AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1100030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100030 MtrunA17_Chr7g0216891 97.418 581 12 3 1 578 4 584 0.0 1157
Msa1100030 MtrunA17_Chr4g0060271 39.446 578 258 22 34 560 68 604 4.22e-80 263
Msa1100030 MtrunA17_Chr4g0051181 40.994 322 88 9 197 483 225 479 2.19e-50 181
Msa1100030 MtrunA17_Chr3g0099641 36.552 290 114 4 188 477 225 444 1.61e-48 175
Msa1100030 MtrunA17_Chr2g0322391 29.980 507 234 13 11 478 132 556 4.43e-47 174
Msa1100030 MtrunA17_Chr7g0270831 71.429 98 28 0 194 291 195 292 5.28e-47 170
Msa1100030 MtrunA17_Chr2g0288871 39.600 250 128 6 28 274 135 364 6.52e-45 167
Msa1100030 MtrunA17_Chr4g0075201 35.734 361 152 11 42 391 126 417 2.35e-44 164
Msa1100030 MtrunA17_Chr2g0302391 34.615 312 120 9 188 489 185 422 4.93e-40 151
Msa1100030 MtrunA17_Chr4g0025051 38.532 218 95 3 166 383 292 470 4.65e-39 151
Msa1100030 MtrunA17_Chr4g0025061 46.853 143 70 1 166 308 317 453 4.06e-38 149
Msa1100030 MtrunA17_Chr4g0024391 44.056 143 74 2 166 308 186 322 2.20e-34 136
Msa1100030 MtrunA17_Chr4g0001361 56.098 82 34 2 194 273 139 220 5.14e-25 105
Msa1100030 MtrunA17_Chr1g0150281 53.333 75 35 0 198 272 123 197 3.86e-23 99.8
Msa1100030 MtrunA17_Chr3g0136961 61.017 59 23 0 214 272 137 195 4.10e-23 99.8
Msa1100030 MtrunA17_Chr2g0333851 60.000 60 24 0 214 273 168 227 2.55e-22 98.2
Msa1100030 MtrunA17_Chr1g0150271 41.228 114 60 3 166 272 45 158 2.76e-22 96.7
Msa1100030 MtrunA17_Chr5g0432161 55.000 80 31 2 197 272 399 477 3.89e-22 100
Msa1100030 MtrunA17_Chr5g0432161 52.542 59 26 2 215 273 244 300 1.58e-12 70.1
Msa1100030 MtrunA17_Chr3g0106491 56.338 71 30 1 202 272 352 421 5.78e-22 99.8
Msa1100030 MtrunA17_Chr3g0106491 50.794 63 29 2 215 277 198 258 5.56e-13 71.6
Msa1100030 MtrunA17_Chr7g0243891 49.412 85 42 1 199 283 358 441 8.41e-22 99.4
Msa1100030 MtrunA17_Chr7g0243891 53.448 58 25 2 216 273 217 272 6.48e-12 68.2
Msa1100030 MtrunA17_Chr5g0445311 44.231 104 56 2 177 280 327 428 1.30e-21 98.6
Msa1100030 MtrunA17_Chr5g0445311 52.542 59 26 2 215 273 200 256 1.46e-11 67.0
Msa1100030 MtrunA17_Chr3g0101131 38.462 130 61 3 154 272 350 471 1.50e-21 98.6
Msa1100030 MtrunA17_Chr3g0101131 50.847 59 27 2 215 273 243 299 3.29e-11 66.2
Msa1100030 MtrunA17_Chr7g0249311 35.766 137 77 3 192 318 366 501 4.71e-21 97.4
Msa1100030 MtrunA17_Chr5g0418191 42.276 123 68 3 152 272 255 376 5.36e-21 95.9
Msa1100030 MtrunA17_Chr5g0418191 50.746 67 28 4 209 274 146 208 5.30e-12 68.2
Msa1100030 MtrunA17_Chr3g0079691 47.917 96 47 2 202 295 482 576 6.32e-21 97.1
Msa1100030 MtrunA17_Chr3g0079691 47.826 69 33 3 205 273 271 336 1.37e-11 67.4
Msa1100030 MtrunA17_Chr7g0249301 47.674 86 41 2 192 274 266 350 6.97e-21 94.7
Msa1100030 MtrunA17_Chr4g0004911 50.649 77 37 1 198 274 319 394 1.10e-20 95.5
Msa1100030 MtrunA17_Chr4g0004911 51.724 58 27 1 216 273 185 241 7.87e-14 74.3
Msa1100030 MtrunA17_Chr2g0294231 50.649 77 37 1 202 278 190 265 1.13e-20 94.4
Msa1100030 MtrunA17_Chr4g0042831 39.098 133 69 4 148 272 206 334 4.17e-20 92.8
Msa1100030 MtrunA17_Chr1g0150801 51.389 72 34 1 202 273 89 159 4.72e-20 87.4
Msa1100030 MtrunA17_Chr7g0218081 36.111 144 71 4 149 272 324 466 1.15e-19 92.4
Msa1100030 MtrunA17_Chr7g0218081 43.023 86 46 3 187 272 201 283 2.28e-11 66.6
Msa1100030 MtrunA17_Chr4g0051881 37.069 116 68 2 202 313 165 279 3.08e-19 89.4
Msa1100030 MtrunA17_Chr7g0224801 46.914 81 40 2 206 286 86 163 3.85e-19 85.1
Msa1100030 MtrunA17_Chr4g0074001 50.000 80 39 1 193 272 337 415 8.69e-19 89.7
Msa1100030 MtrunA17_Chr7g0263531 51.948 77 34 2 203 277 349 424 8.94e-19 89.4
Msa1100030 MtrunA17_Chr7g0263531 42.424 99 51 5 210 306 185 279 2.71e-12 68.9
Msa1100030 MtrunA17_Chr1g0194481 43.000 100 55 2 202 300 145 243 9.05e-19 87.8
Msa1100030 MtrunA17_Chr7g0270191 38.679 106 56 2 185 282 107 211 1.04e-18 87.0
Msa1100030 MtrunA17_Chr5g0447701 52.113 71 33 1 202 272 239 308 1.27e-18 88.2
Msa1100030 MtrunA17_Chr4g0068541 40.171 117 54 3 201 315 194 296 1.32e-18 88.6
Msa1100030 MtrunA17_Chr7g0270051 50.000 74 34 1 215 288 53 123 2.34e-18 85.5
Msa1100030 MtrunA17_Chr5g0401821 54.412 68 29 1 210 277 196 261 3.16e-18 85.1
Msa1100030 MtrunA17_Chr4g0053281 57.627 59 25 0 216 274 267 325 4.73e-18 85.9
Msa1100030 MtrunA17_Chr1g0147881 46.988 83 36 2 200 276 243 323 9.77e-18 84.7
Msa1100030 MtrunA17_Chr5g0443131 46.914 81 42 1 202 282 144 223 2.15e-17 83.2
Msa1100030 MtrunA17_Chr8g0386241 40.909 88 48 3 194 281 85 168 2.53e-17 80.1
Msa1100030 MtrunA17_Chr8g0383251 40.449 89 50 2 202 288 95 182 4.63e-17 79.7
Msa1100030 MtrunA17_Chr5g0419241 61.404 57 22 0 187 243 49 105 5.04e-17 77.0
Msa1100030 MtrunA17_Chr1g0184691 56.140 57 25 0 216 272 294 350 5.16e-17 82.8
Msa1100030 MtrunA17_Chr8g0379461 48.000 75 38 1 205 279 67 140 1.02e-16 80.1
