AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0052800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052800 MtrunA17_Chr1g0152291 97.235 434 12 0 1 434 1 434 0.0 854
Msa0052800 MtrunA17_Chr5g0400971 63.636 407 142 4 28 434 51 451 0.0 527
Msa0052800 MtrunA17_Chr8g0384041 29.412 408 236 13 45 417 10 400 1.85e-35 135
Msa0052800 MtrunA17_Chr4g0044631 26.382 398 259 7 36 413 5 388 1.84e-31 124
Msa0052800 MtrunA17_Chr5g0434171 27.387 398 245 9 45 413 35 417 2.79e-29 119
Msa0052800 MtrunA17_Chr1g0199321 27.273 363 231 9 45 385 247 598 3.19e-29 120
Msa0052800 MtrunA17_Chr7g0267501 28.095 420 260 11 44 431 7 416 1.25e-27 114
Msa0052800 MtrunA17_Chr4g0031431 26.166 386 257 9 45 415 255 627 1.69e-27 115
Msa0052800 MtrunA17_Chr3g0129811 27.295 403 249 12 45 417 83 471 2.04e-27 114
Msa0052800 MtrunA17_Chr4g0044411 27.616 344 223 8 45 372 273 606 4.24e-27 114
Msa0052800 MtrunA17_Chr3g0110121 26.161 409 259 10 31 413 26 417 6.25e-27 112
Msa0052800 MtrunA17_Chr6g0479261 26.142 394 263 9 45 413 25 415 5.34e-26 109
Msa0052800 MtrunA17_Chr7g0248251 25.789 380 248 9 45 408 274 635 3.46e-25 108
Msa0052800 MtrunA17_Chr5g0420471 26.142 394 263 9 45 413 25 415 3.10e-24 104
Msa0052800 MtrunA17_Chr7g0237931 28.060 335 218 10 45 367 237 560 7.71e-23 101
Msa0052800 MtrunA17_Chr2g0284461 28.105 306 193 6 28 312 274 573 1.43e-22 100
Msa0052800 MtrunA17_Chr2g0322021 27.317 410 272 14 39 431 1 401 2.94e-20 92.4
Msa0052800 MtrunA17_Chr1g0177271 26.995 426 259 15 41 421 4 422 2.03e-19 90.1
Msa0052800 MtrunA17_Chr1g0177261 26.887 424 260 14 42 421 5 422 4.92e-19 89.0
Msa0052800 MtrunA17_Chr1g0177301 27.361 413 252 16 39 421 1 395 1.38e-18 87.4
Msa0052800 MtrunA17_Chr7g0275081 30.638 235 142 6 46 264 79 308 1.83e-18 87.4
Msa0052800 MtrunA17_Chr1g0177281 26.636 428 258 17 41 421 4 422 2.10e-18 87.0
Msa0052800 MtrunA17_Chr5g0437411 24.242 363 228 10 44 372 292 641 2.99e-18 87.4
Msa0052800 MtrunA17_Chr7g0234671 28.326 233 149 5 46 264 79 307 4.66e-18 86.3
Msa0052800 MtrunA17_Chr4g0059201 28.616 318 180 12 46 334 320 619 8.76e-18 85.9
Msa0052800 MtrunA17_Chr4g0013091 29.956 227 115 8 45 237 313 529 3.69e-17 84.0
Msa0052800 MtrunA17_Chr2g0280671 26.149 348 230 11 51 387 21 352 3.25e-16 80.1
Msa0052800 MtrunA17_Chr5g0413681 27.632 304 192 9 49 333 284 578 1.33e-15 79.3
Msa0052800 MtrunA17_Chr3g0122721 50.000 66 33 0 46 111 281 346 5.15e-15 77.4
Msa0052800 MtrunA17_Chr3g0117851 44.828 87 46 1 22 108 254 338 1.04e-14 76.3
Msa0052800 MtrunA17_Chr4g0048811 46.377 69 36 1 44 111 4 72 6.16e-14 72.4
Msa0052800 MtrunA17_Chr1g0198984 47.692 65 34 0 58 122 1 65 7.01e-14 67.8
Msa0052800 MtrunA17_Chr1g0183781 46.970 66 35 0 46 111 242 307 2.86e-13 72.0
Msa0052800 MtrunA17_Chr3g0106931 47.761 67 35 0 45 111 233 299 1.03e-12 70.1
Msa0052800 MtrunA17_Chr3g0144071 28.033 239 133 12 42 263 27 243 1.65e-12 69.7
Msa0052800 MtrunA17_Chr7g0261371 43.243 74 42 0 38 111 234 307 2.04e-12 69.3
Msa0052800 MtrunA17_Chr1g0189811 24.176 273 184 7 45 303 63 326 2.19e-12 68.6
Msa0052800 MtrunA17_Chr4g0025501 47.887 71 34 2 44 111 5 75 3.16e-12 68.2
Msa0052800 MtrunA17_Chr8g0377151 45.455 66 36 0 46 111 283 348 5.80e-12 67.8
