811 35.659 129 76 3 150 272 83 210 1.21e-16 79.3
Msa1350870 MtrunA17_Chr7g0228941 45.238 84 38 2 195 272 28 109 1.29e-16 76.6
Msa1350870 MtrunA17_Chr7g0248721 50.000 72 34 2 202 273 128 197 1.38e-16 79.0
Msa1350870 MtrunA17_Chr3g0129361 47.887 71 36 1 202 272 131 200 1.50e-16 79.0
Msa1350870 MtrunA17_Chr1g0188941 54.237 59 26 1 214 272 50 107 1.74e-16 75.9
Msa1350870 MtrunA17_Chr2g0293481 46.667 75 40 0 216 290 268 342 2.00e-16 82.4
Msa1350870 MtrunA17_Chr3g0139021 48.235 85 33 3 200 275 295 377 3.76e-16 80.9
Msa1350870 MtrunA17_Chr5g0418781 47.297 74 38 1 199 272 108 180 5.14e-16 78.6
Msa1350870 MtrunA17_Chr4g0071521 43.678 87 41 2 200 280 226 310 5.28e-16 79.3
Msa1350870 MtrunA17_Chr8g0383351 52.381 63 29 1 210 272 155 216 5.81e-16 77.8
Msa1350870 MtrunA17_Chr3g0129321 46.479 71 37 1 202 272 105 174 6.44e-16 76.6
Msa1350870 MtrunA17_Chr7g0248691 40.659 91 51 1 198 285 134 224 1.63e-15 78.2
Msa1350870 MtrunA17_Chr8g0348311 40.659 91 51 1 198 285 135 225 2.07e-15 77.8
Msa1350870 MtrunA17_Chr2g0289181 39.000 100 54 1 216 308 15 114 2.72e-15 75.5
Msa1350870 MtrunA17_Chr2g0284321 51.667 60 29 0 215 274 35 94 3.36e-15 75.1
Msa1350870 MtrunA17_Chr7g0238921 48.611 72 35 2 202 272 110 180 4.61e-15 76.6
Msa1350870 MtrunA17_Chr2g0319961 45.946 74 40 0 206 279 71 144 7.27e-15 75.1
Msa1350870 MtrunA17_Chr8g0387501 38.372 86 53 0 213 298 127 212 2.16e-14 73.9
Msa1350870 MtrunA17_Chr6g0485431 48.649 74 36 2 202 274 141 213 8.57e-14 73.2
Msa1350870 MtrunA17_Chr1g0202461 41.304 92 49 2 186 272 227 318 7.32e-13 70.5
Msa1350870 MtrunA17_Chr5g0432071 48.276 58 28 2 215 272 104 159 1.05e-11 64.7
Msa1350870 MtrunA17_Chr8g0387981 45.205 73 37 2 200 270 118 189 2.54e-11 65.5
Msa1350870 MtrunA17_Chr3g0126391 44.595 74 38 2 199 270 118 190 2.55e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350870 AT5G15130.1 40.275 581 256 19 5 554 10 530 2.37e-82 268
Msa1350870 AT5G15130.2 41.144 542 234 18 44 554 1 488 3.50e-80 261
Msa1350870 AT1G18860.1 38.039 510 233 17 24 478 29 510 9.84e-68 229
Msa1350870 AT4G04450.2 38.439 346 162 11 33 361 11 322 7.04e-55 192
Msa1350870 AT4G04450.1 38.439 346 162 11 33 361 105 416 1.61e-53 191
Msa1350870 AT1G68150.1 42.913 254 108 6 43 296 100 316 3.01e-53 186
Msa1350870 AT1G69810.1 36.550 342 172 8 30 363 19 323 4.60e-46 167
Msa1350870 AT1G62300.1 36.697 327 147 9 42 361 162 435 6.53e-42 159
Msa1350870 AT4G01720.1 38.750 240 93 9 43 274 105 298 2.62e-40 153
Msa1350870 AT4G22070.4 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1350870 AT4G22070.3 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1350870 AT4G22070.2 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1350870 AT4G22070.1 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1350870 AT1G69810.2 39.033 269 119 8 103 363 34 265 3.68e-36 138
Msa1350870 AT4G31800.2 66.667 60 20 0 213 272 109 168 2.99e-25 105
Msa1350870 AT4G31800.1 66.667 60 20 0 213 272 174 233 3.64e-25 106
Msa1350870 AT2G25000.2 63.636 66 23 1 208 272 95 160 5.44e-24 101
Msa1350870 AT2G25000.4 63.636 66 23 1 208 272 95 160 5.44e-24 101
Msa1350870 AT2G25000.3 63.636 66 23 1 208 272 117 182 9.63e-24 100
Msa1350870 AT2G25000.1 63.636 66 23 1 208 272 138 203 1.13e-23 101
Msa1350870 AT1G80840.1 53.333 75 35 0 200 274 131 205 1.88e-23 101
Msa1350870 AT5G56270.1 44.954 109 57 2 202 310 474 579 1.07e-22 103
Msa1350870 AT1G29860.1 34.783 161 96 4 173 330 94 248 1.69e-22 98.2
Msa1350870 AT2G38470.1 42.188 128 60 4 202 317 349 474 2.49e-22 101
Msa1350870 AT2G38470.1 51.724 58 26 2 216 273 185 240 5.75e-12 68.9