Msa1100030 MtrunA17_Chr8g0335811 35.659 129 76 3 150 272 83 210 1.21e-16 79.3
Msa1100030 MtrunA17_Chr7g0228941 45.238 84 38 2 195 272 28 109 1.29e-16 76.6
Msa1100030 MtrunA17_Chr7g0248721 50.000 72 34 2 202 273 128 197 1.38e-16 79.0
Msa1100030 MtrunA17_Chr3g0129361 47.887 71 36 1 202 272 131 200 1.50e-16 79.0
Msa1100030 MtrunA17_Chr1g0188941 54.237 59 26 1 214 272 50 107 1.74e-16 75.9
Msa1100030 MtrunA17_Chr2g0293481 46.667 75 40 0 216 290 268 342 2.00e-16 82.4
Msa1100030 MtrunA17_Chr3g0139021 48.235 85 33 3 200 275 295 377 3.76e-16 80.9
Msa1100030 MtrunA17_Chr5g0418781 47.297 74 38 1 199 272 108 180 5.14e-16 78.6
Msa1100030 MtrunA17_Chr4g0071521 43.678 87 41 2 200 280 226 310 5.28e-16 79.3
Msa1100030 MtrunA17_Chr8g0383351 52.381 63 29 1 210 272 155 216 5.81e-16 77.8
Msa1100030 MtrunA17_Chr3g0129321 46.479 71 37 1 202 272 105 174 6.44e-16 76.6
Msa1100030 MtrunA17_Chr7g0248691 40.659 91 51 1 198 285 134 224 1.63e-15 78.2
Msa1100030 MtrunA17_Chr8g0348311 40.659 91 51 1 198 285 135 225 2.07e-15 77.8
Msa1100030 MtrunA17_Chr2g0289181 39.000 100 54 1 216 308 15 114 2.72e-15 75.5
Msa1100030 MtrunA17_Chr2g0284321 51.667 60 29 0 215 274 35 94 3.36e-15 75.1
Msa1100030 MtrunA17_Chr7g0238921 48.611 72 35 2 202 272 110 180 4.61e-15 76.6
Msa1100030 MtrunA17_Chr2g0319961 45.946 74 40 0 206 279 71 144 7.27e-15 75.1
Msa1100030 MtrunA17_Chr8g0387501 38.372 86 53 0 213 298 127 212 2.16e-14 73.9
Msa1100030 MtrunA17_Chr6g0485431 48.649 74 36 2 202 274 141 213 8.57e-14 73.2
Msa1100030 MtrunA17_Chr1g0202461 41.304 92 49 2 186 272 227 318 7.32e-13 70.5
Msa1100030 MtrunA17_Chr5g0432071 48.276 58 28 2 215 272 104 159 1.05e-11 64.7
Msa1100030 MtrunA17_Chr8g0387981 45.205 73 37 2 200 270 118 189 2.54e-11 65.5
Msa1100030 MtrunA17_Chr3g0126391 44.595 74 38 2 199 270 118 190 2.55e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100030 AT5G15130.1 40.275 581 256 19 5 554 10 530 2.37e-82 268
Msa1100030 AT5G15130.2 41.144 542 234 18 44 554 1 488 3.50e-80 261
Msa1100030 AT1G18860.1 38.039 510 233 17 24 478 29 510 9.84e-68 229
Msa1100030 AT4G04450.2 38.439 346 162 11 33 361 11 322 7.04e-55 192
Msa1100030 AT4G04450.1 38.439 346 162 11 33 361 105 416 1.61e-53 191
Msa1100030 AT1G68150.1 42.913 254 108 6 43 296 100 316 3.01e-53 186
Msa1100030 AT1G69810.1 36.550 342 172 8 30 363 19 323 4.60e-46 167
Msa1100030 AT1G62300.1 36.697 327 147 9 42 361 162 435 6.53e-42 159
Msa1100030 AT4G01720.1 38.750 240 93 9 43 274 105 298 2.62e-40 153
Msa1100030 AT4G22070.4 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1100030 AT4G22070.3 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1100030 AT4G22070.2 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1100030 AT4G22070.1 76.316 76 18 0 199 274 281 356 4.32e-37 145
Msa1100030 AT1G69810.2 39.033 269 119 8 103 363 34 265 3.68e-36 138
Msa1100030 AT4G31800.2 66.667 60 20 0 213 272 109 168 2.99e-25 105
Msa1100030 AT4G31800.1 66.667 60 20 0 213 272 174 233 3.64e-25 106
Msa1100030 AT2G25000.2 63.636 66 23 1 208 272 95 160 5.44e-24 101
Msa1100030 AT2G25000.4 63.636 66 23 1 208 272 95 160 5.44e-24 101
Msa1100030 AT2G25000.3 63.636 66 23 1 208 272 117 182 9.63e-24 100
Msa1100030 AT2G25000.1 63.636 66 23 1 208 272 138 203 1.13e-23 101
Msa1100030 AT1G80840.1 53.333 75 35 0 200 274 131 205 1.88e-23 101
Msa1100030 AT5G56270.1 44.954 109 57 2 202 310 474 579 1.07e-22 103
Msa1100030 AT1G29860.1 34.783 161 96 4 173 330 94 248 1.69e-22 98.2
Msa1100030 AT2G38470.1 42.188 128 60 4 202 317 349 474 2.49e-22 101
Msa1100030 AT2G38470.1 51.724 58 26 2 216 273 185 240 5.75e-12 68.9
Msa1100030 AT4G26640.5 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1100030 AT4G26640.5 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1100030 AT4G26640.6 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1100030 AT4G26640.6 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1100030 AT4G26640.4 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1100030 AT4G26640.4 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1100030 AT4G26640.3 37.908 153 72 5 191 328 180 324 6.01e-22 98.6
Msa1100030 AT4G26640.3 46.377 69 33 3 207 273 25 91 4.26e-11 65.5
Msa1100030 AT4G26640.7 37.908 153 72 5 191 328 316 460 1.60e-21 98.6
Msa1100030 AT4G26640.7 46.377 69 33 3 207 273 161 227 5.46e-11 65.9
Msa1100030 AT4G26640.1 37.908 153 72 5 191 328 284 428 1.66e-21 98.6
Msa1100030 AT4G26640.1 46.377 69 33 3 207 273 129 195 5.43e-11 65.5
Msa1100030 AT5G49520.1 36.567 134 68 3 199 318 205 335 1.69e-21 97.4
Msa1100030 AT4G26640.2 37.908 153 72 5 191 328 356 500 2.42e-21 98.2
Msa1100030 AT4G26640.2 46.377 69 33 3 207 273 201 267 6.32e-11 65.5
Msa1100030 AT5G41570.1 48.235 85 43 1 191 275 74 157 6.35e-21 90.9
Msa1100030 AT5G26170.1 34.667 150 77 4 139 272 25 169 8.12e-21 90.5
Msa1100030 AT1G13960.2 49.438 89 38 2 192 274 227 314 1.01e-20 94.7
Msa1100030 AT1G13960.2 51.562 64 28 3 209 272 71 131 3.58e-12 68.6
Msa1100030 AT1G13960.1 49.438 89 38 2 192 274 380 467 1.37e-20 95.9
Msa1100030 AT1G13960.1 51.562 64 28 3 209 272 224 284 2.75e-12 69.7
Msa1100030 AT2G46130.1 55.556 72 31 1 202 273 17 87 2.16e-20 87.0
Msa1100030 AT2G03340.1 39.394 132 46 4 202 332 402 500 2.19e-20 95.1
Msa1100030 AT2G03340.1 53.030 66 28 3 209 274 245 307 2.46e-13 73.2
Msa1100030 AT2G04880.2 49.412 85 38 2 194 274 258 341 2.50e-20 94.7
Msa1100030 AT2G04880.2 51.667 60 27 2 214 273 110 167 1.92e-12 70.1
Msa1100030 AT2G04880.1 49.412 85 38 2 194 274 282 365 3.11e-20 94.4
Msa1100030 AT2G04880.1 51.667 60 27 2 214 273 110 167 2.18e-12 70.1
Msa1100030 AT4G26440.1 32.510 243 132 11 164 397 325 544 3.50e-20 94.7
Msa1100030 AT1G64000.1 51.351 74 35 1 202 275 101 173 3.81e-20 89.4
Msa1100030 AT1G29280.1 48.810 84 42 1 196 279 56 138 4.06e-20 90.9
Msa1100030 AT1G55600.1 45.977 87 42 2 191 273 279 364 4.36e-20 94.0
Msa1100030 AT5G13080.1 47.297 74 38 1 202 275 54 126 5.04e-20 87.4
Msa1100030 AT3G01080.1 53.521 71 32 1 202 272 293 362 2.33e-19 91.3
Msa1100030 AT3G01080.2 53.521 71 32 1 202 272 331 400 2.49e-19 91.7
Msa1100030 AT4G18170.1 47.561 82 42 1 193 274 150 230 2.49e-19 89.7
Msa1100030 AT5G46350.1 42.105 95 54 1 202 296 170 263 4.30e-19 89.0
Msa1100030 AT5G07100.2 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1100030 AT5G07100.4 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1100030 AT5G07100.5 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1100030 AT5G07100.3 50.649 77 37 1 198 274 124 199 4.56e-19 86.7
Msa1100030 AT2G23320.1 61.017 59 23 0 216 274 241 299 5.32e-19 88.6
Msa1100030 AT5G07100.1 52.000 75 35 1 198 272 217 290 6.53e-19 88.2
Msa1100030 AT4G30935.1 43.564 101 50 2 197 291 313 412 1.37e-18 89.4
Msa1100030 AT1G69310.4 51.351 74 35 1 199 272 131 203 1.86e-18 86.7
Msa1100030 AT1G69310.2 51.351 74 35 1 199 272 131 203 1.86e-18 86.7
Msa1100030 AT1G69310.1 51.351 74 35 1 199 272 131 203 1.86e-18 86.7
Msa1100030 AT2G47260.1 41.584 101 54 2 199 295 158 257 1.92e-18 87.4
Msa1100030 AT5G64810.1 47.887 71 36 1 202 272 97 166 2.19e-18 84.0
Msa1100030 AT2G30250.1 50.649 77 37 1 198 274 311 386 2.43e-18 87.8
Msa1100030 AT2G30590.1 50.000 80 32 2 200 273 294 371 7.08e-18 86.3
Msa1100030 AT3G04670.1 55.385 65 28 1 220 284 267 330 7.55e-18 85.5
Msa1100030 AT4G24240.1 45.349 86 43 1 200 281 262 347 1.37e-17 85.1
Msa1100030 AT5G28650.1 53.846 65 29 1 220 284 267 330 2.23e-17 84.0
Msa1100030 AT2G44745.1 49.296 71 35 1 202 272 132 201 2.25e-17 81.6
Msa1100030 AT2G37260.2 58.065 62 25 1 213 274 265 325 4.82e-17 83.2
Msa1100030 AT2G37260.2 54.386 57 24 2 216 272 84 138 1.50e-12 69.7
Msa1100030 AT2G37260.3 58.065 62 25 1 213 274 267 327 5.21e-17 83.2
Msa1100030 AT2G37260.3 54.386 57 24 2 216 272 86 140 1.49e-12 69.7
Msa1100030 AT2G37260.1 58.065 62 25 1 213 274 347 407 9.79e-17 83.2
Msa1100030 AT2G37260.1 54.386 57 24 2 216 272 166 220 2.01e-12 69.7
Msa1100030 AT4G31550.1 51.316 76 33 3 199 272 230 303 1.40e-16 81.6
Msa1100030 AT2G24570.1 45.545 101 47 4 199 297 227 321 1.47e-16 81.6
Msa1100030 AT4G31550.2 51.316 76 33 3 199 272 229 302 1.49e-16 81.6
Msa1100030 AT3G62340.1 50.000 72 35 1 202 273 105 175 3.01e-16 79.7
Msa1100030 AT4G39410.1 47.887 71 36 1 202 272 210 279 3.13e-16 80.1
Msa1100030 AT3G01970.1 46.479 71 37 1 202 272 52 121 4.84e-16 75.9
Msa1100030 AT1G30650.1 49.254 67 34 0 216 282 218 284 1.16e-15 80.1
Msa1100030 AT2G46130.2 51.389 72 30 2 202 273 17 83 1.73e-15 73.2
Msa1100030 AT3G58710.1 55.000 60 27 0 215 274 71 130 1.82e-15 77.4
Msa1100030 AT3G58710.2 55.000 60 27 0 215 274 70 129 2.04e-15 77.0
Msa1100030 AT2G34830.1 49.254 67 34 0 216 282 216 282 2.65e-15 79.0
Msa1100030 AT2G34830.2 49.254 67 34 0 216 282 225 291 3.14e-15 78.6
Msa1100030 AT4G01250.1 46.479 71 38 0 215 285 128 198 4.96e-15 76.6
Msa1100030 AT2G21900.1 46.667 60 31 1 214 273 108 166 2.25e-14 72.8
Msa1100030 AT5G52830.1 48.571 70 36 0 216 285 166 235 2.36e-14 75.1
Msa1100030 AT4G23550.1 42.857 77 44 0 214 290 139 215 4.56e-14 73.9
Msa1100030 AT4G31800.3 65.000 40 14 0 213 252 174 213 4.63e-14 72.4
Msa1100030 AT1G69310.3 47.297 74 34 2 199 272 131 199 1.31e-13 72.0
Msa1100030 AT5G43290.1 47.222 72 36 2 202 272 100 170 2.34e-13 71.2
Msa1100030 AT5G24110.1 35.833 120 69 4 155 270 55 170 1.94e-12 68.9
Msa1100030 AT5G45050.4 38.636 88 54 0 215 302 1041 1128 3.97e-12 70.1
Msa1100030 AT5G45050.1 37.000 100 59 1 215 310 1180 1279 4.12e-12 70.1
Msa1100030 AT5G45050.2 38.636 88 54 0 215 302 1152 1239 4.43e-12 69.7
Msa1100030 AT1G66560.1 47.761 67 33 1 206 270 94 160 6.90e-11 63.5
Msa1100030 AT2G40740.1 50.847 59 27 1 215 271 173 231 9.29e-11 63.5

Find 95 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATAATAACAATAAATT+AGG 0.135542 7_3:-29385112 Msa1100030:CDS
CACAACAATTCCACATCTTT+TGG 0.160553 7_3:-29385385 Msa1100030:CDS
AACAATTTGTTGAATCAAAA+TGG 0.181145 7_3:-29384779 Msa1100030:CDS
TCTTTCTCTTTAGGTTTGTT+AGG 0.187408 7_3:+29387248 None:intergenic
TCCATATCTTCTTTCTCTTT+AGG 0.253785 7_3:+29387239 None:intergenic
GATGATATTGGTGTGAAATT+TGG 0.273603 7_3:+29385142 None:intergenic
TTGTTGGAAACAAATTATTA+TGG 0.295644 7_3:+29385269 None:intergenic
GCTTCTTTCTTATACTCATT+TGG 0.300183 7_3:+29387287 None:intergenic
GTATATACCTGTTTCCTAAC+TGG 0.305967 7_3:+29386449 None:intergenic
ACATGTCATCAGCACATCTT+TGG 0.314882 7_3:+29385557 None:intergenic
AATTCTTCTGAGCTATTCAT+TGG 0.315815 7_3:+29387149 None:intergenic
GAAGTTGAAGTTGAAGAAAA+AGG 0.324758 7_3:-29387119 Msa1100030:CDS
GAAAATAGAGAGAATGGTTT+AGG 0.330212 7_3:-29384848 Msa1100030:CDS
GGATGTCAATGGAGGAAATA+TGG 0.344144 7_3:-29386539 Msa1100030:CDS
ACAATAATAACAATAAATTA+GGG 0.362140 7_3:-29385111 Msa1100030:CDS
GCTGCAGTTTCGTCGATTGT+AGG 0.370957 7_3:-29384902 Msa1100030:CDS
AGAGAGAATGGTTTAGGTGC+AGG 0.371097 7_3:-29384842 Msa1100030:CDS
TCTTCAACTTCAACTTCCTT+TGG 0.371657 7_3:+29387125 None:intergenic
CTTTCTCTTTAGGTTTGTTA+GGG 0.381231 7_3:+29387249 None:intergenic
AACCCCTTCAAGGCAAGCTT+TGG 0.383268 7_3:-29384981 Msa1100030:CDS
TGGATTAGACTCTAAATATA+TGG 0.384134 7_3:-29387201 Msa1100030:CDS
GTGTTCTTGATTGTTCATAT+TGG 0.389663 7_3:+29385320 None:intergenic
TCACACCAATATCATCCATT+TGG 0.393132 7_3:-29385135 Msa1100030:CDS
TTGTTCCAAATGGATGATAT+TGG 0.395825 7_3:+29385130 None:intergenic
GGAATGAAGAAATGTTGTTT+TGG 0.395896 7_3:+29385298 None:intergenic
CTGCTCTTAGAGACAGAAAA+TGG 0.396322 7_3:+29384668 None:intergenic
GCAGCATCAATGATGGTATC+AGG 0.396478 7_3:-29385451 Msa1100030:CDS
AGCAATCAACTTCAACTTCA+TGG 0.396953 7_3:+29388444 None:intergenic
ACCTAAAGAGAAAGAAGATA+TGG 0.399352 7_3:-29387240 Msa1100030:CDS
TCAGCCAAAGCTTGCCTTGA+AGG 0.406538 7_3:+29384977 None:intergenic
CAAGAAGAAAATAGAGAGAA+TGG 0.423211 7_3:-29384854 Msa1100030:CDS
ATTGTTATTATTGTTCCAAA+TGG 0.426970 7_3:+29385120 None:intergenic
GAGAGAATGGTTTAGGTGCA+GGG 0.431975 7_3:-29384841 Msa1100030:CDS
GGAAACAAATTATTATGGTT+TGG 0.447828 7_3:+29385274 None:intergenic
CAAGTTATCAAACCCCTTCA+AGG 0.448201 7_3:-29384991 Msa1100030:CDS
TAGAGTCTAATCCAAGACTT+AGG 0.454455 7_3:+29387210 None:intergenic
GTTAGGTCAAGAGTGATTGT+TGG 0.454975 7_3:+29385253 None:intergenic
AAATTGTTTGAAACCATTTG+AGG 0.460922 7_3:+29384794 None:intergenic
CAGCCAAAGCTTGCCTTGAA+GGG 0.463069 7_3:+29384978 None:intergenic
TTGCACCAGCATGCCCAGTT+AGG 0.463809 7_3:-29386463 Msa1100030:CDS
ATGGAAGTTAACCTAAGTCT+TGG 0.464788 7_3:-29387221 Msa1100030:CDS
AGCATGCCCAGTTAGGAAAC+AGG 0.467255 7_3:-29386456 Msa1100030:intron
CGATAGTATGCTCTTGGACA+TGG 0.469854 7_3:+29386494 None:intergenic
TTGATATTGTTAACAATGGA+TGG 0.469868 7_3:+29384632 None:intergenic
ACTTGGTGAGTATCCTCAAA+TGG 0.474336 7_3:-29384807 Msa1100030:CDS
ATAAGGATGAAGGAGAAGTT+AGG 0.476278 7_3:+29385236 None:intergenic
TTGTTGAATCAAAATGGAAA+AGG 0.477286 7_3:-29384773 Msa1100030:CDS
AACAAATTATTATGGTTTGG+TGG 0.478026 7_3:+29385277 None:intergenic
TATGGACAAAAGATAGCAAA+AGG 0.482613 7_3:-29386521 Msa1100030:CDS
GTGCAACGATAGTATGCTCT+TGG 0.484000 7_3:+29386488 None:intergenic
AGCTATGTTTGATGATGATA+AGG 0.489640 7_3:+29385219 None:intergenic
GAGACAGAAAATGGCAATGA+AGG 0.505559 7_3:+29384677 None:intergenic
CAAACTAAAATGTGCTAATG+AGG 0.505687 7_3:-29387513 Msa1100030:CDS
AAATGGAAAAGGATGTTTGA+AGG 0.506495 7_3:-29384762 Msa1100030:CDS
ATCTTAATCACAACATATGA+AGG 0.508764 7_3:-29385532 Msa1100030:CDS
AGATTATTTGGCGAAAATCT+CGG 0.509888 7_3:+29385187 None:intergenic
TGTTTCCTAACTGGGCATGC+TGG 0.511634 7_3:+29386458 None:intergenic
ACTCATTTGGACTTCTTCCA+AGG 0.530874 7_3:+29387300 None:intergenic
TTCAGCTGCAGCATCAATGA+TGG 0.531666 7_3:-29385458 Msa1100030:CDS
GCTATAACTGAGTGAAGACT+TGG 0.533345 7_3:+29384926 None:intergenic
GAGTTTGTGTCACTTTGCCT+TGG 0.535145 7_3:-29387317 Msa1100030:CDS
ATTGTTGATATTGTTAACAA+TGG 0.540285 7_3:+29384628 None:intergenic
AATGGAAAAGGATGTTTGAA+GGG 0.540904 7_3:-29384761 Msa1100030:CDS
GCAGGGTTGAATTTGAAACT+TGG 0.541526 7_3:-29384824 Msa1100030:CDS
AACTCACCAACACAACTCAA+TGG 0.541569 7_3:-29385361 Msa1100030:CDS
AAAATGTGCTAATGAGGAGA+TGG 0.542633 7_3:-29387507 Msa1100030:CDS
TATATACCTGTTTCCTAACT+GGG 0.545205 7_3:+29386450 None:intergenic
TCTTTCAAACAGATGAATGA+TGG 0.549199 7_3:-29386560 Msa1100030:intron
TCTTCAATCTCTGAACTGCT+AGG 0.554571 7_3:+29388488 None:intergenic
TTTAGACCATTGAGTTGTGT+TGG 0.558988 7_3:+29385355 None:intergenic
CTCTAAATATATGGTACCAT+CGG 0.560748 7_3:-29387192 Msa1100030:CDS
AAGGCAAAGTGACACAAACT+CGG 0.562482 7_3:+29387319 None:intergenic
TGTGAAATTTGGTTGTTGTG+TGG 0.564092 7_3:+29385153 None:intergenic
TTTGATGATGATAAGGATGA+AGG 0.564477 7_3:+29385226 None:intergenic
AGCCAAAGCTTGCCTTGAAG+GGG 0.565025 7_3:+29384979 None:intergenic
AGATGAATGATGGATGTCAA+TGG 0.566197 7_3:-29386550 Msa1100030:CDS
TGATTGCTCTACTGAACAAG+AGG 0.569404 7_3:-29388429 Msa1100030:CDS
TGTCAAAGAAACGAAGCTGA+AGG 0.576917 7_3:+29387417 None:intergenic
GCTGATGCTGTTACTTGAAG+AGG 0.585701 7_3:+29385496 None:intergenic
ATATTGTTAACAATGGATGG+AGG 0.596810 7_3:+29384635 None:intergenic
GTCAAAGAAACGAAGCTGAA+GGG 0.596848 7_3:+29387418 None:intergenic
TGGTGAGTTTCCAAAAGATG+TGG 0.607185 7_3:+29385375 None:intergenic
TACTGAACAAGAGGTTACAA+AGG 0.612360 7_3:-29388420 Msa1100030:intron
GGACAAGGATCAAACAATGG+TGG 0.624982 7_3:-29384881 Msa1100030:CDS
CTGATGCTGTTACTTGAAGA+GGG 0.633343 7_3:+29385497 None:intergenic
TCAAGTAACAGCATCAGCCA+TGG 0.634105 7_3:-29385491 Msa1100030:CDS
AAATGTGCTAATGAGGAGAT+GGG 0.639036 7_3:-29387506 Msa1100030:CDS
AGCTAAATGTGATACTCCCA+CGG 0.647058 7_3:-29387000 Msa1100030:intron
AGGCAAAGTGACACAAACTC+GGG 0.648244 7_3:+29387320 None:intergenic
GTTTCGTCGATTGTAGGACA+AGG 0.650226 7_3:-29384896 Msa1100030:CDS
AGCTGAAGTTGTATATGCCA+TGG 0.650411 7_3:+29385474 None:intergenic
AAATCAGATACTAACTCCGA+TGG 0.660110 7_3:+29387176 None:intergenic
TAGCTCAGAAGAATTACCAA+AGG 0.660407 7_3:-29387141 Msa1100030:CDS
GTAGGACAAGGATCAAACAA+TGG 0.686881 7_3:-29384884 Msa1100030:CDS
TGAATGATGGATGTCAATGG+AGG 0.707535 7_3:-29386547 Msa1100030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATACTTAAATTTAATT+TGG - chr7_3:29386196-29386215 Msa1100030:intron 10.0%
!!! ATTTTTTTTTTATGCTTATA+GGG + chr7_3:29387427-29387446 None:intergenic 10.0%
!!! TATTTTTTTTTTATGCTTAT+AGG + chr7_3:29387428-29387447 None:intergenic 10.0%
!! TCTATACAATAATATAAATA+AGG + chr7_3:29387455-29387474 None:intergenic 10.0%
!! AACAATAATAACAATAAATT+AGG - chr7_3:29387983-29388002 Msa1100030:intron 10.0%
!! ACAATAATAACAATAAATTA+GGG - chr7_3:29387984-29388003 Msa1100030:intron 10.0%
!!! TTTTCTAGTTTCAAATTTAT+TGG - chr7_3:29384928-29384947 Msa1100030:CDS 15.0%
!! AGTCATAAAAAGATTTAATA+AGG + chr7_3:29385262-29385281 None:intergenic 15.0%
!!! AATTTTATTTCTTCTTCATA+TGG - chr7_3:29385319-29385338 Msa1100030:CDS 15.0%
!! ATTATTATATATATAACACG+TGG + chr7_3:29385402-29385421 None:intergenic 15.0%
!!! TTATCCTTATTAATCTTTTT+AGG - chr7_3:29385433-29385452 Msa1100030:CDS 15.0%
!!! AAATTTTGCAATTTGTTTAT+AGG + chr7_3:29386710-29386729 None:intergenic 15.0%
!! TAAACAAATTGCAAAATTTA+TGG - chr7_3:29386711-29386730 Msa1100030:intron 15.0%
!! TATAGCATTTCATTAATAAT+AGG - chr7_3:29387215-29387234 Msa1100030:CDS 15.0%
!!! ATTTTTTGCTTTCAAAATAT+CGG + chr7_3:29387401-29387420 None:intergenic 15.0%
!!! TTGATGATTTGTTATGTATA+AGG - chr7_3:29384796-29384815 Msa1100030:CDS 20.0%
!! CAATATGACTGATTATATAT+AGG - chr7_3:29384988-29385007 Msa1100030:CDS 20.0%
!! ATGAACAAAACAATAATACA+TGG + chr7_3:29385124-29385143 None:intergenic 20.0%
!! ATGTCCTAAAAAGATTAATA+AGG + chr7_3:29385440-29385459 None:intergenic 20.0%
!! AGACAAAAAAGAAGAAAAAT+CGG + chr7_3:29386364-29386383 None:intergenic 20.0%
!!! ACTAATAAGAGATTTTTTTG+TGG + chr7_3:29386902-29386921 None:intergenic 20.0%
!!! TATCTTATGTTTTAAGAACT+AGG - chr7_3:29386946-29386965 Msa1100030:intron 20.0%
!!! CTGAAATCATATAAATTTTG+GGG + chr7_3:29387516-29387535 None:intergenic 20.0%
!!! CCTGAAATCATATAAATTTT+GGG + chr7_3:29387517-29387536 None:intergenic 20.0%
!!! ACCTGAAATCATATAAATTT+TGG + chr7_3:29387518-29387537 None:intergenic 20.0%
!! TTGTTGGAAACAAATTATTA+TGG + chr7_3:29387829-29387848 None:intergenic 20.0%
!! GAACAAAAACTAAGATTATT+TGG + chr7_3:29387923-29387942 None:intergenic 20.0%
!!! ATTGTTATTATTGTTCCAAA+TGG + chr7_3:29387978-29387997 None:intergenic 20.0%
!!! CTTGAGTTTTTTCAATATTA+GGG + chr7_3:29388030-29388049 None:intergenic 20.0%
!!! ACTTGAGTTTTTTCAATATT+AGG + chr7_3:29388031-29388050 None:intergenic 20.0%
!! ATATTGAAAAAACTCAAGTT+AGG - chr7_3:29388032-29388051 Msa1100030:intron 20.0%
!!! AACAATTTGTTGAATCAAAA+TGG - chr7_3:29388316-29388335 Msa1100030:intron 20.0%
!! ATTGTTGATATTGTTAACAA+TGG + chr7_3:29388470-29388489 None:intergenic 20.0%
! AGAAAAAATTAGTGAGGATT+AGG + chr7_3:29384712-29384731 None:intergenic 25.0%
!! ATAACTTTTAACAGCTAACA+AGG + chr7_3:29385170-29385189 None:intergenic 25.0%
!! TGGATTAGACTCTAAATATA+TGG - chr7_3:29385894-29385913 Msa1100030:intron 25.0%
! GGTCACTATATCATAAAAAT+TGG - chr7_3:29386217-29386236 Msa1100030:intron 25.0%
! GATAATGCATAATATATGCA+AGG - chr7_3:29386855-29386874 Msa1100030:intron 25.0%
! TTATTAAACCTATAATCCAG+AGG + chr7_3:29386982-29387001 None:intergenic 25.0%
! AAAAGAAGTTGAATCAATTG+TGG - chr7_3:29387054-29387073 Msa1100030:CDS 25.0%
! ATAGGTTTAATTGGTTGAAT+CGG + chr7_3:29387145-29387164 None:intergenic 25.0%
! ATTCAACCAATTAAACCTAT+TGG - chr7_3:29387145-29387164 Msa1100030:CDS 25.0%
! TTTGAACCAATAGGTTTAAT+TGG + chr7_3:29387154-29387173 None:intergenic 25.0%
! AATGAGGTATAACAAGTAAT+GGG - chr7_3:29387249-29387268 Msa1100030:CDS 25.0%
! CCCAAAATTTATATGATTTC+AGG - chr7_3:29387514-29387533 Msa1100030:CDS 25.0%
! ATCTTAATCACAACATATGA+AGG - chr7_3:29387563-29387582 Msa1100030:intron 25.0%
!! AACAAATTATTATGGTTTGG+TGG + chr7_3:29387821-29387840 None:intergenic 25.0%
! GGAAACAAATTATTATGGTT+TGG + chr7_3:29387824-29387843 None:intergenic 25.0%
!! TTTTCCTGGAAATGATTAAA+AGG + chr7_3:29388058-29388077 None:intergenic 25.0%
!!! GATTTTGATAGAAATTTTCC+TGG + chr7_3:29388072-29388091 None:intergenic 25.0%
!! AAATTGTTTGAAACCATTTG+AGG + chr7_3:29388304-29388323 None:intergenic 25.0%
! TTGTTGAATCAAAATGGAAA+AGG - chr7_3:29388322-29388341 Msa1100030:intron 25.0%
! TTGATATTGTTAACAATGGA+TGG + chr7_3:29388466-29388485 None:intergenic 25.0%
AAATTAGTGAGGATTAGGAT+TGG + chr7_3:29384707-29384726 None:intergenic 30.0%
TGCACAAGAAAAAATTAGTG+AGG + chr7_3:29384718-29384737 None:intergenic 30.0%
!!! AAGAAGTTTTGTTGTTGTAG+AGG + chr7_3:29384910-29384929 None:intergenic 30.0%
TAGAGAGATTGTTTGTGTTT+AGG - chr7_3:29384963-29384982 Msa1100030:CDS 30.0%
ATGCTGTACAATATTGTTGT+AGG - chr7_3:29385022-29385041 Msa1100030:CDS 30.0%
TCTTCTTCATATGGTATAGT+TGG - chr7_3:29385328-29385347 Msa1100030:CDS 30.0%
!! TCATAGCCTAGTATTTTTGT+CGG - chr7_3:29385488-29385507 Msa1100030:CDS 30.0%
ATCATACCGACAAAAATACT+AGG + chr7_3:29385497-29385516 None:intergenic 30.0%
! CTCCTATGATTTTGAATTCT+AGG - chr7_3:29385555-29385574 Msa1100030:CDS 30.0%
CTCCTAGAATTCAAAATCAT+AGG + chr7_3:29385560-29385579 None:intergenic 30.0%
! CTATGATTTTGAATTCTAGG+AGG - chr7_3:29385558-29385577 Msa1100030:CDS 30.0%
CAAACTAAAATGTGCTAATG+AGG - chr7_3:29385582-29385601 Msa1100030:intron 30.0%
GCTTCTTTCTTATACTCATT+TGG + chr7_3:29385811-29385830 None:intergenic 30.0%
!! CTTTCTCTTTAGGTTTGTTA+GGG + chr7_3:29385849-29385868 None:intergenic 30.0%
! TCTTTCTCTTTAGGTTTGTT+AGG + chr7_3:29385850-29385869 None:intergenic 30.0%
ACCTAAAGAGAAAGAAGATA+TGG - chr7_3:29385855-29385874 Msa1100030:intron 30.0%
TCCATATCTTCTTTCTCTTT+AGG + chr7_3:29385859-29385878 None:intergenic 30.0%
CTCTAAATATATGGTACCAT+CGG - chr7_3:29385903-29385922 Msa1100030:intron 30.0%
AATTCTTCTGAGCTATTCAT+TGG + chr7_3:29385949-29385968 None:intergenic 30.0%
GAAGTTGAAGTTGAAGAAAA+AGG - chr7_3:29385976-29385995 Msa1100030:intron 30.0%
! AATTAGTTGATACTAACCGT+GGG + chr7_3:29386114-29386133 None:intergenic 30.0%
! TAATTAGTTGATACTAACCG+TGG + chr7_3:29386115-29386134 None:intergenic 30.0%
TCTTTCAAACAGATGAATGA+TGG - chr7_3:29386535-29386554 Msa1100030:CDS 30.0%
TATGGACAAAAGATAGCAAA+AGG - chr7_3:29386574-29386593 Msa1100030:intron 30.0%
TATATACCTGTTTCCTAACT+GGG + chr7_3:29386648-29386667 None:intergenic 30.0%
ATGCATAATATATGCAAGGT+TGG - chr7_3:29386859-29386878 Msa1100030:intron 30.0%
TGCATAATATATGCAAGGTT+GGG - chr7_3:29386860-29386879 Msa1100030:intron 30.0%
! TAAGTTGAACTACGTTGAAT+CGG - chr7_3:29386999-29387018 Msa1100030:intron 30.0%
!! ATCCAATTTTAAGTAACCGA+AGG - chr7_3:29387081-29387100 Msa1100030:CDS 30.0%
AACCTTCGGTTACTTAAAAT+TGG + chr7_3:29387086-29387105 None:intergenic 30.0%
TAGGTTTAATTGGTTGAATC+GGG + chr7_3:29387144-29387163 None:intergenic 30.0%
ATAGGTTGTTCAATACAATG+AGG - chr7_3:29387233-29387252 Msa1100030:CDS 30.0%
CAATGAGGTATAACAAGTAA+TGG - chr7_3:29387248-29387267 Msa1100030:CDS 30.0%
GTGTTCTTGATTGTTCATAT+TGG + chr7_3:29387778-29387797 None:intergenic 30.0%
!! GGAATGAAGAAATGTTGTTT+TGG + chr7_3:29387800-29387819 None:intergenic 30.0%
!! TTTGATGATGATAAGGATGA+AGG + chr7_3:29387872-29387891 None:intergenic 30.0%
!! AGCTATGTTTGATGATGATA+AGG + chr7_3:29387879-29387898 None:intergenic 30.0%
AGATTATTTGGCGAAAATCT+CGG + chr7_3:29387911-29387930 None:intergenic 30.0%
GATGATATTGGTGTGAAATT+TGG + chr7_3:29387956-29387975 None:intergenic 30.0%
TTGTTCCAAATGGATGATAT+TGG + chr7_3:29387968-29387987 None:intergenic 30.0%
CAAGAAGAAAATAGAGAGAA+TGG - chr7_3:29388241-29388260 Msa1100030:intron 30.0%
GAAAATAGAGAGAATGGTTT+AGG - chr7_3:29388247-29388266 Msa1100030:intron 30.0%
AAATGGAAAAGGATGTTTGA+AGG - chr7_3:29388333-29388352 Msa1100030:intron 30.0%
AATGGAAAAGGATGTTTGAA+GGG - chr7_3:29388334-29388353 Msa1100030:intron 30.0%
!!! TTTTTAGCTTGTGAACTTGT+TGG + chr7_3:29388382-29388401 None:intergenic 30.0%
ATATTGTTAACAATGGATGG+AGG + chr7_3:29388463-29388482 None:intergenic 30.0%
AGCAATCAACTTCAACTTCA+TGG + chr7_3:29384654-29384673 None:intergenic 35.0%
TACTGAACAAGAGGTTACAA+AGG - chr7_3:29384675-29384694 Msa1100030:CDS 35.0%
AAAATGTGCTAATGAGGAGA+TGG - chr7_3:29385588-29385607 Msa1100030:intron 35.0%
AAATGTGCTAATGAGGAGAT+GGG - chr7_3:29385589-29385608 Msa1100030:intron 35.0%
ATGGAAGTTAACCTAAGTCT+TGG - chr7_3:29385874-29385893 Msa1100030:intron 35.0%
TAGAGTCTAATCCAAGACTT+AGG + chr7_3:29385888-29385907 None:intergenic 35.0%
AAATCAGATACTAACTCCGA+TGG + chr7_3:29385922-29385941 None:intergenic 35.0%
TAGCTCAGAAGAATTACCAA+AGG - chr7_3:29385954-29385973 Msa1100030:intron 35.0%
TCTTCAACTTCAACTTCCTT+TGG + chr7_3:29385973-29385992 None:intergenic 35.0%
!! TCGTCACTAATTTTGATGCT+AGG - chr7_3:29386314-29386333 Msa1100030:intron 35.0%
!! AGATGAATGATGGATGTCAA+TGG - chr7_3:29386545-29386564 Msa1100030:CDS 35.0%
GTATATACCTGTTTCCTAAC+TGG + chr7_3:29386649-29386668 None:intergenic 35.0%
GCATAATATATGCAAGGTTG+GGG - chr7_3:29386861-29386880 Msa1100030:intron 35.0%
!!! AGAGATTTTTTTGTGGTGTC+CGG + chr7_3:29386895-29386914 None:intergenic 35.0%
GTTAAACTGTGATCAACCTT+CGG + chr7_3:29387100-29387119 None:intergenic 35.0%
GGTTTCAGATTTGAACCAAT+AGG + chr7_3:29387163-29387182 None:intergenic 35.0%
CAATGAACGACAAACAAATG+AGG + chr7_3:29387316-29387335 None:intergenic 35.0%
TGATCTTAGAGTTTGTGAAG+TGG - chr7_3:29387340-29387359 Msa1100030:CDS 35.0%
GATCTTAGAGTTTGTGAAGT+GGG - chr7_3:29387341-29387360 Msa1100030:CDS 35.0%
! CACAACAATTCCACATCTTT+TGG - chr7_3:29387710-29387729 Msa1100030:intron 35.0%
! TTTAGACCATTGAGTTGTGT+TGG + chr7_3:29387743-29387762 None:intergenic 35.0%
ATAAGGATGAAGGAGAAGTT+AGG + chr7_3:29387862-29387881 None:intergenic 35.0%
TGTGAAATTTGGTTGTTGTG+TGG + chr7_3:29387945-29387964 None:intergenic 35.0%
TCACACCAATATCATCCATT+TGG - chr7_3:29387960-29387979 Msa1100030:intron 35.0%
! TAGGCCTTTTAATCATTTCC+AGG - chr7_3:29388051-29388070 Msa1100030:intron 35.0%
TCTTCAATCTCTGAACTGCT+AGG + chr7_3:29384610-29384629 None:intergenic 40.0%
TGATTGCTCTACTGAACAAG+AGG - chr7_3:29384666-29384685 Msa1100030:CDS 40.0%
GTCAAAGAAACGAAGCTGAA+GGG + chr7_3:29385680-29385699 None:intergenic 40.0%
TGTCAAAGAAACGAAGCTGA+AGG + chr7_3:29385681-29385700 None:intergenic 40.0%
AAGGCAAAGTGACACAAACT+CGG + chr7_3:29385779-29385798 None:intergenic 40.0%
ACTCATTTGGACTTCTTCCA+AGG + chr7_3:29385798-29385817 None:intergenic 40.0%
! GAAACTCTGACTCTTTTAGC+AGG + chr7_3:29386069-29386088 None:intergenic 40.0%
AGCTAAATGTGATACTCCCA+CGG - chr7_3:29386095-29386114 Msa1100030:intron 40.0%
!! TGAATGATGGATGTCAATGG+AGG - chr7_3:29386548-29386567 Msa1100030:CDS 40.0%
GGATGTCAATGGAGGAAATA+TGG - chr7_3:29386556-29386575 Msa1100030:intron 40.0%
!!! GAGATTTTTTTGTGGTGTCC+GGG + chr7_3:29386894-29386913 None:intergenic 40.0%
GAAGAACACCTCTGGATTAT+AGG - chr7_3:29386971-29386990 Msa1100030:intron 40.0%
TAACCAACCAACAAGCTTGT+CGG - chr7_3:29387116-29387135 Msa1100030:CDS 40.0%
GGTAAACAATCTTCTCCAAG+CGG - chr7_3:29387365-29387384 Msa1100030:CDS 40.0%
ACATGTCATCAGCACATCTT+TGG + chr7_3:29387541-29387560 None:intergenic 40.0%
! CTGATGCTGTTACTTGAAGA+GGG + chr7_3:29387601-29387620 None:intergenic 40.0%
AGCTGAAGTTGTATATGCCA+TGG + chr7_3:29387624-29387643 None:intergenic 40.0%
TGGTGAGTTTCCAAAAGATG+TGG + chr7_3:29387723-29387742 None:intergenic 40.0%
AACTCACCAACACAACTCAA+TGG - chr7_3:29387734-29387753 Msa1100030:intron 40.0%
GTTAGGTCAAGAGTGATTGT+TGG + chr7_3:29387845-29387864 None:intergenic 40.0%
CAAGTTATCAAACCCCTTCA+AGG - chr7_3:29388104-29388123 Msa1100030:intron 40.0%
GCTATAACTGAGTGAAGACT+TGG + chr7_3:29388172-29388191 None:intergenic 40.0%
GTAGGACAAGGATCAAACAA+TGG - chr7_3:29388211-29388230 Msa1100030:intron 40.0%
! GCAGGGTTGAATTTGAAACT+TGG - chr7_3:29388271-29388290 Msa1100030:intron 40.0%
! ACTTGGTGAGTATCCTCAAA+TGG - chr7_3:29388288-29388307 Msa1100030:intron 40.0%
GAGACAGAAAATGGCAATGA+AGG + chr7_3:29388421-29388440 None:intergenic 40.0%
CTGCTCTTAGAGACAGAAAA+TGG + chr7_3:29388430-29388449 None:intergenic 40.0%
AGGCAAAGTGACACAAACTC+GGG + chr7_3:29385778-29385797 None:intergenic 45.0%
!! GAGTTTGTGTCACTTTGCCT+TGG - chr7_3:29385778-29385797 Msa1100030:intron 45.0%
CGATAGTATGCTCTTGGACA+TGG + chr7_3:29386604-29386623 None:intergenic 45.0%
GTGCAACGATAGTATGCTCT+TGG + chr7_3:29386610-29386629 None:intergenic 45.0%
! ACCAGTGAGATTAGCTCAGT+TGG - chr7_3:29386828-29386847 Msa1100030:intron 45.0%
ACCAACTGAGCTAATCTCAC+TGG + chr7_3:29386832-29386851 None:intergenic 45.0%
! ACTAGGTTGAAGAACACCTC+TGG - chr7_3:29386963-29386982 Msa1100030:intron 45.0%
CTTAGAGTTTGTGAAGTGGG+TGG - chr7_3:29387344-29387363 Msa1100030:CDS 45.0%
! GCTGATGCTGTTACTTGAAG+AGG + chr7_3:29387602-29387621 None:intergenic 45.0%
TCAAGTAACAGCATCAGCCA+TGG - chr7_3:29387604-29387623 Msa1100030:intron 45.0%
TTCAGCTGCAGCATCAATGA+TGG - chr7_3:29387637-29387656 Msa1100030:intron 45.0%
GCAGCATCAATGATGGTATC+AGG - chr7_3:29387644-29387663 Msa1100030:intron 45.0%
! GTTTCGTCGATTGTAGGACA+AGG - chr7_3:29388199-29388218 Msa1100030:intron 45.0%
GGACAAGGATCAAACAATGG+TGG - chr7_3:29388214-29388233 Msa1100030:intron 45.0%
AGAGAGAATGGTTTAGGTGC+AGG - chr7_3:29388253-29388272 Msa1100030:intron 45.0%
GAGAGAATGGTTTAGGTGCA+GGG - chr7_3:29388254-29388273 Msa1100030:intron 45.0%
!! ATAAAAAATTTAAATAATGA+TGG + chr7_3:29386394-29386413 None:intergenic 5.0%
!! TATAAAAAAATATATATCAA+TGG + chr7_3:29387184-29387203 None:intergenic 5.0%
TGTTTCCTAACTGGGCATGC+TGG + chr7_3:29386640-29386659 None:intergenic 50.0%
AGCATGCCCAGTTAGGAAAC+AGG - chr7_3:29386639-29386658 Msa1100030:intron 50.0%
CAAGGTTGGGGTTTGAATCC+CGG - chr7_3:29386873-29386892 Msa1100030:intron 50.0%
!! GAACCGACAAGCTTGTTGGT+TGG + chr7_3:29387122-29387141 None:intergenic 50.0%
ATAACGTGACAACCTCCGCT+AGG - chr7_3:29387280-29387299 Msa1100030:CDS 50.0%
ATCGGTGTGTTCTATCCGCT+TGG + chr7_3:29387383-29387402 None:intergenic 50.0%
AACCCCTTCAAGGCAAGCTT+TGG - chr7_3:29388114-29388133 Msa1100030:intron 50.0%
AGCCAAAGCTTGCCTTGAAG+GGG + chr7_3:29388119-29388138 None:intergenic 50.0%
CAGCCAAAGCTTGCCTTGAA+GGG + chr7_3:29388120-29388139 None:intergenic 50.0%
TCAGCCAAAGCTTGCCTTGA+AGG + chr7_3:29388121-29388140 None:intergenic 50.0%
! GCTGCAGTTTCGTCGATTGT+AGG - chr7_3:29388193-29388212 Msa1100030:intron 50.0%
TTGCACCAGCATGCCCAGTT+AGG - chr7_3:29386632-29386651 Msa1100030:intron 55.0%
TCGGGAACCGACAAGCTTGT+TGG + chr7_3:29387126-29387145 None:intergenic 55.0%
TGAGGTAGCTCGCAACCTAG+CGG + chr7_3:29387298-29387317 None:intergenic 55.0%
GGTAGCTCGCAACCTAGCGG+AGG + chr7_3:29387295-29387314 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 29384598 29388519 29384598 ID=Msa1100030;Name=Msa1100030
chr7_3 mRNA 29384598 29388519 29384598 ID=Msa1100030-mRNA-1;Parent=Msa1100030;Name=Msa1100030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.75|1|1|4|0|578
chr7_3 exon 29388421 29388519 29388421 ID=Msa1100030-mRNA-1:exon:6214;Parent=Msa1100030-mRNA-1
chr7_3 exon 29387001 29387540 29387001 ID=Msa1100030-mRNA-1:exon:6213;Parent=Msa1100030-mRNA-1
chr7_3 exon 29386457 29386570 29386457 ID=Msa1100030-mRNA-1:exon:6212;Parent=Msa1100030-mRNA-1
chr7_3 exon 29384598 29385581 29384598 ID=Msa1100030-mRNA-1:exon:6211;Parent=Msa1100030-mRNA-1
chr7_3 CDS 29388421 29388519 29388421 ID=Msa1100030-mRNA-1:cds;Parent=Msa1100030-mRNA-1
chr7_3 CDS 29387001 29387540 29387001 ID=Msa1100030-mRNA-1:cds;Parent=Msa1100030-mRNA-1
chr7_3 CDS 29386457 29386570 29386457 ID=Msa1100030-mRNA-1:cds;Parent=Msa1100030-mRNA-1
chr7_3 CDS 29384598 29385581 29384598 ID=Msa1100030-mRNA-1:cds;Parent=Msa1100030-mRNA-1
Gene Sequence

>Msa1100030

ATGTCGAGTCCTAGCAGTTCAGAGATTGAAGAGAAAAGAGTTACTTCAATTATCCATGAAGTTGAAGTTGATTGCTCTACTGAACAAGAGGTTACAAAGGAGGACAAACTAAAATGTGCTAATGAGGAGATGGGTGACGTAAAAGAAGAAAACGAAAGATTGAAGACGATGCTGTCACGAGTTGAAAAAGACTACAATTCCCTTCAGCTTCGTTTCTTTGACATTGTTAACAAAGACGTTTCTATGAAAGATATAGAAGATTCGTCAACTAATTCACACGAAGAAATCGATGAAGAACCCGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCAAAAAACATTGAAAACCCTAACAAACCTAAAGAGAAAGAAGATATGGAAGTTAACCTAAGTCTTGGATTAGACTCTAAATATATGGTACCATCGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAGCAATATTTTCAACAAATAAATCAACAAAAGTGATAAATGTAAATGATGAGATTTCAGAACTATTGCCTGCTAAAAGAGTCAGAGTTTCTGTGAGAGCTAAATGTGATACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTCCAAAGATGTGCTGATGACATGTCAATCTTAATCACAACATATGAAGGAACACACAATCACCCTCTTCAAGTAACAGCATCAGCCATGGCATATACAACTTCAGCTGCAGCATCAATGATGGTATCAGGTTCATCAACATCATCATCATCACATCAAAATCAAAATGTTCATCACAACAATTCCACATCTTTTGGAAACTCACCAACACAACTCAATGGTCTAAATTTCAATCATCACCAATATGAACAATCAAGAACACCAAAACAACATTTCTTCATTCCACCAAACCATAATAATTTGTTTCCAACAATCACTCTTGACCTAACTTCTCCTTCATCCTTATCATCATCAAACATAGCTTCAAATGTTCCGAGATTTTCGCCAAATAATCTTAGTTTTTGTTCCACACAACAACCAAATTTCACACCAATATCATCCATTTGGAACAATAATAACAATAAATTAGGGTTTATTAACAATAACTCAAACCCTAATATTGAAAAAACTCAAGTTAGGCCTTTTAATCATTTCCAGGAAAATTTCTATCAAAATCAAAATTGCATGACAAGTTATCAAACCCCTTCAAGGCAAGCTTTGGCTGAAACAATAAGCAAAGCAATAAGCACTGATCCAAGTCTTCACTCAGTTATAGCTGCTGCAGTTTCGTCGATTGTAGGACAAGGATCAAACAATGGTGGAAAGCAAGAAGAAAATAGAGAGAATGGTTTAGGTGCAGGGTTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGAAAAGGATGTTTGAAGGGATCATACTTCAAAAGATTGTCACCAACAAGTTCACAAGCTAAAAATTTCATGCTTCTTCAACCTTCATTGCCATTTTCTGTCTCTAAGAGCAGTGCTAGTAAACCTCCATCCATTGTTAACAATATCAACAATTTTGATCTAGATAAGAACAAACATAATTAG

Protein sequence

>Msa1100030

MSSPSSSEIEEKRVTSIIHEVEVDCSTEQEVTKEDKLKCANEEMGDVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTNSHEEIDEEPEFVSLCLGRSPNEYKKEAKNIENPNKPKEKEDMEVNLSLGLDSKYMVPSELVSDLSPMNSSEELPKEVEVEEKGAIFSTNKSTKVINVNDEISELLPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSGSSTSSSSHQNQNVHHNNSTSFGNSPTQLNGLNFNHHQYEQSRTPKQHFFIPPNHNNLFPTITLDLTSPSSLSSSNIASNVPRFSPNNLSFCSTQQPNFTPISSIWNNNNNKLGFINNNSNPNIEKTQVRPFNHFQENFYQNQNCMTSYQTPSRQALAETISKAISTDPSLHSVIAAAVSSIVGQGSNNGGKQEENRENGLGAGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTSSQAKNFMLLQPSLPFSVSKSSASKPPSIVNNINNFDLDKNKHN*