AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1173170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1173170 MtrunA17_Chr1g0152291 97.235 434 12 0 1 434 1 434 0.0 854
Msa1173170 MtrunA17_Chr5g0400971 63.636 407 142 4 28 434 51 451 0.0 527
Msa1173170 MtrunA17_Chr8g0384041 29.412 408 236 13 45 417 10 400 1.85e-35 135
Msa1173170 MtrunA17_Chr4g0044631 26.382 398 259 7 36 413 5 388 1.84e-31 124
Msa1173170 MtrunA17_Chr5g0434171 27.387 398 245 9 45 413 35 417 2.79e-29 119
Msa1173170 MtrunA17_Chr1g0199321 27.273 363 231 9 45 385 247 598 3.19e-29 120
Msa1173170 MtrunA17_Chr7g0267501 28.095 420 260 11 44 431 7 416 1.25e-27 114
Msa1173170 MtrunA17_Chr4g0031431 26.166 386 257 9 45 415 255 627 1.69e-27 115
Msa1173170 MtrunA17_Chr3g0129811 27.295 403 249 12 45 417 83 471 2.04e-27 114
Msa1173170 MtrunA17_Chr4g0044411 27.616 344 223 8 45 372 273 606 4.24e-27 114
Msa1173170 MtrunA17_Chr3g0110121 26.161 409 259 10 31 413 26 417 6.25e-27 112
Msa1173170 MtrunA17_Chr6g0479261 26.142 394 263 9 45 413 25 415 5.34e-26 109
Msa1173170 MtrunA17_Chr7g0248251 25.789 380 248 9 45 408 274 635 3.46e-25 108
Msa1173170 MtrunA17_Chr5g0420471 26.142 394 263 9 45 413 25 415 3.10e-24 104
Msa1173170 MtrunA17_Chr7g0237931 28.060 335 218 10 45 367 237 560 7.71e-23 101
Msa1173170 MtrunA17_Chr2g0284461 28.105 306 193 6 28 312 274 573 1.43e-22 100
Msa1173170 MtrunA17_Chr2g0322021 27.317 410 272 14 39 431 1 401 2.94e-20 92.4
Msa1173170 MtrunA17_Chr1g0177271 26.995 426 259 15 41 421 4 422 2.03e-19 90.1
Msa1173170 MtrunA17_Chr1g0177261 26.887 424 260 14 42 421 5 422 4.92e-19 89.0
Msa1173170 MtrunA17_Chr1g0177301 27.361 413 252 16 39 421 1 395 1.38e-18 87.4
Msa1173170 MtrunA17_Chr7g0275081 30.638 235 142 6 46 264 79 308 1.83e-18 87.4
Msa1173170 MtrunA17_Chr1g0177281 26.636 428 258 17 41 421 4 422 2.10e-18 87.0
Msa1173170 MtrunA17_Chr5g0437411 24.242 363 228 10 44 372 292 641 2.99e-18 87.4
Msa1173170 MtrunA17_Chr7g0234671 28.326 233 149 5 46 264 79 307 4.66e-18 86.3
Msa1173170 MtrunA17_Chr4g0059201 28.616 318 180 12 46 334 320 619 8.76e-18 85.9
Msa1173170 MtrunA17_Chr4g0013091 29.956 227 115 8 45 237 313 529 3.69e-17 84.0
Msa1173170 MtrunA17_Chr2g0280671 26.149 348 230 11 51 387 21 352 3.25e-16 80.1
Msa1173170 MtrunA17_Chr5g0413681 27.632 304 192 9 49 333 284 578 1.33e-15 79.3
Msa1173170 MtrunA17_Chr3g0122721 50.000 66 33 0 46 111 281 346 5.15e-15 77.4
Msa1173170 MtrunA17_Chr3g0117851 44.828 87 46 1 22 108 254 338 1.04e-14 76.3
Msa1173170 MtrunA17_Chr4g0048811 46.377 69 36 1 44 111 4 72 6.16e-14 72.4
Msa1173170 MtrunA17_Chr1g0198984 47.692 65 34 0 58 122 1 65 7.01e-14 67.8
Msa1173170 MtrunA17_Chr1g0183781 46.970 66 35 0 46 111 242 307 2.86e-13 72.0
Msa1173170 MtrunA17_Chr3g0106931 47.761 67 35 0 45 111 233 299 1.03e-12 70.1
Msa1173170 MtrunA17_Chr3g0144071 28.033 239 133 12 42 263 27 243 1.65e-12 69.7
Msa1173170 MtrunA17_Chr7g0261371 43.243 74 42 0 38 111 234 307 2.04e-12 69.3
Msa1173170 MtrunA17_Chr1g0189811 24.176 273 184 7 45 303 63 326 2.19e-12 68.6
Msa1173170 MtrunA17_Chr4g0025501 47.887 71 34 2 44 111 5 75 3.16e-12 68.2
Msa1173170 MtrunA17_Chr8g0377151 45.455 66 36 0 46 111 283 348 5.80e-12 67.8