Msa1350870 AT4G26640.5 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1350870 AT4G26640.5 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1350870 AT4G26640.6 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1350870 AT4G26640.6 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1350870 AT4G26640.4 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1350870 AT4G26640.4 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1350870 AT4G26640.3 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1350870 AT4G26640.3 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1350870 AT4G26640.7 37.908 153 72 5 191 328 316 460 1.60e-21 98.6
Msa1350870 AT4G26640.7 46.377 69 33 3 207 273 161 227 5.46e-11 65.9
Msa1350870 AT4G26640.1 37.908 153 72 5 191 328 284 428 1.66e-21 98.6
Msa1350870 AT4G26640.1 46.377 69 33 3 207 273 129 195 5.43e-11 65.5
Msa1350870 AT5G49520.1 36.567 134 68 3 199 318 205 335 1.69e-21 97.4
Msa1350870 AT4G26640.2 37.908 153 72 5 191 328 356 500 2.42e-21 98.2
Msa1350870 AT4G26640.2 46.377 69 33 3 207 273 201 267 6.32e-11 65.5
Msa1350870 AT5G41570.1 48.235 85 43 1 191 275 74 157 6.35e-21 90.9
Msa1350870 AT5G26170.1 34.667 150 77 4 139 272 25 169 8.12e-21 90.5
Msa1350870 AT1G13960.2 49.438 89 38 2 192 274 227 314 1.01e-20 94.7
Msa1350870 AT1G13960.2 51.562 64 28 3 209 272 71 131 3.58e-12 68.6
Msa1350870 AT1G13960.1 49.438 89 38 2 192 274 380 467 1.37e-20 95.9
Msa1350870 AT1G13960.1 51.562 64 28 3 209 272 224 284 2.75e-12 69.7
Msa1350870 AT2G46130.1 55.556 72 31 1 202 273 17 87 2.16e-20 87.0
Msa1350870 AT2G03340.1 39.394 132 46 4 202 332 402 500 2.19e-20 95.1
Msa1350870 AT2G03340.1 53.030 66 28 3 209 274 245 307 2.46e-13 73.2
Msa1350870 AT2G04880.2 49.412 85 38 2 194 274 258 341 2.50e-20 94.7
Msa1350870 AT2G04880.2 51.667 60 27 2 214 273 110 167 1.92e-12 70.1
Msa1350870 AT2G04880.1 49.412 85 38 2 194 274 282 365 3.11e-20 94.4
Msa1350870 AT2G04880.1 51.667 60 27 2 214 273 110 167 2.18e-12 70.1
Msa1350870 AT4G26440.1 32.510 243 132 11 164 397 325 544 3.50e-20 94.7
Msa1350870 AT1G64000.1 51.351 74 35 1 202 275 101 173 3.81e-20 89.4
Msa1350870 AT1G29280.1 48.810 84 42 1 196 279 56 138 4.06e-20 90.9
Msa1350870 AT1G55600.1 45.977 87 42 2 191 273 279 364 4.36e-20 94.0
Msa1350870 AT5G13080.1 47.297 74 38 1 202 275 54 126 5.04e-20 87.4
Msa1350870 AT3G01080.1 53.521 71 32 1 202 272 293 362 2.33e-19 91.3
Msa1350870 AT3G01080.2 53.521 71 32 1 202 272 331 400 2.49e-19 91.7
Msa1350870 AT4G18170.1 47.561 82 42 1 193 274 150 230 2.49e-19 89.7
Msa1350870 AT5G46350.1 42.105 95 54 1 202 296 170 263 4.30e-19 89.0
Msa1350870 AT5G07100.2 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1350870 AT5G07100.4 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1350870 AT5G07100.5 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1350870 AT5G07100.3 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1350870 AT2G23320.1 61.017 59 23 0 216 274 241 299 5.32e-19 88.6
Msa1350870 AT5G07100.1 52.000 75 35 1 198 272 217 290 6.53e-19 88.2
Msa1350870 AT4G30935.1 43.564 101 50 2 197 291 313 412 1.37e-18 89.4
Msa1350870 AT1G69310.4 51.351 74 35 1 199 272 131 203 1.86e-18 86.7
Msa1350870 AT1G69310.2 51.351 74 35 1 199 272 131 203 1.86e-18 86.7
Msa1350870 AT1G69310.1 51.351 74 35 1 199 272 131 203 1.86e-18 86.7
Msa1350870 AT2G47260.1 41.584 101 54 2 199 295 158 257 1.92e-18 87.4
Msa1350870 AT5G64810.1 47.887 71 36 1 202 272 97 166 2.19e-18 84.0
Msa1350870 AT2G30250.1 50.649 77 37 1 198 274 311 386 2.43e-18 87.8
Msa1350870 AT2G30590.1 50.000 80 32 2 200 273 294 371 7.08e-18 86.3
Msa1350870 AT3G04670.1 55.385 65 28 1 220 284 267 330 7.55e-18 85.5
Msa1350870 AT4G24240.1 45.349 86 43 1 200 281 262 347 1.37e-17 85.1
Msa1350870 AT5G28650.1 53.846 65 29 1 220 284 267 330 2.23e-17 84.0
Msa1350870 AT2G44745.1 49.296 71 35 1 202 272 132 201 2.25e-17 81.6
Msa1350870 AT2G37260.2 58.065 62 25 1 213 274 265 325 4.82e-17 83.2
Msa1350870 AT2G37260.2 54.386 57 24 2 216 272 84 138 1.50e-12 69.7
Msa1350870 AT2G37260.3 58.065 62 25 1 213 274 267 327 5.21e-17 83.2
