Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429020 | XP_013461687.1 | 99.115 | 113 | 1 | 0 | 1 | 113 | 21 | 133 | 1.97e-76 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429020 | sp|Q8VXX9|BETL1_ARATH | 66.667 | 114 | 36 | 2 | 1 | 113 | 25 | 137 | 4.04e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429020 | A0A072V1K5 | 99.115 | 113 | 1 | 0 | 1 | 113 | 21 | 133 | 9.42e-77 | 232 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0429020 | 0.802525 | 5.383169e-49 | -8.615850e-47 |
| Msa0026910 | Msa0429020 | 0.805456 | 1.323450e-49 | -8.615850e-47 |
| Msa0043980 | Msa0429020 | 0.825987 | 3.473962e-54 | -8.615850e-47 |
| Msa0045790 | Msa0429020 | 0.800419 | 1.454002e-48 | -8.615850e-47 |
| Msa0052800 | Msa0429020 | 0.802120 | 6.523477e-49 | -8.615850e-47 |
| Msa0081650 | Msa0429020 | 0.800279 | 1.552494e-48 | -8.615850e-47 |
| Msa0085370 | Msa0429020 | 0.800913 | 1.153078e-48 | -8.615850e-47 |
| Msa0090550 | Msa0429020 | 0.800361 | 1.494046e-48 | -8.615850e-47 |
| Msa0131330 | Msa0429020 | 0.801071 | 1.070173e-48 | -8.615850e-47 |
| Msa0138020 | Msa0429020 | 0.819834 | 9.431310e-53 | -8.615850e-47 |
| Msa0167980 | Msa0429020 | 0.800629 | 1.317336e-48 | -8.615850e-47 |
| Msa0178510 | Msa0429020 | 0.802057 | 6.719020e-49 | -8.615850e-47 |
| Msa0217680 | Msa0429020 | 0.805938 | 1.048150e-49 | -8.615850e-47 |
| Msa0376910 | Msa0429020 | 0.809212 | 2.115106e-50 | -8.615850e-47 |
| Msa0379570 | Msa0429020 | 0.833038 | 6.706641e-56 | -8.615850e-47 |
| Msa0385490 | Msa0429020 | 0.800156 | 1.644911e-48 | -8.615850e-47 |
| Msa0417330 | Msa0429020 | 0.802070 | 6.678038e-49 | -8.615850e-47 |
| Msa0429020 | Msa0452710 | 0.801642 | 8.176954e-49 | -8.615850e-47 |
| Msa0429020 | Msa0453690 | 0.826154 | 3.169592e-54 | -8.615850e-47 |
| Msa0429020 | Msa0464100 | 0.802360 | 5.821512e-49 | -8.615850e-47 |
| Msa0429020 | Msa0468320 | 0.817386 | 3.388409e-52 | -8.615850e-47 |
| Msa0429020 | Msa0471900 | 0.817029 | 4.076278e-52 | -8.615850e-47 |
| Msa0429020 | Msa0476460 | 0.818715 | 1.696113e-52 | -8.615850e-47 |
| Msa0429020 | Msa0484780 | 0.809180 | 2.149787e-50 | -8.615850e-47 |
| Msa0429020 | Msa0518380 | 0.823470 | 1.361336e-53 | -8.615850e-47 |
| Msa0429020 | Msa0518440 | 0.812076 | 5.086322e-51 | -8.615850e-47 |
| Msa0429020 | Msa0532980 | 0.820957 | 5.210574e-53 | -8.615850e-47 |
| Msa0429020 | Msa0574390 | 0.801551 | 8.534678e-49 | -8.615850e-47 |
| Msa0429020 | Msa0620960 | 0.805608 | 1.229800e-49 | -8.615850e-47 |
| Msa0429020 | Msa0667770 | 0.807613 | 4.639644e-50 | -8.615850e-47 |
| Msa0429020 | Msa0667790 | 0.805840 | 1.099192e-49 | -8.615850e-47 |
| Msa0429020 | Msa0704920 | 0.810964 | 8.872834e-51 | -8.615850e-47 |
| Msa0429020 | Msa0832150 | 0.802888 | 4.530801e-49 | -8.615850e-47 |
| Msa0429020 | Msa0857640 | 0.821491 | 3.925189e-53 | -8.615850e-47 |
| Msa0429020 | Msa0866410 | 0.805613 | 1.226929e-49 | -8.615850e-47 |
| Msa0429020 | Msa0960740 | 0.812003 | 5.276264e-51 | -8.615850e-47 |
| Msa0429020 | Msa0975940 | 0.800759 | 1.239456e-48 | -8.615850e-47 |