Msa0052800 MtrunA17_Chr8g0373031 45.455 66 36 0 46 111 276 341 8.28e-12 67.4
Msa0052800 MtrunA17_Chr7g0214471 32.847 137 71 4 45 163 595 728 9.33e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052800 AT3G49810.1 62.408 407 147 4 28 434 48 448 0.0 520
Msa0052800 AT5G65920.1 59.091 418 163 5 19 434 33 444 6.19e-174 494
Msa0052800 AT5G65920.2 59.091 418 163 5 19 434 33 444 6.19e-174 494
Msa0052800 AT3G19380.1 32.454 379 239 10 36 399 5 381 1.12e-40 150
Msa0052800 AT1G49780.1 30.633 395 255 8 36 413 5 397 8.11e-36 137
Msa0052800 AT3G18710.1 27.873 409 257 13 37 419 4 400 6.17e-33 129
Msa0052800 AT5G64660.1 27.700 426 222 15 45 417 10 402 1.44e-31 125
Msa0052800 AT3G54850.1 28.235 340 217 8 45 368 248 576 1.77e-30 124
Msa0052800 AT2G35930.1 26.506 415 267 11 39 429 6 406 4.10e-28 115
Msa0052800 AT1G23030.1 26.741 359 234 11 26 366 218 565 1.19e-27 115
Msa0052800 AT1G66160.1 26.494 385 253 11 45 413 33 403 1.54e-26 111
Msa0052800 AT3G46510.1 25.323 387 259 9 45 415 256 628 2.06e-26 112
Msa0052800 AT5G37490.1 25.515 388 262 7 45 413 31 410 2.73e-26 110
Msa0052800 AT1G71020.2 27.273 341 220 9 45 367 95 425 5.53e-26 110
Msa0052800 AT1G71020.1 27.273 341 220 9 45 367 243 573 9.48e-26 110
Msa0052800 AT5G42340.1 30.081 246 161 6 45 282 290 532 2.77e-25 109
Msa0052800 AT2G28830.1 27.273 308 198 4 46 335 185 484 1.43e-24 106
Msa0052800 AT5G09800.1 26.434 401 253 16 42 417 8 391 2.04e-23 102
Msa0052800 AT3G52450.1 25.952 420 260 12 39 413 1 414 3.78e-22 98.6
Msa0052800 AT1G29340.1 27.055 292 188 6 40 312 300 585 2.08e-20 94.4
Msa0052800 AT5G01830.1 30.244 205 125 4 44 234 273 473 3.21e-17 84.7
Msa0052800 AT4G21350.1 25.076 331 229 7 44 367 4 322 7.44e-17 82.4
Msa0052800 AT3G07360.1 28.146 302 187 10 46 331 75 362 2.60e-16 81.3
Msa0052800 AT1G67530.2 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa0052800 AT1G67530.1 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa0052800 AT1G67530.4 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa0052800 AT1G67530.3 54.545 66 30 0 46 111 273 338 1.40e-15 79.3
Msa0052800 AT1G60190.1 28.214 280 173 10 51 310 284 555 9.74e-15 77.0
Msa0052800 AT1G24330.1 51.515 66 32 0 46 111 276 341 3.43e-14 75.5
Msa0052800 AT1G24330.2 51.515 66 32 0 46 111 276 341 3.43e-14 75.5
Msa0052800 AT1G10560.1 25.538 325 198 11 49 339 292 606 6.13e-14 74.3
Msa0052800 AT3G11840.1 39.167 120 65 5 44 157 9 126 7.40e-14 73.6
Msa0052800 AT1G27910.1 51.515 66 32 0 46 111 280 345 9.14e-14 73.9
Msa0052800 AT2G23140.1 47.619 63 33 0 49 111 237 299 1.09e-12 70.5
Msa0052800 AT2G23140.2 47.619 63 33 0 49 111 234 296 1.12e-12 70.5
Msa0052800 AT2G23140.4 47.619 63 33 0 49 111 234 296 1.12e-12 70.5
Msa0052800 AT2G23140.3 47.619 63 33 0 49 111 45 107 1.26e-12 70.1
Msa0052800 AT2G23140.5 47.619 63 33 0 49 111 45 107 1.26e-12 70.1
Msa0052800 AT3G54790.2 42.647 68 39 0 45 112 202 269 2.04e-12 69.7
Msa0052800 AT3G54790.3 42.647 68 39 0 45 112 238 305 2.16e-12 69.7
Msa0052800 AT3G54790.1 42.647 68 39 0 45 112 238 305 2.16e-12 69.7
Msa0052800 AT3G02840.1 23.954 263 184 7 163 412 92 351 4.19e-12 67.8
Msa0052800 AT5G65500.2 41.096 73 43 0 43 115 721 793 3.10e-11 65.9