Msa1350870 AT2G37260.3 54.386 57 24 2 216 272 86 140 1.49e-12 69.7
Msa1350870 AT2G37260.1 58.065 62 25 1 213 274 347 407 9.79e-17 83.2
Msa1350870 AT2G37260.1 54.386 57 24 2 216 272 166 220 2.01e-12 69.7
Msa1350870 AT4G31550.1 51.316 76 33 3 199 272 230 303 1.40e-16 81.6
Msa1350870 AT2G24570.1 45.545 101 47 4 199 297 227 321 1.47e-16 81.6
Msa1350870 AT4G31550.2 51.316 76 33 3 199 272 229 302 1.49e-16 81.6
Msa1350870 AT3G62340.1 50.000 72 35 1 202 273 105 175 3.01e-16 79.7
Msa1350870 AT4G39410.1 47.887 71 36 1 202 272 210 279 3.13e-16 80.1
Msa1350870 AT3G01970.1 46.479 71 37 1 202 272 52 121 4.84e-16 75.9
Msa1350870 AT1G30650.1 49.254 67 34 0 216 282 218 284 1.16e-15 80.1
Msa1350870 AT2G46130.2 51.389 72 30 2 202 273 17 83 1.73e-15 73.2
Msa1350870 AT3G58710.1 55.000 60 27 0 215 274 71 130 1.82e-15 77.4
Msa1350870 AT3G58710.2 55.000 60 27 0 215 274 70 129 2.04e-15 77.0
Msa1350870 AT2G34830.1 49.254 67 34 0 216 282 216 282 2.65e-15 79.0
Msa1350870 AT2G34830.2 49.254 67 34 0 216 282 225 291 3.14e-15 78.6
Msa1350870 AT4G01250.1 46.479 71 38 0 215 285 128 198 4.96e-15 76.6
Msa1350870 AT2G21900.1 46.667 60 31 1 214 273 108 166 2.25e-14 72.8
Msa1350870 AT5G52830.1 48.571 70 36 0 216 285 166 235 2.36e-14 75.1
Msa1350870 AT4G23550.1 42.857 77 44 0 214 290 139 215 4.56e-14 73.9
Msa1350870 AT4G31800.3 65.000 40 14 0 213 252 174 213 4.63e-14 72.4
Msa1350870 AT1G69310.3 47.297 74 34 2 199 272 131 199 1.31e-13 72.0
Msa1350870 AT5G43290.1 47.222 72 36 2 202 272 100 170 2.34e-13 71.2
Msa1350870 AT5G24110.1 35.833 120 69 4 155 270 55 170 1.94e-12 68.9
Msa1350870 AT5G45050.4 38.636 88 54 0 215 302 1041 1128 3.97e-12 70.1
Msa1350870 AT5G45050.1 37.000 100 59 1 215 310 1180 1279 4.12e-12 70.1
Msa1350870 AT5G45050.2 38.636 88 54 0 215 302 1152 1239 4.43e-12 69.7
Msa1350870 AT1G66560.1 47.761 67 33 1 206 270 94 160 6.90e-11 63.5
Msa1350870 AT2G40740.1 50.847 59 27 1 215 271 173 231 9.29e-11 63.5

Find 95 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATAATAACAATAAATT+AGG 0.135542 tig0011947:+38001 Msa1350870:CDS
CACAACAATTCCACATCTTT+TGG 0.160553 tig0011947:+37728 Msa1350870:CDS
AACAATTTGTTGAATCAAAA+TGG 0.181145 tig0011947:+38334 Msa1350870:CDS
TCTTTCTCTTTAGGTTTGTT+AGG 0.187408 tig0011947:-36467 None:intergenic
TCCATATCTTCTTTCTCTTT+AGG 0.253785 tig0011947:-36476 None:intergenic
GATGATATTGGTGTGAAATT+TGG 0.273603 tig0011947:-37971 None:intergenic
TTGTTGGAAACAAATTATTA+TGG 0.295644 tig0011947:-37844 None:intergenic
GCTTCTTTCTTATACTCATT+TGG 0.300183 tig0011947:-36428 None:intergenic
GTATATACCTGTTTCCTAAC+TGG 0.305967 tig0011947:-37266 None:intergenic
ACATGTCATCAGCACATCTT+TGG 0.314882 tig0011947:-37556 None:intergenic
AATTCTTCTGAGCTATTCAT+TGG 0.315815 tig0011947:-36566 None:intergenic
GAAGTTGAAGTTGAAGAAAA+AGG 0.324758 tig0011947:+36596 Msa1350870:CDS
GAAAATAGAGAGAATGGTTT+AGG 0.330212 tig0011947:+38265 Msa1350870:CDS
GGATGTCAATGGAGGAAATA+TGG 0.344144 tig0011947:+37176 Msa1350870:CDS
ACAATAATAACAATAAATTA+GGG 0.362140 tig0011947:+38002 Msa1350870:CDS
GCTGCAGTTTCGTCGATTGT+AGG 0.370957 tig0011947:+38211 Msa1350870:CDS
AGAGAGAATGGTTTAGGTGC+AGG 0.371097 tig0011947:+38271 Msa1350870:CDS
TCTTCAACTTCAACTTCCTT+TGG 0.371657 tig0011947:-36590 None:intergenic
CTTTCTCTTTAGGTTTGTTA+GGG 0.381231 tig0011947:-36466 None:intergenic
AACCCCTTCAAGGCAAGCTT+TGG 0.383268 tig0011947:+38132 Msa1350870:CDS
TGGATTAGACTCTAAATATA+TGG 0.384134 tig0011947:+36514 Msa1350870:CDS
GTGTTCTTGATTGTTCATAT+TGG 0.389663 tig0011947:-37793 None:intergenic
TCACACCAATATCATCCATT+TGG 0.393132 tig0011947:+37978 Msa1350870:CDS
TTGTTCCAAATGGATGATAT+TGG 0.395825 tig0011947:-37983 None:intergenic
GGAATGAAGAAATGTTGTTT+TGG 0.395896 tig0011947:-37815 None:intergenic
CTGCTCTTAGAGACAGAAAA+TGG 0.396322 tig0011947:-38445 None:intergenic