Msa1173170 MtrunA17_Chr8g0373031 45.455 66 36 0 46 111 276 341 8.28e-12 67.4
Msa1173170 MtrunA17_Chr7g0214471 32.847 137 71 4 45 163 595 728 9.33e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1173170 AT3G49810.1 62.408 407 147 4 28 434 48 448 0.0 520
Msa1173170 AT5G65920.1 59.091 418 163 5 19 434 33 444 6.19e-174 494
Msa1173170 AT5G65920.2 59.091 418 163 5 19 434 33 444 6.19e-174 494
Msa1173170 AT3G19380.1 32.454 379 239 10 36 399 5 381 1.12e-40 150
Msa1173170 AT1G49780.1 30.633 395 255 8 36 413 5 397 8.11e-36 137
Msa1173170 AT3G18710.1 27.873 409 257 13 37 419 4 400 6.17e-33 129
Msa1173170 AT5G64660.1 27.700 426 222 15 45 417 10 402 1.44e-31 125
Msa1173170 AT3G54850.1 28.235 340 217 8 45 368 248 576 1.77e-30 124
Msa1173170 AT2G35930.1 26.506 415 267 11 39 429 6 406 4.10e-28 115
Msa1173170 AT1G23030.1 26.741 359 234 11 26 366 218 565 1.19e-27 115
Msa1173170 AT1G66160.1 26.494 385 253 11 45 413 33 403 1.54e-26 111
Msa1173170 AT3G46510.1 25.323 387 259 9 45 415 256 628 2.06e-26 112
Msa1173170 AT5G37490.1 25.515 388 262 7 45 413 31 410 2.73e-26 110
Msa1173170 AT1G71020.2 27.273 341 220 9 45 367 95 425 5.53e-26 110
Msa1173170 AT1G71020.1 27.273 341 220 9 45 367 243 573 9.48e-26 110
Msa1173170 AT5G42340.1 30.081 246 161 6 45 282 290 532 2.77e-25 109
Msa1173170 AT2G28830.1 27.273 308 198 4 46 335 185 484 1.43e-24 106
Msa1173170 AT5G09800.1 26.434 401 253 16 42 417 8 391 2.04e-23 102
Msa1173170 AT3G52450.1 25.952 420 260 12 39 413 1 414 3.78e-22 98.6
Msa1173170 AT1G29340.1 27.055 292 188 6 40 312 300 585 2.08e-20 94.4
Msa1173170 AT5G01830.1 30.244 205 125 4 44 234 273 473 3.21e-17 84.7
Msa1173170 AT4G21350.1 25.076 331 229 7 44 367 4 322 7.44e-17 82.4
Msa1173170 AT3G07360.1 28.146 302 187 10 46 331 75 362 2.60e-16 81.3
Msa1173170 AT1G67530.2 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa1173170 AT1G67530.1 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa1173170 AT1G67530.4 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa1173170 AT1G67530.3 54.545 66 30 0 46 111 273 338 1.40e-15 79.3
Msa1173170 AT1G60190.1 28.214 280 173 10 51 310 284 555 9.74e-15 77.0
Msa1173170 AT1G24330.1 51.515 66 32 0 46 111 276 341 3.43e-14 75.5
Msa1173170 AT1G24330.2 51.515 66 32 0 46 111 276 341 3.43e-14 75.5
Msa1173170 AT1G10560.1 25.538 325 198 11 49 339 292 606 6.13e-14 74.3
Msa1173170 AT3G11840.1 39.167 120 65 5 44 157 9 126 7.40e-14 73.6
Msa1173170 AT1G27910.1 51.515 66 32 0 46 111 280 345 9.14e-14 73.9
Msa1173170 AT2G23140.1 47.619 63 33 0 49 111 237 299 1.09e-12 70.5
Msa1173170 AT2G23140.2 47.619 63 33 0 49 111 234 296 1.12e-12 70.5
Msa1173170 AT2G23140.4 47.619 63 33 0 49 111 234 296 1.12e-12 70.5
Msa1173170 AT2G23140.3 47.619 63 33 0 49 111 45 107 1.26e-12 70.1
Msa1173170 AT2G23140.5 47.619 63 33 0 49 111 45 107 1.26e-12 70.1
Msa1173170 AT3G54790.2 42.647 68 39 0 45 112 202 269 2.04e-12 69.7
Msa1173170 AT3G54790.3 42.647 68 39 0 45 112 238 305 2.16e-12 69.7
Msa1173170 AT3G54790.1 42.647 68 39 0 45 112 238 305 2.16e-12 69.7
Msa1173170 AT3G02840.1 23.954 263 184 7 163 412 92 351 4.19e-12 67.8
Msa1173170 AT5G65500.2 41.096 73 43 0 43 115 721 793 3.10e-11 65.9