Msa0052800 AT5G65500.1 41.096 73 43 0 43 115 713 785 3.20e-11 65.9

Find 68 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACTCGTTATTCAAATT+TGG 0.155411 1_2:+7109448 None:intergenic
GACCAAGTGAAAACCATTTA+AGG 0.159560 1_2:+7110154 None:intergenic
TATCGGTATCATTGTGAATT+TGG 0.172886 1_2:-7109806 Msa0052800:CDS
CATCCAAATGGGATATTAAT+TGG 0.260923 1_2:-7109565 Msa0052800:CDS
TGTTTCAAGTTTGAGTCTTT+TGG 0.266950 1_2:-7109620 Msa0052800:CDS
ATAGATCCAACATCCTTAAA+TGG 0.267794 1_2:-7110167 Msa0052800:CDS
GGTTTGGTTTGTTCTTTGTT+AGG 0.271110 1_2:-7109862 Msa0052800:CDS
TCAAAGCTCTTAAGGATCTT+AGG 0.281536 1_2:-7109942 Msa0052800:CDS
GCCTTTGAAGCACATTCTTC+AGG 0.321820 1_2:+7109256 None:intergenic
AACACTTGAAGAAGGGAAAT+TGG 0.332578 1_2:-7109392 Msa0052800:CDS
GAAGATTTCTGTTTCAAAAC+AGG 0.345157 1_2:+7109178 None:intergenic
ATTGATTGAAATGTTGTTGA+TGG 0.345273 1_2:-7109674 Msa0052800:CDS
CATAACTCTTGCATTGTTGT+TGG 0.349959 1_2:+7110120 None:intergenic
GGAAAATGGCGGGGTTGGTT+TGG 0.353204 1_2:-7109878 Msa0052800:CDS
TGCATTGGTTCAAGTGAGAT+TGG 0.353424 1_2:+7110225 None:intergenic
GGATGTTCAAGGAAGAGTTT+TGG 0.360543 1_2:-7110007 Msa0052800:CDS
CAACAACAATGCAAGAGTTA+TGG 0.362659 1_2:-7110119 Msa0052800:CDS
AGACCAATTAATATCCCATT+TGG 0.368703 1_2:+7109562 None:intergenic
AAGGATGTTGGATCTATCAT+AGG 0.371646 1_2:+7110173 None:intergenic
AAATTTGAATAACGAGTGTT+TGG 0.375150 1_2:-7109446 Msa0052800:CDS
TGACCTGTGCAAAGTGTAAC+AGG 0.377472 1_2:+7110198 None:intergenic
GCATCCAGCTAAAGTTTCAT+TGG 0.383621 1_2:-7109749 Msa0052800:CDS
AGGAAAACAGTGTTGGAAAA+TGG 0.387358 1_2:-7109892 Msa0052800:CDS
TTGGTTCTCACACAAGTACT+TGG 0.388106 1_2:-7110049 Msa0052800:CDS
AACAACAATGCAAGAGTTAT+GGG 0.388335 1_2:-7110118 Msa0052800:CDS
TGAGATTAATAATCCTTTGT+TGG 0.392736 1_2:-7110367 Msa0052800:CDS
GATAGCACTTTACATATTAG+AGG 0.398032 1_2:-7109422 Msa0052800:CDS
GAGATTAATAATCCTTTGTT+GGG 0.398485 1_2:-7110366 Msa0052800:CDS
ACCACATTAGGTATAATGTT+TGG 0.400820 1_2:+7109355 None:intergenic
AAAGGCTGTGGAAGCTGGAT+TGG 0.406186 1_2:-7109239 Msa0052800:CDS
ATCAACATCTTTACCACATT+AGG 0.406347 1_2:+7109343 None:intergenic
AAGTAGAGTCAAAGCTCTTA+AGG 0.410312 1_2:-7109950 Msa0052800:CDS
TGAAAACCATTTAAGGATGT+TGG 0.416261 1_2:+7110161 None:intergenic
TTTGGTTGGATTATTGAGAT+TGG 0.418112 1_2:-7109602 Msa0052800:CDS
GCTTCAAAGGCTGTGGAAGC+TGG 0.429451 1_2:-7109244 Msa0052800:CDS
AATTGTTTGAGAGTGTTGTT+TGG 0.436978 1_2:+7110081 None:intergenic
TGAAATGTTGTTGATGGAAG+TGG 0.440393 1_2:-7109668 Msa0052800:CDS
AGAGATAAGAAACATCCAAA+TGG 0.458686 1_2:-7109577 Msa0052800:CDS
TCAAACAATTGATCTTTACT+TGG 0.459813 1_2:-7110068 Msa0052800:CDS
TTGTTTCTCATGTTTGTGCT+AGG 0.464535 1_2:-7109912 Msa0052800:CDS
AGTGGAAAGAAATGAAACTA+TGG 0.477086 1_2:-7109650 Msa0052800:CDS
GTTGTTGATATTATGAATGA+AGG 0.490566 1_2:-7109727 Msa0052800:CDS
GAGATAAGAAACATCCAAAT+GGG 0.501701 1_2:-7109576 Msa0052800:CDS
GAGACACTCAAGAAGGTAAA+GGG 0.502037 1_2:-7109976 Msa0052800:CDS
ATTGGACATATAAACACATA+AGG 0.504104 1_2:+7110243 None:intergenic
AAACAGTGTTGGAAAATGGC+GGG 0.518645 1_2:-7109888 Msa0052800:CDS
AAGAAGCTTGAGGATGTTCA+AGG 0.520273 1_2:-7110018 Msa0052800:CDS
GTGTTGGAAAATGGCGGGGT+TGG 0.525268 1_2:-7109883 Msa0052800:CDS
ACAACCAATGAAACTTTAGC+TGG 0.528214 1_2:+7109745 None:intergenic
GGAGACACTCAAGAAGGTAA+AGG 0.529677 1_2:-7109977 Msa0052800:CDS
AGTGTAACAGGCTCTTGCAT+TGG 0.532871 1_2:+7110210 None:intergenic
GGTAAAATCTCAATCAATTG+CGG 0.551711 1_2:+7109469 None:intergenic
ACCTGAAGAATGTGCTTCAA+AGG 0.554133 1_2:-7109257 Msa0052800:CDS
AGAATGTGCTTCAAAGGCTG+TGG 0.559930 1_2:-7109251 Msa0052800:CDS
TCCAAACATTATACCTAATG+TGG 0.567506 1_2:-7109356 Msa0052800:CDS
GTATTGTCAACACTTGAAGA+AGG 0.568213 1_2:-7109400 Msa0052800:CDS
GAGCCTGTTACACTTTGCAC+AGG 0.589911 1_2:-7110201 Msa0052800:CDS
AGAAGCTCTATGATAAGCAT+AGG 0.590919 1_2:-7109499 Msa0052800:CDS
TGGTTCTCACACAAGTACTT+GGG 0.592232 1_2:-7110048 Msa0052800:CDS
GATGTTTCAAAACCCAACAA+AGG 0.598829 1_2:+7110354 None:intergenic
TTGTGCTAGGAAAACAGTGT+TGG 0.603588 1_2:-7109899 Msa0052800:CDS
TATTGTCAACACTTGAAGAA+GGG 0.604875 1_2:-7109399 Msa0052800:CDS
AACATTGGAGACACTCAAGA+AGG 0.620353 1_2:-7109983 Msa0052800:CDS
AACAGTGTTGGAAAATGGCG+GGG 0.621402 1_2:-7109887 Msa0052800:CDS
GTTGTTGGTTGTGAAGCTAT+CGG 0.633853 1_2:-7109823 Msa0052800:CDS
AAAACAGTGTTGGAAAATGG+CGG 0.637218 1_2:-7109889 Msa0052800:CDS
GGGAATGAAGAAGAAGCTTG+AGG 0.650651 1_2:-7110028 Msa0052800:CDS
TTATTGCTTGTGATTCAGAG+TGG 0.747357 1_2:-7109208 Msa0052800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAGATTAATAATCCTTTGT+TGG - chr1_2:7109107-7109126 Msa0052800:CDS 25.0%
! GAGATTAATAATCCTTTGTT+GGG - chr1_2:7109108-7109127 Msa0052800:CDS 25.0%
! ATTGGACATATAAACACATA+AGG + chr1_2:7109234-7109253 None:intergenic 25.0%
! TCAAACAATTGATCTTTACT+TGG - chr1_2:7109406-7109425 Msa0052800:CDS 25.0%
! GTTGTTGATATTATGAATGA+AGG - chr1_2:7109747-7109766 Msa0052800:CDS 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - chr1_2:7109800-7109819 Msa0052800:CDS 25.0%
! AAACACTCGTTATTCAAATT+TGG + chr1_2:7110029-7110048 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - chr1_2:7110028-7110047 Msa0052800:CDS 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - chr1_2:7110177-7110196 Msa0052800:CDS 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - chr1_2:7110178-7110197 Msa0052800:CDS 25.0%
! TGAGATTAATAATCCTTTGT+TGG - chr1_2:7109107-7109126 Msa0052800:CDS 25.0%
! GAGATTAATAATCCTTTGTT+GGG - chr1_2:7109108-7109127 Msa0052800:CDS 25.0%
! ATTGGACATATAAACACATA+AGG + chr1_2:7109234-7109253 None:intergenic 25.0%
! TCAAACAATTGATCTTTACT+TGG - chr1_2:7109406-7109425 Msa0052800:CDS 25.0%
! GTTGTTGATATTATGAATGA+AGG - chr1_2:7109747-7109766 Msa0052800:CDS 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - chr1_2:7109800-7109819 Msa0052800:CDS 25.0%
! AAACACTCGTTATTCAAATT+TGG + chr1_2:7110029-7110048 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - chr1_2:7110028-7110047 Msa0052800:CDS 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - chr1_2:7110177-7110196 Msa0052800:CDS 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - chr1_2:7110178-7110197 Msa0052800:CDS 25.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - chr1_2:7109129-7109148 Msa0052800:CDS 30.0%
ATAGATCCAACATCCTTAAA+TGG - chr1_2:7109307-7109326 Msa0052800:CDS 30.0%
TGAAAACCATTTAAGGATGT+TGG + chr1_2:7109316-7109335 None:intergenic 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - chr1_2:7109318-7109337 Msa0052800:CDS 30.0%
AACAACAATGCAAGAGTTAT+GGG - chr1_2:7109356-7109375 Msa0052800:CDS 30.0%
!! AATTGTTTGAGAGTGTTGTT+TGG + chr1_2:7109396-7109415 None:intergenic 30.0%
! TCTTTTACTTCACATGTTGT+TGG - chr1_2:7109636-7109655 Msa0052800:CDS 30.0%
TATCGGTATCATTGTGAATT+TGG - chr1_2:7109668-7109687 Msa0052800:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - chr1_2:7109824-7109843 Msa0052800:CDS 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - chr1_2:7109854-7109873 Msa0052800:CDS 30.0%
TTTGGTTGGATTATTGAGAT+TGG - chr1_2:7109872-7109891 Msa0052800:CDS 30.0%
AGAGATAAGAAACATCCAAA+TGG - chr1_2:7109897-7109916 Msa0052800:CDS 30.0%
GAGATAAGAAACATCCAAAT+GGG - chr1_2:7109898-7109917 Msa0052800:CDS 30.0%
CATCCAAATGGGATATTAAT+TGG - chr1_2:7109909-7109928 Msa0052800:CDS 30.0%
AGACCAATTAATATCCCATT+TGG + chr1_2:7109915-7109934 None:intergenic 30.0%
GGTAAAATCTCAATCAATTG+CGG + chr1_2:7110008-7110027 None:intergenic 30.0%
GATAGCACTTTACATATTAG+AGG - chr1_2:7110052-7110071 Msa0052800:CDS 30.0%
TATTGTCAACACTTGAAGAA+GGG - chr1_2:7110075-7110094 Msa0052800:CDS 30.0%
TCCAAACATTATACCTAATG+TGG - chr1_2:7110118-7110137 Msa0052800:CDS 30.0%
ACCACATTAGGTATAATGTT+TGG + chr1_2:7110122-7110141 None:intergenic 30.0%
ATCAACATCTTTACCACATT+AGG + chr1_2:7110134-7110153 None:intergenic 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + chr1_2:7110299-7110318 None:intergenic 30.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - chr1_2:7109129-7109148 Msa0052800:CDS 30.0%
ATAGATCCAACATCCTTAAA+TGG - chr1_2:7109307-7109326 Msa0052800:CDS 30.0%
TGAAAACCATTTAAGGATGT+TGG + chr1_2:7109316-7109335 None:intergenic 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - chr1_2:7109318-7109337 Msa0052800:CDS 30.0%
AACAACAATGCAAGAGTTAT+GGG - chr1_2:7109356-7109375 Msa0052800:CDS 30.0%
!! AATTGTTTGAGAGTGTTGTT+TGG + chr1_2:7109396-7109415 None:intergenic 30.0%
! TCTTTTACTTCACATGTTGT+TGG - chr1_2:7109636-7109655 Msa0052800:CDS 30.0%
TATCGGTATCATTGTGAATT+TGG - chr1_2:7109668-7109687 Msa0052800:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - chr1_2:7109824-7109843 Msa0052800:CDS 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - chr1_2:7109854-7109873 Msa0052800:CDS 30.0%
TTTGGTTGGATTATTGAGAT+TGG - chr1_2:7109872-7109891 Msa0052800:CDS 30.0%
AGAGATAAGAAACATCCAAA+TGG - chr1_2:7109897-7109916 Msa0052800:CDS 30.0%
GAGATAAGAAACATCCAAAT+GGG - chr1_2:7109898-7109917 Msa0052800:CDS 30.0%
CATCCAAATGGGATATTAAT+TGG - chr1_2:7109909-7109928 Msa0052800:CDS 30.0%
AGACCAATTAATATCCCATT+TGG + chr1_2:7109915-7109934 None:intergenic 30.0%
GGTAAAATCTCAATCAATTG+CGG + chr1_2:7110008-7110027 None:intergenic 30.0%
GATAGCACTTTACATATTAG+AGG - chr1_2:7110052-7110071 Msa0052800:CDS 30.0%
TATTGTCAACACTTGAAGAA+GGG - chr1_2:7110075-7110094 Msa0052800:CDS 30.0%
TCCAAACATTATACCTAATG+TGG - chr1_2:7110118-7110137 Msa0052800:CDS 30.0%
ACCACATTAGGTATAATGTT+TGG + chr1_2:7110122-7110141 None:intergenic 30.0%
ATCAACATCTTTACCACATT+AGG + chr1_2:7110134-7110153 None:intergenic 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + chr1_2:7110299-7110318 None:intergenic 30.0%
GATGTTTCAAAACCCAACAA+AGG + chr1_2:7109123-7109142 None:intergenic 35.0%
AAGGATGTTGGATCTATCAT+AGG + chr1_2:7109304-7109323 None:intergenic 35.0%
GACCAAGTGAAAACCATTTA+AGG + chr1_2:7109323-7109342 None:intergenic 35.0%
CATAACTCTTGCATTGTTGT+TGG + chr1_2:7109357-7109376 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - chr1_2:7109355-7109374 Msa0052800:CDS 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - chr1_2:7109476-7109495 Msa0052800:CDS 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - chr1_2:7109524-7109543 Msa0052800:CDS 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - chr1_2:7109532-7109551 Msa0052800:CDS 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - chr1_2:7109562-7109581 Msa0052800:CDS 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - chr1_2:7109582-7109601 Msa0052800:CDS 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - chr1_2:7109585-7109604 Msa0052800:CDS 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - chr1_2:7109612-7109631 Msa0052800:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + chr1_2:7109732-7109751 None:intergenic 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - chr1_2:7109806-7109825 Msa0052800:CDS 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - chr1_2:7109858-7109877 Msa0052800:CDS 35.0%
AGAAGCTCTATGATAAGCAT+AGG - chr1_2:7109975-7109994 Msa0052800:CDS 35.0%
GTATTGTCAACACTTGAAGA+AGG - chr1_2:7110074-7110093 Msa0052800:CDS 35.0%
AACACTTGAAGAAGGGAAAT+TGG - chr1_2:7110082-7110101 Msa0052800:CDS 35.0%
TTATTGCTTGTGATTCAGAG+TGG - chr1_2:7110266-7110285 Msa0052800:CDS 35.0%
GATGTTTCAAAACCCAACAA+AGG + chr1_2:7109123-7109142 None:intergenic 35.0%
AAGGATGTTGGATCTATCAT+AGG + chr1_2:7109304-7109323 None:intergenic 35.0%
GACCAAGTGAAAACCATTTA+AGG + chr1_2:7109323-7109342 None:intergenic 35.0%
CATAACTCTTGCATTGTTGT+TGG + chr1_2:7109357-7109376 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - chr1_2:7109355-7109374 Msa0052800:CDS 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - chr1_2:7109476-7109495 Msa0052800:CDS 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - chr1_2:7109524-7109543 Msa0052800:CDS 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - chr1_2:7109532-7109551 Msa0052800:CDS 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - chr1_2:7109562-7109581 Msa0052800:CDS 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - chr1_2:7109582-7109601 Msa0052800:CDS 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - chr1_2:7109585-7109604 Msa0052800:CDS 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - chr1_2:7109612-7109631 Msa0052800:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + chr1_2:7109732-7109751 None:intergenic 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - chr1_2:7109806-7109825 Msa0052800:CDS 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - chr1_2:7109858-7109877 Msa0052800:CDS 35.0%
AGAAGCTCTATGATAAGCAT+AGG - chr1_2:7109975-7109994 Msa0052800:CDS 35.0%
GTATTGTCAACACTTGAAGA+AGG - chr1_2:7110074-7110093 Msa0052800:CDS 35.0%
AACACTTGAAGAAGGGAAAT+TGG - chr1_2:7110082-7110101 Msa0052800:CDS 35.0%
TTATTGCTTGTGATTCAGAG+TGG - chr1_2:7110266-7110285 Msa0052800:CDS 35.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + chr1_2:7109252-7109271 None:intergenic 40.0%
! TTGGTTCTCACACAAGTACT+TGG - chr1_2:7109425-7109444 Msa0052800:CDS 40.0%
TGGTTCTCACACAAGTACTT+GGG - chr1_2:7109426-7109445 Msa0052800:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - chr1_2:7109456-7109475 Msa0052800:CDS 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - chr1_2:7109467-7109486 Msa0052800:CDS 40.0%
AACATTGGAGACACTCAAGA+AGG - chr1_2:7109491-7109510 Msa0052800:CDS 40.0%
GAGACACTCAAGAAGGTAAA+GGG - chr1_2:7109498-7109517 Msa0052800:CDS 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - chr1_2:7109575-7109594 Msa0052800:CDS 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - chr1_2:7109586-7109605 Msa0052800:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - chr1_2:7109651-7109670 Msa0052800:CDS 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - chr1_2:7109725-7109744 Msa0052800:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - chr1_2:7110217-7110236 Msa0052800:CDS 40.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + chr1_2:7109252-7109271 None:intergenic 40.0%
! TTGGTTCTCACACAAGTACT+TGG - chr1_2:7109425-7109444 Msa0052800:CDS 40.0%
TGGTTCTCACACAAGTACTT+GGG - chr1_2:7109426-7109445 Msa0052800:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - chr1_2:7109456-7109475 Msa0052800:CDS 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - chr1_2:7109467-7109486 Msa0052800:CDS 40.0%
AACATTGGAGACACTCAAGA+AGG - chr1_2:7109491-7109510 Msa0052800:CDS 40.0%
GAGACACTCAAGAAGGTAAA+GGG - chr1_2:7109498-7109517 Msa0052800:CDS 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - chr1_2:7109575-7109594 Msa0052800:CDS 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - chr1_2:7109586-7109605 Msa0052800:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - chr1_2:7109651-7109670 Msa0052800:CDS 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - chr1_2:7109725-7109744 Msa0052800:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - chr1_2:7110217-7110236 Msa0052800:CDS 40.0%
AGTGTAACAGGCTCTTGCAT+TGG + chr1_2:7109267-7109286 None:intergenic 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + chr1_2:7109279-7109298 None:intergenic 45.0%
GGGAATGAAGAAGAAGCTTG+AGG - chr1_2:7109446-7109465 Msa0052800:CDS 45.0%
GGAGACACTCAAGAAGGTAA+AGG - chr1_2:7109497-7109516 Msa0052800:CDS 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - chr1_2:7109587-7109606 Msa0052800:CDS 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + chr1_2:7110221-7110240 None:intergenic 45.0%
AGAATGTGCTTCAAAGGCTG+TGG - chr1_2:7110223-7110242 Msa0052800:CDS 45.0%
AGTGTAACAGGCTCTTGCAT+TGG + chr1_2:7109267-7109286 None:intergenic 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + chr1_2:7109279-7109298 None:intergenic 45.0%
GGGAATGAAGAAGAAGCTTG+AGG - chr1_2:7109446-7109465 Msa0052800:CDS 45.0%
GGAGACACTCAAGAAGGTAA+AGG - chr1_2:7109497-7109516 Msa0052800:CDS 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - chr1_2:7109587-7109606 Msa0052800:CDS 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + chr1_2:7110221-7110240 None:intergenic 45.0%
AGAATGTGCTTCAAAGGCTG+TGG - chr1_2:7110223-7110242 Msa0052800:CDS 45.0%
GAGCCTGTTACACTTTGCAC+AGG - chr1_2:7109273-7109292 Msa0052800:CDS 50.0%
AAAGGCTGTGGAAGCTGGAT+TGG - chr1_2:7110235-7110254 Msa0052800:CDS 50.0%
GAGCCTGTTACACTTTGCAC+AGG - chr1_2:7109273-7109292 Msa0052800:CDS 50.0%
AAAGGCTGTGGAAGCTGGAT+TGG - chr1_2:7110235-7110254 Msa0052800:CDS 50.0%
! GTGTTGGAAAATGGCGGGGT+TGG - chr1_2:7109591-7109610 Msa0052800:CDS 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - chr1_2:7109596-7109615 Msa0052800:CDS 55.0%
GCTTCAAAGGCTGTGGAAGC+TGG - chr1_2:7110230-7110249 Msa0052800:CDS 55.0%
! GTGTTGGAAAATGGCGGGGT+TGG - chr1_2:7109591-7109610 Msa0052800:CDS 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - chr1_2:7109596-7109615 Msa0052800:CDS 55.0%
GCTTCAAAGGCTGTGGAAGC+TGG - chr1_2:7110230-7110249 Msa0052800:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7109096 7110400 7109096 ID=Msa0052800;Name=Msa0052800
chr1_2 mRNA 7109096 7110400 7109096 ID=Msa0052800-mRNA-1;Parent=Msa0052800;Name=Msa0052800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|434
chr1_2 exon 7109096 7110400 7109096 ID=Msa0052800-mRNA-1:exon:2415;Parent=Msa0052800-mRNA-1
chr1_2 CDS 7109096 7110400 7109096 ID=Msa0052800-mRNA-1:cds;Parent=Msa0052800-mRNA-1
Gene Sequence

>Msa0052800

ATGCTTTCATATGAGATTAATAATCCTTTGTTGGGTTTTGAAACATCTTTCAAAGGTTGTTTTTTTAGTGTCTTAGACACTGAAAAAATAGATCTCAAGTTGATAATTGAAGAGCTTGATTCAATTGATGATGTTCCTTATGTGTTTATATGTCCAATCTCACTTGAACCAATGCAAGAGCCTGTTACACTTTGCACAGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGTTATGGGATGATTCAATCACTCCAAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAAGTACTTGGGAATGAAGAAGAAGCTTGAGGATGTTCAAGGAAGAGTTTTGGAAACATTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACAGTGTTGGAAAATGGCGGGGTTGGTTTGGTTTGTTCTTTGTTAGGTTCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATCGGTATCATTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAAGTATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATTATGAATGAAGGAACTACTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAAGTGGAAAGAAATGAAACTATGGTTGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGATTATTGAGATTGGTGAGAGATAAGAAACATCCAAATGGGATATTAATTGGTCTCACATTGCTTAAAAAAGTATTATGTTGTCATGAATCAATTAGAAGCTCTATGATAAGCATAGGAGCAATTCCGCAATTGATTGAGATTTTACCAAATTTGAATAACGAGTGTTTGGAGATAGCACTTTACATATTAGAGGTATTGTCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCTAATGTGGTAAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCACTGTCAATTTTATGGGCTATTTACAAGCTTGCACCTGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAATTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAATCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTTATTTCTAAGTGTATGCTTACTACAACAATACAATGA

Protein sequence

>Msa0052800

MLSYEINNPLLGFETSFKGCFFSVLDTEKIDLKLIIEELDSIDDVPYVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHKYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTVLENGGVGLVCSLLGSFTSHVVGCEAIGIIVNLDLSLELKRKYLMHPAKVSLVVDIMNEGTTETKMNCAKLIEMLLMEVERNETMVEIVSSLSLLVGLLRLVRDKKHPNGILIGLTLLKKVLCCHESIRSSMISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSVNYSTSIFISKCMLTTTIQ*