AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0351520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351520 MtrunA17_Chr3g0086641 98.649 370 4 1 1 369 1 370 0.0 741
Msa0351520 MtrunA17_Chr2g0285061 79.387 359 72 2 12 369 8 365 0.0 597
Msa0351520 MtrunA17_Chr8g0380041 75.000 360 86 4 12 369 6 363 0.0 559
Msa0351520 MtrunA17_Chr3g0077581 52.486 362 163 6 15 369 11 370 2.35e-128 373
Msa0351520 MtrunA17_Chr3g0077571 52.408 353 162 5 17 369 11 357 2.86e-128 372
Msa0351520 MtrunA17_Chr8g0380031 46.133 362 171 6 15 369 62 406 2.30e-111 331
Msa0351520 MtrunA17_Chr4g0017431 44.167 360 192 6 15 369 8 363 3.54e-110 326
Msa0351520 MtrunA17_Chr3g0131321 44.932 365 184 8 18 368 7 368 1.43e-107 320
Msa0351520 MtrunA17_Chr2g0284951 45.455 363 178 8 13 368 5 354 8.58e-105 313
Msa0351520 MtrunA17_Chr2g0284991 43.869 367 191 7 9 368 1 359 1.22e-103 310
Msa0351520 MtrunA17_Chr3g0085881 45.455 341 172 6 29 368 25 352 1.98e-103 308
Msa0351520 MtrunA17_Chr2g0284921 45.294 340 173 7 34 369 31 361 1.80e-100 301
Msa0351520 MtrunA17_Chr2g0285001 43.478 368 195 9 5 368 2 360 1.68e-96 292
Msa0351520 MtrunA17_Chr2g0284941 43.132 364 171 8 12 368 4 338 2.13e-95 288
Msa0351520 MtrunA17_Chr2g0294301 40.571 350 199 7 24 368 22 367 3.13e-84 260
Msa0351520 MtrunA17_Chr5g0434621 39.359 343 201 6 13 352 1 339 3.53e-83 257
Msa0351520 MtrunA17_Chr2g0294311 38.032 376 212 10 6 368 5 372 2.36e-80 250
Msa0351520 MtrunA17_Chr4g0068441 37.669 369 217 8 5 368 7 367 5.03e-80 249
Msa0351520 MtrunA17_Chr5g0396511 37.651 332 202 4 39 367 48 377 2.90e-74 235
Msa0351520 MtrunA17_Chr7g0275011 38.810 353 206 7 17 364 14 361 2.26e-72 229
Msa0351520 MtrunA17_Chr1g0189901 40.566 318 180 6 38 350 32 345 1.09e-71 228
Msa0351520 MtrunA17_Chr7g0274991 39.296 341 195 8 33 366 27 362 2.42e-71 227
Msa0351520 MtrunA17_Chr7g0275021 39.198 324 188 6 30 348 27 346 3.78e-71 226
Msa0351520 MtrunA17_Chr8g0374101 36.873 339 205 5 39 369 39 376 1.97e-70 225
Msa0351520 MtrunA17_Chr6g0457921 38.329 347 196 8 16 350 10 350 6.01e-70 223
Msa0351520 MtrunA17_Chr1g0189931 38.855 332 193 7 38 364 33 359 2.49e-69 222
Msa0351520 MtrunA17_Chr1g0182811 36.901 355 215 7 6 355 4 354 2.96e-68 219
Msa0351520 MtrunA17_Chr3g0092131 37.061 313 188 6 39 346 25 333 4.58e-68 218
Msa0351520 MtrunA17_Chr3g0099151 36.243 378 223 10 2 369 53 422 6.95e-68 219
Msa0351520 MtrunA17_Chr3g0099161 36.096 374 217 9 5 366 60 423 7.00e-68 220
Msa0351520 MtrunA17_Chr4g0008851 36.994 346 205 8 5 345 6 343 2.85e-67 216
Msa0351520 MtrunA17_Chr4g0060811 36.538 312 191 5 39 346 29 337 5.97e-67 216
Msa0351520 MtrunA17_Chr5g0444401 36.288 361 214 9 15 366 6 359 9.93e-67 215
Msa0351520 MtrunA17_Chr7g0275001 36.464 362 217 9 14 369 4 358 2.34e-66 214
Msa0351520 MtrunA17_Chr1g0156931 34.030 335 212 6 8 339 14 342 3.53e-66 213
Msa0351520 MtrunA17_Chr1g0156921 34.421 337 214 5 8 339 11 345 9.75e-65 210
Msa0351520 MtrunA17_Chr1g0156901 35.629 334 207 6 11 339 22 352 1.55e-63 207
Msa0351520 MtrunA17_Chr3g0085231 34.066 364 216 8 9 368 6 349 3.28e-62 203
Msa0351520 MtrunA17_Chr8g0371491 34.758 351 214 7 8 354 7 346 3.35e-62 203
Msa0351520 MtrunA17_Chr5g0438621 35.799 338 199 10 16 344 10 338 4.22e-62 202
Msa0351520 MtrunA17_Chr3g0142921 35.423 319 197 7 27 339 24 339 7.62e-62 202
Msa0351520 MtrunA17_Chr1g0156911 34.891 321 203 5 28 345 28 345 1.54e-61 201
Msa0351520 MtrunA17_Chr2g0320671 34.328 335 213 6 16 346 9 340 2.83e-61 200
Msa0351520 MtrunA17_Chr1g0189891 34.595 370 220 11 8 369 1 356 4.84e-61 200
Msa0351520 MtrunA17_Chr7g0215961 34.226 336 203 7 12 345 10 329 5.74e-61 200
Msa0351520 MtrunA17_Chr1g0156891 34.706 340 213 7 6 339 10 346 8.94e-61 199
Msa0351520 MtrunA17_Chr3g0105401 35.608 337 208 7 15 346 7 339 9.42e-61 199
Msa0351520 MtrunA17_Chr4g0027521 35.569 343 200 9 29 361 19 350 1.19e-60 199
Msa0351520 MtrunA17_Chr5g0438631 38.438 320 181 10 35 345 26 338 1.20e-60 199
Msa0351520 MtrunA17_Chr3g0099231 34.770 348 204 9 34 369 25 361 1.45e-60 199
Msa0351520 MtrunA17_Chr3g0120861 35.849 318 195 7 34 346 35 348 9.87e-60 197
Msa0351520 MtrunA17_Chr5g0438641 37.003 327 191 9 28 347 25 343 2.55e-59 195
Msa0351520 MtrunA17_Chr2g0330781 36.533 323 191 9 32 346 26 342 6.43e-59 194
Msa0351520 MtrunA17_Chr8g0341001 33.923 339 212 8 15 346 10 343 2.11e-58 193
Msa0351520 MtrunA17_Chr3g0142941 33.016 315 205 5 28 339 38 349 6.62e-58 192
Msa0351520 MtrunA17_Chr5g0420811 33.043 345 203 12 16 350 10 336 3.73e-56 187
Msa0351520 MtrunA17_Chr5g0405831 34.516 310 195 6 35 339 41 347 9.90e-56 186
Msa0351520 MtrunA17_Chr5g0405821 35.048 311 193 7 35 339 41 348 1.41e-55 186
Msa0351520 MtrunA17_Chr2g0283191 30.704 355 225 10 1 339 1 350 3.30e-55 185
Msa0351520 MtrunA17_Chr5g0432101 32.948 346 221 8 9 347 5 346 5.14e-54 182
Msa0351520 MtrunA17_Chr8g0371481 31.056 322 216 5 36 353 40 359 1.33e-51 176
Msa0351520 MtrunA17_Chr8g0371471 29.586 338 231 6 15 348 19 353 1.94e-50 172
Msa0351520 MtrunA17_Chr4g0046151 32.353 340 210 10 12 339 15 346 8.33e-50 171
Msa0351520 MtrunA17_Chr8g0370951 30.811 370 239 9 10 368 4 367 1.79e-47 165
Msa0351520 MtrunA17_Chr2g0301641 35.191 341 197 13 39 366 45 374 8.63e-47 164
Msa0351520 MtrunA17_Chr5g0437421 31.692 325 202 9 34 345 29 346 1.10e-46 162
Msa0351520 MtrunA17_Chr8g0370981 30.900 411 219 12 14 367 15 417 6.64e-46 162
Msa0351520 MtrunA17_Chr8g0344941 29.394 330 221 6 17 339 21 345 2.77e-45 159
Msa0351520 MtrunA17_Chr8g0344931 31.940 335 212 9 39 369 39 361 4.21e-45 158
Msa0351520 MtrunA17_Chr8g0349321 32.198 323 198 8 39 352 39 349 7.01e-45 158
Msa0351520 MtrunA17_Chr8g0349341 30.387 362 229 9 1 352 1 349 8.74e-45 157
Msa0351520 MtrunA17_Chr6g0459921 30.888 259 173 5 113 369 107 361 8.08e-43 152
Msa0351520 MtrunA17_Chr1g0157001 31.761 318 194 8 42 352 41 342 2.22e-42 151
Msa0351520 MtrunA17_Chr6g0455661 33.613 238 141 5 145 369 239 472 3.38e-41 150
Msa0351520 MtrunA17_Chr6g0455661 46.721 122 60 2 13 130 3 123 1.05e-25 107
Msa0351520 MtrunA17_Chr2g0284931 34.979 243 130 6 129 369 4 220 8.30e-41 143
Msa0351520 MtrunA17_Chr8g0349301 32.384 281 175 7 39 316 39 307 5.41e-39 141
Msa0351520 MtrunA17_Chr8g0349331 26.862 376 223 8 1 368 1 332 2.86e-36 134
Msa0351520 MtrunA17_Chr8g0370961 30.435 230 145 5 131 355 13 232 4.24e-35 129
Msa0351520 MtrunA17_Chr5g0440501 28.163 245 165 4 135 368 6 250 5.25e-32 120
Msa0351520 MtrunA17_Chr7g0275291 27.792 385 240 14 1 361 1 371 8.12e-32 123
Msa0351520 MtrunA17_Chr2g0285041 43.548 124 68 2 90 211 1 124 1.43e-31 116
Msa0351520 MtrunA17_Chr6g0450721 28.150 373 233 10 6 361 1 355 3.28e-31 121
Msa0351520 MtrunA17_Chr1g0160011 28.424 387 235 15 4 365 11 380 3.42e-31 122
Msa0351520 MtrunA17_Chr7g0229591 37.374 198 114 6 15 205 4 198 1.45e-30 115
Msa0351520 MtrunA17_Chr4g0027571 31.579 209 140 3 138 345 3 209 4.37e-30 115
Msa0351520 MtrunA17_Chr6g0450731 27.249 378 237 10 1 361 1 357 5.55e-30 118
Msa0351520 MtrunA17_Chr1g0160031 28.533 368 222 13 3 345 10 361 1.30e-29 117
Msa0351520 MtrunA17_Chr7g0254461 26.750 400 244 13 1 363 2 389 1.93e-29 117
Msa0351520 MtrunA17_Chr8g0347751 26.884 398 237 15 5 369 8 384 3.19e-29 116
Msa0351520 MtrunA17_Chr1g0160101 28.363 342 198 10 36 345 41 367 1.09e-28 115
Msa0351520 MtrunA17_Chr1g0159991 27.792 385 230 12 13 365 10 378 2.88e-28 114
Msa0351520 MtrunA17_Chr1g0178941 26.087 345 204 12 39 361 42 357 3.50e-28 113
Msa0351520 MtrunA17_Chr6g0450701 28.647 377 224 13 1 348 1 361 3.00e-27 110
Msa0351520 MtrunA17_Chr6g0450711 26.598 391 242 10 1 361 82 457 3.82e-27 111
Msa0351520 MtrunA17_Chr8g0381581 27.177 379 225 12 8 351 11 373 1.95e-26 108
Msa0351520 MtrunA17_Chr1g0159971 28.184 369 215 11 12 345 18 371 8.69e-26 107
Msa0351520 MtrunA17_Chr1g0159981 27.013 385 233 13 13 365 20 388 2.13e-25 105
Msa0351520 MtrunA17_Chr6g0469511 46.087 115 58 3 32 143 25 138 1.48e-24 97.8
Msa0351520 MtrunA17_Chr2g0283511 27.568 370 229 15 1 346 1 355 1.91e-24 103
Msa0351520 MtrunA17_Chr1g0178931 26.791 321 188 12 39 341 39 330 2.10e-24 102
Msa0351520 MtrunA17_Chr7g0271551 26.531 343 212 11 39 361 38 360 2.64e-24 102
Msa0351520 MtrunA17_Chr8g0352901 27.397 365 226 11 13 348 1 355 4.02e-24 102
Msa0351520 MtrunA17_Chr7g0226941 26.705 352 223 9 36 361 32 374 1.09e-23 100
Msa0351520 MtrunA17_Chr1g0189911 34.483 145 92 3 223 366 1 143 4.13e-23 94.0
Msa0351520 MtrunA17_Chr7g0226911 24.000 400 251 13 9 369 1 386 6.80e-23 99.0
Msa0351520 MtrunA17_Chr7g0226931 23.821 403 251 13 6 361 1 394 7.23e-23 99.0
Msa0351520 MtrunA17_Chr4g0027561 42.500 120 64 3 12 128 7 124 2.31e-22 92.0
Msa0351520 MtrunA17_Chr2g0317261 24.716 352 234 11 12 347 3 339 4.04e-22 96.3
Msa0351520 MtrunA17_Chr7g0273101 24.225 355 232 8 36 361 28 374 4.66e-22 96.3
Msa0351520 MtrunA17_Chr2g0317271 25.617 324 212 9 38 347 31 339 5.05e-22 95.9
Msa0351520 MtrunA17_Chr0c01g0489581 25.000 352 233 11 12 347 3 339 5.68e-22 95.9
Msa0351520 MtrunA17_Chr0c01g0489571 25.000 352 233 11 12 347 3 339 1.04e-21 95.1
Msa0351520 MtrunA17_Chr2g0321991 45.872 109 53 4 17 120 12 119 1.84e-21 89.0
Msa0351520 MtrunA17_Chr2g0283481 25.352 355 229 14 15 346 28 369 7.05e-21 93.2
Msa0351520 MtrunA17_Chr7g0266061 26.235 324 187 12 39 341 44 336 1.40e-20 91.7
Msa0351520 MtrunA17_Chr1g0189921 41.803 122 64 4 18 134 11 130 1.59e-20 87.0
Msa0351520 MtrunA17_Chr3g0104821 25.225 333 215 12 39 347 46 368 1.67e-20 92.0
Msa0351520 MtrunA17_Chr1g0198381 25.309 324 205 12 39 349 4 303 2.84e-20 90.1
Msa0351520 MtrunA17_Chr4g0057991 24.000 325 219 9 39 345 41 355 4.63e-20 90.5
Msa0351520 MtrunA17_Chr7g0229581 32.593 135 90 1 212 345 8 142 1.01e-19 85.1
Msa0351520 MtrunA17_Chr8g0339251 28.065 310 188 10 13 306 1 291 1.13e-19 89.0
Msa0351520 MtrunA17_Chr1g0198351 26.708 322 186 12 39 341 45 335 1.97e-19 88.6
Msa0351520 MtrunA17_Chr2g0301581 24.722 360 229 12 7 347 5 341 2.15e-19 88.6
Msa0351520 MtrunA17_Chr8g0370971 49.000 100 44 2 36 128 37 136 1.24e-18 82.4
Msa0351520 MtrunA17_Chr1g0191461 22.527 364 249 8 9 348 4 358 2.05e-18 85.5
Msa0351520 MtrunA17_Chr2g0301541 24.444 360 230 12 7 347 5 341 3.02e-18 85.1
Msa0351520 MtrunA17_Chr2g0308201 49.398 83 41 1 8 90 7 88 4.22e-18 78.6
Msa0351520 MtrunA17_Chr2g0283531 27.628 333 206 13 39 347 33 354 4.96e-18 84.7
Msa0351520 MtrunA17_Chr3g0112821 24.390 328 216 13 39 347 32 346 1.33e-17 83.2
Msa0351520 MtrunA17_Chr2g0285051 67.241 58 19 0 34 91 33 90 2.67e-17 77.4
Msa0351520 MtrunA17_Chr2g0283501 23.295 352 232 12 16 342 12 350 8.59e-16 78.2
Msa0351520 MtrunA17_Chr7g0228261 36.264 91 57 1 279 369 3 92 9.14e-16 72.4
Msa0351520 MtrunA17_Chr3g0093031 23.494 332 219 13 39 347 32 351 1.84e-14 73.9
Msa0351520 MtrunA17_Chr4g0018561 60.000 55 21 1 32 85 25 79 1.15e-13 66.6
Msa0351520 MtrunA17_Chr1g0198391 23.599 339 195 12 39 341 35 345 1.15e-13 71.6
Msa0351520 MtrunA17_Chr4g0018571 30.435 138 95 1 212 348 31 168 4.34e-12 64.3
Msa0351520 MtrunA17_Chr3g0096551 22.222 342 223 11 39 347 31 362 9.38e-12 65.9
Msa0351520 MtrunA17_Chr2g0301591 24.161 298 198 10 7 295 5 283 3.05e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351520 AT1G29670.2 70.765 366 102 4 5 369 70 431 0.0 531
Msa0351520 AT1G29670.1 70.765 366 102 4 5 369 2 363 0.0 530
Msa0351520 AT5G45670.1 67.409 359 115 2 13 369 4 362 0.0 516
Msa0351520 AT1G29660.1 67.575 367 113 4 5 369 2 364 0.0 513
Msa0351520 AT4G18970.1 70.796 339 98 1 32 369 23 361 1.03e-179 503
Msa0351520 AT4G18970.2 70.588 340 99 1 31 369 22 361 2.90e-178 501
Msa0351520 AT1G33811.1 49.462 372 178 7 6 369 1 370 1.28e-123 361
Msa0351520 AT1G71691.2 50.442 339 164 4 31 369 49 383 1.53e-120 353
Msa0351520 AT5G08460.1 46.154 377 192 8 1 369 12 385 1.51e-113 336
Msa0351520 AT1G71250.1 45.652 368 194 5 5 369 9 373 2.11e-111 330
Msa0351520 AT5G15720.1 47.399 346 172 7 30 369 23 364 2.91e-108 322
Msa0351520 AT2G19010.2 40.164 366 197 7 7 368 30 377 2.10e-94 287
Msa0351520 AT2G19010.1 41.471 340 179 7 16 351 10 333 2.16e-94 286
Msa0351520 AT2G19050.1 42.398 342 171 7 34 369 28 349 9.04e-92 279
Msa0351520 AT1G71691.1 45.423 284 151 4 86 369 3 282 1.50e-89 271
Msa0351520 AT4G30140.1 45.970 335 161 8 34 366 30 346 1.06e-87 269
Msa0351520 AT2G19060.1 42.857 322 163 7 35 350 28 334 3.89e-87 267
Msa0351520 AT1G71691.3 49.248 266 132 3 31 296 49 311 6.13e-85 260
Msa0351520 AT5G15720.3 45.126 277 146 5 96 369 60 333 7.55e-82 253
Msa0351520 AT2G19050.2 47.600 250 122 3 34 282 28 269 1.24e-79 246
Msa0351520 AT5G15720.2 46.154 273 138 6 30 296 23 292 1.29e-75 236
Msa0351520 AT2G23540.1 37.249 349 211 4 8 348 19 367 4.88e-75 237
Msa0351520 AT5G37690.1 37.092 337 203 7 18 350 8 339 2.51e-74 234
Msa0351520 AT3G50400.1 39.450 327 187 7 39 355 36 361 6.21e-74 234
Msa0351520 AT4G10950.2 35.693 339 213 4 33 368 67 403 6.93e-72 230
Msa0351520 AT5G33370.1 37.685 337 200 7 38 369 31 362 9.71e-72 228
Msa0351520 AT4G28780.1 36.932 352 212 5 8 355 5 350 1.32e-70 225
Msa0351520 AT3G04290.1 40.938 320 178 7 33 345 23 338 1.49e-70 225
Msa0351520 AT5G37690.2 35.714 336 203 8 17 350 7 331 1.85e-69 222
Msa0351520 AT4G10950.1 35.608 337 212 4 33 368 67 399 2.46e-69 223
Msa0351520 AT1G74460.1 37.500 312 188 6 39 346 25 333 2.79e-69 222
Msa0351520 AT5G18430.1 36.286 350 215 5 13 355 1 349 2.20e-66 214
Msa0351520 AT5G55050.1 38.820 322 181 9 35 345 37 353 6.24e-64 208
Msa0351520 AT5G22810.1 35.380 342 211 7 13 346 8 347 3.17e-63 206
Msa0351520 AT3G53100.1 37.342 316 191 6 35 346 27 339 3.43e-62 203
Msa0351520 AT5G03820.1 35.965 342 210 7 11 346 7 345 4.17e-62 203
Msa0351520 AT5G41890.1 35.262 363 206 10 24 366 19 372 4.22e-62 204
Msa0351520 AT5G03820.2 35.965 342 210 7 11 346 35 373 8.41e-62 203
Msa0351520 AT2G04570.1 35.530 349 209 10 12 352 4 344 1.83e-61 201
Msa0351520 AT1G75880.1 33.333 348 213 8 12 345 20 362 4.57e-60 198
Msa0351520 AT1G75880.2 33.621 348 211 9 12 345 20 361 5.81e-60 198
Msa0351520 AT2G42990.1 36.420 324 189 9 31 345 22 337 5.90e-60 197
Msa0351520 AT5G03810.1 34.593 344 216 8 9 346 1 341 4.41e-59 195
Msa0351520 AT1G75890.2 35.802 324 192 10 36 350 46 362 5.19e-59 195
Msa0351520 AT1G75890.3 35.802 324 192 10 36 350 75 391 8.00e-59 196
Msa0351520 AT3G14820.1 33.038 339 214 8 15 348 10 340 3.89e-58 192
Msa0351520 AT5G42170.1 33.333 330 208 7 21 345 34 356 3.28e-57 191
Msa0351520 AT1G75890.1 34.524 336 193 10 36 350 46 375 9.68e-57 190
Msa0351520 AT4G26790.1 34.568 324 199 8 30 346 22 339 6.20e-56 187
Msa0351520 AT4G26790.2 34.568 324 199 8 30 346 22 339 6.20e-56 187
Msa0351520 AT1G75900.1 31.532 333 218 7 12 339 18 345 2.97e-55 186
Msa0351520 AT1G58430.1 32.362 343 219 9 13 346 9 347 1.50e-54 183
Msa0351520 AT2G30220.1 32.456 342 220 8 12 346 8 345 3.48e-54 182
Msa0351520 AT4G16230.1 40.336 238 136 4 17 250 10 245 5.69e-54 179
Msa0351520 AT2G31540.1 32.362 343 219 9 13 346 9 347 5.91e-54 182
Msa0351520 AT2G24560.1 32.622 328 210 8 26 346 23 346 1.05e-53 181
Msa0351520 AT5G33370.2 38.868 265 153 6 37 296 30 290 2.38e-53 179
Msa0351520 AT1G20135.1 31.515 330 208 8 14 339 5 320 1.70e-52 177
Msa0351520 AT2G30310.1 32.012 328 212 8 26 346 23 346 1.73e-52 178
Msa0351520 AT1G20132.1 35.048 311 189 7 36 339 60 364 2.09e-52 179
Msa0351520 AT3G16370.1 33.438 317 203 7 35 346 28 341 1.01e-51 176
Msa0351520 AT5G63170.1 33.231 325 198 8 19 339 10 319 1.57e-51 175
Msa0351520 AT1G59406.1 32.174 345 213 10 13 345 1 336 5.69e-51 174
Msa0351520 AT1G59030.1 32.174 345 213 10 13 345 1 336 5.69e-51 174
Msa0351520 AT1G58725.1 32.174 345 213 10 13 345 1 336 5.69e-51 174
Msa0351520 AT1G06990.1 33.123 317 200 8 36 345 36 347 7.96e-51 174
Msa0351520 AT2G03980.2 33.131 329 199 8 36 354 42 359 2.71e-50 172
Msa0351520 AT2G03980.3 33.131 329 199 8 36 354 42 359 2.71e-50 172
Msa0351520 AT2G03980.1 33.131 329 199 8 36 354 42 359 2.71e-50 172
Msa0351520 AT2G03980.4 33.131 329 199 8 36 354 42 359 2.71e-50 172
Msa0351520 AT1G20120.1 31.611 329 214 7 26 348 67 390 3.33e-49 171
Msa0351520 AT1G20130.2 31.915 329 200 8 35 347 182 502 1.62e-48 171
Msa0351520 AT1G23500.1 34.056 323 186 8 25 339 23 326 2.46e-48 167
Msa0351520 AT1G20130.1 32.219 329 199 8 35 347 202 522 4.56e-48 171
Msa0351520 AT1G73610.1 33.333 309 186 7 35 339 33 325 4.86e-48 166
Msa0351520 AT5G45950.1 31.627 332 214 9 28 355 31 353 6.05e-48 166
Msa0351520 AT2G40250.1 29.141 326 218 7 33 349 32 353 6.54e-47 164
Msa0351520 AT1G58520.3 33.228 316 192 9 35 345 28 329 1.48e-46 162
Msa0351520 AT1G58525.1 33.228 316 192 9 35 345 28 329 1.48e-46 162
Msa0351520 AT3G43570.1 30.409 342 193 11 12 345 3 307 5.50e-45 157
Msa0351520 AT1G53920.1 30.541 370 229 10 17 369 26 384 7.45e-45 159
Msa0351520 AT5G45960.1 29.412 323 215 8 26 339 36 354 4.69e-43 154
Msa0351520 AT1G75920.2 30.000 340 217 9 17 348 7 333 1.30e-42 152
Msa0351520 AT1G75930.1 29.275 345 217 10 11 347 7 332 1.35e-42 152
Msa0351520 AT1G71120.1 28.902 346 225 8 30 367 24 356 3.24e-42 151
Msa0351520 AT2G24560.2 32.616 279 177 8 26 297 23 297 2.80e-39 142
Msa0351520 AT1G75920.1 28.732 355 217 10 17 348 2 343 1.18e-38 141
Msa0351520 AT3G43550.1 32.069 290 180 9 15 296 6 286 2.71e-38 139
Msa0351520 AT1G75910.1 29.706 340 219 8 18 348 5 333 4.69e-37 137
Msa0351520 AT3G14225.2 28.779 344 223 9 39 369 39 373 5.91e-36 135
Msa0351520 AT3G14225.1 28.613 346 225 9 39 369 39 377 4.04e-35 132
Msa0351520 AT2G04020.1 35.897 234 131 6 21 243 21 246 5.03e-35 129
Msa0351520 AT1G53940.2 31.153 321 202 9 39 347 41 354 1.33e-34 131
Msa0351520 AT5G40990.1 30.247 324 201 10 39 347 39 352 2.97e-34 130
Msa0351520 AT1G75920.3 27.515 338 197 9 17 348 7 302 1.14e-33 127
Msa0351520 AT1G75920.4 28.618 304 198 8 51 348 15 305 2.64e-33 126
Msa0351520 AT2G04020.2 35.965 228 127 6 21 237 21 240 4.42e-33 126
Msa0351520 AT1G53990.1 28.308 325 209 8 39 352 37 348 5.62e-32 124
Msa0351520 AT2G31550.1 29.048 210 143 4 142 348 2 208 5.16e-29 112
Msa0351520 AT3G05180.1 27.566 341 204 11 36 346 35 362 3.33e-28 114
Msa0351520 AT1G54030.1 27.812 320 205 11 39 355 54 350 6.98e-28 113
Msa0351520 AT3G48460.1 27.245 323 201 11 39 339 40 350 6.36e-27 110
Msa0351520 AT4G16233.1 41.085 129 74 2 242 369 3 130 7.28e-27 103
Msa0351520 AT3G27950.1 24.731 372 244 9 13 360 6 365 9.45e-27 109
Msa0351520 AT1G53940.1 31.439 264 168 8 39 296 41 297 1.42e-26 108
Msa0351520 AT1G54790.3 25.069 363 235 10 13 348 8 360 1.65e-26 109
Msa0351520 AT1G54020.2 25.237 317 216 8 39 352 35 333 2.01e-26 108
Msa0351520 AT1G31550.2 26.415 371 227 12 1 342 1 354 2.38e-26 108
Msa0351520 AT3G62280.1 28.261 322 208 10 36 345 35 345 2.41e-26 108
Msa0351520 AT4G01130.1 25.278 360 232 11 13 345 11 360 8.49e-26 107
Msa0351520 AT1G28600.1 26.503 366 226 13 1 341 1 348 4.52e-25 105
Msa0351520 AT1G67830.1 27.326 344 205 11 34 345 27 357 8.91e-25 104
Msa0351520 AT1G54790.1 24.870 386 250 11 6 361 1 376 9.51e-25 104
Msa0351520 AT1G31550.1 25.676 370 228 12 1 342 1 351 1.69e-24 103
Msa0351520 AT1G28570.1 25.330 379 230 16 1 347 1 358 1.99e-24 103
Msa0351520 AT1G56670.1 24.798 371 246 11 11 363 14 369 2.39e-24 103
Msa0351520 AT1G28650.1 25.065 383 236 14 8 359 11 373 2.41e-24 103
Msa0351520 AT1G09390.1 25.199 377 253 12 1 361 1 364 3.32e-24 102
Msa0351520 AT5G14450.1 26.005 373 240 9 16 361 19 382 5.10e-24 102
Msa0351520 AT2G27360.1 27.077 325 204 13 41 341 37 352 1.39e-23 101
Msa0351520 AT1G28640.1 24.611 386 246 15 2 359 3 371 1.63e-23 100
Msa0351520 AT1G28610.2 25.613 367 228 13 1 341 1 348 2.41e-23 100
Msa0351520 AT1G28660.1 25.479 365 221 14 8 341 9 353 1.11e-22 98.6
Msa0351520 AT1G54010.1 23.200 375 258 12 1 366 1 354 1.18e-22 98.6
Msa0351520 AT5G03610.1 28.182 330 202 14 39 356 45 351 2.08e-22 97.4
Msa0351520 AT5G03600.2 26.254 339 204 12 19 341 30 338 4.10e-22 96.7
Msa0351520 AT5G03600.1 26.006 323 194 11 34 341 11 303 5.69e-22 95.5
Msa0351520 AT1G54000.1 21.774 372 251 11 12 362 8 360 6.03e-22 96.7
Msa0351520 AT1G28660.2 25.205 365 221 15 8 341 9 352 8.20e-22 95.9
Msa0351520 AT3G14220.1 27.794 349 229 12 24 366 19 350 1.80e-21 94.7
Msa0351520 AT3G09930.2 27.103 321 192 14 39 341 41 337 1.83e-21 94.7
Msa0351520 AT3G09930.1 27.103 321 192 14 39 341 41 337 1.83e-21 94.7
Msa0351520 AT1G28580.1 24.629 337 218 11 41 352 41 366 2.82e-21 94.7
Msa0351520 AT3G26430.1 26.765 340 208 11 36 345 30 358 3.55e-21 94.4
Msa0351520 AT1G28590.1 25.826 333 209 12 41 347 40 360 4.77e-21 94.0
Msa0351520 AT1G54790.2 23.544 412 249 12 6 361 1 402 6.49e-21 93.6
Msa0351520 AT4G16220.1 53.261 92 40 2 31 120 24 114 2.76e-20 89.4
Msa0351520 AT1G28670.1 23.876 356 239 13 8 341 9 354 2.94e-20 91.7
Msa0351520 AT3G62280.2 28.516 256 165 7 36 284 35 279 6.74e-20 89.4
Msa0351520 AT4G01130.2 25.413 303 202 9 13 301 11 303 3.61e-19 87.8
Msa0351520 AT3G14210.1 25.455 330 212 11 39 355 38 346 1.05e-18 87.0
Msa0351520 AT5G45910.1 27.624 362 220 16 13 341 1 353 2.46e-17 82.8
Msa0351520 AT1G54030.2 29.237 236 143 9 39 271 54 268 3.04e-17 82.0
Msa0351520 AT1G56670.2 25.084 299 196 9 11 296 14 297 5.66e-16 78.2
Msa0351520 AT4G01130.3 23.827 277 179 8 96 345 3 274 5.92e-16 78.2
Msa0351520 AT1G54020.1 22.177 248 175 5 107 352 16 247 1.39e-15 76.6
Msa0351520 AT1G54020.5 22.177 248 175 5 107 352 16 247 1.39e-15 76.6
Msa0351520 AT1G54020.3 22.177 248 175 5 107 352 16 247 1.39e-15 76.6
Msa0351520 AT1G54020.4 24.227 194 142 3 161 352 8 198 7.66e-15 73.9
Msa0351520 AT2G36325.1 23.810 315 207 11 39 341 49 342 7.09e-14 72.4
Msa0351520 AT1G28610.1 30.488 164 100 6 41 194 35 194 1.61e-12 67.4

Find 105 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTAATTGTGGTATTTA+AGG 0.072634 3_1:+18388109 Msa0351520:three_prime_UTR
CCTTCTAATTTAATTAAATT+TGG 0.121221 3_1:-18388463 None:intergenic
TCAATCCGTTGTTAAATAAT+TGG 0.173174 3_1:-18386346 None:intergenic
TGAAGTGGATTATGAATTTA+TGG 0.185723 3_1:+18382686 Msa0351520:CDS
CCTTATGGGATTGACTTTAA+TGG 0.214241 3_1:+18382850 Msa0351520:CDS
GCAAGGAAAATGGCTTTATT+TGG 0.218661 3_1:+18386236 Msa0351520:CDS
AAAGCTAATTATCTTCCTTA+TGG 0.223489 3_1:+18382835 Msa0351520:CDS
ATTTCTTGCTTCAATTAATA+TGG 0.223500 3_1:+18382642 Msa0351520:exon
ATAGGAATGAGTATCTATTT+TGG 0.228224 3_1:+18387966 Msa0351520:CDS
TAGCTTTGGCCAAAGAATTT+AGG 0.235549 3_1:-18382819 None:intergenic
TTGGTCTCTGGCTGTTGAAT+AGG 0.237689 3_1:-18384321 None:intergenic
ATGGGTAATGGTAGTGGTTA+TGG 0.243218 3_1:+18382705 Msa0351520:CDS
CTATATAATTGTCACATTTC+AGG 0.249961 3_1:+18382544 None:intergenic
CAATAACAACCTAAATTCTT+TGG 0.263389 3_1:+18382810 Msa0351520:CDS
TGACTCCTTTGAGTATTTCT+TGG 0.264181 3_1:-18384340 None:intergenic
TGTAAGTGAATGAGTGGATA+TGG 0.280252 3_1:-18382573 None:intergenic
AAATTTGACAGCTGAGCTTT+TGG 0.281884 3_1:+18384277 Msa0351520:intron
TTATTTGGCATTGGTCAAAT+AGG 0.305384 3_1:+18386251 Msa0351520:CDS
CCAAATTTAATTAAATTAGA+AGG 0.310157 3_1:+18388463 Msa0351520:three_prime_UTR
TGGGTAATGGTAGTGGTTAT+GGG 0.316729 3_1:+18382706 Msa0351520:CDS
TGTTGATGGTATAAATATAA+TGG 0.324700 3_1:+18388414 Msa0351520:three_prime_UTR
CTTCAATTAATATGGCATCT+AGG 0.328844 3_1:+18382650 Msa0351520:exon
CCACTTGGGACACTGTCTTT+TGG 0.333033 3_1:-18384944 None:intergenic
AAGCTAATTATCTTCCTTAT+GGG 0.333610 3_1:+18382836 Msa0351520:CDS
TTCATCTATGTAAATACTTA+TGG 0.337976 3_1:+18386413 Msa0351520:CDS
GACTTTAATGGTGGTCCAAC+TGG 0.345704 3_1:+18382862 Msa0351520:CDS
TAACTATGGAGCAAGGAAAA+TGG 0.350614 3_1:+18386226 Msa0351520:CDS
TGGTCTCTGGCTGTTGAATA+GGG 0.352173 3_1:-18384320 None:intergenic
TTTGAGTATTTCTTGGTCTC+TGG 0.354674 3_1:-18384333 None:intergenic
ATAAATATAATGGTACTTAT+TGG 0.356741 3_1:+18388424 Msa0351520:three_prime_UTR
AATGAAGGGTGTTGTGGAAT+AGG 0.363284 3_1:+18387893 Msa0351520:CDS
TTCAAACCCCATGTAGTAAT+AGG 0.364637 3_1:+18387948 Msa0351520:CDS
AGCAAATGCATCTATTCAAT+TGG 0.370270 3_1:+18385008 Msa0351520:CDS
ATGCATCTATTCAATTGGAT+TGG 0.382517 3_1:+18385013 Msa0351520:CDS
GAGGTTGGCAACACTATAAT+TGG 0.383615 3_1:+18388007 Msa0351520:CDS
TATTACTACATGGGGTTTGA+AGG 0.386243 3_1:-18387946 None:intergenic
TAGCTTTCCTTCTTTGGATG+TGG 0.389102 3_1:-18388283 None:intergenic
TGGTAGTGGTTATGGGTTTG+TGG 0.410284 3_1:+18382713 Msa0351520:CDS
TATGGGTTTGTGGAGTAGTA+AGG 0.423823 3_1:+18382723 Msa0351520:CDS
TTCAATTAATATGGCATCTA+GGG 0.424500 3_1:+18382651 Msa0351520:exon
GGTGACTCTTTGGTGGATGA+TGG 0.428986 3_1:+18382784 Msa0351520:CDS
ATAAACAACCCATCATCATT+TGG 0.432626 3_1:+18386452 Msa0351520:CDS
AATTATGCTTCTGCTGCTGC+TGG 0.433063 3_1:+18384362 Msa0351520:CDS
TGCATCTATTCAATTGGATT+GGG 0.434633 3_1:+18385014 Msa0351520:CDS
CTCCAAGCAAATTTACCACT+TGG 0.441191 3_1:-18384959 None:intergenic
AAATAATTACCAAATGATGA+TGG 0.442563 3_1:-18386461 None:intergenic
GCTGGAATCAGAGAAGAAAC+TGG 0.443343 3_1:+18384380 Msa0351520:CDS
GAATTTATGGGTAATGGTAG+TGG 0.444209 3_1:+18382699 Msa0351520:CDS
CAGGCATGAAATAGTTGTTA+AGG 0.445948 3_1:-18385049 None:intergenic
GGTATAAGAGTTACAAATGA+AGG 0.446045 3_1:+18387878 Msa0351520:intron
TCCCAAGTGGTAAATTTGCT+TGG 0.450344 3_1:+18384957 Msa0351520:CDS
GATTATGAATTTATGGGTAA+TGG 0.459136 3_1:+18382693 Msa0351520:CDS
AAAATGGCTTTATTTGGCAT+TGG 0.460933 3_1:+18386242 Msa0351520:CDS
ACATAGATGAATCTTGCATC+AGG 0.464951 3_1:-18386401 None:intergenic
ATAAGGAAGATAATTAGCTT+TGG 0.475522 3_1:-18382833 None:intergenic
GGTAAATTTGCTTGGAGATG+AGG 0.485330 3_1:+18384965 Msa0351520:CDS
TTTCATGAAACTACACTTGG+TGG 0.489914 3_1:-18388310 None:intergenic
GAAGTGGATTATGAATTTAT+GGG 0.490510 3_1:+18382687 Msa0351520:CDS
GTGACTCTTTGGTGGATGAT+GGG 0.492465 3_1:+18382785 Msa0351520:CDS
GCTAAGCGATTGATGTCAAT+AGG 0.494611 3_1:-18388070 None:intergenic
AAAACTACTGTTGATGTCAT+TGG 0.504507 3_1:+18382901 Msa0351520:CDS
ATTACTACATGGGGTTTGAA+GGG 0.507716 3_1:-18387945 None:intergenic
TACTCATTCCTATTACTACA+TGG 0.509268 3_1:-18387956 None:intergenic
AAGCATATGCTCAACAACTC+AGG 0.510698 3_1:+18385126 Msa0351520:CDS
ATAGTGTTGCCAACCTCAGT+TGG 0.526000 3_1:-18388001 None:intergenic
CTCATTCCTATTACTACATG+GGG 0.527908 3_1:-18387954 None:intergenic
AATATAATGGTACTTATTGG+TGG 0.529762 3_1:+18388427 Msa0351520:three_prime_UTR
GCATTTCACCCAACTGAGGT+TGG 0.531730 3_1:+18387992 Msa0351520:CDS
TAGTGTTGCCAACCTCAGTT+GGG 0.532458 3_1:-18388000 None:intergenic
TATGGGATTGACTTTAATGG+TGG 0.533249 3_1:+18382853 Msa0351520:CDS
TCAACACAAGTGGTACCATC+TGG 0.537783 3_1:-18386305 None:intergenic
GTTACAAATGAAGGGTGTTG+TGG 0.538522 3_1:+18387887 Msa0351520:CDS
AATAATTACCAAATGATGAT+GGG 0.538591 3_1:-18386460 None:intergenic
ATTGATTCTTTCAACACAAG+TGG 0.538886 3_1:-18386315 None:intergenic
TGTCTACCACTAGGATATGC+AGG 0.541118 3_1:-18385068 None:intergenic
CCATTAAAGTCAATCCCATA+AGG 0.541311 3_1:-18382850 None:intergenic
CCATTGGAGAACCTTCCAGT+TGG 0.542612 3_1:-18382877 None:intergenic
AATGTAAGTATTATAAAATG+TGG 0.545575 3_1:-18382604 None:intergenic
ATGAAGTAGCAAGGTACTTG+AGG 0.547628 3_1:-18382757 None:intergenic
TTTGGATCCACATCCAAAGA+AGG 0.554456 3_1:+18388276 Msa0351520:three_prime_UTR
TCCAAGCAAATTTACCACTT+GGG 0.565440 3_1:-18384958 None:intergenic
GCAAACCAATTATTTAACAA+CGG 0.569107 3_1:+18386341 Msa0351520:CDS
GTAAGTGAATGAGTGGATAT+GGG 0.571441 3_1:-18382572 None:intergenic
ACTCATTCCTATTACTACAT+GGG 0.573415 3_1:-18387955 None:intergenic
ATGAAGCAATCGTGTCATTG+TGG 0.584342 3_1:+18388339 Msa0351520:three_prime_UTR
TTACTACATGGGGTTTGAAG+GGG 0.591767 3_1:-18387944 None:intergenic
TGTGTGTGTAAGTGAATGAG+TGG 0.593617 3_1:-18382579 None:intergenic
TTAATGGTGGTCCAACTGGA+AGG 0.597104 3_1:+18382866 Msa0351520:CDS
TTATGCCAAAGGTGTACAAG+AGG 0.597955 3_1:+18388203 Msa0351520:three_prime_UTR
AGCATATGCTCAACAACTCA+GGG 0.599906 3_1:+18385127 Msa0351520:CDS
TGATGATGAAACTGTAATTG+TGG 0.602948 3_1:+18388100 Msa0351520:exon
TTAGCTCAAAACAGTCCAGA+TGG 0.606226 3_1:+18386290 Msa0351520:CDS
CCAACTGGAAGGTTCTCCAA+TGG 0.606700 3_1:+18382877 Msa0351520:CDS
GGGAAGTCAATATTGTGAAG+TGG 0.607636 3_1:+18382671 Msa0351520:CDS
TTGGCAACACTATAATTGGT+AGG 0.611699 3_1:+18388011 Msa0351520:CDS
GTATAAGAGTTACAAATGAA+GGG 0.615314 3_1:+18387879 Msa0351520:CDS
AGAACATCAGCATACTGTTG+TGG 0.626235 3_1:-18385098 None:intergenic
AGAGACCAAGAAATACTCAA+AGG 0.628299 3_1:+18384335 Msa0351520:CDS
ATGAATAAATAAGATGTCCG+AGG 0.639210 3_1:+18388547 Msa0351520:three_prime_UTR
GGATGCATTTCACCCAACTG+AGG 0.647186 3_1:+18387988 Msa0351520:CDS
GGTGTAAACTGTCTACCACT+AGG 0.647660 3_1:-18385077 None:intergenic
TTCATGCCTGCATATCCTAG+TGG 0.673085 3_1:+18385062 Msa0351520:CDS
TGTGGAATAGGAAGAAACAA+TGG 0.683683 3_1:+18387905 Msa0351520:CDS
AAAGGTTGAGAATCAAACCT+CGG 0.687724 3_1:-18388564 None:intergenic
CCAAAAGACAGTGTCCCAAG+TGG 0.688869 3_1:+18384944 Msa0351520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTAAAATTATA+AGG - chr3_1:18387646-18387665 None:intergenic 0.0%
!! TAAAAATTAACATTTCAAAT+TGG - chr3_1:18382968-18382987 None:intergenic 10.0%
!! TTTAATAATCAAAATGATTT+AGG - chr3_1:18383283-18383302 None:intergenic 10.0%
!!! TTTTTTTCCAAAATTAAAAT+AGG - chr3_1:18385899-18385918 None:intergenic 10.0%
!! AATGTAAGTATTATAAAATG+TGG - chr3_1:18382607-18382626 None:intergenic 15.0%
!! ATAATTTGATTAAAAAAGAG+AGG + chr3_1:18383037-18383056 Msa0351520:intron 15.0%
!!! TCAAGATTAATCAATTTTAA+AGG - chr3_1:18383104-18383123 None:intergenic 15.0%
!! AAATATGATTGATAAATGAT+AGG - chr3_1:18383449-18383468 None:intergenic 15.0%
!!! TATAAATTACTTTTAGTCTT+TGG - chr3_1:18383489-18383508 None:intergenic 15.0%
!! AAATGATAACAAATAATCTA+GGG - chr3_1:18383737-18383756 None:intergenic 15.0%
!! AAAATGATAACAAATAATCT+AGG - chr3_1:18383738-18383757 None:intergenic 15.0%
!!! TAGTTCTTAATTTATTTTTG+AGG + chr3_1:18383911-18383930 Msa0351520:intron 15.0%
!!! AGTTCTTAATTTATTTTTGA+GGG + chr3_1:18383912-18383931 Msa0351520:intron 15.0%
!!! TTTTACTTTTTCACTTTAAA+TGG + chr3_1:18384155-18384174 Msa0351520:intron 15.0%
!! GACAAAAACAAAAAATTATA+AGG + chr3_1:18384806-18384825 Msa0351520:intron 15.0%
!! ACAAAGATAAAAAGAAATTA+AGG - chr3_1:18384855-18384874 None:intergenic 15.0%
!! TATTAATATTATACTCCATT+CGG - chr3_1:18385646-18385665 None:intergenic 15.0%
!! AAATTCAAACCTATTAAATA+AGG + chr3_1:18385739-18385758 Msa0351520:intron 15.0%
!! AAAAATTTAAATCTTAAGTC+TGG - chr3_1:18385821-18385840 None:intergenic 15.0%
!!! TAAGATTTAAATTTTTAGAC+AGG + chr3_1:18385825-18385844 Msa0351520:intron 15.0%
!! TTTACAAAAGCAAAAAATAA+AGG - chr3_1:18386090-18386109 None:intergenic 15.0%
!!! AATTAGATTTTGTATAACTA+TGG + chr3_1:18386212-18386231 Msa0351520:intron 15.0%
!! TTATAACTAGAAAATGTTTA+AGG - chr3_1:18386490-18386509 None:intergenic 15.0%
!! TTAATATAAATTACTTCGTT+TGG + chr3_1:18386586-18386605 Msa0351520:intron 15.0%
!! AATAACTATAACAAATGAAA+TGG - chr3_1:18387713-18387732 None:intergenic 15.0%
!! ATAAATATAATGGTACTTAT+TGG + chr3_1:18388424-18388443 Msa0351520:three_prime_UTR 15.0%
!! CCTTCTAATTTAATTAAATT+TGG - chr3_1:18388466-18388485 None:intergenic 15.0%
!! CCAAATTTAATTAAATTAGA+AGG + chr3_1:18388463-18388482 Msa0351520:three_prime_UTR 15.0%
!! ATTTCTTGCTTCAATTAATA+TGG + chr3_1:18382642-18382661 Msa0351520:exon 20.0%
!! AAAAAGAGAGGTTTATAAAA+AGG + chr3_1:18383049-18383068 Msa0351520:intron 20.0%
!!! TATTTACAGTATGCTTTAAA+AGG + chr3_1:18383136-18383155 Msa0351520:intron 20.0%
!! TTATTAATAAGAGACACAAA+TGG + chr3_1:18383368-18383387 Msa0351520:intron 20.0%
!! TTCTTTAATTAAAGAGCTAA+GGG + chr3_1:18383976-18383995 Msa0351520:intron 20.0%
!! TGTCATATTGACAATTATAA+GGG - chr3_1:18384782-18384801 None:intergenic 20.0%
!! ATGTCATATTGACAATTATA+AGG - chr3_1:18384783-18384802 None:intergenic 20.0%
!! TTATAATTGTCAATATGACA+TGG + chr3_1:18384782-18384801 Msa0351520:intron 20.0%
!! TCTAACATACACAAATAAAA+TGG + chr3_1:18385312-18385331 Msa0351520:intron 20.0%
!! TTATAAACTAGAACTCAAAT+AGG + chr3_1:18385407-18385426 Msa0351520:intron 20.0%
!! ATACTACAATTTAGAGAATT+TGG - chr3_1:18385446-18385465 None:intergenic 20.0%
!!! AATTTGTTTATAAATGTAGC+TGG - chr3_1:18385538-18385557 None:intergenic 20.0%
!!! TAGAAGTTTAATTGTTTTGT+TGG + chr3_1:18386153-18386172 Msa0351520:intron 20.0%
!!! AGAAGTTTAATTGTTTTGTT+GGG + chr3_1:18386154-18386173 Msa0351520:intron 20.0%
!! TTCATCTATGTAAATACTTA+TGG + chr3_1:18386413-18386432 Msa0351520:CDS 20.0%
!! AATAATTACCAAATGATGAT+GGG - chr3_1:18386463-18386482 None:intergenic 20.0%
!! AAATAATTACCAAATGATGA+TGG - chr3_1:18386464-18386483 None:intergenic 20.0%
!!! TTTGAGAATTTTCAAAAAGT+AGG + chr3_1:18386617-18386636 Msa0351520:intron 20.0%
!! AAATTAGAATATGTTGTACT+TGG + chr3_1:18387143-18387162 Msa0351520:intron 20.0%
!! ACATGTATGTATAATAACAT+GGG - chr3_1:18387227-18387246 None:intergenic 20.0%
!!! TTCCTTCTTTACTTTTTTTT+TGG + chr3_1:18387325-18387344 Msa0351520:intron 20.0%
!! CCAAATTAGAAAAGTTAATA+GGG - chr3_1:18387614-18387633 None:intergenic 20.0%
!!! TGAAACTTTTGAAAAGTTTA+GGG - chr3_1:18387682-18387701 None:intergenic 20.0%
!!! TTGAAACTTTTGAAAAGTTT+AGG - chr3_1:18387683-18387702 None:intergenic 20.0%
!!! GTTGAAACATTTTTTTTTGT+TGG + chr3_1:18388137-18388156 Msa0351520:three_prime_UTR 20.0%
!!! GTGTACAAGATTTTAATATA+GGG + chr3_1:18388253-18388272 Msa0351520:three_prime_UTR 20.0%
!!! TGTTGATGGTATAAATATAA+TGG + chr3_1:18388414-18388433 Msa0351520:three_prime_UTR 20.0%
! TTCAATTAATATGGCATCTA+GGG + chr3_1:18382651-18382670 Msa0351520:exon 25.0%
!!! TGAAGTGGATTATGAATTTA+TGG + chr3_1:18382686-18382705 Msa0351520:CDS 25.0%
!!! GAAGTGGATTATGAATTTAT+GGG + chr3_1:18382687-18382706 Msa0351520:CDS 25.0%
! GATTATGAATTTATGGGTAA+TGG + chr3_1:18382693-18382712 Msa0351520:CDS 25.0%
! CAATAACAACCTAAATTCTT+TGG + chr3_1:18382810-18382829 Msa0351520:CDS 25.0%
!! ATAAGGAAGATAATTAGCTT+TGG - chr3_1:18382836-18382855 None:intergenic 25.0%
! AAAGCTAATTATCTTCCTTA+TGG + chr3_1:18382835-18382854 Msa0351520:CDS 25.0%
! AAGCTAATTATCTTCCTTAT+GGG + chr3_1:18382836-18382855 Msa0351520:CDS 25.0%
!! AGTTTGCTTATAAGTCAAAT+TGG + chr3_1:18382926-18382945 Msa0351520:intron 25.0%
!! CAAATGCATATTTTCTTAGT+CGG + chr3_1:18383331-18383350 Msa0351520:intron 25.0%
! AACTGATAAAAAGACTACAA+TGG - chr3_1:18383543-18383562 None:intergenic 25.0%
!! GTATCTTAAGGACATTTTTA+AGG + chr3_1:18383604-18383623 Msa0351520:intron 25.0%
! GTTCTTTAATTAAAGAGCTA+AGG + chr3_1:18383975-18383994 Msa0351520:intron 25.0%
! CATAATTAGAGTCAATCTTA+TGG - chr3_1:18384223-18384242 None:intergenic 25.0%
! TTTCTCTATGCTAAATTTAG+TGG + chr3_1:18384425-18384444 Msa0351520:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr3_1:18384655-18384674 None:intergenic 25.0%
! ACCATTTATTTCAACTTTGT+AGG + chr3_1:18384884-18384903 Msa0351520:intron 25.0%
! CCATTTATTTCAACTTTGTA+GGG + chr3_1:18384885-18384904 Msa0351520:intron 25.0%
! CAATGAGATTAAACTTCATT+TGG - chr3_1:18385476-18385495 None:intergenic 25.0%
!! TAAACAAATTTTGCTCTATC+AGG + chr3_1:18385548-18385567 Msa0351520:intron 25.0%
!!! TAAGACAATTTTGTTGTATC+AGG - chr3_1:18385614-18385633 None:intergenic 25.0%
! ATTAAAATAGGAGTGGAAAT+AGG - chr3_1:18385887-18385906 None:intergenic 25.0%
!!! TTCCACTCCTATTTTAATTT+TGG + chr3_1:18385889-18385908 Msa0351520:intron 25.0%
! TTCCAAAATTAAAATAGGAG+TGG - chr3_1:18385894-18385913 None:intergenic 25.0%
!! AGTTATGAGTATTTTTCGTA+AGG - chr3_1:18385960-18385979 None:intergenic 25.0%
!! AACTAACTTTGAGAAATTTG+TGG - chr3_1:18386001-18386020 None:intergenic 25.0%
! GCAAACCAATTATTTAACAA+CGG + chr3_1:18386341-18386360 Msa0351520:CDS 25.0%
! TCAATCCGTTGTTAAATAAT+TGG - chr3_1:18386349-18386368 None:intergenic 25.0%
! ATAGTGTGTTTGTTTGTATA+AGG + chr3_1:18386538-18386557 Msa0351520:intron 25.0%
!! GTTTGTATAAGGAAGTTTTA+CGG + chr3_1:18386549-18386568 Msa0351520:intron 25.0%
!! TTTGTATAAGGAAGTTTTAC+GGG + chr3_1:18386550-18386569 Msa0351520:intron 25.0%
! AAAGTGGACAATACTTTAAA+AGG - chr3_1:18386725-18386744 None:intergenic 25.0%
!! ACCTTGATTCAATTGATTTA+GGG + chr3_1:18387197-18387216 Msa0351520:intron 25.0%
! CACATGTATGTATAATAACA+TGG - chr3_1:18387228-18387247 None:intergenic 25.0%
! CACCAAAAAAAAAGTAAAGA+AGG - chr3_1:18387330-18387349 None:intergenic 25.0%
! GATAAAGAATTGTTTCATTC+AGG + chr3_1:18387421-18387440 Msa0351520:intron 25.0%
! TAGTTAATGAGTTTCACAAA+AGG - chr3_1:18387478-18387497 None:intergenic 25.0%
!! CCCTATTAACTTTTCTAATT+TGG + chr3_1:18387611-18387630 Msa0351520:intron 25.0%
! GCCAAATTAGAAAAGTTAAT+AGG - chr3_1:18387615-18387634 None:intergenic 25.0%
!!! TTGTTTCTGTCTTAATTTTC+AGG + chr3_1:18387857-18387876 Msa0351520:intron 25.0%
! GTATAAGAGTTACAAATGAA+GGG + chr3_1:18387879-18387898 Msa0351520:CDS 25.0%
!! ATAGGAATGAGTATCTATTT+TGG + chr3_1:18387966-18387985 Msa0351520:CDS 25.0%
!! TAGGAATGAGTATCTATTTT+GGG + chr3_1:18387967-18387986 Msa0351520:CDS 25.0%
! AACTGTAATTGTGGTATTTA+AGG + chr3_1:18388109-18388128 Msa0351520:three_prime_UTR 25.0%
!!! AAGAGGTTTTTGTTTTGTTT+GGG + chr3_1:18388220-18388239 Msa0351520:three_prime_UTR 25.0%
!!! GGTGTACAAGATTTTAATAT+AGG + chr3_1:18388252-18388271 Msa0351520:three_prime_UTR 25.0%
!!! CAAGATTTTAATATAGGGTT+TGG + chr3_1:18388258-18388277 Msa0351520:three_prime_UTR 25.0%
!!! TTTTTTCATGAAACTACACT+TGG - chr3_1:18388316-18388335 None:intergenic 25.0%
!! TGTTATGATTTTCTTGTTGA+TGG + chr3_1:18388400-18388419 Msa0351520:three_prime_UTR 25.0%
! AATATAATGGTACTTATTGG+TGG + chr3_1:18388427-18388446 Msa0351520:three_prime_UTR 25.0%
CTTCAATTAATATGGCATCT+AGG + chr3_1:18382650-18382669 Msa0351520:exon 30.0%
! ATCAACAGTAGTTTTTCCAT+TGG - chr3_1:18382896-18382915 None:intergenic 30.0%
AAAACTACTGTTGATGTCAT+TGG + chr3_1:18382901-18382920 Msa0351520:CDS 30.0%
! TTCCTTTTTCCTCAAAAAGA+CGG + chr3_1:18383074-18383093 Msa0351520:intron 30.0%
TCTTGCTAACAAGTATCTTA+AGG + chr3_1:18383592-18383611 Msa0351520:intron 30.0%
ATAGAGTGAAATGTATAAGC+CGG + chr3_1:18383768-18383787 Msa0351520:intron 30.0%
! ACTAATGCTTTATTGTTCAC+CGG - chr3_1:18383790-18383809 None:intergenic 30.0%
AATTCCATGTGCTTGAAATT+GGG - chr3_1:18383878-18383897 None:intergenic 30.0%
CGTAATTTATGATAGTCATC+TGG + chr3_1:18383944-18383963 Msa0351520:intron 30.0%
! TTTTTACCCAAGATTTGTGA+TGG - chr3_1:18384040-18384059 None:intergenic 30.0%
CTATGAAGCACGAATATATA+CGG - chr3_1:18384727-18384746 None:intergenic 30.0%
CCCTACAAAGTTGAAATAAA+TGG - chr3_1:18384888-18384907 None:intergenic 30.0%
AGCAAATGCATCTATTCAAT+TGG + chr3_1:18385008-18385027 Msa0351520:CDS 30.0%
ATGCATCTATTCAATTGGAT+TGG + chr3_1:18385013-18385032 Msa0351520:CDS 30.0%
TGCATCTATTCAATTGGATT+GGG + chr3_1:18385014-18385033 Msa0351520:CDS 30.0%
!! GATGTGACTTTTTGATTCAA+TGG - chr3_1:18385276-18385295 None:intergenic 30.0%
TGTTTATAAATGTAGCTGGA+GGG - chr3_1:18385534-18385553 None:intergenic 30.0%
TTGTTTATAAATGTAGCTGG+AGG - chr3_1:18385535-18385554 None:intergenic 30.0%
GTCTTATAAATGTAACCGAA+TGG + chr3_1:18385628-18385647 Msa0351520:intron 30.0%
TTGTGGATTTGAGAAATCAT+TGG - chr3_1:18385984-18386003 None:intergenic 30.0%
! TTTTGTATAACTATGGAGCA+AGG + chr3_1:18386219-18386238 Msa0351520:CDS 30.0%
!! AAAATGGCTTTATTTGGCAT+TGG + chr3_1:18386242-18386261 Msa0351520:CDS 30.0%
!! TTATTTGGCATTGGTCAAAT+AGG + chr3_1:18386251-18386270 Msa0351520:CDS 30.0%
!! CTGTTTTGAGCTAATTCATT+TGG - chr3_1:18386284-18386303 None:intergenic 30.0%
! ATTGATTCTTTCAACACAAG+TGG - chr3_1:18386318-18386337 None:intergenic 30.0%
ATAAACAACCCATCATCATT+TGG + chr3_1:18386452-18386471 Msa0351520:CDS 30.0%
! TTGTATAAGGAAGTTTTACG+GGG + chr3_1:18386551-18386570 Msa0351520:intron 30.0%
GGAACATAACAACATTTAGA+TGG - chr3_1:18386681-18386700 None:intergenic 30.0%
TGTAAATGACAAAACTGTGA+GGG - chr3_1:18386765-18386784 None:intergenic 30.0%
TTGTAAATGACAAAACTGTG+AGG - chr3_1:18386766-18386785 None:intergenic 30.0%
! AGACTAAAGGGAGATTTTAT+AGG + chr3_1:18386898-18386917 Msa0351520:intron 30.0%
GACTTGAGATATTTGGTATA+TGG + chr3_1:18386957-18386976 Msa0351520:intron 30.0%
! GACCTTGATTCAATTGATTT+AGG + chr3_1:18387196-18387215 Msa0351520:intron 30.0%
ACCCTAAATCAATTGAATCA+AGG - chr3_1:18387201-18387220 None:intergenic 30.0%
!!! TTTTTTTGGTGTTAACCCTT+CGG + chr3_1:18387339-18387358 Msa0351520:intron 30.0%
CACAAAAGGACAAACTATTT+GGG - chr3_1:18387464-18387483 None:intergenic 30.0%
TCACAAAAGGACAAACTATT+TGG - chr3_1:18387465-18387484 None:intergenic 30.0%
TGTGTGATTCATCAAATCTA+CGG - chr3_1:18387586-18387605 None:intergenic 30.0%
GGTATAAGAGTTACAAATGA+AGG + chr3_1:18387878-18387897 Msa0351520:intron 30.0%
ACTCATTCCTATTACTACAT+GGG - chr3_1:18387958-18387977 None:intergenic 30.0%
TACTCATTCCTATTACTACA+TGG - chr3_1:18387959-18387978 None:intergenic 30.0%
! TGATGATGAAACTGTAATTG+TGG + chr3_1:18388100-18388119 Msa0351520:exon 30.0%
! GTGATGAATTTTTATGCCAA+AGG + chr3_1:18388192-18388211 Msa0351520:three_prime_UTR 30.0%
!!! CAAGAGGTTTTTGTTTTGTT+TGG + chr3_1:18388219-18388238 Msa0351520:three_prime_UTR 30.0%
ATGAATAAATAAGATGTCCG+AGG + chr3_1:18388547-18388566 Msa0351520:three_prime_UTR 30.0%
GTAAGTGAATGAGTGGATAT+GGG - chr3_1:18382575-18382594 None:intergenic 35.0%
TGTAAGTGAATGAGTGGATA+TGG - chr3_1:18382576-18382595 None:intergenic 35.0%
! GAATTTATGGGTAATGGTAG+TGG + chr3_1:18382699-18382718 Msa0351520:CDS 35.0%
!! GTACCTTGCTACTTCATTTT+TGG + chr3_1:18382763-18382782 Msa0351520:CDS 35.0%
TCACCAAAAATGAAGTAGCA+AGG - chr3_1:18382769-18382788 None:intergenic 35.0%
!!! CTTCATTTTTGGTGACTCTT+TGG + chr3_1:18382774-18382793 Msa0351520:CDS 35.0%
!! TAGCTTTGGCCAAAGAATTT+AGG - chr3_1:18382822-18382841 None:intergenic 35.0%
CCATTAAAGTCAATCCCATA+AGG - chr3_1:18382853-18382872 None:intergenic 35.0%
! CCTTATGGGATTGACTTTAA+TGG + chr3_1:18382850-18382869 Msa0351520:CDS 35.0%
! TATGGGATTGACTTTAATGG+TGG + chr3_1:18382853-18382872 Msa0351520:CDS 35.0%
! TTCTCCTTCTAAAAGTAGAC+TGG + chr3_1:18383411-18383430 Msa0351520:intron 35.0%
!! CATACCAGTCTACTTTTAGA+AGG - chr3_1:18383418-18383437 None:intergenic 35.0%
ATTCCATGTGCTTGAAATTG+GGG - chr3_1:18383877-18383896 None:intergenic 35.0%
CAATTCCATGTGCTTGAAAT+TGG - chr3_1:18383879-18383898 None:intergenic 35.0%
AATTAAAGAGCTAAGGGACA+AGG + chr3_1:18383982-18384001 Msa0351520:intron 35.0%
! TTCCAATCACAATCAAGTTG+TGG + chr3_1:18384012-18384031 Msa0351520:intron 35.0%
AACCACAACTTGATTGTGAT+TGG - chr3_1:18384017-18384036 None:intergenic 35.0%
! AAATTTGACAGCTGAGCTTT+TGG + chr3_1:18384277-18384296 Msa0351520:intron 35.0%
! AATTTGACAGCTGAGCTTTT+GGG + chr3_1:18384278-18384297 Msa0351520:intron 35.0%
TTTGAGTATTTCTTGGTCTC+TGG - chr3_1:18384336-18384355 None:intergenic 35.0%
AGAGACCAAGAAATACTCAA+AGG + chr3_1:18384335-18384354 Msa0351520:CDS 35.0%
TGACTCCTTTGAGTATTTCT+TGG - chr3_1:18384343-18384362 None:intergenic 35.0%
CGTATATATTCGTGCTTCAT+AGG + chr3_1:18384725-18384744 Msa0351520:intron 35.0%
!!! GGAGATCGTATTAGTTTTAG+TGG + chr3_1:18384906-18384925 Msa0351520:CDS 35.0%
TCCAAGCAAATTTACCACTT+GGG - chr3_1:18384961-18384980 None:intergenic 35.0%
CAGGCATGAAATAGTTGTTA+AGG - chr3_1:18385052-18385071 None:intergenic 35.0%
TGTCATATCAAGCTTTCGAA+AGG + chr3_1:18385714-18385733 Msa0351520:intron 35.0%
!! CTGGCATAGCCTTATTTAAT+AGG - chr3_1:18385751-18385770 None:intergenic 35.0%
GGCAATTTAAATCCTAAGTC+TGG - chr3_1:18385782-18385801 None:intergenic 35.0%
AGATCTTGTAAAGCCTAACT+CGG + chr3_1:18385856-18385875 Msa0351520:intron 35.0%
AAATAGGAGTGGAAATAGGT+TGG - chr3_1:18385883-18385902 None:intergenic 35.0%
! GCTTATAGATGCTTTGAATG+TGG + chr3_1:18385932-18385951 Msa0351520:intron 35.0%
!! TTTCTTATGTGCTTTTTGCG+TGG - chr3_1:18386056-18386075 None:intergenic 35.0%
TAACTATGGAGCAAGGAAAA+TGG + chr3_1:18386226-18386245 Msa0351520:CDS 35.0%
!! GCAAGGAAAATGGCTTTATT+TGG + chr3_1:18386236-18386255 Msa0351520:CDS 35.0%
ACATAGATGAATCTTGCATC+AGG - chr3_1:18386404-18386423 None:intergenic 35.0%
! GTGGACAATACTTTAAAAGG+TGG - chr3_1:18386722-18386741 None:intergenic 35.0%
TCATGTTGAATTGAGAAGTG+TGG + chr3_1:18386792-18386811 Msa0351520:intron 35.0%
! CATGTTGAATTGAGAAGTGT+GGG + chr3_1:18386793-18386812 Msa0351520:intron 35.0%
CTTAAAGTCTCACATTGCTT+AGG - chr3_1:18386850-18386869 None:intergenic 35.0%
GATCAATTGACGACTCTATT+GGG - chr3_1:18386931-18386950 None:intergenic 35.0%
TCCTAAATACCTTGCGTATT+CGG - chr3_1:18387009-18387028 None:intergenic 35.0%
! GCTAATTCATGGTCTTTTCT+AGG - chr3_1:18387046-18387065 None:intergenic 35.0%
CACTATACAAGGCTAATTCA+TGG - chr3_1:18387057-18387076 None:intergenic 35.0%
CCTTGTATAGTGAGAGATTA+GGG + chr3_1:18387065-18387084 Msa0351520:intron 35.0%
AGTTGTTTGGGTAAGTGTAA+AGG - chr3_1:18387100-18387119 None:intergenic 35.0%
ATACATGTGTTAGCGTCTTA+AGG + chr3_1:18387239-18387258 Msa0351520:intron 35.0%
CTTGACAAAGTTCAACTCTT+AGG - chr3_1:18387824-18387843 None:intergenic 35.0%
TGTGGAATAGGAAGAAACAA+TGG + chr3_1:18387905-18387924 Msa0351520:CDS 35.0%
ATTACTACATGGGGTTTGAA+GGG - chr3_1:18387948-18387967 None:intergenic 35.0%
TATTACTACATGGGGTTTGA+AGG - chr3_1:18387949-18387968 None:intergenic 35.0%
TTCAAACCCCATGTAGTAAT+AGG + chr3_1:18387948-18387967 Msa0351520:CDS 35.0%
CTCATTCCTATTACTACATG+GGG - chr3_1:18387957-18387976 None:intergenic 35.0%
TTGGCAACACTATAATTGGT+AGG + chr3_1:18388011-18388030 Msa0351520:CDS 35.0%
AAAAACCTCTTGTACACCTT+TGG - chr3_1:18388211-18388230 None:intergenic 35.0%
!!! AGGTTTTTGTTTTGTTTGGG+TGG + chr3_1:18388223-18388242 Msa0351520:three_prime_UTR 35.0%
!!! GGTTTTTAGCTTTCCTTCTT+TGG - chr3_1:18388292-18388311 None:intergenic 35.0%
TTTCATGAAACTACACTTGG+TGG - chr3_1:18388313-18388332 None:intergenic 35.0%
TGTGTGTGTAAGTGAATGAG+TGG - chr3_1:18382582-18382601 None:intergenic 40.0%
GGGAAGTCAATATTGTGAAG+TGG + chr3_1:18382671-18382690 Msa0351520:CDS 40.0%
!! ATGGGTAATGGTAGTGGTTA+TGG + chr3_1:18382705-18382724 Msa0351520:CDS 40.0%
!! TGGGTAATGGTAGTGGTTAT+GGG + chr3_1:18382706-18382725 Msa0351520:CDS 40.0%
TATGGGTTTGTGGAGTAGTA+AGG + chr3_1:18382723-18382742 Msa0351520:CDS 40.0%
! ATGAAGTAGCAAGGTACTTG+AGG - chr3_1:18382760-18382779 None:intergenic 40.0%
!!! CATTTTTGGTGACTCTTTGG+TGG + chr3_1:18382777-18382796 Msa0351520:CDS 40.0%
!! CACCGTCTTTTTGAGGAAAA+AGG - chr3_1:18383079-18383098 None:intergenic 40.0%
! AAAGGAACACCGTCTTTTTG+AGG - chr3_1:18383086-18383105 None:intergenic 40.0%
TGTGGTTCCATCACAAATCT+TGG + chr3_1:18384030-18384049 Msa0351520:intron 40.0%
GTGGTTCCATCACAAATCTT+GGG + chr3_1:18384031-18384050 Msa0351520:intron 40.0%
! TCCCAAGTGGTAAATTTGCT+TGG + chr3_1:18384957-18384976 Msa0351520:CDS 40.0%
CTCCAAGCAAATTTACCACT+TGG - chr3_1:18384962-18384981 None:intergenic 40.0%
! GGTAAATTTGCTTGGAGATG+AGG + chr3_1:18384965-18384984 Msa0351520:CDS 40.0%
AGAACATCAGCATACTGTTG+TGG - chr3_1:18385101-18385120 None:intergenic 40.0%
AAGCATATGCTCAACAACTC+AGG + chr3_1:18385126-18385145 Msa0351520:CDS 40.0%
AGCATATGCTCAACAACTCA+GGG + chr3_1:18385127-18385146 Msa0351520:CDS 40.0%
TTAGCTCAAAACAGTCCAGA+TGG + chr3_1:18386290-18386309 Msa0351520:CDS 40.0%
! CTACTAAGGGGTAACTGTTT+TGG - chr3_1:18386878-18386897 None:intergenic 40.0%
TACCCCTTAGTAGAGACTAA+AGG + chr3_1:18386885-18386904 Msa0351520:intron 40.0%
ACCCCTTAGTAGAGACTAAA+GGG + chr3_1:18386886-18386905 Msa0351520:intron 40.0%
TCCCTTTAGTCTCTACTAAG+GGG - chr3_1:18386890-18386909 None:intergenic 40.0%
CTCCCTTTAGTCTCTACTAA+GGG - chr3_1:18386891-18386910 None:intergenic 40.0%
TCTCCCTTTAGTCTCTACTA+AGG - chr3_1:18386892-18386911 None:intergenic 40.0%
GGATCAATTGACGACTCTAT+TGG - chr3_1:18386932-18386951 None:intergenic 40.0%
CCAAATATCTCAAGTCCTTG+CGG - chr3_1:18386953-18386972 None:intergenic 40.0%
! TCCGAATACGCAAGGTATTT+AGG + chr3_1:18387005-18387024 Msa0351520:intron 40.0%
GCCTTGTATAGTGAGAGATT+AGG + chr3_1:18387064-18387083 Msa0351520:intron 40.0%
CCCTAATCTCTCACTATACA+AGG - chr3_1:18387068-18387087 None:intergenic 40.0%
TCGCTAAAGGACAGTTGTTT+GGG - chr3_1:18387112-18387131 None:intergenic 40.0%
! TTACTCACATGTGTCGCTAA+AGG - chr3_1:18387125-18387144 None:intergenic 40.0%
ATTTGTTTCAGACCGTGTCA+AGG - chr3_1:18387290-18387309 None:intergenic 40.0%
TAGTTCAAAGTTCAGACGTG+AGG + chr3_1:18387386-18387405 Msa0351520:intron 40.0%
!! GTTACAAATGAAGGGTGTTG+TGG + chr3_1:18387887-18387906 Msa0351520:CDS 40.0%
!! AATGAAGGGTGTTGTGGAAT+AGG + chr3_1:18387893-18387912 Msa0351520:CDS 40.0%
TTACTACATGGGGTTTGAAG+GGG - chr3_1:18387947-18387966 None:intergenic 40.0%
GAGGTTGGCAACACTATAAT+TGG + chr3_1:18388007-18388026 Msa0351520:CDS 40.0%
GCTAAGCGATTGATGTCAAT+AGG - chr3_1:18388073-18388092 None:intergenic 40.0%
! TTATGCCAAAGGTGTACAAG+AGG + chr3_1:18388203-18388222 Msa0351520:three_prime_UTR 40.0%
TTTGGATCCACATCCAAAGA+AGG + chr3_1:18388276-18388295 Msa0351520:three_prime_UTR 40.0%
TAGCTTTCCTTCTTTGGATG+TGG - chr3_1:18388286-18388305 None:intergenic 40.0%
! ATGAAGCAATCGTGTCATTG+TGG + chr3_1:18388339-18388358 Msa0351520:three_prime_UTR 40.0%
!! TGGTAGTGGTTATGGGTTTG+TGG + chr3_1:18382713-18382732 Msa0351520:CDS 45.0%
! GTGACTCTTTGGTGGATGAT+GGG + chr3_1:18382785-18382804 Msa0351520:CDS 45.0%
GACTTTAATGGTGGTCCAAC+TGG + chr3_1:18382862-18382881 Msa0351520:CDS 45.0%
TTAATGGTGGTCCAACTGGA+AGG + chr3_1:18382866-18382885 Msa0351520:CDS 45.0%
TAGGCACACAACTAGTACAG+TGG - chr3_1:18383854-18383873 None:intergenic 45.0%
CATGTGCTTGAAATTGGGGT+AGG - chr3_1:18383873-18383892 None:intergenic 45.0%
CTACCCCAATTTCAAGCACA+TGG + chr3_1:18383871-18383890 Msa0351520:intron 45.0%
CTCACGCAAACATGGACTTA+CGG - chr3_1:18384076-18384095 None:intergenic 45.0%
AGACTATGCTCACGCAAACA+TGG - chr3_1:18384084-18384103 None:intergenic 45.0%
TTGCGTGAGCATAGTCTAGT+TGG + chr3_1:18384087-18384106 Msa0351520:intron 45.0%
TGGTCTCTGGCTGTTGAATA+GGG - chr3_1:18384323-18384342 None:intergenic 45.0%
TTGGTCTCTGGCTGTTGAAT+AGG - chr3_1:18384324-18384343 None:intergenic 45.0%
AATTATGCTTCTGCTGCTGC+TGG + chr3_1:18384362-18384381 Msa0351520:CDS 45.0%
GCTGGAATCAGAGAAGAAAC+TGG + chr3_1:18384380-18384399 Msa0351520:CDS 45.0%
GTTCATACACTCCTCCGATT+AGG + chr3_1:18384594-18384613 Msa0351520:intron 45.0%
!! ATATGTGTCGGTGTCAGACA+CGG - chr3_1:18384643-18384662 None:intergenic 45.0%
TTCATGCCTGCATATCCTAG+TGG + chr3_1:18385062-18385081 Msa0351520:CDS 45.0%
TGTCTACCACTAGGATATGC+AGG - chr3_1:18385071-18385090 None:intergenic 45.0%
GGTGTAAACTGTCTACCACT+AGG - chr3_1:18385080-18385099 None:intergenic 45.0%
CCTAAGTCTGGTATGTAGTC+TGG - chr3_1:18385770-18385789 None:intergenic 45.0%
CCAGACTACATACCAGACTT+AGG + chr3_1:18385767-18385786 Msa0351520:intron 45.0%
TCTGGCATGTTGTCTGTCAA+AGG - chr3_1:18385803-18385822 None:intergenic 45.0%
! GAAATAGGTTGGACCGAGTT+AGG - chr3_1:18385872-18385891 None:intergenic 45.0%
TCAACACAAGTGGTACCATC+TGG - chr3_1:18386308-18386327 None:intergenic 45.0%
AGGTGGTGTCTCATACTTGA+GGG - chr3_1:18386705-18386724 None:intergenic 45.0%
AAGGTGGTGTCTCATACTTG+AGG - chr3_1:18386706-18386725 None:intergenic 45.0%
ACACTCTCAACGACTCAAAG+TGG - chr3_1:18386741-18386760 None:intergenic 45.0%
TTGACGACTCTATTGGGAAG+CGG - chr3_1:18386925-18386944 None:intergenic 45.0%
CCGCAAGGACTTGAGATATT+TGG + chr3_1:18386950-18386969 Msa0351520:intron 45.0%
AAGAATGCTCCGAATACGCA+AGG + chr3_1:18386997-18387016 Msa0351520:intron 45.0%
GTCGCTAAAGGACAGTTGTT+TGG - chr3_1:18387113-18387132 None:intergenic 45.0%
TGACTGAATGGACCTTGACA+CGG + chr3_1:18387275-18387294 Msa0351520:intron 45.0%
!!! TTTTGGTGTTAACCCTTCGG+TGG + chr3_1:18387342-18387361 Msa0351520:intron 45.0%
TTAACCCTTCGGTGGTTCAA+GGG + chr3_1:18387350-18387369 Msa0351520:intron 45.0%
! TTTTCCCTTGAACCACCGAA+GGG - chr3_1:18387357-18387376 None:intergenic 45.0%
TTCGGTGGTTCAAGGGAAAA+GGG + chr3_1:18387357-18387376 Msa0351520:intron 45.0%
TAGTGTTGCCAACCTCAGTT+GGG - chr3_1:18388003-18388022 None:intergenic 45.0%
ATAGTGTTGCCAACCTCAGT+TGG - chr3_1:18388004-18388023 None:intergenic 45.0%
!!! GTTTTGTTTGGGTGGCGTAA+AGG + chr3_1:18388231-18388250 Msa0351520:three_prime_UTR 45.0%
!! ATAAAAATTATTTCATAAAA+AGG - chr3_1:18382997-18383016 None:intergenic 5.0%
!!! TTATAAATTTTAAAAGTATT+TGG - chr3_1:18387747-18387766 None:intergenic 5.0%
! GGTGACTCTTTGGTGGATGA+TGG + chr3_1:18382784-18382803 Msa0351520:CDS 50.0%
CCATTGGAGAACCTTCCAGT+TGG - chr3_1:18382880-18382899 None:intergenic 50.0%
CCAACTGGAAGGTTCTCCAA+TGG + chr3_1:18382877-18382896 Msa0351520:CDS 50.0%
!!! AGCTGAGCTTTTGGGATTCG+AGG + chr3_1:18384286-18384305 Msa0351520:intron 50.0%
!!! GCTGAGCTTTTGGGATTCGA+GGG + chr3_1:18384287-18384306 Msa0351520:intron 50.0%
GACATCAGGACACGCCTAAT+CGG - chr3_1:18384611-18384630 None:intergenic 50.0%
GATTAGGCGTGTCCTGATGT+CGG + chr3_1:18384610-18384629 Msa0351520:intron 50.0%
! CCACTTGGGACACTGTCTTT+TGG - chr3_1:18384947-18384966 None:intergenic 50.0%
CCAAAAGACAGTGTCCCAAG+TGG + chr3_1:18384944-18384963 Msa0351520:CDS 50.0%
TGGTGTCTCATACTTGAGGG+TGG - chr3_1:18386702-18386721 None:intergenic 50.0%
TGACGACTCTATTGGGAAGC+GGG - chr3_1:18386924-18386943 None:intergenic 50.0%
GAGTCGTCAATTGATCCGCA+AGG + chr3_1:18386935-18386954 Msa0351520:intron 50.0%
! AACCCGCTCTGTTGACTGAA+TGG + chr3_1:18387263-18387282 Msa0351520:intron 50.0%
GTCCATTCAGTCAACAGAGC+GGG - chr3_1:18387268-18387287 None:intergenic 50.0%
GGTCCATTCAGTCAACAGAG+CGG - chr3_1:18387269-18387288 None:intergenic 50.0%
GTTAACCCTTCGGTGGTTCA+AGG + chr3_1:18387349-18387368 Msa0351520:intron 50.0%
! CTTTTCCCTTGAACCACCGA+AGG - chr3_1:18387358-18387377 None:intergenic 50.0%
CTTCGGTGGTTCAAGGGAAA+AGG + chr3_1:18387356-18387375 Msa0351520:intron 50.0%
GGTTCAAGGGAAAAGGGCTT+TGG + chr3_1:18387363-18387382 Msa0351520:intron 50.0%
GGATGCATTTCACCCAACTG+AGG + chr3_1:18387988-18388007 Msa0351520:CDS 50.0%
GCATTTCACCCAACTGAGGT+TGG + chr3_1:18387992-18388011 Msa0351520:CDS 50.0%
ATCAGGACACGCCTAATCGG+AGG - chr3_1:18384608-18384627 None:intergenic 55.0%
CACGGCACATGTCCGACATC+AGG - chr3_1:18384625-18384644 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 18382549 18388581 18382549 ID=Msa0351520;Name=Msa0351520
chr3_1 mRNA 18382549 18388581 18382549 ID=Msa0351520-mRNA-1;Parent=Msa0351520;Name=Msa0351520-mRNA-1;_AED=0.29;_eAED=0.29;_QI=112|1|1|1|1|1|5|479|369
chr3_1 exon 18382549 18382922 18382549 ID=Msa0351520-mRNA-1:exon:4323;Parent=Msa0351520-mRNA-1
chr3_1 exon 18384288 18384412 18384288 ID=Msa0351520-mRNA-1:exon:4324;Parent=Msa0351520-mRNA-1
chr3_1 exon 18384906 18385148 18384906 ID=Msa0351520-mRNA-1:exon:4325;Parent=Msa0351520-mRNA-1
chr3_1 exon 18386218 18386473 18386218 ID=Msa0351520-mRNA-1:exon:4326;Parent=Msa0351520-mRNA-1
chr3_1 exon 18387879 18388581 18387879 ID=Msa0351520-mRNA-1:exon:4327;Parent=Msa0351520-mRNA-1
chr3_1 five_prime_UTR 18382549 18382660 18382549 ID=Msa0351520-mRNA-1:five_prime_utr;Parent=Msa0351520-mRNA-1
chr3_1 CDS 18382661 18382922 18382661 ID=Msa0351520-mRNA-1:cds;Parent=Msa0351520-mRNA-1
chr3_1 CDS 18384288 18384412 18384288 ID=Msa0351520-mRNA-1:cds;Parent=Msa0351520-mRNA-1
chr3_1 CDS 18384906 18385148 18384906 ID=Msa0351520-mRNA-1:cds;Parent=Msa0351520-mRNA-1
chr3_1 CDS 18386218 18386473 18386218 ID=Msa0351520-mRNA-1:cds;Parent=Msa0351520-mRNA-1
chr3_1 CDS 18387879 18388102 18387879 ID=Msa0351520-mRNA-1:cds;Parent=Msa0351520-mRNA-1
chr3_1 three_prime_UTR 18388103 18388581 18388103 ID=Msa0351520-mRNA-1:three_prime_utr;Parent=Msa0351520-mRNA-1
Gene Sequence

>Msa0351520

ATGGCATCTAGGGAAGTCAATATTGTGAAGTGGATTATGAATTTATGGGTAATGGTAGTGGTTATGGGTTTGTGGAGTAGTAAGGTTGAAGCTGATCCTCAAGTACCTTGCTACTTCATTTTTGGTGACTCTTTGGTGGATGATGGGAACAATAACAACCTAAATTCTTTGGCCAAAGCTAATTATCTTCCTTATGGGATTGACTTTAATGGTGGTCCAACTGGAAGGTTCTCCAATGGAAAAACTACTGTTGATGTCATTGCTGAGCTTTTGGGATTCGAGGGCTACATATCTCCCTATTCAACAGCCAGAGACCAAGAAATACTCAAAGGAGTCAATTATGCTTCTGCTGCTGCTGGAATCAGAGAAGAAACTGGACAACAACTAGGAGATCGTATTAGTTTTAGTGGTCAAGTACAAAACTACCAAAAGACAGTGTCCCAAGTGGTAAATTTGCTTGGAGATGAGGATACAGCTTCAAATTATCTTAGCAAATGCATCTATTCAATTGGATTGGGTAGCAATGATTACCTTAACAACTATTTCATGCCTGCATATCCTAGTGGTAGACAGTTTACACCACAACAGTATGCTGATGTTCTTATTCAAGCATATGCTCAACAACTCAGGATTTTGTATAACTATGGAGCAAGGAAAATGGCTTTATTTGGCATTGGTCAAATAGGTTGCAGTCCAAATGAATTAGCTCAAAACAGTCCAGATGGTACCACTTGTGTTGAAAGAATCAATTCTGCAAACCAATTATTTAACAACGGATTGAAATCTCTTGTTAATCAACTCAACAATGAGCTTCCTGATGCAAGATTCATCTATGTAAATACTTATGGTATCTTTCAAGACATCATAAACAACCCATCATCATTTGGTATAAGAGTTACAAATGAAGGGTGTTGTGGAATAGGAAGAAACAATGGTCAAATTACATGTTTGCCCCTTCAAACCCCATGTAGTAATAGGAATGAGTATCTATTTTGGGATGCATTTCACCCAACTGAGGTTGGCAACACTATAATTGGTAGGAGAGCTTACAATGCTCAATCTGAATCAGATGCTTATCCTATTGACATCAATCGCTTAGCTCAAATATGA
Protein sequence

>Msa0351520

MASREVNIVKWIMNLWVMVVVMGLWSSKVEADPQVPCYFIFGDSLVDDGNNNNLNSLAKANYLPYGIDFNGGPTGRFSNGKTTVDVIAELLGFEGYISPYSTARDQEILKGVNYASAAAGIREETGQQLGDRISFSGQVQNYQKTVSQVVNLLGDEDTASNYLSKCIYSIGLGSNDYLNNYFMPAYPSGRQFTPQQYADVLIQAYAQQLRILYNYGARKMALFGIGQIGCSPNELAQNSPDGTTCVERINSANQLFNNGLKSLVNQLNNELPDARFIYVNTYGIFQDIINNPSSFGIRVTNEGCCGIGRNNGQITCLPLQTPCSNRNEYLFWDAFHPTEVGNTIIGRRAYNAQSESDAYPIDINRLAQI*