Msa1173170 AT5G65500.1 41.096 73 43 0 43 115 713 785 3.20e-11 65.9

Find 68 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACTCGTTATTCAAATT+TGG 0.155411 8_1:+3384921 None:intergenic
GACCAAGTGAAAACCATTTA+AGG 0.159560 8_1:+3385627 None:intergenic
TATCGGTATCATTGTGAATT+TGG 0.172886 8_1:-3385279 Msa1173170:CDS
CATCCAAATGGGATATTAAT+TGG 0.260923 8_1:-3385038 Msa1173170:CDS
TGTTTCAAGTTTGAGTCTTT+TGG 0.266950 8_1:-3385093 Msa1173170:CDS
ATAGATCCAACATCCTTAAA+TGG 0.267794 8_1:-3385640 Msa1173170:CDS
GGTTTGGTTTGTTCTTTGTT+AGG 0.271110 8_1:-3385335 Msa1173170:CDS
TCAAAGCTCTTAAGGATCTT+AGG 0.281536 8_1:-3385415 Msa1173170:CDS
GCCTTTGAAGCACATTCTTC+AGG 0.321820 8_1:+3384729 None:intergenic
AACACTTGAAGAAGGGAAAT+TGG 0.332578 8_1:-3384865 Msa1173170:CDS
GAAGATTTCTGTTTCAAAAC+AGG 0.345157 8_1:+3384651 None:intergenic
ATTGATTGAAATGTTGTTGA+TGG 0.345273 8_1:-3385147 Msa1173170:CDS
CATAACTCTTGCATTGTTGT+TGG 0.349959 8_1:+3385593 None:intergenic
GGAAAATGGCGGGGTTGGTT+TGG 0.353204 8_1:-3385351 Msa1173170:CDS
TGCATTGGTTCAAGTGAGAT+TGG 0.353424 8_1:+3385698 None:intergenic
GGATGTTCAAGGAAGAGTTT+TGG 0.360543 8_1:-3385480 Msa1173170:CDS
CAACAACAATGCAAGAGTTA+TGG 0.362659 8_1:-3385592 Msa1173170:CDS
AGACCAATTAATATCCCATT+TGG 0.368703 8_1:+3385035 None:intergenic
AAGGATGTTGGATCTATCAT+AGG 0.371646 8_1:+3385646 None:intergenic
AAATTTGAATAACGAGTGTT+TGG 0.375150 8_1:-3384919 Msa1173170:CDS
TGACCTGTGCAAAGTGTAAC+AGG 0.377472 8_1:+3385671 None:intergenic
GCATCCAGCTAAAGTTTCAT+TGG 0.383621 8_1:-3385222 Msa1173170:CDS
AGGAAAACAGTGTTGGAAAA+TGG 0.387358 8_1:-3385365 Msa1173170:CDS
TTGGTTCTCACACAAGTACT+TGG 0.388106 8_1:-3385522 Msa1173170:CDS
AACAACAATGCAAGAGTTAT+GGG 0.388335 8_1:-3385591 Msa1173170:CDS
TGAGATTAATAATCCTTTGT+TGG 0.392736 8_1:-3385840 Msa1173170:CDS
GATAGCACTTTACATATTAG+AGG 0.398032 8_1:-3384895 Msa1173170:CDS
GAGATTAATAATCCTTTGTT+GGG 0.398485 8_1:-3385839 Msa1173170:CDS
ACCACATTAGGTATAATGTT+TGG 0.400820 8_1:+3384828 None:intergenic
AAAGGCTGTGGAAGCTGGAT+TGG 0.406186 8_1:-3384712 Msa1173170:CDS
ATCAACATCTTTACCACATT+AGG 0.406347 8_1:+3384816 None:intergenic
AAGTAGAGTCAAAGCTCTTA+AGG 0.410312 8_1:-3385423 Msa1173170:CDS
TGAAAACCATTTAAGGATGT+TGG 0.416261 8_1:+3385634 None:intergenic
TTTGGTTGGATTATTGAGAT+TGG 0.418112 8_1:-3385075 Msa1173170:CDS
GCTTCAAAGGCTGTGGAAGC+TGG 0.429451 8_1:-3384717 Msa1173170:CDS
AATTGTTTGAGAGTGTTGTT+TGG 0.436978 8_1:+3385554 None:intergenic
TGAAATGTTGTTGATGGAAG+TGG 0.440393 8_1:-3385141 Msa1173170:CDS
AGAGATAAGAAACATCCAAA+TGG 0.458686 8_1:-3385050 Msa1173170:CDS
TCAAACAATTGATCTTTACT+TGG 0.459813 8_1:-3385541 Msa1173170:CDS
TTGTTTCTCATGTTTGTGCT+AGG 0.464535 8_1:-3385385 Msa1173170:CDS
AGTGGAAAGAAATGAAACTA+TGG 0.477086 8_1:-3385123 Msa1173170:CDS
GTTGTTGATATTATGAATGA+AGG 0.490566 8_1:-3385200 Msa1173170:CDS
GAGATAAGAAACATCCAAAT+GGG 0.501701 8_1:-3385049 Msa1173170:CDS
GAGACACTCAAGAAGGTAAA+GGG 0.502037 8_1:-3385449 Msa1173170:CDS
ATTGGACATATAAACACATA+AGG 0.504104 8_1:+3385716 None:intergenic
AAACAGTGTTGGAAAATGGC+GGG 0.518645 8_1:-3385361 Msa1173170:CDS
AAGAAGCTTGAGGATGTTCA+AGG 0.520273 8_1:-3385491 Msa1173170:CDS
GTGTTGGAAAATGGCGGGGT+TGG 0.525268 8_1:-3385356 Msa1173170:CDS