GCAGCATCAATGATGGTATC+AGG 0.396478 tig0011947:+37662 Msa1350870:CDS
AGCAATCAACTTCAACTTCA+TGG 0.396953 tig0011947:-35271 None:intergenic
ACCTAAAGAGAAAGAAGATA+TGG 0.399352 tig0011947:+36475 Msa1350870:CDS
TCAGCCAAAGCTTGCCTTGA+AGG 0.406538 tig0011947:-38136 None:intergenic
CAAGAAGAAAATAGAGAGAA+TGG 0.423211 tig0011947:+38259 Msa1350870:CDS
ATTGTTATTATTGTTCCAAA+TGG 0.426970 tig0011947:-37993 None:intergenic
GAGAGAATGGTTTAGGTGCA+GGG 0.431975 tig0011947:+38272 Msa1350870:CDS
GGAAACAAATTATTATGGTT+TGG 0.447828 tig0011947:-37839 None:intergenic
CAAGTTATCAAACCCCTTCA+AGG 0.448201 tig0011947:+38122 Msa1350870:CDS
TAGAGTCTAATCCAAGACTT+AGG 0.454455 tig0011947:-36505 None:intergenic
GTTAGGTCAAGAGTGATTGT+TGG 0.454975 tig0011947:-37860 None:intergenic
AAATTGTTTGAAACCATTTG+AGG 0.460922 tig0011947:-38319 None:intergenic
CAGCCAAAGCTTGCCTTGAA+GGG 0.463069 tig0011947:-38135 None:intergenic
TTGCACCAGCATGCCCAGTT+AGG 0.463809 tig0011947:+37252 Msa1350870:CDS
ATGGAAGTTAACCTAAGTCT+TGG 0.464788 tig0011947:+36494 Msa1350870:CDS
AGCATGCCCAGTTAGGAAAC+AGG 0.467255 tig0011947:+37259 Msa1350870:CDS
CGATAGTATGCTCTTGGACA+TGG 0.469854 tig0011947:-37221 None:intergenic
TTGATATTGTTAACAATGGA+TGG 0.469868 tig0011947:-38481 None:intergenic
ACTTGGTGAGTATCCTCAAA+TGG 0.474336 tig0011947:+38306 Msa1350870:CDS
ATAAGGATGAAGGAGAAGTT+AGG 0.476278 tig0011947:-37877 None:intergenic
TTGTTGAATCAAAATGGAAA+AGG 0.477286 tig0011947:+38340 Msa1350870:CDS
AACAAATTATTATGGTTTGG+TGG 0.478026 tig0011947:-37836 None:intergenic
TATGGACAAAAGATAGCAAA+AGG 0.482613 tig0011947:+37194 Msa1350870:CDS
GTGCAACGATAGTATGCTCT+TGG 0.484000 tig0011947:-37227 None:intergenic
AGCTATGTTTGATGATGATA+AGG 0.489640 tig0011947:-37894 None:intergenic
GAGACAGAAAATGGCAATGA+AGG 0.505559 tig0011947:-38436 None:intergenic
CAAACTAAAATGTGCTAATG+AGG 0.505687 tig0011947:+36202 Msa1350870:CDS
AAATGGAAAAGGATGTTTGA+AGG 0.506495 tig0011947:+38351 Msa1350870:CDS
ATCTTAATCACAACATATGA+AGG 0.508764 tig0011947:+37581 Msa1350870:CDS
AGATTATTTGGCGAAAATCT+CGG 0.509888 tig0011947:-37926 None:intergenic
TGTTTCCTAACTGGGCATGC+TGG 0.511634 tig0011947:-37257 None:intergenic
ACTCATTTGGACTTCTTCCA+AGG 0.530874 tig0011947:-36415 None:intergenic
TTCAGCTGCAGCATCAATGA+TGG 0.531666 tig0011947:+37655 Msa1350870:CDS
GCTATAACTGAGTGAAGACT+TGG 0.533345 tig0011947:-38187 None:intergenic
GAGTTTGTGTCACTTTGCCT+TGG 0.535145 tig0011947:+36398 Msa1350870:CDS
ATTGTTGATATTGTTAACAA+TGG 0.540285 tig0011947:-38485 None:intergenic
AATGGAAAAGGATGTTTGAA+GGG 0.540904 tig0011947:+38352 Msa1350870:CDS
GCAGGGTTGAATTTGAAACT+TGG 0.541526 tig0011947:+38289 Msa1350870:CDS
AACTCACCAACACAACTCAA+TGG 0.541569 tig0011947:+37752 Msa1350870:CDS
AAAATGTGCTAATGAGGAGA+TGG 0.542633 tig0011947:+36208 Msa1350870:CDS
TATATACCTGTTTCCTAACT+GGG 0.545205 tig0011947:-37265 None:intergenic
TCTTTCAAACAGATGAATGA+TGG 0.549199 tig0011947:+37155 Msa1350870:intron
TCTTCAATCTCTGAACTGCT+AGG 0.554571 tig0011947:-35227 None:intergenic
TTTAGACCATTGAGTTGTGT+TGG 0.558988 tig0011947:-37758 None:intergenic
CTCTAAATATATGGTACCAT+CGG 0.560748 tig0011947:+36523 Msa1350870:CDS
AAGGCAAAGTGACACAAACT+CGG 0.562482 tig0011947:-36396 None:intergenic
TGTGAAATTTGGTTGTTGTG+TGG 0.564092 tig0011947:-37960 None:intergenic
TTTGATGATGATAAGGATGA+AGG 0.564477 tig0011947:-37887 None:intergenic
AGCCAAAGCTTGCCTTGAAG+GGG 0.565025 tig0011947:-38134 None:intergenic
AGATGAATGATGGATGTCAA+TGG 0.566197 tig0011947:+37165 Msa1350870:intron
TGATTGCTCTACTGAACAAG+AGG 0.569404 tig0011947:+35286 Msa1350870:CDS
TGTCAAAGAAACGAAGCTGA+AGG 0.576917 tig0011947:-36298 None:intergenic
GCTGATGCTGTTACTTGAAG+AGG 0.585701 tig0011947:-37617 None:intergenic
ATATTGTTAACAATGGATGG+AGG 0.596810 tig0011947:-38478 None:intergenic
GTCAAAGAAACGAAGCTGAA+GGG 0.596848 tig0011947:-36297 None:intergenic
TGGTGAGTTTCCAAAAGATG+TGG 0.607185 tig0011947:-37738 None:intergenic
TACTGAACAAGAGGTTACAA+AGG 0.612360 tig0011947:+35295 Msa1350870:CDS
GGACAAGGATCAAACAATGG+TGG 0.624982 tig0011947:+38232 Msa1350870:CDS
CTGATGCTGTTACTTGAAGA+GGG 0.633343 tig0011947:-37616 None:intergenic
TCAAGTAACAGCATCAGCCA+TGG 0.634105 tig0011947:+37622 Msa1350870:CDS
AAATGTGCTAATGAGGAGAT+GGG 0.639036 tig0011947:+36209 Msa1350870:CDS
AGCTAAATGTGATACTCCCA+CGG 0.647058 tig0011947:+36715 Msa1350870:CDS
AGGCAAAGTGACACAAACTC+GGG 0.648244 tig0011947:-36395 None:intergenic
GTTTCGTCGATTGTAGGACA+AGG 0.650226 tig0011947:+38217 Msa1350870:CDS
AGCTGAAGTTGTATATGCCA+TGG 0.650411 tig0011947:-37639 None:intergenic
AAATCAGATACTAACTCCGA+TGG 0.660110 tig0011947:-36539 None:intergenic
TAGCTCAGAAGAATTACCAA+AGG 0.660407 tig0011947:+36574 Msa1350870:CDS
GTAGGACAAGGATCAAACAA+TGG 0.686881 tig0011947:+38229 Msa1350870:CDS
TGAATGATGGATGTCAATGG+AGG 0.707535 tig0011947:+37168 Msa1350870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATATATATAACATG+TGG - tig0011947:36022-36041 None:intergenic 10.0%
!! AGAAATACTTAAATTTAATT+TGG + tig0011947:36816-36835 Msa1350870:intron 10.0%
!!! ATTTTTTTTTTATGCTTATA+GGG - tig0011947:37445-37464 None:intergenic 10.0%
!!! TATTTTTTTTTTATGCTTAT+AGG - tig0011947:37446-37465 None:intergenic 10.0%
!! TCTATACAATAATATAAATA+AGG - tig0011947:37473-37492 None:intergenic 10.0%
!! AACAATAATAACAATAAATT+AGG + tig0011947:38001-38020 Msa1350870:CDS 10.0%
!! ACAATAATAACAATAAATTA+GGG + tig0011947:38002-38021 Msa1350870:CDS 10.0%
!!! TTTTCTAGTTTCAAATTTAT+TGG + tig0011947:35548-35567 Msa1350870:intron 15.0%
!! AGTCATAAAAAGATTTAATA+AGG - tig0011947:35882-35901 None:intergenic 15.0%
!!! AATTTTATTTCTTCTTCATA+TGG + tig0011947:35939-35958 Msa1350870:intron 15.0%
!!! TTATCCTTATTAATCTTTTT+AGG + tig0011947:36053-36072 Msa1350870:intron 15.0%
!!! ATTTTTTGCTTTCAAAATAT+CGG - tig0011947:37419-37438 None:intergenic 15.0%
!!! TTGATGATTTGTTATGTATA+AGG + tig0011947:35416-35435 Msa1350870:intron 20.0%
!! CAATATGACTGATTATATAT+AGG + tig0011947:35608-35627 Msa1350870:intron 20.0%
!! ATGAACAAAACAATAATACA+TGG - tig0011947:35744-35763 None:intergenic 20.0%
!! ATGTCCTAAAAAGATTAATA+AGG - tig0011947:36060-36079 None:intergenic 20.0%
!! AGACAAAAAAGAAGAAAAAT+CGG - tig0011947:36984-37003 None:intergenic 20.0%
!!! CTGAAATCATATAAATTTTG+GGG - tig0011947:37534-37553 None:intergenic 20.0%
!!! CCTGAAATCATATAAATTTT+GGG - tig0011947:37535-37554 None:intergenic 20.0%
!!! ACCTGAAATCATATAAATTT+TGG - tig0011947:37536-37555 None:intergenic 20.0%
!! TTGTTGGAAACAAATTATTA+TGG - tig0011947:37847-37866 None:intergenic 20.0%
!! GAACAAAAACTAAGATTATT+TGG - tig0011947:37941-37960 None:intergenic 20.0%
!!! ATTGTTATTATTGTTCCAAA+TGG - tig0011947:37996-38015 None:intergenic 20.0%
!!! CTTGAGTTTTTTCAATATTA+GGG - tig0011947:38048-38067 None:intergenic 20.0%
!!! ACTTGAGTTTTTTCAATATT+AGG - tig0011947:38049-38068 None:intergenic 20.0%
!! ATATTGAAAAAACTCAAGTT+AGG + tig0011947:38050-38069 Msa1350870:CDS 20.0%
!!! AACAATTTGTTGAATCAAAA+TGG + tig0011947:38334-38353 Msa1350870:CDS 20.0%
!! ATTGTTGATATTGTTAACAA+TGG - tig0011947:38488-38507 None:intergenic 20.0%
! AGAAAAAATTAGTGAGGATT+AGG - tig0011947:35332-35351 None:intergenic 25.0%
!! ATAACTTTTAACAGCTAACA+AGG - tig0011947:35790-35809 None:intergenic 25.0%
!! TGGATTAGACTCTAAATATA+TGG + tig0011947:36514-36533 Msa1350870:CDS 25.0%
! GGTCACTATATCATAAAAAT+TGG + tig0011947:36837-36856 Msa1350870:intron 25.0%
! CCCAAAATTTATATGATTTC+AGG + tig0011947:37532-37551 Msa1350870:intron 25.0%
! ATCTTAATCACAACATATGA+AGG + tig0011947:37581-37600 Msa1350870:CDS 25.0%
!! AACAAATTATTATGGTTTGG+TGG - tig0011947:37839-37858 None:intergenic 25.0%
! GGAAACAAATTATTATGGTT+TGG - tig0011947:37842-37861 None:intergenic 25.0%
!! TTTTCCTGGAAATGATTAAA+AGG - tig0011947:38076-38095 None:intergenic 25.0%
!!! GATTTTGATAGAAATTTTCC+TGG - tig0011947:38090-38109 None:intergenic 25.0%
!! AAATTGTTTGAAACCATTTG+AGG - tig0011947:38322-38341 None:intergenic 25.0%
! TTGTTGAATCAAAATGGAAA+AGG + tig0011947:38340-38359 Msa1350870:CDS 25.0%
! TTGATATTGTTAACAATGGA+TGG - tig0011947:38484-38503 None:intergenic 25.0%
AAATTAGTGAGGATTAGGAT+TGG - tig0011947:35327-35346 None:intergenic 30.0%
TGCACAAGAAAAAATTAGTG+AGG - tig0011947:35338-35357 None:intergenic 30.0%
!!! AAGAAGTTTTGTTGTTGTAG+AGG - tig0011947:35530-35549 None:intergenic 30.0%
TAGAGAGATTGTTTGTGTTT+AGG + tig0011947:35583-35602 Msa1350870:intron 30.0%
ATGCTGTACAATATTGTTGT+AGG + tig0011947:35642-35661 Msa1350870:intron 30.0%
TCTTCTTCATATGGTATAGT+TGG + tig0011947:35948-35967 Msa1350870:intron 30.0%
!! TCATAGCCTAGTATTTTTGT+CGG + tig0011947:36108-36127 Msa1350870:intron 30.0%
ATCATACCGACAAAAATACT+AGG - tig0011947:36117-36136 None:intergenic 30.0%
! CTCCTATGATTTTGAATTCT+AGG + tig0011947:36175-36194 Msa1350870:intron 30.0%
CTCCTAGAATTCAAAATCAT+AGG - tig0011947:36180-36199 None:intergenic 30.0%
! CTATGATTTTGAATTCTAGG+AGG + tig0011947:36178-36197 Msa1350870:intron 30.0%
CAAACTAAAATGTGCTAATG+AGG + tig0011947:36202-36221 Msa1350870:CDS 30.0%
GCTTCTTTCTTATACTCATT+TGG - tig0011947:36431-36450 None:intergenic 30.0%
!! CTTTCTCTTTAGGTTTGTTA+GGG - tig0011947:36469-36488 None:intergenic 30.0%
! TCTTTCTCTTTAGGTTTGTT+AGG - tig0011947:36470-36489 None:intergenic 30.0%
ACCTAAAGAGAAAGAAGATA+TGG + tig0011947:36475-36494 Msa1350870:CDS 30.0%
TCCATATCTTCTTTCTCTTT+AGG - tig0011947:36479-36498 None:intergenic 30.0%
CTCTAAATATATGGTACCAT+CGG + tig0011947:36523-36542 Msa1350870:CDS 30.0%
AATTCTTCTGAGCTATTCAT+TGG - tig0011947:36569-36588 None:intergenic 30.0%
GAAGTTGAAGTTGAAGAAAA+AGG + tig0011947:36596-36615 Msa1350870:CDS 30.0%
! AATTAGTTGATACTAACCGT+GGG - tig0011947:36734-36753 None:intergenic 30.0%
! TAATTAGTTGATACTAACCG+TGG - tig0011947:36735-36754 None:intergenic 30.0%
TCTTTCAAACAGATGAATGA+TGG + tig0011947:37155-37174 Msa1350870:intron 30.0%
TATGGACAAAAGATAGCAAA+AGG + tig0011947:37194-37213 Msa1350870:CDS 30.0%
TATATACCTGTTTCCTAACT+GGG - tig0011947:37268-37287 None:intergenic 30.0%
GTGTTCTTGATTGTTCATAT+TGG - tig0011947:37796-37815 None:intergenic 30.0%
!! GGAATGAAGAAATGTTGTTT+TGG - tig0011947:37818-37837 None:intergenic 30.0%
!! TTTGATGATGATAAGGATGA+AGG - tig0011947:37890-37909 None:intergenic 30.0%
!! AGCTATGTTTGATGATGATA+AGG - tig0011947:37897-37916 None:intergenic 30.0%
AGATTATTTGGCGAAAATCT+CGG - tig0011947:37929-37948 None:intergenic 30.0%
GATGATATTGGTGTGAAATT+TGG - tig0011947:37974-37993 None:intergenic 30.0%
TTGTTCCAAATGGATGATAT+TGG - tig0011947:37986-38005 None:intergenic 30.0%
CAAGAAGAAAATAGAGAGAA+TGG + tig0011947:38259-38278 Msa1350870:CDS 30.0%
GAAAATAGAGAGAATGGTTT+AGG + tig0011947:38265-38284 Msa1350870:CDS 30.0%
AAATGGAAAAGGATGTTTGA+AGG + tig0011947:38351-38370 Msa1350870:CDS 30.0%
AATGGAAAAGGATGTTTGAA+GGG + tig0011947:38352-38371 Msa1350870:CDS 30.0%
!!! TTTTTAGCTTGTGAACTTGT+TGG - tig0011947:38400-38419 None:intergenic 30.0%
ATATTGTTAACAATGGATGG+AGG - tig0011947:38481-38500 None:intergenic 30.0%
AGCAATCAACTTCAACTTCA+TGG - tig0011947:35274-35293 None:intergenic 35.0%
TACTGAACAAGAGGTTACAA+AGG + tig0011947:35295-35314 Msa1350870:CDS 35.0%
AAAATGTGCTAATGAGGAGA+TGG + tig0011947:36208-36227 Msa1350870:CDS 35.0%
AAATGTGCTAATGAGGAGAT+GGG + tig0011947:36209-36228 Msa1350870:CDS 35.0%
ATGGAAGTTAACCTAAGTCT+TGG + tig0011947:36494-36513 Msa1350870:CDS 35.0%
TAGAGTCTAATCCAAGACTT+AGG - tig0011947:36508-36527 None:intergenic 35.0%
AAATCAGATACTAACTCCGA+TGG - tig0011947:36542-36561 None:intergenic 35.0%
TAGCTCAGAAGAATTACCAA+AGG + tig0011947:36574-36593 Msa1350870:CDS 35.0%
TCTTCAACTTCAACTTCCTT+TGG - tig0011947:36593-36612 None:intergenic 35.0%
!! TCGTCACTAATTTTGATGCT+AGG + tig0011947:36934-36953 Msa1350870:intron 35.0%
!! AGATGAATGATGGATGTCAA+TGG + tig0011947:37165-37184 Msa1350870:intron 35.0%
GTATATACCTGTTTCCTAAC+TGG - tig0011947:37269-37288 None:intergenic 35.0%
CAATGAACGACAAACAAATG+AGG - tig0011947:37334-37353 None:intergenic 35.0%
TGATCTTAGAGTTTGTGAAG+TGG + tig0011947:37358-37377 Msa1350870:intron 35.0%
GATCTTAGAGTTTGTGAAGT+GGG + tig0011947:37359-37378 Msa1350870:intron 35.0%
! CACAACAATTCCACATCTTT+TGG + tig0011947:37728-37747 Msa1350870:CDS 35.0%
! TTTAGACCATTGAGTTGTGT+TGG - tig0011947:37761-37780 None:intergenic 35.0%
ATAAGGATGAAGGAGAAGTT+AGG - tig0011947:37880-37899 None:intergenic 35.0%
TGTGAAATTTGGTTGTTGTG+TGG - tig0011947:37963-37982 None:intergenic 35.0%
TCACACCAATATCATCCATT+TGG + tig0011947:37978-37997 Msa1350870:CDS 35.0%
! TAGGCCTTTTAATCATTTCC+AGG + tig0011947:38069-38088 Msa1350870:CDS 35.0%
TCTTCAATCTCTGAACTGCT+AGG - tig0011947:35230-35249 None:intergenic 40.0%
TGATTGCTCTACTGAACAAG+AGG + tig0011947:35286-35305 Msa1350870:CDS 40.0%
GTCAAAGAAACGAAGCTGAA+GGG - tig0011947:36300-36319 None:intergenic 40.0%
TGTCAAAGAAACGAAGCTGA+AGG - tig0011947:36301-36320 None:intergenic 40.0%
AAGGCAAAGTGACACAAACT+CGG - tig0011947:36399-36418 None:intergenic 40.0%
ACTCATTTGGACTTCTTCCA+AGG - tig0011947:36418-36437 None:intergenic 40.0%
! GAAACTCTGACTCTTTTAGC+AGG - tig0011947:36689-36708 None:intergenic 40.0%
AGCTAAATGTGATACTCCCA+CGG + tig0011947:36715-36734 Msa1350870:CDS 40.0%
!! TGAATGATGGATGTCAATGG+AGG + tig0011947:37168-37187 Msa1350870:CDS 40.0%
GGATGTCAATGGAGGAAATA+TGG + tig0011947:37176-37195 Msa1350870:CDS 40.0%
GGTAAACAATCTTCTCCAAG+CGG + tig0011947:37383-37402 Msa1350870:intron 40.0%
ACATGTCATCAGCACATCTT+TGG - tig0011947:37559-37578 None:intergenic 40.0%
! CTGATGCTGTTACTTGAAGA+GGG - tig0011947:37619-37638 None:intergenic 40.0%
AGCTGAAGTTGTATATGCCA+TGG - tig0011947:37642-37661 None:intergenic 40.0%
TGGTGAGTTTCCAAAAGATG+TGG - tig0011947:37741-37760 None:intergenic 40.0%
AACTCACCAACACAACTCAA+TGG + tig0011947:37752-37771 Msa1350870:CDS 40.0%
GTTAGGTCAAGAGTGATTGT+TGG - tig0011947:37863-37882 None:intergenic 40.0%
CAAGTTATCAAACCCCTTCA+AGG + tig0011947:38122-38141 Msa1350870:CDS 40.0%
GCTATAACTGAGTGAAGACT+TGG - tig0011947:38190-38209 None:intergenic 40.0%
GTAGGACAAGGATCAAACAA+TGG + tig0011947:38229-38248 Msa1350870:CDS 40.0%
! GCAGGGTTGAATTTGAAACT+TGG + tig0011947:38289-38308 Msa1350870:CDS 40.0%
! ACTTGGTGAGTATCCTCAAA+TGG + tig0011947:38306-38325 Msa1350870:CDS 40.0%
GAGACAGAAAATGGCAATGA+AGG - tig0011947:38439-38458 None:intergenic 40.0%
CTGCTCTTAGAGACAGAAAA+TGG - tig0011947:38448-38467 None:intergenic 40.0%
AGGCAAAGTGACACAAACTC+GGG - tig0011947:36398-36417 None:intergenic 45.0%
!! GAGTTTGTGTCACTTTGCCT+TGG + tig0011947:36398-36417 Msa1350870:CDS 45.0%
CGATAGTATGCTCTTGGACA+TGG - tig0011947:37224-37243 None:intergenic 45.0%
GTGCAACGATAGTATGCTCT+TGG - tig0011947:37230-37249 None:intergenic 45.0%
CTTAGAGTTTGTGAAGTGGG+TGG + tig0011947:37362-37381 Msa1350870:intron 45.0%
! GCTGATGCTGTTACTTGAAG+AGG - tig0011947:37620-37639 None:intergenic 45.0%
TCAAGTAACAGCATCAGCCA+TGG + tig0011947:37622-37641 Msa1350870:CDS 45.0%
TTCAGCTGCAGCATCAATGA+TGG + tig0011947:37655-37674 Msa1350870:CDS 45.0%
GCAGCATCAATGATGGTATC+AGG + tig0011947:37662-37681 Msa1350870:CDS 45.0%
! GTTTCGTCGATTGTAGGACA+AGG + tig0011947:38217-38236 Msa1350870:CDS 45.0%
GGACAAGGATCAAACAATGG+TGG + tig0011947:38232-38251 Msa1350870:CDS 45.0%
AGAGAGAATGGTTTAGGTGC+AGG + tig0011947:38271-38290 Msa1350870:CDS 45.0%
GAGAGAATGGTTTAGGTGCA+GGG + tig0011947:38272-38291 Msa1350870:CDS 45.0%
!! ATAAAAAATTTAAATAATGA+TGG - tig0011947:37014-37033 None:intergenic 5.0%
TGTTTCCTAACTGGGCATGC+TGG - tig0011947:37260-37279 None:intergenic 50.0%
AGCATGCCCAGTTAGGAAAC+AGG + tig0011947:37259-37278 Msa1350870:CDS 50.0%
ATCGGTGTGTTCTATCCGCT+TGG - tig0011947:37401-37420 None:intergenic 50.0%
AACCCCTTCAAGGCAAGCTT+TGG + tig0011947:38132-38151 Msa1350870:CDS 50.0%
AGCCAAAGCTTGCCTTGAAG+GGG - tig0011947:38137-38156 None:intergenic 50.0%
CAGCCAAAGCTTGCCTTGAA+GGG - tig0011947:38138-38157 None:intergenic 50.0%
TCAGCCAAAGCTTGCCTTGA+AGG - tig0011947:38139-38158 None:intergenic 50.0%
! GCTGCAGTTTCGTCGATTGT+AGG + tig0011947:38211-38230 Msa1350870:CDS 50.0%
TTGCACCAGCATGCCCAGTT+AGG + tig0011947:37252-37271 Msa1350870:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0011947 gene 35218 38537 35218 ID=Msa1350870;Name=Msa1350870
tig0011947 mRNA 35218 38537 35218 ID=Msa1350870-mRNA-1;Parent=Msa1350870;Name=Msa1350870-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|0.75|1|1|4|0|578
tig0011947 exon 35218 35316 35218 ID=Msa1350870-mRNA-1:exon:7569;Parent=Msa1350870-mRNA-1
tig0011947 exon 36197 36736 36197 ID=Msa1350870-mRNA-1:exon:7570;Parent=Msa1350870-mRNA-1
tig0011947 exon 37167 37280 37167 ID=Msa1350870-mRNA-1:exon:7571;Parent=Msa1350870-mRNA-1
tig0011947 exon 37554 38537 37554 ID=Msa1350870-mRNA-1:exon:7572;Parent=Msa1350870-mRNA-1
tig0011947 CDS 35218 35316 35218 ID=Msa1350870-mRNA-1:cds;Parent=Msa1350870-mRNA-1
tig0011947 CDS 36197 36736 36197 ID=Msa1350870-mRNA-1:cds;Parent=Msa1350870-mRNA-1
tig0011947 CDS 37167 37280 37167 ID=Msa1350870-mRNA-1:cds;Parent=Msa1350870-mRNA-1
tig0011947 CDS 37554 38537 37554 ID=Msa1350870-mRNA-1:cds;Parent=Msa1350870-mRNA-1
Gene Sequence

>Msa1350870

ATGTCGAGTCCTAGCAGTTCAGAGATTGAAGAGAAAAGAGTTACTTCAATTATCCATGAAGTTGAAGTTGATTGCTCTACTGAACAAGAGGTTACAAAGGAGGACAAACTAAAATGTGCTAATGAGGAGATGGGTGACGTAAAAGAAGAAAACGAAAGATTGAAGACGATGCTGTCACGAGTTGAAAAAGACTACAATTCCCTTCAGCTTCGTTTCTTTGACATTGTTAACAAAGACGTTTCTATGAAAGATATAGAAGATTCGTCAACTAATTCACACGAAGAAATCGATGAAGAACCCGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCAAAAAACATTGAAAACCCTAACAAACCTAAAGAGAAAGAAGATATGGAAGTTAACCTAAGTCTTGGATTAGACTCTAAATATATGGTACCATCGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAGCAATATTTTCAACAAATAAATCAACAAAAGTGATAAATGTAAATGATGAGATTTCAGAACTATTGCCTGCTAAAAGAGTCAGAGTTTCTGTGAGAGCTAAATGTGATACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTCCAAAGATGTGCTGATGACATGTCAATCTTAATCACAACATATGAAGGAACACACAATCACCCTCTTCAAGTAACAGCATCAGCCATGGCATATACAACTTCAGCTGCAGCATCAATGATGGTATCAGGTTCATCAACATCATCATCATCACATCAAAATCAAAATGTTCATCACAACAATTCCACATCTTTTGGAAACTCACCAACACAACTCAATGGTCTAAATTTCAATCATCACCAATATGAACAATCAAGAACACCAAAACAACATTTCTTCATTCCACCAAACCATAATAATTTGTTTCCAACAATCACTCTTGACCTAACTTCTCCTTCATCCTTATCATCATCAAACATAGCTTCAAATGTTCCGAGATTTTCGCCAAATAATCTTAGTTTTTGTTCCACACAACAACCAAATTTCACACCAATATCATCCATTTGGAACAATAATAACAATAAATTAGGGTTTATTAACAATAACTCAAACCCTAATATTGAAAAAACTCAAGTTAGGCCTTTTAATCATTTCCAGGAAAATTTCTATCAAAATCAAAATTGCATGACAAGTTATCAAACCCCTTCAAGGCAAGCTTTGGCTGAAACAATAAGCAAAGCAATAAGCACTGATCCAAGTCTTCACTCAGTTATAGCTGCTGCAGTTTCGTCGATTGTAGGACAAGGATCAAACAATGGTGGAAAGCAAGAAGAAAATAGAGAGAATGGTTTAGGTGCAGGGTTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGAAAAGGATGTTTGAAGGGATCATACTTCAAAAGATTGTCACCAACAAGTTCACAAGCTAAAAATTTCATGCTTCTTCAACCTTCATTGCCATTTTCTGTCTCTAAGAGCAGTGCTAGTAAACCTCCATCCATTGTTAACAATATCAACAATTTTGATCTAGATAAGAACAAACATAATTAG

Protein sequence

>Msa1350870

MSSPSSSEIEEKRVTSIIHEVEVDCSTEQEVTKEDKLKCANEEMGDVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTNSHEEIDEEPEFVSLCLGRSPNEYKKEAKNIENPNKPKEKEDMEVNLSLGLDSKYMVPSELVSDLSPMNSSEELPKEVEVEEKGAIFSTNKSTKVINVNDEISELLPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSGSSTSSSSHQNQNVHHNNSTSFGNSPTQLNGLNFNHHQYEQSRTPKQHFFIPPNHNNLFPTITLDLTSPSSLSSSNIASNVPRFSPNNLSFCSTQQPNFTPISSIWNNNNNKLGFINNNSNPNIEKTQVRPFNHFQENFYQNQNCMTSYQTPSRQALAETISKAISTDPSLHSVIAAAVSSIVGQGSNNGGKQEENRENGLGAGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTSSQAKNFMLLQPSLPFSVSKSSASKPPSIVNNINNFDLDKNKHN*