| Msa0429020 | Msa1032770 | 0.808880 | 2.491320e-50 | -8.615850e-47 |
| Msa0429020 | Msa1036610 | 0.806218 | 9.153159e-50 | -8.615850e-47 |
| Msa0429020 | Msa1082500 | 0.807866 | 4.099372e-50 | -8.615850e-47 |
| Msa0429020 | Msa1095650 | 0.833783 | 4.373226e-56 | -8.615850e-47 |
| Msa0429020 | Msa1104560 | 0.802044 | 6.762182e-49 | -8.615850e-47 |
| Msa0429020 | Msa1173170 | 0.811062 | 8.448981e-51 | -8.615850e-47 |
| Msa0429020 | Msa1204530 | 0.804419 | 2.179677e-49 | -8.615850e-47 |
| Msa0429020 | Msa1206310 | 0.810585 | 1.071159e-50 | -8.615850e-47 |
| Msa0429020 | Msa1206360 | 0.812621 | 3.866373e-51 | -8.615850e-47 |
| Msa0429020 | Msa1305340 | 0.803725 | 3.040124e-49 | -8.615850e-47 |
| Msa0429020 | Msa1331000 | 0.804710 | 1.895415e-49 | -8.615850e-47 |
| Msa0429020 | Msa1353980 | 0.801165 | 1.024162e-48 | -8.615850e-47 |
| Msa0429020 | Msa1389880 | 0.800865 | 1.179321e-48 | -8.615850e-47 |
| Msa0429020 | Msa1403890 | 0.803600 | 3.226219e-49 | -8.615850e-47 |
| Msa0429020 | Msa1425260 | 0.800024 | 1.749964e-48 | -8.615850e-47 |
| Msa0429020 | Msa1436480 | 0.802147 | 6.439440e-49 | -8.615850e-47 |
| Msa0429020 | Msa1462290 | 0.801551 | 8.534678e-49 | -8.615850e-47 |
| Msa0429020 | Msa1462930 | 0.803437 | 3.487955e-49 | -8.615850e-47 |
| Msa0257500 | Msa0429020 | 0.805054 | 1.606388e-49 | -8.615850e-47 |
| Msa0291500 | Msa0429020 | 0.811641 | 6.326202e-51 | -8.615850e-47 |
| Msa0326520 | Msa0429020 | 0.802816 | 4.688572e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429020 | MtrunA17_Chr3g0132601 | 99.115 | 113 | 1 | 0 | 1 | 113 | 21 | 133 | 1.81e-80 | 232 |
| Msa0429020 | MtrunA17_Chr5g0427101 | 77.876 | 113 | 23 | 2 | 1 | 113 | 22 | 132 | 7.99e-62 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429020 | AT4G14600.1 | 66.667 | 114 | 36 | 2 | 1 | 113 | 25 | 137 | 4.11e-53 | 163 |
| Msa0429020 | AT1G29060.1 | 65.789 | 114 | 37 | 2 | 1 | 113 | 22 | 134 | 7.00e-46 | 145 |
| Msa0429020 | AT1G29060.2 | 65.556 | 90 | 31 | 0 | 24 | 113 | 4 | 93 | 6.25e-37 | 120 |
Find 22 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGAAAGCCTCACTTTC+TGG | 0.084284 | 3_2:-80185853 | None:intergenic |
| GTTTCACTATTGTGTATCTT+TGG | 0.334276 | 3_2:+80185820 | Msa0429020:CDS |
| GGAGGACGCAGCAGGAGTTC+TGG | 0.386145 | 3_2:-80183992 | None:intergenic |
| AAAGGACCACGTGAACAATA+TGG | 0.426700 | 3_2:-80185785 | None:intergenic |
| CTGCAGGTTGCTGAAGAGAT+AGG | 0.445511 | 3_2:+80184693 | Msa0429020:intron |
| ACAGTGGCAAAGGCTCAAGC+TGG | 0.467813 | 3_2:+80185708 | Msa0429020:CDS |
| GATGAAATTACCGGTCTTCG+TGG | 0.475096 | 3_2:+80184057 | Msa0429020:CDS |
| GATTTCGATGATGAAATTAC+CGG | 0.478157 | 3_2:+80184048 | Msa0429020:CDS |
| ATAATCTAAGAAGATTGAAC+AGG | 0.480667 | 3_2:+80185739 | Msa0429020:CDS |
| AACAGGAGTATCGTGCGAAA+TGG | 0.487568 | 3_2:+80185756 | Msa0429020:CDS |
| TCGAACTTGACCACGAAGAC+CGG | 0.491165 | 3_2:-80184067 | None:intergenic |
| TCATCATCGAAATCACCAAC+AGG | 0.498984 | 3_2:-80184039 | None:intergenic |
| AATACGCAATTGAATTTCAT+CGG | 0.502875 | 3_2:-80184013 | None:intergenic |
| ATTTCATCGGAGGACGCAGC+AGG | 0.517383 | 3_2:-80184000 | None:intergenic |
| TGAAACATATTAATGCGAAA+AGG | 0.525274 | 3_2:-80185803 | None:intergenic |
| CAGTGGCAAAGGCTCAAGCT+GGG | 0.533913 | 3_2:+80185709 | Msa0429020:CDS |
| GCAGCAAATGACAGTGGCAA+AGG | 0.571535 | 3_2:+80185698 | Msa0429020:intron |
| CAATTGCGTATTGATCCTGT+TGG | 0.644327 | 3_2:+80184024 | Msa0429020:CDS |
| AGTGGCAAAGGCTCAAGCTG+GGG | 0.653066 | 3_2:+80185710 | Msa0429020:CDS |
| TTCAAACCATATTGTTCACG+TGG | 0.657520 | 3_2:+80185779 | Msa0429020:CDS |
| ACGCAATTGAATTTCATCGG+AGG | 0.692132 | 3_2:-80184010 | None:intergenic |
| TTTAATGCAGCAAATGACAG+TGG | 0.697287 | 3_2:+80185692 | Msa0429020:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTATCATGATTTTT+AGG | + | chr3_2:80184154-80184173 | Msa0429020:intron | 10.0% |
| !! | AGAAAAAAAAAAAAAAAAAG+AGG | + | chr3_2:80184224-80184243 | Msa0429020:intron | 10.0% |
| !! | GAAAAAAAAAAAAAAAAAGA+GGG | + | chr3_2:80184225-80184244 | Msa0429020:intron | 10.0% |
| !! | AATAAAACTTGAAATTATAA+TGG | + | chr3_2:80185010-80185029 | Msa0429020:intron | 10.0% |
| !! | ATAAAACTTGAAATTATAAT+GGG | + | chr3_2:80185011-80185030 | Msa0429020:intron | 10.0% |
| !!! | AAAATATTTCTTTTGTAAAA+TGG | - | chr3_2:80185101-80185120 | None:intergenic | 10.0% |
| !!! | TTTAAATTATCATGATTTTT+AGG | + | chr3_2:80184154-80184173 | Msa0429020:intron | 10.0% |
| !! | AGAAAAAAAAAAAAAAAAAG+AGG | + | chr3_2:80184224-80184243 | Msa0429020:intron | 10.0% |
| !! | GAAAAAAAAAAAAAAAAAGA+GGG | + | chr3_2:80184225-80184244 | Msa0429020:intron | 10.0% |
| !! | AATAAAACTTGAAATTATAA+TGG | + | chr3_2:80185010-80185029 | Msa0429020:intron | 10.0% |
| !! | ATAAAACTTGAAATTATAAT+GGG | + | chr3_2:80185011-80185030 | Msa0429020:intron | 10.0% |
| !!! | AAAATATTTCTTTTGTAAAA+TGG | - | chr3_2:80185101-80185120 | None:intergenic | 10.0% |
| !!! | GATTTTCTGTTATTTAATTT+GGG | - | chr3_2:80184390-80184409 | None:intergenic | 15.0% |
| !!! | AACAAACATTTTTTTAATAC+TGG | - | chr3_2:80184412-80184431 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTATAAGTCAA+AGG | - | chr3_2:80185072-80185091 | None:intergenic | 15.0% |
| !!! | GATTTTCTGTTATTTAATTT+GGG | - | chr3_2:80184390-80184409 | None:intergenic | 15.0% |
| !!! | AACAAACATTTTTTTAATAC+TGG | - | chr3_2:80184412-80184431 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTATAAGTCAA+AGG | - | chr3_2:80185072-80185091 | None:intergenic | 15.0% |
| !!! | ACTTTTTTCATTAGTTTGAT+TGG | + | chr3_2:80184313-80184332 | Msa0429020:intron | 20.0% |
| !!! | GGATTTTCTGTTATTTAATT+TGG | - | chr3_2:80184391-80184410 | None:intergenic | 20.0% |
| !! | AAAAATCTTTGAACCTAATA+TGG | - | chr3_2:80184618-80184637 | None:intergenic | 20.0% |
| !! | TTATCCAATAAATGATGTAT+CGG | - | chr3_2:80184783-80184802 | None:intergenic | 20.0% |
| !!! | TTACTTTAGGATTATTATCT+TGG | + | chr3_2:80185425-80185444 | Msa0429020:intron | 20.0% |
| !! | TGGATTATAACATTAATCTA+TGG | + | chr3_2:80185445-80185464 | Msa0429020:intron | 20.0% |
| !!! | AAAACAAAGTATTAAGAAGA+CGG | - | chr3_2:80185665-80185684 | None:intergenic | 20.0% |
| !!! | ACTTTTTTCATTAGTTTGAT+TGG | + | chr3_2:80184313-80184332 | Msa0429020:intron | 20.0% |
| !!! | GGATTTTCTGTTATTTAATT+TGG | - | chr3_2:80184391-80184410 | None:intergenic | 20.0% |
| !! | AAAAATCTTTGAACCTAATA+TGG | - | chr3_2:80184618-80184637 | None:intergenic | 20.0% |
| !! | TTATCCAATAAATGATGTAT+CGG | - | chr3_2:80184783-80184802 | None:intergenic | 20.0% |
| !!! | TTACTTTAGGATTATTATCT+TGG | + | chr3_2:80185425-80185444 | Msa0429020:intron | 20.0% |
| !! | TGGATTATAACATTAATCTA+TGG | + | chr3_2:80185445-80185464 | Msa0429020:intron | 20.0% |
| !!! | AAAACAAAGTATTAAGAAGA+CGG | - | chr3_2:80185665-80185684 | None:intergenic | 20.0% |
| ! | AATACGCAATTGAATTTCAT+CGG | - | chr3_2:80184016-80184035 | None:intergenic | 25.0% |
| ! | TTTATAGTGTGTGCATAAAT+GGG | - | chr3_2:80184122-80184141 | None:intergenic | 25.0% |
| !! | TTTTATAGTGTGTGCATAAA+TGG | - | chr3_2:80184123-80184142 | None:intergenic | 25.0% |
| ! | ATTCATAAACAAGCAAATAC+AGG | - | chr3_2:80184282-80184301 | None:intergenic | 25.0% |
| !!! | TTTTTCATTAGTTTGATTGG+TGG | + | chr3_2:80184316-80184335 | Msa0429020:intron | 25.0% |
| ! | TAGTTTGATGAAACCATATT+AGG | + | chr3_2:80184602-80184621 | Msa0429020:intron | 25.0% |
| ! | TCTCAATCAGTAACTTAATT+AGG | + | chr3_2:80184962-80184981 | Msa0429020:intron | 25.0% |
| ! | CTCAATCAGTAACTTAATTA+GGG | + | chr3_2:80184963-80184982 | Msa0429020:intron | 25.0% |
| ! | TAATAGTTTATGATCTCTAG+TGG | + | chr3_2:80185133-80185152 | Msa0429020:intron | 25.0% |
| ! | GAAGTGAAGTAATTTATGTT+TGG | - | chr3_2:80185304-80185323 | None:intergenic | 25.0% |
| ! | ATAATAATCCTAAAGTAACG+AGG | - | chr3_2:80185423-80185442 | None:intergenic | 25.0% |
| !! | AAACAAAGTATTAAGAAGAC+GGG | - | chr3_2:80185664-80185683 | None:intergenic | 25.0% |
| ! | ATAATCTAAGAAGATTGAAC+AGG | + | chr3_2:80185739-80185758 | Msa0429020:CDS | 25.0% |
| ! | TGAAACATATTAATGCGAAA+AGG | - | chr3_2:80185806-80185825 | None:intergenic | 25.0% |
| ! | AATACGCAATTGAATTTCAT+CGG | - | chr3_2:80184016-80184035 | None:intergenic | 25.0% |
| ! | TTTATAGTGTGTGCATAAAT+GGG | - | chr3_2:80184122-80184141 | None:intergenic | 25.0% |
| !! | TTTTATAGTGTGTGCATAAA+TGG | - | chr3_2:80184123-80184142 | None:intergenic | 25.0% |
| ! | ATTCATAAACAAGCAAATAC+AGG | - | chr3_2:80184282-80184301 | None:intergenic | 25.0% |
| !!! | TTTTTCATTAGTTTGATTGG+TGG | + | chr3_2:80184316-80184335 | Msa0429020:intron | 25.0% |
| ! | TAGTTTGATGAAACCATATT+AGG | + | chr3_2:80184602-80184621 | Msa0429020:intron | 25.0% |
| ! | TCTCAATCAGTAACTTAATT+AGG | + | chr3_2:80184962-80184981 | Msa0429020:intron | 25.0% |
| ! | CTCAATCAGTAACTTAATTA+GGG | + | chr3_2:80184963-80184982 | Msa0429020:intron | 25.0% |
| ! | TAATAGTTTATGATCTCTAG+TGG | + | chr3_2:80185133-80185152 | Msa0429020:intron | 25.0% |
| ! | GAAGTGAAGTAATTTATGTT+TGG | - | chr3_2:80185304-80185323 | None:intergenic | 25.0% |
| ! | ATAATAATCCTAAAGTAACG+AGG | - | chr3_2:80185423-80185442 | None:intergenic | 25.0% |
| !! | AAACAAAGTATTAAGAAGAC+GGG | - | chr3_2:80185664-80185683 | None:intergenic | 25.0% |
| ! | ATAATCTAAGAAGATTGAAC+AGG | + | chr3_2:80185739-80185758 | Msa0429020:CDS | 25.0% |
| ! | TGAAACATATTAATGCGAAA+AGG | - | chr3_2:80185806-80185825 | None:intergenic | 25.0% |
| GATTTCGATGATGAAATTAC+CGG | + | chr3_2:80184048-80184067 | Msa0429020:CDS | 30.0% | |
| TTATAGTGTGTGCATAAATG+GGG | - | chr3_2:80184121-80184140 | None:intergenic | 30.0% | |
| TACTAAGACTCTATTACACT+CGG | - | chr3_2:80184530-80184549 | None:intergenic | 30.0% | |
| AGAGAATCAAAAACGAAAAC+GGG | - | chr3_2:80184650-80184669 | None:intergenic | 30.0% | |
| CAGAGAATCAAAAACGAAAA+CGG | - | chr3_2:80184651-80184670 | None:intergenic | 30.0% | |
| ! | CAAGACTCAAAAAGATTTTC+TGG | + | chr3_2:80184725-80184744 | Msa0429020:CDS | 30.0% |
| CTGTATTCTACTCATACATT+GGG | + | chr3_2:80184804-80184823 | Msa0429020:intron | 30.0% | |
| ! | GAAAAGAGTACATGCATATA+TGG | + | chr3_2:80184837-80184856 | Msa0429020:intron | 30.0% |
| GTTACATGCTTTATGATATC+AGG | + | chr3_2:80184859-80184878 | Msa0429020:intron | 30.0% | |
| GCTTTATGATATCAGGAAAA+TGG | + | chr3_2:80184866-80184885 | Msa0429020:intron | 30.0% | |
| ! | GTCACTTTCTTATGATGTTT+AGG | + | chr3_2:80184985-80185004 | Msa0429020:intron | 30.0% |
| !! | TGGATTCAAGTTTTACATAG+AGG | - | chr3_2:80185160-80185179 | None:intergenic | 30.0% |
| ! | ATTGGTTCTTCCTTAACTTT+AGG | + | chr3_2:80185200-80185219 | Msa0429020:intron | 30.0% |
| ! | AATACAGAGGAAACATGTTT+TGG | + | chr3_2:80185555-80185574 | Msa0429020:intron | 30.0% |
| GTTTCACTATTGTGTATCTT+TGG | + | chr3_2:80185820-80185839 | Msa0429020:CDS | 30.0% | |
| GATTTCGATGATGAAATTAC+CGG | + | chr3_2:80184048-80184067 | Msa0429020:CDS | 30.0% | |
| TTATAGTGTGTGCATAAATG+GGG | - | chr3_2:80184121-80184140 | None:intergenic | 30.0% | |
| TACTAAGACTCTATTACACT+CGG | - | chr3_2:80184530-80184549 | None:intergenic | 30.0% | |
| AGAGAATCAAAAACGAAAAC+GGG | - | chr3_2:80184650-80184669 | None:intergenic | 30.0% | |
| CAGAGAATCAAAAACGAAAA+CGG | - | chr3_2:80184651-80184670 | None:intergenic | 30.0% | |
| ! | CAAGACTCAAAAAGATTTTC+TGG | + | chr3_2:80184725-80184744 | Msa0429020:CDS | 30.0% |
| CTGTATTCTACTCATACATT+GGG | + | chr3_2:80184804-80184823 | Msa0429020:intron | 30.0% | |
| ! | GAAAAGAGTACATGCATATA+TGG | + | chr3_2:80184837-80184856 | Msa0429020:intron | 30.0% |
| GTTACATGCTTTATGATATC+AGG | + | chr3_2:80184859-80184878 | Msa0429020:intron | 30.0% | |
| GCTTTATGATATCAGGAAAA+TGG | + | chr3_2:80184866-80184885 | Msa0429020:intron | 30.0% | |
| ! | GTCACTTTCTTATGATGTTT+AGG | + | chr3_2:80184985-80185004 | Msa0429020:intron | 30.0% |
| !! | TGGATTCAAGTTTTACATAG+AGG | - | chr3_2:80185160-80185179 | None:intergenic | 30.0% |
| ! | ATTGGTTCTTCCTTAACTTT+AGG | + | chr3_2:80185200-80185219 | Msa0429020:intron | 30.0% |
| ! | AATACAGAGGAAACATGTTT+TGG | + | chr3_2:80185555-80185574 | Msa0429020:intron | 30.0% |
| GTTTCACTATTGTGTATCTT+TGG | + | chr3_2:80185820-80185839 | Msa0429020:CDS | 30.0% | |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr3_2:80184328-80184347 | Msa0429020:intron | 35.0% |
| AATCAAAAACGAAAACGGGA+AGG | - | chr3_2:80184646-80184665 | None:intergenic | 35.0% | |
| !!! | AAAAGATTTTCTGGAACAGC+TGG | + | chr3_2:80184734-80184753 | Msa0429020:CDS | 35.0% |
| TCAGCCGATACATCATTTAT+TGG | + | chr3_2:80184776-80184795 | Msa0429020:intron | 35.0% | |
| CCAATGTATGAGTAGAATAC+AGG | - | chr3_2:80184806-80184825 | None:intergenic | 35.0% | |
| CCTGTATTCTACTCATACAT+TGG | + | chr3_2:80184803-80184822 | Msa0429020:intron | 35.0% | |
| ! | TATGCATGTACTCTTTTCTC+AGG | - | chr3_2:80184835-80184854 | None:intergenic | 35.0% |
| !! | TGAAGTTCTGAACCATCTAT+TGG | + | chr3_2:80185182-80185201 | Msa0429020:intron | 35.0% |
| GTTAAGGAAGAACCAATAGA+TGG | - | chr3_2:80185197-80185216 | None:intergenic | 35.0% | |
| ! | GTTCTTCCTTAACTTTAGGA+TGG | + | chr3_2:80185204-80185223 | Msa0429020:intron | 35.0% |
| !! | TCCTTAACTTTAGGATGGTT+AGG | + | chr3_2:80185209-80185228 | Msa0429020:intron | 35.0% |
| ACCTAACCATCCTAAAGTTA+AGG | - | chr3_2:80185213-80185232 | None:intergenic | 35.0% | |
| ! | TAGAAGGCCAAAACTTCTTT+TGG | - | chr3_2:80185391-80185410 | None:intergenic | 35.0% |
| GCTTCAGAAAATGAATACAG+AGG | + | chr3_2:80185542-80185561 | Msa0429020:intron | 35.0% | |
| TGTTGTCATTGATCTGTCAT+TGG | + | chr3_2:80185601-80185620 | Msa0429020:intron | 35.0% | |
| TTTAATGCAGCAAATGACAG+TGG | + | chr3_2:80185692-80185711 | Msa0429020:intron | 35.0% | |
| TTCAAACCATATTGTTCACG+TGG | + | chr3_2:80185779-80185798 | Msa0429020:CDS | 35.0% | |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr3_2:80184328-80184347 | Msa0429020:intron | 35.0% |
| AATCAAAAACGAAAACGGGA+AGG | - | chr3_2:80184646-80184665 | None:intergenic | 35.0% | |
| !!! | AAAAGATTTTCTGGAACAGC+TGG | + | chr3_2:80184734-80184753 | Msa0429020:CDS | 35.0% |
| TCAGCCGATACATCATTTAT+TGG | + | chr3_2:80184776-80184795 | Msa0429020:intron | 35.0% | |
| CCAATGTATGAGTAGAATAC+AGG | - | chr3_2:80184806-80184825 | None:intergenic | 35.0% | |
| CCTGTATTCTACTCATACAT+TGG | + | chr3_2:80184803-80184822 | Msa0429020:intron | 35.0% | |
| ! | TATGCATGTACTCTTTTCTC+AGG | - | chr3_2:80184835-80184854 | None:intergenic | 35.0% |
| !! | TGAAGTTCTGAACCATCTAT+TGG | + | chr3_2:80185182-80185201 | Msa0429020:intron | 35.0% |
| GTTAAGGAAGAACCAATAGA+TGG | - | chr3_2:80185197-80185216 | None:intergenic | 35.0% | |
| ! | GTTCTTCCTTAACTTTAGGA+TGG | + | chr3_2:80185204-80185223 | Msa0429020:intron | 35.0% |
| !! | TCCTTAACTTTAGGATGGTT+AGG | + | chr3_2:80185209-80185228 | Msa0429020:intron | 35.0% |
| ACCTAACCATCCTAAAGTTA+AGG | - | chr3_2:80185213-80185232 | None:intergenic | 35.0% | |
| ! | TAGAAGGCCAAAACTTCTTT+TGG | - | chr3_2:80185391-80185410 | None:intergenic | 35.0% |
| GCTTCAGAAAATGAATACAG+AGG | + | chr3_2:80185542-80185561 | Msa0429020:intron | 35.0% | |
| TGTTGTCATTGATCTGTCAT+TGG | + | chr3_2:80185601-80185620 | Msa0429020:intron | 35.0% | |
| TTTAATGCAGCAAATGACAG+TGG | + | chr3_2:80185692-80185711 | Msa0429020:intron | 35.0% | |
| TTCAAACCATATTGTTCACG+TGG | + | chr3_2:80185779-80185798 | Msa0429020:CDS | 35.0% | |
| ACGCAATTGAATTTCATCGG+AGG | - | chr3_2:80184013-80184032 | None:intergenic | 40.0% | |
| ! | CAATTGCGTATTGATCCTGT+TGG | + | chr3_2:80184024-80184043 | Msa0429020:CDS | 40.0% |
| TCATCATCGAAATCACCAAC+AGG | - | chr3_2:80184042-80184061 | None:intergenic | 40.0% | |
| TTTCATAACTGATGCTGCCA+CGG | + | chr3_2:80184491-80184510 | Msa0429020:intron | 40.0% | |
| AAGACTCTATTACACTCGGT+TGG | - | chr3_2:80184526-80184545 | None:intergenic | 40.0% | |
| !! | GAACTCTGAAACACTAACCA+TGG | + | chr3_2:80184928-80184947 | Msa0429020:intron | 40.0% |
| TTGAGAAACATATCCTGCCA+TGG | - | chr3_2:80184948-80184967 | None:intergenic | 40.0% | |
| AGATGGTTCAGAACTTCATC+TGG | - | chr3_2:80185180-80185199 | None:intergenic | 40.0% | |
| ! | CACTCGTCCAAAAGAAGTTT+TGG | + | chr3_2:80185381-80185400 | Msa0429020:intron | 40.0% |
| AAAGGACCACGTGAACAATA+TGG | - | chr3_2:80185788-80185807 | None:intergenic | 40.0% | |
| ACGCAATTGAATTTCATCGG+AGG | - | chr3_2:80184013-80184032 | None:intergenic | 40.0% | |
| ! | CAATTGCGTATTGATCCTGT+TGG | + | chr3_2:80184024-80184043 | Msa0429020:CDS | 40.0% |
| TCATCATCGAAATCACCAAC+AGG | - | chr3_2:80184042-80184061 | None:intergenic | 40.0% | |
| TTTCATAACTGATGCTGCCA+CGG | + | chr3_2:80184491-80184510 | Msa0429020:intron | 40.0% | |
| AAGACTCTATTACACTCGGT+TGG | - | chr3_2:80184526-80184545 | None:intergenic | 40.0% | |
| !! | GAACTCTGAAACACTAACCA+TGG | + | chr3_2:80184928-80184947 | Msa0429020:intron | 40.0% |
| TTGAGAAACATATCCTGCCA+TGG | - | chr3_2:80184948-80184967 | None:intergenic | 40.0% | |
| AGATGGTTCAGAACTTCATC+TGG | - | chr3_2:80185180-80185199 | None:intergenic | 40.0% | |
| ! | CACTCGTCCAAAAGAAGTTT+TGG | + | chr3_2:80185381-80185400 | Msa0429020:intron | 40.0% |
| AAAGGACCACGTGAACAATA+TGG | - | chr3_2:80185788-80185807 | None:intergenic | 40.0% | |
| GATGAAATTACCGGTCTTCG+TGG | + | chr3_2:80184057-80184076 | Msa0429020:CDS | 45.0% | |
| TAGTGTGTGCATAAATGGGG+AGG | - | chr3_2:80184118-80184137 | None:intergenic | 45.0% | |
| TGAGCTATGTGTGTTGCAGA+AGG | + | chr3_2:80184178-80184197 | Msa0429020:intron | 45.0% | |
| ACTTTGTGCATATCTGCTGC+AGG | + | chr3_2:80184677-80184696 | Msa0429020:intron | 45.0% | |
| ! | TCTGAAACACTAACCATGGC+AGG | + | chr3_2:80184932-80184951 | Msa0429020:intron | 45.0% |
| !! | AGTTTTGGCCTTCTAGCAGT+TGG | + | chr3_2:80185396-80185415 | Msa0429020:intron | 45.0% |
| ! | CAGTTGGTCCTCGTTACTTT+AGG | + | chr3_2:80185412-80185431 | Msa0429020:intron | 45.0% |
| !!! | CAGAGGAAACATGTTTTGGC+TGG | + | chr3_2:80185559-80185578 | Msa0429020:intron | 45.0% |
| !! | AACAGGAGTATCGTGCGAAA+TGG | + | chr3_2:80185756-80185775 | Msa0429020:CDS | 45.0% |
| TTGGTCGAAGATGTCCAGAA+AGG | + | chr3_2:80185839-80185858 | Msa0429020:CDS | 45.0% | |
| GATGAAATTACCGGTCTTCG+TGG | + | chr3_2:80184057-80184076 | Msa0429020:CDS | 45.0% | |
| TAGTGTGTGCATAAATGGGG+AGG | - | chr3_2:80184118-80184137 | None:intergenic | 45.0% | |
| TGAGCTATGTGTGTTGCAGA+AGG | + | chr3_2:80184178-80184197 | Msa0429020:intron | 45.0% | |
| ACTTTGTGCATATCTGCTGC+AGG | + | chr3_2:80184677-80184696 | Msa0429020:intron | 45.0% | |
| ! | TCTGAAACACTAACCATGGC+AGG | + | chr3_2:80184932-80184951 | Msa0429020:intron | 45.0% |
| !! | AGTTTTGGCCTTCTAGCAGT+TGG | + | chr3_2:80185396-80185415 | Msa0429020:intron | 45.0% |
| ! | CAGTTGGTCCTCGTTACTTT+AGG | + | chr3_2:80185412-80185431 | Msa0429020:intron | 45.0% |
| !!! | CAGAGGAAACATGTTTTGGC+TGG | + | chr3_2:80185559-80185578 | Msa0429020:intron | 45.0% |
| !! | AACAGGAGTATCGTGCGAAA+TGG | + | chr3_2:80185756-80185775 | Msa0429020:CDS | 45.0% |
| !! | TAATATAAATATATAAACAA+TGG | - | chr3_2:80185511-80185530 | None:intergenic | 5.0% |
| !! | TAATATAAATATATAAACAA+TGG | - | chr3_2:80185511-80185530 | None:intergenic | 5.0% |
| TCGAACTTGACCACGAAGAC+CGG | - | chr3_2:80184070-80184089 | None:intergenic | 50.0% | |
| CTGCAGGTTGCTGAAGAGAT+AGG | + | chr3_2:80184693-80184712 | Msa0429020:intron | 50.0% | |
| AACGAGGACCAACTGCTAGA+AGG | - | chr3_2:80185407-80185426 | None:intergenic | 50.0% | |
| GCAGCAAATGACAGTGGCAA+AGG | + | chr3_2:80185698-80185717 | Msa0429020:intron | 50.0% | |
| TCGAACTTGACCACGAAGAC+CGG | - | chr3_2:80184070-80184089 | None:intergenic | 50.0% | |
| CTGCAGGTTGCTGAAGAGAT+AGG | + | chr3_2:80184693-80184712 | Msa0429020:intron | 50.0% | |
| AACGAGGACCAACTGCTAGA+AGG | - | chr3_2:80185407-80185426 | None:intergenic | 50.0% | |
| GCAGCAAATGACAGTGGCAA+AGG | + | chr3_2:80185698-80185717 | Msa0429020:intron | 50.0% | |
| ATTTCATCGGAGGACGCAGC+AGG | - | chr3_2:80184003-80184022 | None:intergenic | 55.0% | |
| ACAGTGGCAAAGGCTCAAGC+TGG | + | chr3_2:80185708-80185727 | Msa0429020:CDS | 55.0% | |
| CAGTGGCAAAGGCTCAAGCT+GGG | + | chr3_2:80185709-80185728 | Msa0429020:CDS | 55.0% | |
| AGTGGCAAAGGCTCAAGCTG+GGG | + | chr3_2:80185710-80185729 | Msa0429020:CDS | 55.0% | |
| ATTTCATCGGAGGACGCAGC+AGG | - | chr3_2:80184003-80184022 | None:intergenic | 55.0% | |
| ACAGTGGCAAAGGCTCAAGC+TGG | + | chr3_2:80185708-80185727 | Msa0429020:CDS | 55.0% | |
| CAGTGGCAAAGGCTCAAGCT+GGG | + | chr3_2:80185709-80185728 | Msa0429020:CDS | 55.0% | |
| AGTGGCAAAGGCTCAAGCTG+GGG | + | chr3_2:80185710-80185729 | Msa0429020:CDS | 55.0% | |
| TCGGTTGGAAGCAGCATCCG+TGG | - | chr3_2:80184511-80184530 | None:intergenic | 60.0% | |
| TCGGTTGGAAGCAGCATCCG+TGG | - | chr3_2:80184511-80184530 | None:intergenic | 60.0% | |
| GGAGGACGCAGCAGGAGTTC+TGG | - | chr3_2:80183995-80184014 | None:intergenic | 65.0% | |
| GGAGGACGCAGCAGGAGTTC+TGG | - | chr3_2:80183995-80184014 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 80183979 | 80185860 | 80183979 | ID=Msa0429020;Name=Msa0429020 |
| chr3_2 | mRNA | 80183979 | 80185860 | 80183979 | ID=Msa0429020-mRNA-1;Parent=Msa0429020;Name=Msa0429020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|0.66|3|0|113 |
| chr3_2 | exon | 80183979 | 80184101 | 80183979 | ID=Msa0429020-mRNA-1:exon:21757;Parent=Msa0429020-mRNA-1 |
| chr3_2 | exon | 80184699 | 80184755 | 80184699 | ID=Msa0429020-mRNA-1:exon:21758;Parent=Msa0429020-mRNA-1 |
| chr3_2 | exon | 80185702 | 80185860 | 80185702 | ID=Msa0429020-mRNA-1:exon:21759;Parent=Msa0429020-mRNA-1 |
| chr3_2 | CDS | 80183979 | 80184101 | 80183979 | ID=Msa0429020-mRNA-1:cds;Parent=Msa0429020-mRNA-1 |
| chr3_2 | CDS | 80184699 | 80184755 | 80184699 | ID=Msa0429020-mRNA-1:cds;Parent=Msa0429020-mRNA-1 |
| chr3_2 | CDS | 80185702 | 80185860 | 80185702 | ID=Msa0429020-mRNA-1:cds;Parent=Msa0429020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