ACAACCAATGAAACTTTAGC+TGG 0.528214 8_1:+3385218 None:intergenic
GGAGACACTCAAGAAGGTAA+AGG 0.529677 8_1:-3385450 Msa1173170:CDS
AGTGTAACAGGCTCTTGCAT+TGG 0.532871 8_1:+3385683 None:intergenic
GGTAAAATCTCAATCAATTG+CGG 0.551711 8_1:+3384942 None:intergenic
ACCTGAAGAATGTGCTTCAA+AGG 0.554133 8_1:-3384730 Msa1173170:CDS
AGAATGTGCTTCAAAGGCTG+TGG 0.559930 8_1:-3384724 Msa1173170:CDS
TCCAAACATTATACCTAATG+TGG 0.567506 8_1:-3384829 Msa1173170:CDS
GTATTGTCAACACTTGAAGA+AGG 0.568213 8_1:-3384873 Msa1173170:CDS
GAGCCTGTTACACTTTGCAC+AGG 0.589911 8_1:-3385674 Msa1173170:CDS
AGAAGCTCTATGATAAGCAT+AGG 0.590919 8_1:-3384972 Msa1173170:CDS
TGGTTCTCACACAAGTACTT+GGG 0.592232 8_1:-3385521 Msa1173170:CDS
GATGTTTCAAAACCCAACAA+AGG 0.598829 8_1:+3385827 None:intergenic
TTGTGCTAGGAAAACAGTGT+TGG 0.603588 8_1:-3385372 Msa1173170:CDS
TATTGTCAACACTTGAAGAA+GGG 0.604875 8_1:-3384872 Msa1173170:CDS
AACATTGGAGACACTCAAGA+AGG 0.620353 8_1:-3385456 Msa1173170:CDS
AACAGTGTTGGAAAATGGCG+GGG 0.621402 8_1:-3385360 Msa1173170:CDS
GTTGTTGGTTGTGAAGCTAT+CGG 0.633853 8_1:-3385296 Msa1173170:CDS
AAAACAGTGTTGGAAAATGG+CGG 0.637218 8_1:-3385362 Msa1173170:CDS
GGGAATGAAGAAGAAGCTTG+AGG 0.650651 8_1:-3385501 Msa1173170:CDS
TTATTGCTTGTGATTCAGAG+TGG 0.747357 8_1:-3384681 Msa1173170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAGATTAATAATCCTTTGT+TGG - chr8_1:3384580-3384599 Msa1173170:CDS 25.0%
! GAGATTAATAATCCTTTGTT+GGG - chr8_1:3384581-3384600 Msa1173170:CDS 25.0%
! ATTGGACATATAAACACATA+AGG + chr8_1:3384707-3384726 None:intergenic 25.0%
! TCAAACAATTGATCTTTACT+TGG - chr8_1:3384879-3384898 Msa1173170:CDS 25.0%
! GTTGTTGATATTATGAATGA+AGG - chr8_1:3385220-3385239 Msa1173170:CDS 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - chr8_1:3385273-3385292 Msa1173170:CDS 25.0%
! AAACACTCGTTATTCAAATT+TGG + chr8_1:3385502-3385521 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - chr8_1:3385501-3385520 Msa1173170:CDS 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - chr8_1:3385650-3385669 Msa1173170:CDS 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - chr8_1:3385651-3385670 Msa1173170:CDS 25.0%
! TGAGATTAATAATCCTTTGT+TGG - chr8_1:3384580-3384599 Msa1173170:CDS 25.0%
! GAGATTAATAATCCTTTGTT+GGG - chr8_1:3384581-3384600 Msa1173170:CDS 25.0%
! ATTGGACATATAAACACATA+AGG + chr8_1:3384707-3384726 None:intergenic 25.0%
! TCAAACAATTGATCTTTACT+TGG - chr8_1:3384879-3384898 Msa1173170:CDS 25.0%
! GTTGTTGATATTATGAATGA+AGG - chr8_1:3385220-3385239 Msa1173170:CDS 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - chr8_1:3385273-3385292 Msa1173170:CDS 25.0%
! AAACACTCGTTATTCAAATT+TGG + chr8_1:3385502-3385521 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - chr8_1:3385501-3385520 Msa1173170:CDS 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - chr8_1:3385650-3385669 Msa1173170:CDS 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - chr8_1:3385651-3385670 Msa1173170:CDS 25.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - chr8_1:3384602-3384621 Msa1173170:CDS 30.0%
ATAGATCCAACATCCTTAAA+TGG - chr8_1:3384780-3384799 Msa1173170:CDS 30.0%
TGAAAACCATTTAAGGATGT+TGG + chr8_1:3384789-3384808 None:intergenic 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - chr8_1:3384791-3384810 Msa1173170:CDS 30.0%
AACAACAATGCAAGAGTTAT+GGG - chr8_1:3384829-3384848 Msa1173170:CDS 30.0%
!! AATTGTTTGAGAGTGTTGTT+TGG + chr8_1:3384869-3384888 None:intergenic 30.0%
! TCTTTTACTTCACATGTTGT+TGG - chr8_1:3385109-3385128 Msa1173170:CDS 30.0%
TATCGGTATCATTGTGAATT+TGG - chr8_1:3385141-3385160 Msa1173170:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - chr8_1:3385297-3385316 Msa1173170:CDS 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - chr8_1:3385327-3385346 Msa1173170:CDS 30.0%
TTTGGTTGGATTATTGAGAT+TGG - chr8_1:3385345-3385364 Msa1173170:CDS 30.0%
AGAGATAAGAAACATCCAAA+TGG - chr8_1:3385370-3385389 Msa1173170:CDS 30.0%
GAGATAAGAAACATCCAAAT+GGG - chr8_1:3385371-3385390 Msa1173170:CDS 30.0%
CATCCAAATGGGATATTAAT+TGG - chr8_1:3385382-3385401 Msa1173170:CDS 30.0%
AGACCAATTAATATCCCATT+TGG + chr8_1:3385388-3385407 None:intergenic 30.0%
GGTAAAATCTCAATCAATTG+CGG + chr8_1:3385481-3385500 None:intergenic 30.0%
GATAGCACTTTACATATTAG+AGG - chr8_1:3385525-3385544 Msa1173170:CDS 30.0%
TATTGTCAACACTTGAAGAA+GGG - chr8_1:3385548-3385567 Msa1173170:CDS 30.0%
TCCAAACATTATACCTAATG+TGG - chr8_1:3385591-3385610 Msa1173170:CDS 30.0%
ACCACATTAGGTATAATGTT+TGG + chr8_1:3385595-3385614 None:intergenic 30.0%
ATCAACATCTTTACCACATT+AGG + chr8_1:3385607-3385626 None:intergenic 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + chr8_1:3385772-3385791 None:intergenic 30.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - chr8_1:3384602-3384621 Msa1173170:CDS 30.0%
ATAGATCCAACATCCTTAAA+TGG - chr8_1:3384780-3384799 Msa1173170:CDS 30.0%
TGAAAACCATTTAAGGATGT+TGG + chr8_1:3384789-3384808 None:intergenic 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - chr8_1:3384791-3384810 Msa1173170:CDS 30.0%
AACAACAATGCAAGAGTTAT+GGG - chr8_1:3384829-3384848 Msa1173170:CDS 30.0%
!! AATTGTTTGAGAGTGTTGTT+TGG + chr8_1:3384869-3384888 None:intergenic 30.0%
! TCTTTTACTTCACATGTTGT+TGG - chr8_1:3385109-3385128 Msa1173170:CDS 30.0%
TATCGGTATCATTGTGAATT+TGG - chr8_1:3385141-3385160 Msa1173170:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - chr8_1:3385297-3385316 Msa1173170:CDS 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - chr8_1:3385327-3385346 Msa1173170:CDS 30.0%
TTTGGTTGGATTATTGAGAT+TGG - chr8_1:3385345-3385364 Msa1173170:CDS 30.0%
AGAGATAAGAAACATCCAAA+TGG - chr8_1:3385370-3385389 Msa1173170:CDS 30.0%
GAGATAAGAAACATCCAAAT+GGG - chr8_1:3385371-3385390 Msa1173170:CDS 30.0%
CATCCAAATGGGATATTAAT+TGG - chr8_1:3385382-3385401 Msa1173170:CDS 30.0%
AGACCAATTAATATCCCATT+TGG + chr8_1:3385388-3385407 None:intergenic 30.0%
GGTAAAATCTCAATCAATTG+CGG + chr8_1:3385481-3385500 None:intergenic 30.0%
GATAGCACTTTACATATTAG+AGG - chr8_1:3385525-3385544 Msa1173170:CDS 30.0%
TATTGTCAACACTTGAAGAA+GGG - chr8_1:3385548-3385567 Msa1173170:CDS 30.0%
TCCAAACATTATACCTAATG+TGG - chr8_1:3385591-3385610 Msa1173170:CDS 30.0%
ACCACATTAGGTATAATGTT+TGG + chr8_1:3385595-3385614 None:intergenic 30.0%
ATCAACATCTTTACCACATT+AGG + chr8_1:3385607-3385626 None:intergenic 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + chr8_1:3385772-3385791 None:intergenic 30.0%
