Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365370 | RHN69410.1 | 95.109 | 184 | 6 | 1 | 1 | 181 | 1 | 184 | 1.06e-100 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365370 | A0A396IVF9 | 95.109 | 184 | 6 | 1 | 1 | 181 | 1 | 184 | 5.08e-101 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0365370 | 0.824473 | 7.919798e-54 | -8.615850e-47 |
| Msa0010770 | Msa0365370 | 0.832476 | 9.247714e-56 | -8.615850e-47 |
| Msa0022750 | Msa0365370 | -0.819860 | 9.305616e-53 | -8.615850e-47 |
| Msa0027390 | Msa0365370 | 0.828549 | 8.453237e-55 | -8.615850e-47 |
| Msa0039250 | Msa0365370 | 0.825016 | 5.898144e-54 | -8.615850e-47 |
| Msa0054820 | Msa0365370 | 0.800776 | 1.229515e-48 | -8.615850e-47 |
| Msa0055070 | Msa0365370 | 0.805925 | 1.055113e-49 | -8.615850e-47 |
| Msa0091780 | Msa0365370 | 0.806853 | 6.723740e-50 | -8.615850e-47 |
| Msa0092440 | Msa0365370 | 0.837349 | 5.476586e-57 | -8.615850e-47 |
| Msa0117910 | Msa0365370 | 0.813323 | 2.712518e-51 | -8.615850e-47 |
| Msa0119320 | Msa0365370 | 0.810736 | 9.936118e-51 | -8.615850e-47 |
| Msa0126230 | Msa0365370 | 0.817303 | 3.536337e-52 | -8.615850e-47 |
| Msa0133720 | Msa0365370 | 0.836191 | 1.081408e-56 | -8.615850e-47 |
| Msa0133820 | Msa0365370 | 0.834679 | 2.606537e-56 | -8.615850e-47 |
| Msa0138210 | Msa0365370 | 0.822666 | 2.096308e-53 | -8.615850e-47 |
| Msa0142480 | Msa0365370 | 0.805937 | 1.048529e-49 | -8.615850e-47 |
| Msa0143850 | Msa0365370 | 0.808192 | 3.495309e-50 | -8.615850e-47 |
| Msa0155330 | Msa0365370 | 0.806064 | 9.860386e-50 | -8.615850e-47 |
| Msa0160670 | Msa0365370 | 0.809909 | 1.498949e-50 | -8.615850e-47 |
| Msa0165300 | Msa0365370 | 0.832976 | 6.951260e-56 | -8.615850e-47 |
| Msa0177170 | Msa0365370 | 0.801563 | 8.488570e-49 | -8.615850e-47 |
| Msa0181230 | Msa0365370 | 0.809057 | 2.284027e-50 | -8.615850e-47 |
| Msa0183420 | Msa0365370 | 0.833408 | 5.424150e-56 | -8.615850e-47 |
| Msa0200560 | Msa0365370 | 0.807938 | 3.958360e-50 | -8.615850e-47 |
| Msa0202830 | Msa0365370 | 0.803883 | 2.818443e-49 | -8.615850e-47 |
| Msa0227230 | Msa0365370 | 0.806719 | 7.174990e-50 | -8.615850e-47 |
| Msa0230370 | Msa0365370 | 0.810991 | 8.751725e-51 | -8.615850e-47 |
| Msa0236770 | Msa0365370 | 0.807003 | 6.248579e-50 | -8.615850e-47 |
| Msa0365370 | Msa0381000 | 0.810371 | 1.191596e-50 | -8.615850e-47 |
| Msa0365370 | Msa0381080 | 0.811497 | 6.799029e-51 | -8.615850e-47 |
| Msa0365370 | Msa0388220 | 0.806030 | 1.002361e-49 | -8.615850e-47 |
| Msa0365370 | Msa0392200 | 0.802166 | 6.383535e-49 | -8.615850e-47 |
| Msa0365370 | Msa0394690 | 0.804951 | 1.688156e-49 | -8.615850e-47 |
| Msa0365370 | Msa0410300 | 0.806089 | 9.741861e-50 | -8.615850e-47 |
| Msa0365370 | Msa0417650 | 0.819748 | 9.866404e-53 | -8.615850e-47 |
| Msa0365370 | Msa0417730 | 0.818739 | 1.674826e-52 | -8.615850e-47 |
| Msa0365370 | Msa0423840 | 0.816308 | 5.911888e-52 | -8.615850e-47 |
| Msa0365370 | Msa0431770 | 0.835135 | 2.001183e-56 | -8.615850e-47 |
| Msa0365370 | Msa0432070 | 0.800840 | 1.193300e-48 | -8.615850e-47 |
| Msa0365370 | Msa0432170 | 0.800655 | 1.301764e-48 | -8.615850e-47 |
| Msa0365370 | Msa0442310 | 0.801371 | 9.291014e-49 | -8.615850e-47 |
| Msa0365370 | Msa0473980 | 0.808560 | 2.916833e-50 | -8.615850e-47 |
| Msa0365370 | Msa0487780 | 0.800282 | 1.550844e-48 | -8.615850e-47 |
| Msa0365370 | Msa0510290 | 0.833572 | 4.938969e-56 | -8.615850e-47 |
| Msa0365370 | Msa0518960 | 0.800547 | 1.369599e-48 | -8.615850e-47 |
| Msa0365370 | Msa0573040 | 0.811662 | 6.258137e-51 | -8.615850e-47 |
| Msa0365370 | Msa0578090 | 0.801754 | 7.755429e-49 | -8.615850e-47 |
| Msa0365370 | Msa0588120 | 0.810537 | 1.097407e-50 | -8.615850e-47 |
| Msa0365370 | Msa0645170 | 0.820505 | 6.619872e-53 | -8.615850e-47 |
| Msa0365370 | Msa0687450 | 0.864198 | 1.444859e-64 | -8.615850e-47 |
| Msa0365370 | Msa0689420 | 0.812604 | 3.899539e-51 | -8.615850e-47 |
| Msa0365370 | Msa0689760 | 0.836783 | 7.641787e-57 | -8.615850e-47 |
| Msa0365370 | Msa0691050 | 0.804009 | 2.653573e-49 | -8.615850e-47 |
| Msa0365370 | Msa0702570 | 0.832538 | 8.927627e-56 | -8.615850e-47 |
| Msa0365370 | Msa0716860 | 0.831288 | 1.817811e-55 | -8.615850e-47 |
| Msa0365370 | Msa0749400 | 0.822005 | 2.985576e-53 | -8.615850e-47 |
| Msa0365370 | Msa0756530 | 0.813054 | 3.107438e-51 | -8.615850e-47 |
| Msa0365370 | Msa0756930 | 0.809697 | 1.664928e-50 | -8.615850e-47 |
| Msa0365370 | Msa0757800 | 0.832840 | 7.514009e-56 | -8.615850e-47 |
| Msa0365370 | Msa0787850 | 0.803332 | 3.667147e-49 | -8.615850e-47 |
| Msa0365370 | Msa0820890 | 0.812341 | 4.450622e-51 | -8.615850e-47 |
| Msa0365370 | Msa0829190 | 0.801552 | 8.534115e-49 | -8.615850e-47 |
| Msa0365370 | Msa0861830 | 0.806709 | 7.212445e-50 | -8.615850e-47 |
| Msa0365370 | Msa0869010 | 0.805913 | 1.061266e-49 | -8.615850e-47 |
| Msa0365370 | Msa0873860 | 0.809785 | 1.593324e-50 | -8.615850e-47 |
| Msa0365370 | Msa0888940 | 0.818247 | 2.165006e-52 | -8.615850e-47 |
| Msa0365370 | Msa0893810 | 0.806424 | 8.283832e-50 | -8.615850e-47 |
| Msa0365370 | Msa0896240 | 0.807115 | 5.916397e-50 | -8.615850e-47 |
| Msa0365370 | Msa0959010 | 0.815726 | 7.973392e-52 | -8.615850e-47 |
| Msa0365370 | Msa0969330 | 0.808978 | 2.374952e-50 | -8.615850e-47 |
| Msa0365370 | Msa0975940 | 0.815804 | 7.662589e-52 | -8.615850e-47 |
| Msa0365370 | Msa0980940 | 0.824677 | 7.090370e-54 | -8.615850e-47 |
| Msa0365370 | Msa0993530 | 0.814133 | 1.798980e-51 | -8.615850e-47 |
| Msa0365370 | Msa1004420 | 0.858416 | 8.363765e-63 | -8.615850e-47 |
| Msa0365370 | Msa1010070 | 0.831017 | 2.117953e-55 | -8.615850e-47 |
| Msa0365370 | Msa1038080 | 0.805851 | 1.093086e-49 | -8.615850e-47 |
| Msa0365370 | Msa1051600 | 0.842853 | 2.005795e-58 | -8.615850e-47 |
| Msa0365370 | Msa1056460 | 0.820174 | 7.883027e-53 | -8.615850e-47 |
| Msa0365370 | Msa1077070 | 0.806348 | 8.594403e-50 | -8.615850e-47 |
| Msa0365370 | Msa1097230 | 0.800840 | 1.193300e-48 | -8.615850e-47 |
| Msa0365370 | Msa1113590 | 0.835654 | 1.479870e-56 | -8.615850e-47 |
| Msa0365370 | Msa1122780 | 0.813664 | 2.282645e-51 | -8.615850e-47 |
| Msa0365370 | Msa1129690 | 0.802012 | 6.866525e-49 | -8.615850e-47 |
| Msa0365370 | Msa1169720 | 0.809877 | 1.522861e-50 | -8.615850e-47 |
| Msa0365370 | Msa1204730 | 0.813536 | 2.435546e-51 | -8.615850e-47 |
| Msa0365370 | Msa1211340 | 0.808222 | 3.442791e-50 | -8.615850e-47 |
| Msa0365370 | Msa1224830 | 0.831953 | 1.245970e-55 | -8.615850e-47 |
| Msa0365370 | Msa1259640 | 0.803148 | 4.002953e-49 | -8.615850e-47 |
| Msa0365370 | Msa1282500 | 0.804160 | 2.468267e-49 | -8.615850e-47 |
| Msa0365370 | Msa1296300 | 0.805168 | 1.520206e-49 | -8.615850e-47 |
| Msa0365370 | Msa1299330 | 0.816601 | 5.083600e-52 | -8.615850e-47 |
| Msa0365370 | Msa1302060 | 0.810088 | 1.371606e-50 | -8.615850e-47 |
| Msa0365370 | Msa1306390 | 0.806078 | 9.793213e-50 | -8.615850e-47 |
| Msa0365370 | Msa1329790 | 0.808027 | 3.789839e-50 | -8.615850e-47 |
| Msa0365370 | Msa1338250 | 0.808324 | 3.275020e-50 | -8.615850e-47 |
| Msa0365370 | Msa1393800 | 0.819786 | 9.673531e-53 | -8.615850e-47 |
| Msa0365370 | Msa1402270 | 0.800105 | 1.684374e-48 | -8.615850e-47 |
| Msa0365370 | Msa1415940 | 0.808828 | 2.556943e-50 | -8.615850e-47 |
| Msa0365370 | Msa1418260 | 0.803262 | 3.790936e-49 | -8.615850e-47 |
| Msa0365370 | Msa1420250 | 0.837472 | 5.095827e-57 | -8.615850e-47 |
| Msa0365370 | Msa1426910 | 0.810330 | 1.216079e-50 | -8.615850e-47 |
| Msa0365370 | Msa1464290 | 0.824037 | 1.002585e-53 | -8.615850e-47 |
| Msa0365370 | Msa1466590 | 0.808745 | 2.663175e-50 | -8.615850e-47 |
| Msa0365370 | Msa1467000 | 0.805642 | 1.209636e-49 | -8.615850e-47 |
| Msa0250670 | Msa0365370 | 0.803281 | 3.757324e-49 | -8.615850e-47 |
| Msa0269520 | Msa0365370 | 0.837922 | 3.905256e-57 | -8.615850e-47 |
| Msa0279390 | Msa0365370 | 0.818358 | 2.043451e-52 | -8.615850e-47 |
| Msa0304840 | Msa0365370 | 0.801749 | 7.775464e-49 | -8.615850e-47 |
| Msa0318880 | Msa0365370 | 0.834867 | 2.338058e-56 | -8.615850e-47 |
| Msa0322590 | Msa0365370 | 0.821081 | 4.879697e-53 | -8.615850e-47 |
| Msa0343190 | Msa0365370 | 0.800780 | 1.227334e-48 | -8.615850e-47 |
| Msa0343300 | Msa0365370 | 0.807328 | 5.333235e-50 | -8.615850e-47 |
| Msa0346990 | Msa0365370 | 0.808865 | 2.510267e-50 | -8.615850e-47 |
| Msa0347950 | Msa0365370 | 0.800846 | 1.189772e-48 | -8.615850e-47 |
| Msa0347990 | Msa0365370 | 0.813115 | 3.013756e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365370 | MtrunA17_Chr3g0124441 | 95.109 | 184 | 6 | 1 | 1 | 181 | 1 | 184 | 9.79e-105 | 318 |
| Msa0365370 | MtrunA17_Chr8g0382801 | 42.308 | 208 | 81 | 7 | 5 | 195 | 3 | 188 | 4.35e-29 | 115 |
| Msa0365370 | MtrunA17_Chr3g0124501 | 85.965 | 57 | 8 | 0 | 192 | 248 | 11 | 67 | 1.42e-27 | 100 |
| Msa0365370 | MtrunA17_Chr3g0124511 | 78.947 | 57 | 10 | 1 | 192 | 248 | 11 | 65 | 1.06e-23 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365370 | AT4G39680.2 | 63.636 | 66 | 24 | 0 | 3 | 68 | 2 | 67 | 2.50e-20 | 90.1 |
| Msa0365370 | AT4G39680.1 | 63.636 | 66 | 24 | 0 | 3 | 68 | 2 | 67 | 2.50e-20 | 90.1 |
Find 81 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCAAAATACCCGATTT+TGG | 0.184842 | 3_1:+59419577 | Msa0365370:CDS |
| CCCTCGGCAGCCTCCTGTTC+GGG | 0.257259 | 3_1:-59419779 | None:intergenic |
| AGCGAAGGTTCCAGAGGTTT+TGG | 0.282002 | 3_1:+59419946 | Msa0365370:CDS |
| TAGTTATCATTATGCTGAAT+TGG | 0.295284 | 3_1:-59420933 | None:intergenic |
| TGCTGAGGCTGCCCGCAAAA+AGG | 0.311243 | 3_1:+59419733 | Msa0365370:CDS |
| GGAAGATTTAATTAATCGTT+TGG | 0.334990 | 3_1:+59419682 | Msa0365370:CDS |
| ACCCTCGGCAGCCTCCTGTT+CGG | 0.353782 | 3_1:-59419780 | None:intergenic |
| ACACTATTATTAGCGTCAAC+TGG | 0.358153 | 3_1:-59420013 | None:intergenic |
| TAAATCTTCCTTCAAACCTT+TGG | 0.362159 | 3_1:-59419669 | None:intergenic |
| AGTTCAAGTTCTAGTACTAT+TGG | 0.372196 | 3_1:+59420881 | Msa0365370:CDS |
| AGTTATCATTATGCTGAATT+GGG | 0.377202 | 3_1:-59420932 | None:intergenic |
| ATAGGCTTATCATCCAAAAT+CGG | 0.388230 | 3_1:-59419590 | None:intergenic |
| GGAAGAGGAAAGAGTAAGAA+AGG | 0.395758 | 3_1:+59420817 | Msa0365370:CDS |
| GCTGAATTGGGTGCAACTCC+TGG | 0.396714 | 3_1:-59420920 | None:intergenic |
| GAAGGAAAAGATGAAAATAA+TGG | 0.396847 | 3_1:+59420796 | Msa0365370:CDS |
| TAGTACTATTGGTAAGAATA+AGG | 0.408553 | 3_1:+59420892 | Msa0365370:CDS |
| TACAATTCAAGCTTCTGAAC+AGG | 0.411244 | 3_1:+59419883 | Msa0365370:CDS |
| GAAGGATGAGGTTAACGGTT+TGG | 0.423362 | 3_1:+59419808 | Msa0365370:CDS |
| AGCGTCCACATTAATAGTCT+TGG | 0.452623 | 3_1:-59419858 | None:intergenic |
| CAGCCTCCCTTTCCTCGCGA+AGG | 0.456940 | 3_1:-59419712 | None:intergenic |
| AGCCTCCCTTTCCTCGCGAA+GGG | 0.462954 | 3_1:-59419711 | None:intergenic |
| TCGAAGAAGGATGAGGTTAA+CGG | 0.469940 | 3_1:+59419803 | Msa0365370:CDS |
| GCTTCTGAACAGGGGAATAG+TGG | 0.471998 | 3_1:+59419893 | Msa0365370:CDS |
| CCCCGAACAGGAGGCTGCCG+AGG | 0.472526 | 3_1:+59419778 | Msa0365370:CDS |
| ACAGTGGTCTCCACATTAGA+AGG | 0.475659 | 3_1:-59420103 | None:intergenic |
| CCTCGGCAGCCTCCTGTTCG+GGG | 0.481454 | 3_1:-59419778 | None:intergenic |
| CGAGGAAAGGGAGGCTGCTG+AGG | 0.487534 | 3_1:+59419718 | Msa0365370:CDS |
| TGAAGCCCTTCGCGAGGAAA+GGG | 0.488032 | 3_1:+59419706 | Msa0365370:CDS |
| GCTACATTATCCGTATCAAA+TGG | 0.494449 | 3_1:-59419926 | None:intergenic |
| GTTGGCTACCAAAGGTTTGA+AGG | 0.496253 | 3_1:+59419661 | Msa0365370:CDS |
| CGGTATTAAGAATGTTGACC+AGG | 0.498907 | 3_1:+59419976 | Msa0365370:CDS |
| CACTATTATTAGCGTCAACT+GGG | 0.501134 | 3_1:-59420012 | None:intergenic |
| CTCATCCTTCTTCGAACCCT+CGG | 0.504768 | 3_1:-59419795 | None:intergenic |
| GGAACTGAAAAGAAGGAAGT+TGG | 0.504901 | 3_1:+59419643 | Msa0365370:CDS |
| AAAGATGAAAATAATGGAAG+AGG | 0.505035 | 3_1:+59420802 | Msa0365370:CDS |
| GAAGAGGAAAGAGTAAGAAA+GGG | 0.505110 | 3_1:+59420818 | Msa0365370:CDS |
| GTGTCAGCAATGGATCTAGA+AGG | 0.506477 | 3_1:+59420034 | Msa0365370:CDS |
| CCGTCATTATCCAAAACCTC+TGG | 0.507635 | 3_1:-59419956 | None:intergenic |
| TAGGCTTATCATCCAAAATC+GGG | 0.516136 | 3_1:-59419589 | None:intergenic |
| TGAAAGAGGAACTGAAAAGA+AGG | 0.524744 | 3_1:+59419636 | Msa0365370:CDS |
| GGCTGCCGAGGGTTCGAAGA+AGG | 0.528303 | 3_1:+59419790 | Msa0365370:CDS |
| TAATGTGGAGACCACTGTTA+CGG | 0.532655 | 3_1:+59420108 | Msa0365370:CDS |
| GGAAAGAGTAAGAAAGGGAG+TGG | 0.533464 | 3_1:+59420823 | Msa0365370:CDS |
| TGATCAAAATAGAAAGGTGC+AGG | 0.533534 | 3_1:+59420856 | Msa0365370:CDS |
| GTAAGAAAGGGAGTGGTAAG+TGG | 0.534791 | 3_1:+59420830 | Msa0365370:CDS |
| ATGAAGCCCTTCGCGAGGAA+AGG | 0.536573 | 3_1:+59419705 | Msa0365370:CDS |
| TGGTCTCCACATTAGAAGGA+TGG | 0.538909 | 3_1:-59420099 | None:intergenic |
| ATCTGCTAACGCGGGAGAGG+AGG | 0.540755 | 3_1:+59420069 | Msa0365370:CDS |
| CCCGAACAGGAGGCTGCCGA+GGG | 0.546318 | 3_1:+59419779 | Msa0365370:CDS |
| GTAACCTTCCACTTATCGAT+AGG | 0.547256 | 3_1:-59419608 | None:intergenic |
| GGTAAGAATAAGGTGCATCC+AGG | 0.549121 | 3_1:+59420902 | Msa0365370:CDS |
| TGTAGTTGAACCATTTGATA+CGG | 0.550089 | 3_1:+59419916 | Msa0365370:CDS |
| GGAATCTGCTAACGCGGGAG+AGG | 0.550865 | 3_1:+59420066 | Msa0365370:CDS |
| CGAGGGTTCGAAGAAGGATG+AGG | 0.558391 | 3_1:+59419796 | Msa0365370:CDS |
| AGAAGGAAGTTGGCTACCAA+AGG | 0.560091 | 3_1:+59419653 | Msa0365370:CDS |
| AAAGGAACAGGAGGCTGCTG+AGG | 0.560111 | 3_1:+59419751 | Msa0365370:CDS |
| TGGTGATGATCAAAATAGAA+AGG | 0.562221 | 3_1:+59420850 | Msa0365370:CDS |
| GGTCTCCACATTAGAAGGAT+GGG | 0.564973 | 3_1:-59420098 | None:intergenic |
| CTGGGTCAGTGACACCATCC+TGG | 0.570143 | 3_1:-59419994 | None:intergenic |
| CTCGGCAGCCTCCTGTTCGG+GGG | 0.570874 | 3_1:-59419777 | None:intergenic |
| TGTTATGCAGAAGAGGCTGA+AGG | 0.584305 | 3_1:+59420778 | Msa0365370:intron |
| ACAATTCAAGCTTCTGAACA+GGG | 0.584680 | 3_1:+59419884 | Msa0365370:CDS |
| ATGATAAGCCTATCGATAAG+TGG | 0.585790 | 3_1:+59419600 | Msa0365370:CDS |
| ATTAAGAATGTTGACCAGGA+TGG | 0.588968 | 3_1:+59419980 | Msa0365370:CDS |
| TTTGGATGAAGCCCTTCGCG+AGG | 0.590917 | 3_1:+59419700 | Msa0365370:CDS |
| GAAGGTTACAGAGCTGAAAG+AGG | 0.592540 | 3_1:+59419622 | Msa0365370:CDS |
| TAATAATAGTGTGTCAGCAA+TGG | 0.604484 | 3_1:+59420024 | Msa0365370:CDS |
| GGATCTAGAAGGTGAACATG+TGG | 0.611667 | 3_1:+59420045 | Msa0365370:CDS |
| TGATACGGATAATGTAGCGA+AGG | 0.620705 | 3_1:+59419931 | Msa0365370:CDS |
| AGCCCTTCGCGAGGAAAGGG+AGG | 0.624067 | 3_1:+59419709 | Msa0365370:CDS |
| AGTCTCGGTGACCACAGTCT+CGG | 0.628272 | 3_1:-59420134 | None:intergenic |
| TGTTGCCCATCCTTCTAATG+TGG | 0.635281 | 3_1:+59420093 | Msa0365370:CDS |
| ACATGTGGAATCTGCTAACG+CGG | 0.649730 | 3_1:+59420060 | Msa0365370:CDS |
| TAAGCCTATCGATAAGTGGA+AGG | 0.650725 | 3_1:+59419604 | Msa0365370:CDS |
| AGATTCCAAGACTATTAATG+TGG | 0.651583 | 3_1:+59419853 | Msa0365370:CDS |
| TAATGTAGCGAAGGTTCCAG+AGG | 0.655550 | 3_1:+59419940 | Msa0365370:CDS |
| AAGACTATTAATGTGGACGC+TGG | 0.657214 | 3_1:+59419860 | Msa0365370:CDS |
| TGTTACGGTAACCGAGACTG+TGG | 0.674195 | 3_1:+59420123 | Msa0365370:CDS |
| CAATTCAAGCTTCTGAACAG+GGG | 0.690052 | 3_1:+59419885 | Msa0365370:CDS |
| CATGTGGAATCTGCTAACGC+GGG | 0.690431 | 3_1:+59420061 | Msa0365370:CDS |
| AGTCTCGGTTACCGTAACAG+TGG | 0.725404 | 3_1:-59420119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATACATTAATATGG+TGG | - | chr3_1:59420322-59420341 | None:intergenic | 15.0% |
| !! | TGTATATATATATATTTGTG+TGG | + | chr3_1:59420331-59420350 | Msa0365370:intron | 15.0% |
| !! | GTATTATGGAAATTAAAATT+TGG | - | chr3_1:59420436-59420455 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTCCATAATACA+TGG | + | chr3_1:59420437-59420456 | Msa0365370:intron | 15.0% |
| !! | GACATGTTATATTAATTATT+TGG | - | chr3_1:59420728-59420747 | None:intergenic | 15.0% |
| !! | ATATATATACATTAATATGG+TGG | - | chr3_1:59420322-59420341 | None:intergenic | 15.0% |
| !! | TGTATATATATATATTTGTG+TGG | + | chr3_1:59420331-59420350 | Msa0365370:intron | 15.0% |
| !! | GTATTATGGAAATTAAAATT+TGG | - | chr3_1:59420436-59420455 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTCCATAATACA+TGG | + | chr3_1:59420437-59420456 | Msa0365370:intron | 15.0% |
| !! | GACATGTTATATTAATTATT+TGG | - | chr3_1:59420728-59420747 | None:intergenic | 15.0% |
| !! | TGTGACATATATTTAGTTAA+CGG | + | chr3_1:59420382-59420401 | Msa0365370:intron | 20.0% |
| !! | TAATATAACATGTCTTCAAT+TGG | + | chr3_1:59420734-59420753 | Msa0365370:intron | 20.0% |
| !! | TGTGACATATATTTAGTTAA+CGG | + | chr3_1:59420382-59420401 | Msa0365370:intron | 20.0% |
| !! | TAATATAACATGTCTTCAAT+TGG | + | chr3_1:59420734-59420753 | Msa0365370:intron | 20.0% |
| ! | GGAAGATTTAATTAATCGTT+TGG | + | chr3_1:59419682-59419701 | Msa0365370:CDS | 25.0% |
| ! | ATATACATTAATATGGTGGT+CGG | - | chr3_1:59420318-59420337 | None:intergenic | 25.0% |
| !!! | AAATTTTTGTTATGCAGAAG+AGG | + | chr3_1:59420771-59420790 | Msa0365370:intron | 25.0% |
| ! | GAAGGAAAAGATGAAAATAA+TGG | + | chr3_1:59420796-59420815 | Msa0365370:CDS | 25.0% |
| !! | AAAGATGAAAATAATGGAAG+AGG | + | chr3_1:59420802-59420821 | Msa0365370:CDS | 25.0% |
| ! | TAGTACTATTGGTAAGAATA+AGG | + | chr3_1:59420892-59420911 | Msa0365370:CDS | 25.0% |
| ! | GGAAGATTTAATTAATCGTT+TGG | + | chr3_1:59419682-59419701 | Msa0365370:CDS | 25.0% |
| ! | ATATACATTAATATGGTGGT+CGG | - | chr3_1:59420318-59420337 | None:intergenic | 25.0% |
| !!! | AAATTTTTGTTATGCAGAAG+AGG | + | chr3_1:59420771-59420790 | Msa0365370:intron | 25.0% |
| ! | GAAGGAAAAGATGAAAATAA+TGG | + | chr3_1:59420796-59420815 | Msa0365370:CDS | 25.0% |
| !! | AAAGATGAAAATAATGGAAG+AGG | + | chr3_1:59420802-59420821 | Msa0365370:CDS | 25.0% |
| ! | TAGTACTATTGGTAAGAATA+AGG | + | chr3_1:59420892-59420911 | Msa0365370:CDS | 25.0% |
| ! | GAATTCAAAATACCCGATTT+TGG | + | chr3_1:59419577-59419596 | Msa0365370:CDS | 30.0% |
| ATAGGCTTATCATCCAAAAT+CGG | - | chr3_1:59419593-59419612 | None:intergenic | 30.0% | |
| TAAATCTTCCTTCAAACCTT+TGG | - | chr3_1:59419672-59419691 | None:intergenic | 30.0% | |
| AGATTCCAAGACTATTAATG+TGG | + | chr3_1:59419853-59419872 | Msa0365370:CDS | 30.0% | |
| TGTAGTTGAACCATTTGATA+CGG | + | chr3_1:59419916-59419935 | Msa0365370:CDS | 30.0% | |
| TAATAATAGTGTGTCAGCAA+TGG | + | chr3_1:59420024-59420043 | Msa0365370:CDS | 30.0% | |
| ATTAATGTTGCTATGGTTTG+TGG | - | chr3_1:59420531-59420550 | None:intergenic | 30.0% | |
| GTCACTAATTAATGTTGCTA+TGG | - | chr3_1:59420538-59420557 | None:intergenic | 30.0% | |
| TCCCAAAGATGGAATTTATA+GGG | - | chr3_1:59420624-59420643 | None:intergenic | 30.0% | |
| TTCCCAAAGATGGAATTTAT+AGG | - | chr3_1:59420625-59420644 | None:intergenic | 30.0% | |
| ! | TGGTGATGATCAAAATAGAA+AGG | + | chr3_1:59420850-59420869 | Msa0365370:CDS | 30.0% |
| ! | AGTTCAAGTTCTAGTACTAT+TGG | + | chr3_1:59420881-59420900 | Msa0365370:CDS | 30.0% |
| ! | GAATTCAAAATACCCGATTT+TGG | + | chr3_1:59419577-59419596 | Msa0365370:CDS | 30.0% |
| ATAGGCTTATCATCCAAAAT+CGG | - | chr3_1:59419593-59419612 | None:intergenic | 30.0% | |
| TAAATCTTCCTTCAAACCTT+TGG | - | chr3_1:59419672-59419691 | None:intergenic | 30.0% | |
| AGATTCCAAGACTATTAATG+TGG | + | chr3_1:59419853-59419872 | Msa0365370:CDS | 30.0% | |
| TGTAGTTGAACCATTTGATA+CGG | + | chr3_1:59419916-59419935 | Msa0365370:CDS | 30.0% | |
| TAATAATAGTGTGTCAGCAA+TGG | + | chr3_1:59420024-59420043 | Msa0365370:CDS | 30.0% | |
| ATTAATGTTGCTATGGTTTG+TGG | - | chr3_1:59420531-59420550 | None:intergenic | 30.0% | |
| GTCACTAATTAATGTTGCTA+TGG | - | chr3_1:59420538-59420557 | None:intergenic | 30.0% | |
| TCCCAAAGATGGAATTTATA+GGG | - | chr3_1:59420624-59420643 | None:intergenic | 30.0% | |
| TTCCCAAAGATGGAATTTAT+AGG | - | chr3_1:59420625-59420644 | None:intergenic | 30.0% | |
| ! | TGGTGATGATCAAAATAGAA+AGG | + | chr3_1:59420850-59420869 | Msa0365370:CDS | 30.0% |
| ! | AGTTCAAGTTCTAGTACTAT+TGG | + | chr3_1:59420881-59420900 | Msa0365370:CDS | 30.0% |
| TAGGCTTATCATCCAAAATC+GGG | - | chr3_1:59419592-59419611 | None:intergenic | 35.0% | |
| ATGATAAGCCTATCGATAAG+TGG | + | chr3_1:59419600-59419619 | Msa0365370:CDS | 35.0% | |
| TGAAAGAGGAACTGAAAAGA+AGG | + | chr3_1:59419636-59419655 | Msa0365370:CDS | 35.0% | |
| TACAATTCAAGCTTCTGAAC+AGG | + | chr3_1:59419883-59419902 | Msa0365370:CDS | 35.0% | |
| ACAATTCAAGCTTCTGAACA+GGG | + | chr3_1:59419884-59419903 | Msa0365370:CDS | 35.0% | |
| GCTACATTATCCGTATCAAA+TGG | - | chr3_1:59419929-59419948 | None:intergenic | 35.0% | |
| ATTAAGAATGTTGACCAGGA+TGG | + | chr3_1:59419980-59419999 | Msa0365370:CDS | 35.0% | |
| CACTATTATTAGCGTCAACT+GGG | - | chr3_1:59420015-59420034 | None:intergenic | 35.0% | |
| ACACTATTATTAGCGTCAAC+TGG | - | chr3_1:59420016-59420035 | None:intergenic | 35.0% | |
| TGTCATAGTGCCATGTATTA+TGG | - | chr3_1:59420450-59420469 | None:intergenic | 35.0% | |
| GAATTTATAGGGGTTGGAAT+TGG | - | chr3_1:59420613-59420632 | None:intergenic | 35.0% | |
| AAGATGGAATTTATAGGGGT+TGG | - | chr3_1:59420619-59420638 | None:intergenic | 35.0% | |
| ACCCCTATAAATTCCATCTT+TGG | + | chr3_1:59420619-59420638 | Msa0365370:intron | 35.0% | |
| CCCAAAGATGGAATTTATAG+GGG | - | chr3_1:59420623-59420642 | None:intergenic | 35.0% | |
| CCCCTATAAATTCCATCTTT+GGG | + | chr3_1:59420620-59420639 | Msa0365370:intron | 35.0% | |
| GAAGAGGAAAGAGTAAGAAA+GGG | + | chr3_1:59420818-59420837 | Msa0365370:CDS | 35.0% | |
| ! | TGATCAAAATAGAAAGGTGC+AGG | + | chr3_1:59420856-59420875 | Msa0365370:CDS | 35.0% |
| TAGGCTTATCATCCAAAATC+GGG | - | chr3_1:59419592-59419611 | None:intergenic | 35.0% | |
| ATGATAAGCCTATCGATAAG+TGG | + | chr3_1:59419600-59419619 | Msa0365370:CDS | 35.0% | |
| TGAAAGAGGAACTGAAAAGA+AGG | + | chr3_1:59419636-59419655 | Msa0365370:CDS | 35.0% | |
| TACAATTCAAGCTTCTGAAC+AGG | + | chr3_1:59419883-59419902 | Msa0365370:CDS | 35.0% | |
| ACAATTCAAGCTTCTGAACA+GGG | + | chr3_1:59419884-59419903 | Msa0365370:CDS | 35.0% | |
| GCTACATTATCCGTATCAAA+TGG | - | chr3_1:59419929-59419948 | None:intergenic | 35.0% | |
| ATTAAGAATGTTGACCAGGA+TGG | + | chr3_1:59419980-59419999 | Msa0365370:CDS | 35.0% | |
| CACTATTATTAGCGTCAACT+GGG | - | chr3_1:59420015-59420034 | None:intergenic | 35.0% | |
| ACACTATTATTAGCGTCAAC+TGG | - | chr3_1:59420016-59420035 | None:intergenic | 35.0% | |
| TGTCATAGTGCCATGTATTA+TGG | - | chr3_1:59420450-59420469 | None:intergenic | 35.0% | |
| GAATTTATAGGGGTTGGAAT+TGG | - | chr3_1:59420613-59420632 | None:intergenic | 35.0% | |
| AAGATGGAATTTATAGGGGT+TGG | - | chr3_1:59420619-59420638 | None:intergenic | 35.0% | |
| ACCCCTATAAATTCCATCTT+TGG | + | chr3_1:59420619-59420638 | Msa0365370:intron | 35.0% | |
| CCCAAAGATGGAATTTATAG+GGG | - | chr3_1:59420623-59420642 | None:intergenic | 35.0% | |
| CCCCTATAAATTCCATCTTT+GGG | + | chr3_1:59420620-59420639 | Msa0365370:intron | 35.0% | |
| GAAGAGGAAAGAGTAAGAAA+GGG | + | chr3_1:59420818-59420837 | Msa0365370:CDS | 35.0% | |
| ! | TGATCAAAATAGAAAGGTGC+AGG | + | chr3_1:59420856-59420875 | Msa0365370:CDS | 35.0% |
| TAAGCCTATCGATAAGTGGA+AGG | + | chr3_1:59419604-59419623 | Msa0365370:CDS | 40.0% | |
| GTAACCTTCCACTTATCGAT+AGG | - | chr3_1:59419611-59419630 | None:intergenic | 40.0% | |
| GGAACTGAAAAGAAGGAAGT+TGG | + | chr3_1:59419643-59419662 | Msa0365370:CDS | 40.0% | |
| TCGAAGAAGGATGAGGTTAA+CGG | + | chr3_1:59419803-59419822 | Msa0365370:CDS | 40.0% | |
| AGCGTCCACATTAATAGTCT+TGG | - | chr3_1:59419861-59419880 | None:intergenic | 40.0% | |
| AAGACTATTAATGTGGACGC+TGG | + | chr3_1:59419860-59419879 | Msa0365370:CDS | 40.0% | |
| CAATTCAAGCTTCTGAACAG+GGG | + | chr3_1:59419885-59419904 | Msa0365370:CDS | 40.0% | |
| TGATACGGATAATGTAGCGA+AGG | + | chr3_1:59419931-59419950 | Msa0365370:CDS | 40.0% | |
| !!! | CCAGAGGTTTTGGATAATGA+CGG | + | chr3_1:59419956-59419975 | Msa0365370:CDS | 40.0% |
| CGGTATTAAGAATGTTGACC+AGG | + | chr3_1:59419976-59419995 | Msa0365370:CDS | 40.0% | |
| TAATGTGGAGACCACTGTTA+CGG | + | chr3_1:59420108-59420127 | Msa0365370:CDS | 40.0% | |
| !! | TGTGGTTTTGCTTTACGCAT+TGG | - | chr3_1:59420513-59420532 | None:intergenic | 40.0% |
| GGTAGATAGTGATCAGTATG+TGG | - | chr3_1:59420584-59420603 | None:intergenic | 40.0% | |
| TTTATAGGGGTTGGAATTGG+AGG | - | chr3_1:59420610-59420629 | None:intergenic | 40.0% | |
| CAAACTAGTGTTCCCAAAGA+TGG | - | chr3_1:59420635-59420654 | None:intergenic | 40.0% | |
| ! | CATCTTTGGGAACACTAGTT+TGG | + | chr3_1:59420633-59420652 | Msa0365370:intron | 40.0% |
| GGAAGAGGAAAGAGTAAGAA+AGG | + | chr3_1:59420817-59420836 | Msa0365370:CDS | 40.0% | |
| TAAGCCTATCGATAAGTGGA+AGG | + | chr3_1:59419604-59419623 | Msa0365370:CDS | 40.0% | |
| GTAACCTTCCACTTATCGAT+AGG | - | chr3_1:59419611-59419630 | None:intergenic | 40.0% | |
| GGAACTGAAAAGAAGGAAGT+TGG | + | chr3_1:59419643-59419662 | Msa0365370:CDS | 40.0% | |
| TCGAAGAAGGATGAGGTTAA+CGG | + | chr3_1:59419803-59419822 | Msa0365370:CDS | 40.0% | |
| AGCGTCCACATTAATAGTCT+TGG | - | chr3_1:59419861-59419880 | None:intergenic | 40.0% | |
| AAGACTATTAATGTGGACGC+TGG | + | chr3_1:59419860-59419879 | Msa0365370:CDS | 40.0% | |
| CAATTCAAGCTTCTGAACAG+GGG | + | chr3_1:59419885-59419904 | Msa0365370:CDS | 40.0% | |
| TGATACGGATAATGTAGCGA+AGG | + | chr3_1:59419931-59419950 | Msa0365370:CDS | 40.0% | |
| !!! | CCAGAGGTTTTGGATAATGA+CGG | + | chr3_1:59419956-59419975 | Msa0365370:CDS | 40.0% |
| CGGTATTAAGAATGTTGACC+AGG | + | chr3_1:59419976-59419995 | Msa0365370:CDS | 40.0% | |
| TAATGTGGAGACCACTGTTA+CGG | + | chr3_1:59420108-59420127 | Msa0365370:CDS | 40.0% | |
| !! | TGTGGTTTTGCTTTACGCAT+TGG | - | chr3_1:59420513-59420532 | None:intergenic | 40.0% |
| GGTAGATAGTGATCAGTATG+TGG | - | chr3_1:59420584-59420603 | None:intergenic | 40.0% | |
| TTTATAGGGGTTGGAATTGG+AGG | - | chr3_1:59420610-59420629 | None:intergenic | 40.0% | |
| CAAACTAGTGTTCCCAAAGA+TGG | - | chr3_1:59420635-59420654 | None:intergenic | 40.0% | |
| ! | CATCTTTGGGAACACTAGTT+TGG | + | chr3_1:59420633-59420652 | Msa0365370:intron | 40.0% |
| GGAAGAGGAAAGAGTAAGAA+AGG | + | chr3_1:59420817-59420836 | Msa0365370:CDS | 40.0% | |
| GAAGGTTACAGAGCTGAAAG+AGG | + | chr3_1:59419622-59419641 | Msa0365370:CDS | 45.0% | |
| AGAAGGAAGTTGGCTACCAA+AGG | + | chr3_1:59419653-59419672 | Msa0365370:CDS | 45.0% | |
| GTTGGCTACCAAAGGTTTGA+AGG | + | chr3_1:59419661-59419680 | Msa0365370:CDS | 45.0% | |
| GAAGGATGAGGTTAACGGTT+TGG | + | chr3_1:59419808-59419827 | Msa0365370:CDS | 45.0% | |
| TAATGTAGCGAAGGTTCCAG+AGG | + | chr3_1:59419940-59419959 | Msa0365370:CDS | 45.0% | |
| CCGTCATTATCCAAAACCTC+TGG | - | chr3_1:59419959-59419978 | None:intergenic | 45.0% | |
| GTGTCAGCAATGGATCTAGA+AGG | + | chr3_1:59420034-59420053 | Msa0365370:CDS | 45.0% | |
| GGATCTAGAAGGTGAACATG+TGG | + | chr3_1:59420045-59420064 | Msa0365370:CDS | 45.0% | |
| ACATGTGGAATCTGCTAACG+CGG | + | chr3_1:59420060-59420079 | Msa0365370:CDS | 45.0% | |
| TGTTGCCCATCCTTCTAATG+TGG | + | chr3_1:59420093-59420112 | Msa0365370:CDS | 45.0% | |
| GGTCTCCACATTAGAAGGAT+GGG | - | chr3_1:59420101-59420120 | None:intergenic | 45.0% | |
| TGGTCTCCACATTAGAAGGA+TGG | - | chr3_1:59420102-59420121 | None:intergenic | 45.0% | |
| ACAGTGGTCTCCACATTAGA+AGG | - | chr3_1:59420106-59420125 | None:intergenic | 45.0% | |
| ! | GGTTTAGAGCATAGAGGAAG+TGG | - | chr3_1:59420297-59420316 | None:intergenic | 45.0% |
| TGTTATGCAGAAGAGGCTGA+AGG | + | chr3_1:59420778-59420797 | Msa0365370:intron | 45.0% | |
| GGAAAGAGTAAGAAAGGGAG+TGG | + | chr3_1:59420823-59420842 | Msa0365370:CDS | 45.0% | |
| GTAAGAAAGGGAGTGGTAAG+TGG | + | chr3_1:59420830-59420849 | Msa0365370:CDS | 45.0% | |
| GGTAAGAATAAGGTGCATCC+AGG | + | chr3_1:59420902-59420921 | Msa0365370:CDS | 45.0% | |
| GAAGGTTACAGAGCTGAAAG+AGG | + | chr3_1:59419622-59419641 | Msa0365370:CDS | 45.0% | |
| AGAAGGAAGTTGGCTACCAA+AGG | + | chr3_1:59419653-59419672 | Msa0365370:CDS | 45.0% | |
| GTTGGCTACCAAAGGTTTGA+AGG | + | chr3_1:59419661-59419680 | Msa0365370:CDS | 45.0% | |
| GAAGGATGAGGTTAACGGTT+TGG | + | chr3_1:59419808-59419827 | Msa0365370:CDS | 45.0% | |
| TAATGTAGCGAAGGTTCCAG+AGG | + | chr3_1:59419940-59419959 | Msa0365370:CDS | 45.0% | |
| CCGTCATTATCCAAAACCTC+TGG | - | chr3_1:59419959-59419978 | None:intergenic | 45.0% | |
| GTGTCAGCAATGGATCTAGA+AGG | + | chr3_1:59420034-59420053 | Msa0365370:CDS | 45.0% | |
| GGATCTAGAAGGTGAACATG+TGG | + | chr3_1:59420045-59420064 | Msa0365370:CDS | 45.0% | |
| ACATGTGGAATCTGCTAACG+CGG | + | chr3_1:59420060-59420079 | Msa0365370:CDS | 45.0% | |
| TGTTGCCCATCCTTCTAATG+TGG | + | chr3_1:59420093-59420112 | Msa0365370:CDS | 45.0% | |
| GGTCTCCACATTAGAAGGAT+GGG | - | chr3_1:59420101-59420120 | None:intergenic | 45.0% | |
| TGGTCTCCACATTAGAAGGA+TGG | - | chr3_1:59420102-59420121 | None:intergenic | 45.0% | |
| ACAGTGGTCTCCACATTAGA+AGG | - | chr3_1:59420106-59420125 | None:intergenic | 45.0% | |
| ! | GGTTTAGAGCATAGAGGAAG+TGG | - | chr3_1:59420297-59420316 | None:intergenic | 45.0% |
| TGTTATGCAGAAGAGGCTGA+AGG | + | chr3_1:59420778-59420797 | Msa0365370:intron | 45.0% | |
| GGAAAGAGTAAGAAAGGGAG+TGG | + | chr3_1:59420823-59420842 | Msa0365370:CDS | 45.0% | |
| GTAAGAAAGGGAGTGGTAAG+TGG | + | chr3_1:59420830-59420849 | Msa0365370:CDS | 45.0% | |
| GGTAAGAATAAGGTGCATCC+AGG | + | chr3_1:59420902-59420921 | Msa0365370:CDS | 45.0% | |
| !! | TATATATATATACATTAATA+TGG | - | chr3_1:59420325-59420344 | None:intergenic | 5.0% |
| !! | TATATATATATACATTAATA+TGG | - | chr3_1:59420325-59420344 | None:intergenic | 5.0% |
| ! | AGCCTCCTGTTCCTTTTTGC+GGG | - | chr3_1:59419747-59419766 | None:intergenic | 50.0% |
| ! | CAGCCTCCTGTTCCTTTTTG+CGG | - | chr3_1:59419748-59419767 | None:intergenic | 50.0% |
| CTCATCCTTCTTCGAACCCT+CGG | - | chr3_1:59419798-59419817 | None:intergenic | 50.0% | |
| GCTTCTGAACAGGGGAATAG+TGG | + | chr3_1:59419893-59419912 | Msa0365370:CDS | 50.0% | |
| ! | AGCGAAGGTTCCAGAGGTTT+TGG | + | chr3_1:59419946-59419965 | Msa0365370:CDS | 50.0% |
| CATGTGGAATCTGCTAACGC+GGG | + | chr3_1:59420061-59420080 | Msa0365370:CDS | 50.0% | |
| AGTCTCGGTTACCGTAACAG+TGG | - | chr3_1:59420122-59420141 | None:intergenic | 50.0% | |
| TGTTACGGTAACCGAGACTG+TGG | + | chr3_1:59420123-59420142 | Msa0365370:CDS | 50.0% | |
| ! | GTGGTCGGTTTAGAGCATAG+AGG | - | chr3_1:59420303-59420322 | None:intergenic | 50.0% |
| AGGGGTTGGAATTGGAGGTA+TGG | - | chr3_1:59420605-59420624 | None:intergenic | 50.0% | |
| ! | AGCCTCCTGTTCCTTTTTGC+GGG | - | chr3_1:59419747-59419766 | None:intergenic | 50.0% |
| ! | CAGCCTCCTGTTCCTTTTTG+CGG | - | chr3_1:59419748-59419767 | None:intergenic | 50.0% |
| CTCATCCTTCTTCGAACCCT+CGG | - | chr3_1:59419798-59419817 | None:intergenic | 50.0% | |
| GCTTCTGAACAGGGGAATAG+TGG | + | chr3_1:59419893-59419912 | Msa0365370:CDS | 50.0% | |
| ! | AGCGAAGGTTCCAGAGGTTT+TGG | + | chr3_1:59419946-59419965 | Msa0365370:CDS | 50.0% |
| CATGTGGAATCTGCTAACGC+GGG | + | chr3_1:59420061-59420080 | Msa0365370:CDS | 50.0% | |
| AGTCTCGGTTACCGTAACAG+TGG | - | chr3_1:59420122-59420141 | None:intergenic | 50.0% | |
| TGTTACGGTAACCGAGACTG+TGG | + | chr3_1:59420123-59420142 | Msa0365370:CDS | 50.0% | |
| ! | GTGGTCGGTTTAGAGCATAG+AGG | - | chr3_1:59420303-59420322 | None:intergenic | 50.0% |
| AGGGGTTGGAATTGGAGGTA+TGG | - | chr3_1:59420605-59420624 | None:intergenic | 50.0% | |
| TTTGGATGAAGCCCTTCGCG+AGG | + | chr3_1:59419700-59419719 | Msa0365370:CDS | 55.0% | |
| ATGAAGCCCTTCGCGAGGAA+AGG | + | chr3_1:59419705-59419724 | Msa0365370:CDS | 55.0% | |
| TGAAGCCCTTCGCGAGGAAA+GGG | + | chr3_1:59419706-59419725 | Msa0365370:CDS | 55.0% | |
| TGCCCGCAAAAAGGAACAGG+AGG | + | chr3_1:59419742-59419761 | Msa0365370:CDS | 55.0% | |
| AAAGGAACAGGAGGCTGCTG+AGG | + | chr3_1:59419751-59419770 | Msa0365370:CDS | 55.0% | |
| CGAGGGTTCGAAGAAGGATG+AGG | + | chr3_1:59419796-59419815 | Msa0365370:CDS | 55.0% | |
| AGTCTCGGTGACCACAGTCT+CGG | - | chr3_1:59420137-59420156 | None:intergenic | 55.0% | |
| GCTGAATTGGGTGCAACTCC+TGG | - | chr3_1:59420923-59420942 | None:intergenic | 55.0% | |
| TTTGGATGAAGCCCTTCGCG+AGG | + | chr3_1:59419700-59419719 | Msa0365370:CDS | 55.0% | |
| ATGAAGCCCTTCGCGAGGAA+AGG | + | chr3_1:59419705-59419724 | Msa0365370:CDS | 55.0% | |
| TGAAGCCCTTCGCGAGGAAA+GGG | + | chr3_1:59419706-59419725 | Msa0365370:CDS | 55.0% | |
| TGCCCGCAAAAAGGAACAGG+AGG | + | chr3_1:59419742-59419761 | Msa0365370:CDS | 55.0% | |
| AAAGGAACAGGAGGCTGCTG+AGG | + | chr3_1:59419751-59419770 | Msa0365370:CDS | 55.0% | |
| CGAGGGTTCGAAGAAGGATG+AGG | + | chr3_1:59419796-59419815 | Msa0365370:CDS | 55.0% | |
| AGTCTCGGTGACCACAGTCT+CGG | - | chr3_1:59420137-59420156 | None:intergenic | 55.0% | |
| GCTGAATTGGGTGCAACTCC+TGG | - | chr3_1:59420923-59420942 | None:intergenic | 55.0% | |
| AGCCTCCCTTTCCTCGCGAA+GGG | - | chr3_1:59419714-59419733 | None:intergenic | 60.0% | |
| TGCTGAGGCTGCCCGCAAAA+AGG | + | chr3_1:59419733-59419752 | Msa0365370:CDS | 60.0% | |
| GGCTGCCCGCAAAAAGGAAC+AGG | + | chr3_1:59419739-59419758 | Msa0365370:CDS | 60.0% | |
| CTGGGTCAGTGACACCATCC+TGG | - | chr3_1:59419997-59420016 | None:intergenic | 60.0% | |
| GGAATCTGCTAACGCGGGAG+AGG | + | chr3_1:59420066-59420085 | Msa0365370:CDS | 60.0% | |
| ATCTGCTAACGCGGGAGAGG+AGG | + | chr3_1:59420069-59420088 | Msa0365370:CDS | 60.0% | |
| AGCCTCCCTTTCCTCGCGAA+GGG | - | chr3_1:59419714-59419733 | None:intergenic | 60.0% | |
| TGCTGAGGCTGCCCGCAAAA+AGG | + | chr3_1:59419733-59419752 | Msa0365370:CDS | 60.0% | |
| GGCTGCCCGCAAAAAGGAAC+AGG | + | chr3_1:59419739-59419758 | Msa0365370:CDS | 60.0% | |
| CTGGGTCAGTGACACCATCC+TGG | - | chr3_1:59419997-59420016 | None:intergenic | 60.0% | |
| GGAATCTGCTAACGCGGGAG+AGG | + | chr3_1:59420066-59420085 | Msa0365370:CDS | 60.0% | |
| ATCTGCTAACGCGGGAGAGG+AGG | + | chr3_1:59420069-59420088 | Msa0365370:CDS | 60.0% | |
| AGCCCTTCGCGAGGAAAGGG+AGG | + | chr3_1:59419709-59419728 | Msa0365370:CDS | 65.0% | |
| CAGCCTCCCTTTCCTCGCGA+AGG | - | chr3_1:59419715-59419734 | None:intergenic | 65.0% | |
| CGAGGAAAGGGAGGCTGCTG+AGG | + | chr3_1:59419718-59419737 | Msa0365370:CDS | 65.0% | |
| TGCTGAGGCTTCCCCCGAAC+AGG | + | chr3_1:59419766-59419785 | Msa0365370:CDS | 65.0% | |
| TGAGGCTTCCCCCGAACAGG+AGG | + | chr3_1:59419769-59419788 | Msa0365370:CDS | 65.0% | |
| ACCCTCGGCAGCCTCCTGTT+CGG | - | chr3_1:59419783-59419802 | None:intergenic | 65.0% | |
| GGCTGCCGAGGGTTCGAAGA+AGG | + | chr3_1:59419790-59419809 | Msa0365370:CDS | 65.0% | |
| AGCCCTTCGCGAGGAAAGGG+AGG | + | chr3_1:59419709-59419728 | Msa0365370:CDS | 65.0% | |
| CAGCCTCCCTTTCCTCGCGA+AGG | - | chr3_1:59419715-59419734 | None:intergenic | 65.0% | |
| CGAGGAAAGGGAGGCTGCTG+AGG | + | chr3_1:59419718-59419737 | Msa0365370:CDS | 65.0% | |
| TGCTGAGGCTTCCCCCGAAC+AGG | + | chr3_1:59419766-59419785 | Msa0365370:CDS | 65.0% | |
| TGAGGCTTCCCCCGAACAGG+AGG | + | chr3_1:59419769-59419788 | Msa0365370:CDS | 65.0% | |
| ACCCTCGGCAGCCTCCTGTT+CGG | - | chr3_1:59419783-59419802 | None:intergenic | 65.0% | |
| GGCTGCCGAGGGTTCGAAGA+AGG | + | chr3_1:59419790-59419809 | Msa0365370:CDS | 65.0% | |
| CTCGGCAGCCTCCTGTTCGG+GGG | - | chr3_1:59419780-59419799 | None:intergenic | 70.0% | |
| CCTCGGCAGCCTCCTGTTCG+GGG | - | chr3_1:59419781-59419800 | None:intergenic | 70.0% | |
| CCCTCGGCAGCCTCCTGTTC+GGG | - | chr3_1:59419782-59419801 | None:intergenic | 70.0% | |
| CCCGAACAGGAGGCTGCCGA+GGG | + | chr3_1:59419779-59419798 | Msa0365370:CDS | 70.0% | |
| CTCGGCAGCCTCCTGTTCGG+GGG | - | chr3_1:59419780-59419799 | None:intergenic | 70.0% | |
| CCTCGGCAGCCTCCTGTTCG+GGG | - | chr3_1:59419781-59419800 | None:intergenic | 70.0% | |
| CCCTCGGCAGCCTCCTGTTC+GGG | - | chr3_1:59419782-59419801 | None:intergenic | 70.0% | |
| CCCGAACAGGAGGCTGCCGA+GGG | + | chr3_1:59419779-59419798 | Msa0365370:CDS | 70.0% | |
| CCCCGAACAGGAGGCTGCCG+AGG | + | chr3_1:59419778-59419797 | Msa0365370:CDS | 75.0% | |
| CCCCGAACAGGAGGCTGCCG+AGG | + | chr3_1:59419778-59419797 | Msa0365370:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 59419569 | 59420946 | 59419569 | ID=Msa0365370;Name=Msa0365370 |
| chr3_1 | mRNA | 59419569 | 59420946 | 59419569 | ID=Msa0365370-mRNA-1;Parent=Msa0365370;Name=Msa0365370-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|248 |
| chr3_1 | exon | 59419569 | 59420156 | 59419569 | ID=Msa0365370-mRNA-1:exon:11345;Parent=Msa0365370-mRNA-1 |
| chr3_1 | exon | 59420788 | 59420946 | 59420788 | ID=Msa0365370-mRNA-1:exon:11346;Parent=Msa0365370-mRNA-1 |
| chr3_1 | CDS | 59419569 | 59420156 | 59419569 | ID=Msa0365370-mRNA-1:cds;Parent=Msa0365370-mRNA-1 |
| chr3_1 | CDS | 59420788 | 59420946 | 59420788 | ID=Msa0365370-mRNA-1:cds;Parent=Msa0365370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