GATGTTTCAAAACCCAACAA+AGG + chr8_1:3384596-3384615 None:intergenic 35.0%
AAGGATGTTGGATCTATCAT+AGG + chr8_1:3384777-3384796 None:intergenic 35.0%
GACCAAGTGAAAACCATTTA+AGG + chr8_1:3384796-3384815 None:intergenic 35.0%
CATAACTCTTGCATTGTTGT+TGG + chr8_1:3384830-3384849 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - chr8_1:3384828-3384847 Msa1173170:CDS 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - chr8_1:3384949-3384968 Msa1173170:CDS 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - chr8_1:3384997-3385016 Msa1173170:CDS 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - chr8_1:3385005-3385024 Msa1173170:CDS 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - chr8_1:3385035-3385054 Msa1173170:CDS 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - chr8_1:3385055-3385074 Msa1173170:CDS 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - chr8_1:3385058-3385077 Msa1173170:CDS 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - chr8_1:3385085-3385104 Msa1173170:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + chr8_1:3385205-3385224 None:intergenic 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - chr8_1:3385279-3385298 Msa1173170:CDS 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - chr8_1:3385331-3385350 Msa1173170:CDS 35.0%
AGAAGCTCTATGATAAGCAT+AGG - chr8_1:3385448-3385467 Msa1173170:CDS 35.0%
GTATTGTCAACACTTGAAGA+AGG - chr8_1:3385547-3385566 Msa1173170:CDS 35.0%
AACACTTGAAGAAGGGAAAT+TGG - chr8_1:3385555-3385574 Msa1173170:CDS 35.0%
TTATTGCTTGTGATTCAGAG+TGG - chr8_1:3385739-3385758 Msa1173170:CDS 35.0%
GATGTTTCAAAACCCAACAA+AGG + chr8_1:3384596-3384615 None:intergenic 35.0%
AAGGATGTTGGATCTATCAT+AGG + chr8_1:3384777-3384796 None:intergenic 35.0%
GACCAAGTGAAAACCATTTA+AGG + chr8_1:3384796-3384815 None:intergenic 35.0%
CATAACTCTTGCATTGTTGT+TGG + chr8_1:3384830-3384849 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - chr8_1:3384828-3384847 Msa1173170:CDS 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - chr8_1:3384949-3384968 Msa1173170:CDS 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - chr8_1:3384997-3385016 Msa1173170:CDS 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - chr8_1:3385005-3385024 Msa1173170:CDS 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - chr8_1:3385035-3385054 Msa1173170:CDS 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - chr8_1:3385055-3385074 Msa1173170:CDS 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - chr8_1:3385058-3385077 Msa1173170:CDS 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - chr8_1:3385085-3385104 Msa1173170:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + chr8_1:3385205-3385224 None:intergenic 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - chr8_1:3385279-3385298 Msa1173170:CDS 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - chr8_1:3385331-3385350 Msa1173170:CDS 35.0%
AGAAGCTCTATGATAAGCAT+AGG - chr8_1:3385448-3385467 Msa1173170:CDS 35.0%
GTATTGTCAACACTTGAAGA+AGG - chr8_1:3385547-3385566 Msa1173170:CDS 35.0%
AACACTTGAAGAAGGGAAAT+TGG - chr8_1:3385555-3385574 Msa1173170:CDS 35.0%
TTATTGCTTGTGATTCAGAG+TGG - chr8_1:3385739-3385758 Msa1173170:CDS 35.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + chr8_1:3384725-3384744 None:intergenic 40.0%
! TTGGTTCTCACACAAGTACT+TGG - chr8_1:3384898-3384917 Msa1173170:CDS 40.0%
TGGTTCTCACACAAGTACTT+GGG - chr8_1:3384899-3384918 Msa1173170:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - chr8_1:3384929-3384948 Msa1173170:CDS 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - chr8_1:3384940-3384959 Msa1173170:CDS 40.0%
AACATTGGAGACACTCAAGA+AGG - chr8_1:3384964-3384983 Msa1173170:CDS 40.0%
GAGACACTCAAGAAGGTAAA+GGG - chr8_1:3384971-3384990 Msa1173170:CDS 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - chr8_1:3385048-3385067 Msa1173170:CDS 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - chr8_1:3385059-3385078 Msa1173170:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - chr8_1:3385124-3385143 Msa1173170:CDS 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - chr8_1:3385198-3385217 Msa1173170:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - chr8_1:3385690-3385709 Msa1173170:CDS 40.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + chr8_1:3384725-3384744 None:intergenic 40.0%
! TTGGTTCTCACACAAGTACT+TGG - chr8_1:3384898-3384917 Msa1173170:CDS 40.0%
TGGTTCTCACACAAGTACTT+GGG - chr8_1:3384899-3384918 Msa1173170:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - chr8_1:3384929-3384948 Msa1173170:CDS 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - chr8_1:3384940-3384959 Msa1173170:CDS 40.0%
AACATTGGAGACACTCAAGA+AGG - chr8_1:3384964-3384983 Msa1173170:CDS 40.0%
GAGACACTCAAGAAGGTAAA+GGG - chr8_1:3384971-3384990 Msa1173170:CDS 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - chr8_1:3385048-3385067 Msa1173170:CDS 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - chr8_1:3385059-3385078 Msa1173170:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - chr8_1:3385124-3385143 Msa1173170:CDS 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - chr8_1:3385198-3385217 Msa1173170:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - chr8_1:3385690-3385709 Msa1173170:CDS 40.0%
AGTGTAACAGGCTCTTGCAT+TGG + chr8_1:3384740-3384759 None:intergenic 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + chr8_1:3384752-3384771 None:intergenic 45.0%
GGGAATGAAGAAGAAGCTTG+AGG - chr8_1:3384919-3384938 Msa1173170:CDS 45.0%
GGAGACACTCAAGAAGGTAA+AGG - chr8_1:3384970-3384989 Msa1173170:CDS 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - chr8_1:3385060-3385079 Msa1173170:CDS 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + chr8_1:3385694-3385713 None:intergenic 45.0%
AGAATGTGCTTCAAAGGCTG+TGG - chr8_1:3385696-3385715 Msa1173170:CDS 45.0%
AGTGTAACAGGCTCTTGCAT+TGG + chr8_1:3384740-3384759 None:intergenic 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + chr8_1:3384752-3384771 None:intergenic 45.0%
GGGAATGAAGAAGAAGCTTG+AGG - chr8_1:3384919-3384938 Msa1173170:CDS 45.0%
GGAGACACTCAAGAAGGTAA+AGG - chr8_1:3384970-3384989 Msa1173170:CDS 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - chr8_1:3385060-3385079 Msa1173170:CDS 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + chr8_1:3385694-3385713 None:intergenic 45.0%
AGAATGTGCTTCAAAGGCTG+TGG - chr8_1:3385696-3385715 Msa1173170:CDS 45.0%
GAGCCTGTTACACTTTGCAC+AGG - chr8_1:3384746-3384765 Msa1173170:CDS 50.0%
AAAGGCTGTGGAAGCTGGAT+TGG - chr8_1:3385708-3385727 Msa1173170:CDS 50.0%
GAGCCTGTTACACTTTGCAC+AGG - chr8_1:3384746-3384765 Msa1173170:CDS 50.0%
AAAGGCTGTGGAAGCTGGAT+TGG - chr8_1:3385708-3385727 Msa1173170:CDS 50.0%
! GTGTTGGAAAATGGCGGGGT+TGG - chr8_1:3385064-3385083 Msa1173170:CDS 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - chr8_1:3385069-3385088 Msa1173170:CDS 55.0%
GCTTCAAAGGCTGTGGAAGC+TGG - chr8_1:3385703-3385722 Msa1173170:CDS 55.0%
! GTGTTGGAAAATGGCGGGGT+TGG - chr8_1:3385064-3385083 Msa1173170:CDS 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - chr8_1:3385069-3385088 Msa1173170:CDS 55.0%
GCTTCAAAGGCTGTGGAAGC+TGG - chr8_1:3385703-3385722 Msa1173170:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 3384569 3385873 3384569 ID=Msa1173170;Name=Msa1173170
chr8_1 mRNA 3384569 3385873 3384569 ID=Msa1173170-mRNA-1;Parent=Msa1173170;Name=Msa1173170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|434
chr8_1 exon 3384569 3385873 3384569 ID=Msa1173170-mRNA-1:exon:1214;Parent=Msa1173170-mRNA-1
chr8_1 CDS 3384569 3385873 3384569 ID=Msa1173170-mRNA-1:cds;Parent=Msa1173170-mRNA-1
Gene Sequence

>Msa1173170

ATGCTTTCATATGAGATTAATAATCCTTTGTTGGGTTTTGAAACATCTTTCAAAGGTTGTTTTTTTAGTGTCTTAGACACTGAAAAAATAGATCTCAAGTTGATAATTGAAGAGCTTGATTCAATTGATGATGTTCCTTATGTGTTTATATGTCCAATCTCACTTGAACCAATGCAAGAGCCTGTTACACTTTGCACAGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGTTATGGGATGATTCAATCACTCCAAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAAGTACTTGGGAATGAAGAAGAAGCTTGAGGATGTTCAAGGAAGAGTTTTGGAAACATTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACAGTGTTGGAAAATGGCGGGGTTGGTTTGGTTTGTTCTTTGTTAGGTTCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATCGGTATCATTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAAGTATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATTATGAATGAAGGAACTACTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAAGTGGAAAGAAATGAAACTATGGTTGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGATTATTGAGATTGGTGAGAGATAAGAAACATCCAAATGGGATATTAATTGGTCTCACATTGCTTAAAAAAGTATTATGTTGTCATGAATCAATTAGAAGCTCTATGATAAGCATAGGAGCAATTCCGCAATTGATTGAGATTTTACCAAATTTGAATAACGAGTGTTTGGAGATAGCACTTTACATATTAGAGGTATTGTCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCTAATGTGGTAAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCACTGTCAATTTTATGGGCTATTTACAAGCTTGCACCTGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAATTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAATCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTTATTTCTAAGTGTATGCTTACTACAACAATACAATGA

Protein sequence

>Msa1173170

MLSYEINNPLLGFETSFKGCFFSVLDTEKIDLKLIIEELDSIDDVPYVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHKYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTVLENGGVGLVCSLLGSFTSHVVGCEAIGIIVNLDLSLELKRKYLMHPAKVSLVVDIMNEGTTETKMNCAKLIEMLLMEVERNETMVEIVSSLSLLVGLLRLVRDKKHPNGILIGLTLLKKVLCCHESIRSSMISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSVNYSTSIFISKCMLTTTIQ*