Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529650 | XP_003604146.2 | 99.264 | 679 | 5 | 0 | 2 | 680 | 86 | 764 | 0.0 | 1383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529650 | sp|Q9LTB0|EX84B_ARATH | 75.994 | 679 | 155 | 5 | 2 | 679 | 80 | 751 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529650 | G7JVK6 | 99.264 | 679 | 5 | 0 | 2 | 680 | 86 | 764 | 0.0 | 1383 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0529650 | 0.847451 | 1.147084e-59 | -8.615850e-47 |
| Msa0074860 | Msa0529650 | -0.807497 | 4.910899e-50 | -8.615850e-47 |
| Msa0075990 | Msa0529650 | -0.803813 | 2.914061e-49 | -8.615850e-47 |
| Msa0087550 | Msa0529650 | 0.810820 | 9.530248e-51 | -8.615850e-47 |
| Msa0092220 | Msa0529650 | 0.840059 | 1.092082e-57 | -8.615850e-47 |
| Msa0105590 | Msa0529650 | -0.804757 | 1.852880e-49 | -8.615850e-47 |
| Msa0134270 | Msa0529650 | 0.814819 | 1.268670e-51 | -8.615850e-47 |
| Msa0177320 | Msa0529650 | 0.850606 | 1.523448e-60 | -8.615850e-47 |
| Msa0180100 | Msa0529650 | -0.804364 | 2.238766e-49 | -8.615850e-47 |
| Msa0216150 | Msa0529650 | -0.827316 | 1.673559e-54 | -8.615850e-47 |
| Msa0225070 | Msa0529650 | -0.802522 | 5.390369e-49 | -8.615850e-47 |
| Msa0368620 | Msa0529650 | 0.812898 | 3.363117e-51 | -8.615850e-47 |
| Msa0382020 | Msa0529650 | -0.811012 | 8.661646e-51 | -8.615850e-47 |
| Msa0389710 | Msa0529650 | 0.816826 | 4.527576e-52 | -8.615850e-47 |
| Msa0403740 | Msa0529650 | -0.822411 | 2.402909e-53 | -8.615850e-47 |
| Msa0412580 | Msa0529650 | -0.804072 | 2.574309e-49 | -8.615850e-47 |
| Msa0427560 | Msa0529650 | 0.818197 | 2.222396e-52 | -8.615850e-47 |
| Msa0428210 | Msa0529650 | 0.815011 | 1.150194e-51 | -8.615850e-47 |
| Msa0456450 | Msa0529650 | -0.834378 | 3.102549e-56 | -8.615850e-47 |
| Msa0457070 | Msa0529650 | -0.819263 | 1.273320e-52 | -8.615850e-47 |
| Msa0476600 | Msa0529650 | -0.831116 | 2.002838e-55 | -8.615850e-47 |
| Msa0480260 | Msa0529650 | 0.810038 | 1.405884e-50 | -8.615850e-47 |
| Msa0255770 | Msa0529650 | -0.805878 | 1.078932e-49 | -8.615850e-47 |
| Msa0266140 | Msa0529650 | -0.812114 | 4.988754e-51 | -8.615850e-47 |
| Msa0304060 | Msa0529650 | -0.812180 | 4.827337e-51 | -8.615850e-47 |
| Msa0330240 | Msa0529650 | -0.807544 | 4.799741e-50 | -8.615850e-47 |
| Msa0333350 | Msa0529650 | -0.804454 | 2.143421e-49 | -8.615850e-47 |
| Msa0364030 | Msa0529650 | -0.820403 | 6.988795e-53 | -8.615850e-47 |
| Msa0508160 | Msa0529650 | 0.825832 | 3.780643e-54 | -8.615850e-47 |
| Msa0518190 | Msa0529650 | 0.810154 | 1.327108e-50 | -8.615850e-47 |
| Msa0524260 | Msa0529650 | 0.812220 | 4.729617e-51 | -8.615850e-47 |
| Msa0524370 | Msa0529650 | 0.807779 | 4.279377e-50 | -8.615850e-47 |
| Msa0529650 | Msa0529670 | 0.822292 | 2.561286e-53 | -8.615850e-47 |
| Msa0529650 | Msa0572730 | -0.831739 | 1.407155e-55 | -8.615850e-47 |
| Msa0529650 | Msa0610700 | -0.807279 | 5.462152e-50 | -8.615850e-47 |
| Msa0529650 | Msa0614290 | 0.824859 | 6.423184e-54 | -8.615850e-47 |
| Msa0529650 | Msa0615780 | 0.821568 | 3.768451e-53 | -8.615850e-47 |
| Msa0529650 | Msa0628880 | 0.802200 | 6.280940e-49 | -8.615850e-47 |
| Msa0529650 | Msa0638820 | 0.806812 | 6.858489e-50 | -8.615850e-47 |
| Msa0529650 | Msa0655200 | 0.806821 | 6.829428e-50 | -8.615850e-47 |
| Msa0529650 | Msa0660650 | 0.819774 | 9.731463e-53 | -8.615850e-47 |
| Msa0529650 | Msa0695140 | 0.845688 | 3.475364e-59 | -8.615850e-47 |
| Msa0529650 | Msa0702690 | -0.802322 | 5.926337e-49 | -8.615850e-47 |
| Msa0529650 | Msa0753270 | 0.804657 | 1.944198e-49 | -8.615850e-47 |
| Msa0529650 | Msa0788160 | -0.811695 | 6.156518e-51 | -8.615850e-47 |
| Msa0529650 | Msa0829250 | -0.801784 | 7.646200e-49 | -8.615850e-47 |
| Msa0529650 | Msa0861400 | -0.802298 | 5.996527e-49 | -8.615850e-47 |
| Msa0529650 | Msa0864530 | -0.811308 | 7.470399e-51 | -8.615850e-47 |
| Msa0529650 | Msa0868610 | 0.803030 | 4.234784e-49 | -8.615850e-47 |
| Msa0529650 | Msa0928060 | -0.811123 | 8.194093e-51 | -8.615850e-47 |
| Msa0529650 | Msa0947550 | -0.803680 | 3.106096e-49 | -8.615850e-47 |
| Msa0529650 | Msa0998660 | -0.820202 | 7.767231e-53 | -8.615850e-47 |
| Msa0529650 | Msa1004300 | -0.804953 | 1.686523e-49 | -8.615850e-47 |
| Msa0529650 | Msa1036260 | -0.803778 | 2.963413e-49 | -8.615850e-47 |
| Msa0529650 | Msa1041250 | 0.800227 | 1.591279e-48 | -8.615850e-47 |
| Msa0529650 | Msa1088000 | -0.809010 | 2.336926e-50 | -8.615850e-47 |
| Msa0529650 | Msa1121720 | -0.814913 | 1.209384e-51 | -8.615850e-47 |
| Msa0529650 | Msa1190610 | 0.801094 | 1.058885e-48 | -8.615850e-47 |
| Msa0529650 | Msa1205270 | -0.814030 | 1.896018e-51 | -8.615850e-47 |
| Msa0529650 | Msa1297220 | -0.818143 | 2.285713e-52 | -8.615850e-47 |
| Msa0529650 | Msa1304790 | 0.811049 | 8.503661e-51 | -8.615850e-47 |
| Msa0529650 | Msa1315880 | -0.800219 | 1.597292e-48 | -8.615850e-47 |
| Msa0529650 | Msa1323260 | -0.807826 | 4.181619e-50 | -8.615850e-47 |
| Msa0529650 | Msa1342360 | -0.834377 | 3.104809e-56 | -8.615850e-47 |
| Msa0529650 | Msa1343450 | -0.815303 | 9.905435e-52 | -8.615850e-47 |
| Msa0529650 | Msa1350580 | -0.811032 | 8.576090e-51 | -8.615850e-47 |
| Msa0529650 | Msa1350590 | -0.800297 | 1.539903e-48 | -8.615850e-47 |
| Msa0529650 | Msa1350700 | 0.820140 | 8.025276e-53 | -8.615850e-47 |
| Msa0529650 | Msa1356100 | -0.814350 | 1.611409e-51 | -8.615850e-47 |
| Msa0529650 | Msa1360260 | 0.805619 | 1.223253e-49 | -8.615850e-47 |
| Msa0529650 | Msa1364970 | 0.807408 | 5.130252e-50 | -8.615850e-47 |
| Msa0529650 | Msa1366480 | 0.801302 | 9.598963e-49 | -8.615850e-47 |
| Msa0529650 | Msa1367460 | 0.815145 | 1.073926e-51 | -8.615850e-47 |
| Msa0529650 | Msa1377980 | -0.834350 | 3.153748e-56 | -8.615850e-47 |
| Msa0529650 | Msa1395380 | -0.801477 | 8.840462e-49 | -8.615850e-47 |
| Msa0529650 | Msa1408280 | -0.831928 | 1.263919e-55 | -8.615850e-47 |
| Msa0529650 | Msa1411370 | 0.806462 | 8.132013e-50 | -8.615850e-47 |
| Msa0529650 | Msa1413150 | 0.800349 | 1.502488e-48 | -8.615850e-47 |
| Msa0529650 | Msa1414500 | 0.807317 | 5.362360e-50 | -8.615850e-47 |
| Msa0529650 | Msa1414780 | -0.805809 | 1.115577e-49 | -8.615850e-47 |
| Msa0529650 | Msa1417600 | 0.813225 | 2.850742e-51 | -8.615850e-47 |
| Msa0529650 | Msa1435550 | 0.812212 | 4.748806e-51 | -8.615850e-47 |
| Msa0529650 | Msa1439860 | 0.803664 | 3.129033e-49 | -8.615850e-47 |
| Msa0529650 | Msa1453430 | 0.815146 | 1.073629e-51 | -8.615850e-47 |
| Msa0529650 | Msa1454300 | -0.801916 | 7.182709e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529650 | MtrunA17_Chr4g0000541 | 99.264 | 679 | 5 | 0 | 2 | 680 | 86 | 764 | 0.0 | 1383 |
| Msa0529650 | MtrunA17_Chr6g0471001 | 56.848 | 679 | 269 | 10 | 2 | 668 | 94 | 760 | 0.0 | 748 |
| Msa0529650 | MtrunA17_Chr1g0210011 | 57.617 | 663 | 254 | 10 | 3 | 647 | 4 | 657 | 0.0 | 692 |
| Msa0529650 | MtrunA17_Chr4g0043561 | 35.258 | 658 | 403 | 9 | 2 | 646 | 64 | 711 | 1.86e-120 | 377 |
| Msa0529650 | MtrunA17_Chr1g0183451 | 24.733 | 655 | 452 | 14 | 2 | 646 | 98 | 721 | 4.82e-54 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529650 | AT5G49830.1 | 75.994 | 679 | 155 | 5 | 2 | 679 | 80 | 751 | 0.0 | 969 |
| Msa0529650 | AT5G49830.2 | 75.994 | 679 | 155 | 5 | 2 | 679 | 142 | 813 | 0.0 | 968 |
| Msa0529650 | AT5G49830.3 | 75.994 | 679 | 155 | 5 | 2 | 679 | 111 | 782 | 0.0 | 968 |
| Msa0529650 | AT1G10385.1 | 62.222 | 675 | 245 | 7 | 2 | 673 | 86 | 753 | 0.0 | 811 |
| Msa0529650 | AT1G10180.1 | 34.823 | 649 | 407 | 7 | 2 | 646 | 64 | 700 | 1.25e-117 | 370 |
Find 149 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAAGCTTTGAGGATTC+TGG | 0.189121 | 4_1:-3387940 | Msa0529650:CDS |
| TCTACGGTTATCATCCTTAT+AGG | 0.199977 | 4_1:+3387792 | None:intergenic |
| CCTTATAGGGATCTTGGTTT+AGG | 0.220695 | 4_1:+3387806 | None:intergenic |
| AACAGAAGCATTTGCTCTTC+TGG | 0.230386 | 4_1:-3388929 | Msa0529650:CDS |
| TCTTCTTCCTCCATTGATTC+TGG | 0.235573 | 4_1:+3387958 | None:intergenic |
| AGTTGAGTTTCCTGATCTTT+TGG | 0.240158 | 4_1:-3389415 | Msa0529650:CDS |
| AAACATATCTGCTGCTATAT+TGG | 0.247414 | 4_1:+3386393 | None:intergenic |
| CTCTCCCCGTTTATTTCCTT+TGG | 0.259208 | 4_1:+3384654 | None:intergenic |
| TTTCAGAAGATCAGAGCTTT+TGG | 0.266073 | 4_1:-3386306 | Msa0529650:CDS |
| CTTATAGGGATCTTGGTTTA+GGG | 0.280687 | 4_1:+3387807 | None:intergenic |
| ATTGGACTGTACTAATTTAC+AGG | 0.283078 | 4_1:+3384544 | None:intergenic |
| CTCCTCCATTCCCGTTGTTC+AGG | 0.299705 | 4_1:+3387742 | None:intergenic |
| TGCCCATCGCTTCAATTTGA+TGG | 0.308622 | 4_1:-3388608 | Msa0529650:CDS |
| TCGCTTCAATTTGATGGTTC+AGG | 0.316321 | 4_1:-3388602 | Msa0529650:intron |
| CTATGGCTGCTGCTGATGAT+TGG | 0.319105 | 4_1:-3388705 | Msa0529650:CDS |
| GCTAGCTAATGCCTCATTAC+TGG | 0.329413 | 4_1:-3387869 | Msa0529650:CDS |
| GAGGAAGGGCCAAGGCCTTT+AGG | 0.330967 | 4_1:-3386274 | Msa0529650:CDS |
| CCAATCTATCATGAAATTAC+TGG | 0.335302 | 4_1:-3384526 | Msa0529650:three_prime_UTR |
| TCATTAAACCATTCATCTTC+AGG | 0.346274 | 4_1:+3384714 | None:intergenic |
| CTACGGTTATCATCCTTATA+GGG | 0.350038 | 4_1:+3387793 | None:intergenic |
| GTTTAGGGAGGAGAGCTTCA+TGG | 0.358778 | 4_1:+3387822 | None:intergenic |
| AGCTGACATGTATATAAGTA+TGG | 0.372642 | 4_1:-3387623 | Msa0529650:CDS |
| TAGCTAGCAGTGCAATCTGC+TGG | 0.380139 | 4_1:+3387884 | None:intergenic |
| TATCATCCTTATAGGGATCT+TGG | 0.392742 | 4_1:+3387800 | None:intergenic |
| AATTGCAAAACATACCTATA+CGG | 0.393334 | 4_1:+3384867 | None:intergenic |
| CCTAAACCAAGATCCCTATA+AGG | 0.394844 | 4_1:-3387806 | Msa0529650:CDS |
| GAATTGTGAATGAAATTATC+AGG | 0.397966 | 4_1:-3384926 | Msa0529650:CDS |
| CCAGTAATTTCATGATAGAT+TGG | 0.398861 | 4_1:+3384526 | None:intergenic |
| CGGCCGTCAAACACCTCATA+TGG | 0.413368 | 4_1:-3389081 | Msa0529650:CDS |
| TACTGCAGCTCTAGCACAAC+TGG | 0.415141 | 4_1:-3389049 | Msa0529650:CDS |
| TATGGCTGCTGCTGATGATT+GGG | 0.419906 | 4_1:-3388704 | Msa0529650:CDS |
| AGGTTGCTTGAGTGGATAGT+AGG | 0.422298 | 4_1:+3389562 | None:intergenic |
| ATGTTAATTAACGCAATAAT+CGG | 0.422821 | 4_1:+3384503 | None:intergenic |
| CCAAGGCCTTTAGGTCCTCT+TGG | 0.424024 | 4_1:-3386265 | Msa0529650:CDS |
| GGAAAACCAAAGGAAATAAA+CGG | 0.424170 | 4_1:-3384660 | Msa0529650:CDS |
| AGTTCAGATCCACGGGTAGA+AGG | 0.425091 | 4_1:+3389210 | None:intergenic |
| AATCTGCTGGGCTTCAGTTT+CGG | 0.426706 | 4_1:+3387897 | None:intergenic |
| TGAAAGCTCACCTTCTAAAT+CGG | 0.432039 | 4_1:+3389596 | None:intergenic |
| GAAAACCAAAGGAAATAAAC+GGG | 0.435327 | 4_1:-3384659 | Msa0529650:CDS |
| GCTTATACAGGACTTCTTTG+AGG | 0.435586 | 4_1:-3388079 | Msa0529650:intron |
| AGCAACCTTGATACATGGTT+TGG | 0.436211 | 4_1:-3389547 | Msa0529650:CDS |
| CATATCCTCCTAATGCTAAT+CGG | 0.438507 | 4_1:-3388675 | Msa0529650:CDS |
| GCCTTTCTGTGGTTCTTCTA+CGG | 0.438652 | 4_1:+3387776 | None:intergenic |
| CATTTGCTCTTCTGGTGAAA+AGG | 0.441118 | 4_1:-3388921 | Msa0529650:CDS |
| CCGGTCTGCCGATTAGCATT+AGG | 0.441791 | 4_1:+3388667 | None:intergenic |
| AAATCGTCATCCTGAACAAC+GGG | 0.443953 | 4_1:-3387752 | Msa0529650:CDS |
| AAGGAGATATCCGATTTAGA+AGG | 0.455997 | 4_1:-3389606 | Msa0529650:CDS |
| AGGTCCTCTTGGTCTACAAC+AGG | 0.457183 | 4_1:-3386254 | Msa0529650:intron |
| TGAAATATGTCAAGATGCTA+TGG | 0.457337 | 4_1:-3384694 | Msa0529650:CDS |
| GACTCGTGGGTTCAGTTGAC+AGG | 0.457851 | 4_1:-3387717 | Msa0529650:CDS |
| ACAAGCTGCAAGTGACTCAT+TGG | 0.462838 | 4_1:-3389010 | Msa0529650:CDS |
| AAAAGCACTACCAGAATCAA+TGG | 0.468783 | 4_1:-3387968 | Msa0529650:CDS |
| CCAAGAGGACCTAAAGGCCT+TGG | 0.469828 | 4_1:+3386265 | None:intergenic |
| ATAGCAGCAGATATGTTTGT+AGG | 0.476239 | 4_1:-3386388 | Msa0529650:CDS |
| CAACAGGGATGGATCCGTAT+AGG | 0.477278 | 4_1:-3384881 | Msa0529650:intron |
| AAATATCAGACCTGGACAAA+TGG | 0.478669 | 4_1:-3389440 | Msa0529650:CDS |
| GATGCTATGGAAAGATTAAG+TGG | 0.486477 | 4_1:-3384681 | Msa0529650:CDS |
| AGCTAGCAGTGCAATCTGCT+GGG | 0.487168 | 4_1:+3387885 | None:intergenic |
| GCTTTGGCCGCTCTTGATGA+AGG | 0.487852 | 4_1:-3389360 | Msa0529650:CDS |
| CAAACGCAAGCCAAATTTGA+CGG | 0.488013 | 4_1:+3384360 | None:intergenic |
| CCTCCATATGAGGTGTTTGA+CGG | 0.488508 | 4_1:+3389078 | None:intergenic |
| TTGATACATGGTTTGGCCGA+TGG | 0.489371 | 4_1:-3389540 | Msa0529650:CDS |
| ACCTCTGCTTAGTATGCAGT+TGG | 0.491714 | 4_1:-3388049 | Msa0529650:CDS |
| AGCAGATATGTTTGTAGGGA+GGG | 0.495602 | 4_1:-3386383 | Msa0529650:CDS |
| ACAAGAGAGTACTGCTGCTA+TGG | 0.495618 | 4_1:-3388722 | Msa0529650:CDS |
| TTCTAAATCGGATATCTCCT+TGG | 0.496112 | 4_1:+3389608 | None:intergenic |
| TGCAGAGACAGAAGTAAAGA+TGG | 0.497612 | 4_1:+3389294 | None:intergenic |
| AAGAGAACATCCAAAAGATC+AGG | 0.497714 | 4_1:+3389405 | None:intergenic |
| TTGGCTTCATCAGCAGCTGC+AGG | 0.498943 | 4_1:-3388892 | Msa0529650:CDS |
| GGAGGAAGAAGAAAGCTTTG+AGG | 0.502847 | 4_1:-3387947 | Msa0529650:CDS |
| AAGGCGAGTAGAAGAAGCTT+TGG | 0.503692 | 4_1:-3389376 | Msa0529650:CDS |
| AGTATATGCTCCTCCATATG+AGG | 0.506025 | 4_1:+3389068 | None:intergenic |
| TGGATGTTCTCTTGGCTGAA+AGG | 0.507358 | 4_1:-3389395 | Msa0529650:CDS |
| GCAGTTGGGAGGACAAGCTC+TGG | 0.512635 | 4_1:-3388034 | Msa0529650:CDS |
| ATTATTGCGTTAATTAACAT+TGG | 0.513415 | 4_1:-3384500 | Msa0529650:three_prime_UTR |
| TTTCATAAAACTGAACAGAA+TGG | 0.516066 | 4_1:-3386416 | Msa0529650:CDS |
| GTCATCCTGAACAACGGGAA+TGG | 0.517673 | 4_1:-3387747 | Msa0529650:CDS |
| TTGAAATGCTGTTGTACTAC+CGG | 0.521142 | 4_1:+3388648 | None:intergenic |
| GAAATGCGGATGAAGTTGAA+TGG | 0.522687 | 4_1:-3387597 | Msa0529650:CDS |
| GAACCATCAAATTGAAGCGA+TGG | 0.527818 | 4_1:+3388605 | None:intergenic |
| AAACGCAAGCCAAATTTGAC+GGG | 0.528414 | 4_1:+3384361 | None:intergenic |
| GAGTGTGTTCAAATAGCATT+GGG | 0.528713 | 4_1:-3388850 | Msa0529650:CDS |
| TCTGGTGAAAAGGCATGCAT+TGG | 0.529675 | 4_1:-3388911 | Msa0529650:CDS |
| ATGTATCAAGGTTGCTTGAG+TGG | 0.531435 | 4_1:+3389554 | None:intergenic |
| TTCTTCTGAACTTGTGATGT+GGG | 0.533142 | 4_1:-3388962 | Msa0529650:CDS |
| TGACAAATACCGACCGTTGG+AGG | 0.534564 | 4_1:+3384962 | None:intergenic |
| CAGGACTTCTTTGAGGATGT+AGG | 0.541656 | 4_1:-3388072 | Msa0529650:CDS |
| ATTCTTCTGAACTTGTGATG+TGG | 0.543682 | 4_1:-3388963 | Msa0529650:CDS |
| TAGCAGCAGATATGTTTGTA+GGG | 0.544112 | 4_1:-3386387 | Msa0529650:CDS |
| ATCGGCCAAACCATGTATCA+AGG | 0.549441 | 4_1:+3389542 | None:intergenic |
| AGTATAACATGCAAAGTCTC+CGG | 0.553019 | 4_1:-3389101 | Msa0529650:CDS |
| ACTCAAGCAACCTTGATACA+TGG | 0.553619 | 4_1:-3389552 | Msa0529650:CDS |
| TAAATGTCATAGAACTTCCA+AGG | 0.554039 | 4_1:-3389625 | None:intergenic |
| AGTGGATAGTAGGTTTCTGA+TGG | 0.555242 | 4_1:+3389572 | None:intergenic |
| TTGGACTGTACTAATTTACA+GGG | 0.560286 | 4_1:+3384545 | None:intergenic |
| GACATGTATATAAGTATGGA+AGG | 0.560326 | 4_1:-3387619 | Msa0529650:CDS |
| TGGAAACAAAATTGTACGAA+TGG | 0.565828 | 4_1:-3387920 | Msa0529650:CDS |
| CATATGAGGTGTTTGACGGC+CGG | 0.569334 | 4_1:+3389082 | None:intergenic |
| AACCATCAAATTGAAGCGAT+GGG | 0.570523 | 4_1:+3388606 | None:intergenic |
| GGAGTGTGTTCAAATAGCAT+TGG | 0.572465 | 4_1:-3388851 | Msa0529650:CDS |
| TGCACGAAGTTCAGATCCAC+GGG | 0.573946 | 4_1:+3389203 | None:intergenic |
| ATGATATTGAGGAAGGGCCA+AGG | 0.574464 | 4_1:-3386282 | Msa0529650:CDS |
| CCTAATGCTAATCGGCAGAC+CGG | 0.576241 | 4_1:-3388667 | Msa0529650:CDS |
| TTATCGATATCCGATTCTGA+TGG | 0.583099 | 4_1:-3389501 | Msa0529650:CDS |
| TGTAGACCAAGAGGACCTAA+AGG | 0.584749 | 4_1:+3386259 | None:intergenic |
| GAGAGCTTCATGGCTGCGCG+TGG | 0.585405 | 4_1:+3387832 | None:intergenic |
| TCTAATGCTTGTTCAACACT+AGG | 0.587244 | 4_1:+3388763 | None:intergenic |
| TTGGGAGGACAAGCTCTGGA+AGG | 0.588760 | 4_1:-3388030 | Msa0529650:CDS |
| CCTCTGCTTAGTATGCAGTT+GGG | 0.589651 | 4_1:-3388048 | Msa0529650:CDS |
| GTGCAGAGACAGATGCAGTA+GGG | 0.590473 | 4_1:+3384619 | None:intergenic |
| GCTTGTCAGCCTTCTACCCG+TGG | 0.590728 | 4_1:-3389219 | Msa0529650:CDS |
| ATAGGGATCTTGGTTTAGGG+AGG | 0.592147 | 4_1:+3387810 | None:intergenic |
| TGTGAATGAAATTATCAGGA+AGG | 0.593693 | 4_1:-3384922 | Msa0529650:CDS |
| AAGATTAAGTGGAAAACCAA+AGG | 0.598349 | 4_1:-3384670 | Msa0529650:CDS |
| TTTGGGATGATATTGAGGAA+GGG | 0.600436 | 4_1:-3386288 | Msa0529650:CDS |
| TGGGAGGACAAGCTCTGGAA+GGG | 0.602271 | 4_1:-3388029 | Msa0529650:CDS |
| CCTTGACAAATACCGACCGT+TGG | 0.602728 | 4_1:+3384959 | None:intergenic |
| ACCGTAGAAGAACCACAGAA+AGG | 0.603747 | 4_1:-3387777 | Msa0529650:CDS |
| TGTGCAGAGACAGATGCAGT+AGG | 0.604544 | 4_1:+3384618 | None:intergenic |
| ATCCTGAACAACGGGAATGG+AGG | 0.608982 | 4_1:-3387744 | Msa0529650:CDS |
| TATAAGTATGGAAGGAAATG+CGG | 0.609812 | 4_1:-3387611 | Msa0529650:CDS |
| ATGCACGAAGTTCAGATCCA+CGG | 0.609989 | 4_1:+3389202 | None:intergenic |
| GTCTGCCGATTAGCATTAGG+AGG | 0.611723 | 4_1:+3388670 | None:intergenic |
| GTGATCTGCCTGAAGATGAA+TGG | 0.612166 | 4_1:-3384722 | Msa0529650:CDS |
| AAATCAGGCTCAAAGCATGT+TGG | 0.615504 | 4_1:+3387674 | None:intergenic |
| GGAATGGAGGAGACGACTCG+TGG | 0.616377 | 4_1:-3387731 | Msa0529650:CDS |
| TAGTTCATCAGCCAGTAATG+AGG | 0.617154 | 4_1:+3387858 | None:intergenic |
| GCTTCATCAGCAGCTGCAGG+AGG | 0.617864 | 4_1:-3388889 | Msa0529650:CDS |
| GCAGAGACAGAAGTAAAGAT+GGG | 0.618767 | 4_1:+3389295 | None:intergenic |
| CAGCAGATATGTTTGTAGGG+AGG | 0.620591 | 4_1:-3386384 | Msa0529650:CDS |
| ACTCAACTAACCATTTGTCC+AGG | 0.622338 | 4_1:+3389430 | None:intergenic |
| TGCTCATTATTAGAAGCTCG+TGG | 0.624438 | 4_1:-3388823 | Msa0529650:CDS |
| TGAATCGATGTGAACTCCAT+CGG | 0.624805 | 4_1:+3389524 | None:intergenic |
| CCAACGGTCGGTATTTGTCA+AGG | 0.628869 | 4_1:-3384959 | Msa0529650:CDS |
| ACATAAAGAAATATCAGACC+TGG | 0.635904 | 4_1:-3389448 | Msa0529650:CDS |
| AGTAGCAAGCTGTGAGCATG+CGG | 0.636005 | 4_1:+3389147 | None:intergenic |
| CCGTCAAACACCTCATATGG+AGG | 0.647577 | 4_1:-3389078 | Msa0529650:CDS |
| CCCAACTGCATACTAAGCAG+AGG | 0.650328 | 4_1:+3388048 | None:intergenic |
| AAAATCGTCATCCTGAACAA+CGG | 0.651815 | 4_1:-3387753 | Msa0529650:CDS |
| AGGAGGTTTAAGAGCTGCTG+CGG | 0.658917 | 4_1:-3388872 | Msa0529650:CDS |
| CATACCTGTTGTAGACCAAG+AGG | 0.660216 | 4_1:+3386250 | None:intergenic |
| GAATGGAGGAGACGACTCGT+GGG | 0.664709 | 4_1:-3387730 | Msa0529650:CDS |
| ACGTTCTCCTTCATCAAGAG+CGG | 0.665530 | 4_1:+3389353 | None:intergenic |
| AGCACTACCAGAATCAATGG+AGG | 0.687736 | 4_1:-3387965 | Msa0529650:CDS |
| ACAAGTTCAGAAGAATACGC+TGG | 0.693012 | 4_1:+3388970 | None:intergenic |
| CTGCTTAGTATGCAGTTGGG+AGG | 0.693555 | 4_1:-3388045 | Msa0529650:CDS |
| AAAATGAAAGGGGTGCCAAG+GGG | 0.724461 | 4_1:+3384445 | None:intergenic |
| AAAACCAAAGGAAATAAACG+GGG | 0.769107 | 4_1:-3384658 | Msa0529650:CDS |
| AGAATTCTATTACCGAACGT+AGG | 0.770772 | 4_1:-3389272 | Msa0529650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATATAAATAATTTTAAA+TGG | + | chr4_1:3388347-3388366 | None:intergenic | 0.0% |
| !! | AGGAAAAAAAAAAAAAAAAA+AGG | + | chr4_1:3385605-3385624 | None:intergenic | 10.0% |
| !! | AACGTTAAAAAAAAATTATA+TGG | + | chr4_1:3388890-3388909 | None:intergenic | 10.0% |
| !!! | TGTTGATTTTTAAAAATTAC+AGG | - | chr4_1:3386622-3386641 | Msa0529650:intron | 15.0% |
| !!! | TTTTTAAAAATTACAGGATT+AGG | - | chr4_1:3386628-3386647 | Msa0529650:intron | 15.0% |
| !! | TCTACAATTAGAAATATATA+TGG | + | chr4_1:3386675-3386694 | None:intergenic | 15.0% |
| !! | ATATAATAAACCACAAAAAT+TGG | + | chr4_1:3386787-3386806 | None:intergenic | 15.0% |
| !! | TAAGTTATTAAGATATTCAA+AGG | + | chr4_1:3387328-3387347 | None:intergenic | 15.0% |
| !! | TTGAATATCTTAATAACTTA+TGG | - | chr4_1:3387328-3387347 | Msa0529650:intron | 15.0% |
| !!! | CAAATTGGATAATTTTATTT+GGG | - | chr4_1:3387783-3387802 | Msa0529650:CDS | 15.0% |
| !!! | TTTGTCTTTATTCATTTTAA+TGG | - | chr4_1:3389488-3389507 | Msa0529650:CDS | 15.0% |
| !!! | TTGTCTTTATTCATTTTAAT+GGG | - | chr4_1:3389489-3389508 | Msa0529650:CDS | 15.0% |
| !!! | AGGTAACTGTTTTTTTTTAA+TGG | + | chr4_1:3385463-3385482 | None:intergenic | 20.0% |
| !! | AGACAAAATAAAAGATGAAA+AGG | + | chr4_1:3385625-3385644 | None:intergenic | 20.0% |
| !!! | ATTTTCAATTTACTTTAAGC+TGG | - | chr4_1:3385799-3385818 | Msa0529650:intron | 20.0% |
| !!! | TTTTTGGAAATTTGTGAAAT+TGG | - | chr4_1:3386728-3386747 | Msa0529650:intron | 20.0% |
| !!! | ATTTGTGAAATTGGTAATTA+AGG | - | chr4_1:3386737-3386756 | Msa0529650:intron | 20.0% |
| !! | CAAAAGAAATATTACTCATT+GGG | - | chr4_1:3386944-3386963 | Msa0529650:intron | 20.0% |
| !! | TAAAACATAGTTAGCATTTA+TGG | + | chr4_1:3387271-3387290 | None:intergenic | 20.0% |
| !!! | AAACAATTTTCAGTTAGTTT+TGG | - | chr4_1:3387711-3387730 | Msa0529650:CDS | 20.0% |
| !!! | ATTATCCAATTTGCTTATAA+AGG | + | chr4_1:3387776-3387795 | None:intergenic | 20.0% |
| !!! | GCAAATTGGATAATTTTATT+TGG | - | chr4_1:3387782-3387801 | Msa0529650:CDS | 20.0% |
| !! | AAGAACTCAAGTTTATTATT+GGG | + | chr4_1:3388037-3388056 | None:intergenic | 20.0% |
| !!! | CAATTACATGTTTTAATCAA+AGG | - | chr4_1:3388167-3388186 | Msa0529650:intron | 20.0% |
| !! | AGTATCAATTTAAGAAATCA+AGG | + | chr4_1:3388205-3388224 | None:intergenic | 20.0% |
| !! | TCTTATTACATTAGCTATAA+TGG | - | chr4_1:3388233-3388252 | Msa0529650:intron | 20.0% |
| !! | CTTATTACATTAGCTATAAT+GGG | - | chr4_1:3388234-3388253 | Msa0529650:intron | 20.0% |
| !!! | ACAAATTTTCTTATAAGTTG+TGG | + | chr4_1:3388621-3388640 | None:intergenic | 20.0% |
| !!! | ACAAATTTTCTTATAAGTTG+TGG | + | chr4_1:3388621-3388640 | None:intergenic | 20.0% |
| !! | ATGTTAATTAACGCAATAAT+CGG | + | chr4_1:3389412-3389431 | None:intergenic | 20.0% |
| !! | ATTATTGCGTTAATTAACAT+TGG | - | chr4_1:3389412-3389431 | Msa0529650:CDS | 20.0% |
| !! | AATAAAGACAAAAATGAAAG+GGG | + | chr4_1:3389480-3389499 | None:intergenic | 20.0% |
| !! | GAATAAAGACAAAAATGAAA+GGG | + | chr4_1:3389481-3389500 | None:intergenic | 20.0% |
| !! | TGAATAAAGACAAAAATGAA+AGG | + | chr4_1:3389482-3389501 | None:intergenic | 20.0% |
| !!! | TGTCTTTATTCATTTTAATG+GGG | - | chr4_1:3389490-3389509 | Msa0529650:CDS | 20.0% |
| !! | CTAAAAAGTTTCAAAAGTAC+AGG | + | chr4_1:3385128-3385147 | None:intergenic | 25.0% |
| ! | AAAATTCACATTGCAAATCA+AGG | + | chr4_1:3385483-3385502 | None:intergenic | 25.0% |
| ! | AAGGAAAAATCATAGACTAA+AGG | + | chr4_1:3385586-3385605 | None:intergenic | 25.0% |
| !!! | CAGCTGCATTATTTTAATAT+TGG | - | chr4_1:3385721-3385740 | Msa0529650:intron | 25.0% |
| ! | AAAAACCACAAACTACATAA+GGG | + | chr4_1:3385778-3385797 | None:intergenic | 25.0% |
| ! | AAAAAACCACAAACTACATA+AGG | + | chr4_1:3385779-3385798 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTATGCTTATAC+AGG | - | chr4_1:3385821-3385840 | Msa0529650:intron | 25.0% |
| ! | TATACCTGAAAAATCAAAGA+CGG | + | chr4_1:3386344-3386363 | None:intergenic | 25.0% |
| !!! | CTTTGATTTTTCAGGTATAA+TGG | - | chr4_1:3386345-3386364 | Msa0529650:CDS | 25.0% |
| !! | AAGTGTTAAATTTAAAACCC+AGG | + | chr4_1:3386373-3386392 | None:intergenic | 25.0% |
| !! | AAATCTTCAAAACTGATTCA+TGG | + | chr4_1:3386396-3386415 | None:intergenic | 25.0% |
| !! | TATTTCTTTTGGTAGATGAA+TGG | + | chr4_1:3386935-3386954 | None:intergenic | 25.0% |
| !! | CCAATGAGTAATATTTCTTT+TGG | + | chr4_1:3386946-3386965 | None:intergenic | 25.0% |
| ! | CCAAAAGAAATATTACTCAT+TGG | - | chr4_1:3386943-3386962 | Msa0529650:intron | 25.0% |
| ! | CAATTTATTATTTCCTTCTG+TGG | + | chr4_1:3386989-3387008 | None:intergenic | 25.0% |
| !! | TTAAACTCTGCATTTTATCA+AGG | + | chr4_1:3387139-3387158 | None:intergenic | 25.0% |
| !!! | ACAACTTTTTTACATCTTAG+TGG | - | chr4_1:3387190-3387209 | Msa0529650:intron | 25.0% |
| !!! | CAACTTTTTTACATCTTAGT+GGG | - | chr4_1:3387191-3387210 | Msa0529650:intron | 25.0% |
| ! | TAATAACTTATGGAACATGT+TGG | - | chr4_1:3387338-3387357 | Msa0529650:intron | 25.0% |
| ! | TTTCATAAAACTGAACAGAA+TGG | - | chr4_1:3387496-3387515 | Msa0529650:intron | 25.0% |
| !!! | TTACAGAAACTGTTATTTTG+TGG | - | chr4_1:3387582-3387601 | Msa0529650:CDS | 25.0% |
| ! | ATGCAATTGAAATTTGATCA+TGG | - | chr4_1:3387682-3387701 | Msa0529650:CDS | 25.0% |
| ! | TGATTCCTTTATAAGCAAAT+TGG | - | chr4_1:3387768-3387787 | Msa0529650:CDS | 25.0% |
| ! | TATTATTCTGTTTAAACCAC+TGG | + | chr4_1:3387879-3387898 | None:intergenic | 25.0% |
| ! | TATTTACATGCCTTAAACTT+TGG | + | chr4_1:3387981-3388000 | None:intergenic | 25.0% |
| ! | CAAGAACTCAAGTTTATTAT+TGG | + | chr4_1:3388038-3388057 | None:intergenic | 25.0% |
| ! | ATTAAAACATGTAATTGACG+AGG | + | chr4_1:3388164-3388183 | None:intergenic | 25.0% |
| ! | TCAATTTAAGAAATCAAGGA+TGG | + | chr4_1:3388201-3388220 | None:intergenic | 25.0% |
| !!! | TTCTTTAGAATTTACTGATG+CGG | - | chr4_1:3388805-3388824 | Msa0529650:CDS | 25.0% |
| ! | GAATTGTGAATGAAATTATC+AGG | - | chr4_1:3388986-3389005 | Msa0529650:CDS | 25.0% |
| ! | AATTGCAAAACATACCTATA+CGG | + | chr4_1:3389048-3389067 | None:intergenic | 25.0% |
| !!! | GTCTTTATTCATTTTAATGG+GGG | - | chr4_1:3389491-3389510 | Msa0529650:CDS | 25.0% |
| TACAGAAAAACCATCAGAAT+CGG | + | chr4_1:3384424-3384443 | None:intergenic | 30.0% | |
| ! | TCTGATGGTTTTTCTGTAAA+TGG | - | chr4_1:3384426-3384445 | Msa0529650:three_prime_UTR | 30.0% |
| ! | TTTTTCTGTAAATGGTACAC+TGG | - | chr4_1:3384434-3384453 | Msa0529650:three_prime_UTR | 30.0% |
| ACATAAAGAAATATCAGACC+TGG | - | chr4_1:3384464-3384483 | Msa0529650:three_prime_UTR | 30.0% | |
| TTTCAGCCCTTAAAAAACTT+GGG | - | chr4_1:3384736-3384755 | Msa0529650:intron | 30.0% | |
| TCATGACATAGAATGATGTT+TGG | - | chr4_1:3385363-3385382 | Msa0529650:intron | 30.0% | |
| CATGACATAGAATGATGTTT+GGG | - | chr4_1:3385364-3385383 | Msa0529650:intron | 30.0% | |
| !! | TGAGTAGTTGTTCTAAAACT+AGG | - | chr4_1:3385423-3385442 | Msa0529650:intron | 30.0% |
| ATTGTGTGTGAAAAAACAGA+TGG | - | chr4_1:3385529-3385548 | Msa0529650:intron | 30.0% | |
| GAAAAATCATAGACTAAAGG+TGG | + | chr4_1:3385583-3385602 | None:intergenic | 30.0% | |
| TGGAAACAAAATTGTACGAA+TGG | - | chr4_1:3385992-3386011 | Msa0529650:intron | 30.0% | |
| AGCTGACATGTATATAAGTA+TGG | - | chr4_1:3386289-3386308 | Msa0529650:CDS | 30.0% | |
| GACATGTATATAAGTATGGA+AGG | - | chr4_1:3386293-3386312 | Msa0529650:CDS | 30.0% | |
| TATAAGTATGGAAGGAAATG+CGG | - | chr4_1:3386301-3386320 | Msa0529650:CDS | 30.0% | |
| ! | AATCTGATTCTGTAGTCTTA+TGG | - | chr4_1:3386598-3386617 | Msa0529650:intron | 30.0% |
| !!! | TGGAATGTTGGCTAATTTTT+TGG | - | chr4_1:3386712-3386731 | Msa0529650:intron | 30.0% |
| !! | GGATTCTGAGAATATTTTCT+TGG | - | chr4_1:3386758-3386777 | Msa0529650:intron | 30.0% |
| !! | TTCTTGGTAACCAATTTTTG+TGG | - | chr4_1:3386774-3386793 | Msa0529650:intron | 30.0% |
| GCAGAAAATTGAAACTCTTA+CGG | - | chr4_1:3386813-3386832 | Msa0529650:intron | 30.0% | |
| AAAAAAGTTGACGTGTAACT+AGG | + | chr4_1:3387022-3387041 | None:intergenic | 30.0% | |
| ! | TTTTGTTGAGTTTTACATGC+CGG | - | chr4_1:3387073-3387092 | Msa0529650:intron | 30.0% |
| !! | TATCTATCTCCTGGTTTTTA+TGG | - | chr4_1:3387101-3387120 | Msa0529650:intron | 30.0% |
| GTAAAAAAGTTGTCTACCTA+GGG | + | chr4_1:3387183-3387202 | None:intergenic | 30.0% | |
| TGTAAAAAAGTTGTCTACCT+AGG | + | chr4_1:3387184-3387203 | None:intergenic | 30.0% | |
| AGTTGAAGCATAAACAGAAA+CGG | + | chr4_1:3387431-3387450 | None:intergenic | 30.0% | |
| AGACTGTTATGTTATTATCC+AGG | - | chr4_1:3387469-3387488 | Msa0529650:intron | 30.0% | |
| AAACATATCTGCTGCTATAT+TGG | + | chr4_1:3387522-3387541 | None:intergenic | 30.0% | |
| ! | CCTTAAACTTTGGTTTAGTT+TGG | + | chr4_1:3387971-3387990 | None:intergenic | 30.0% |
| CCAAACTAAACCAAAGTTTA+AGG | - | chr4_1:3387968-3387987 | Msa0529650:CDS | 30.0% | |
| TAAACAAGATGTTTCGAAGT+TGG | + | chr4_1:3388305-3388324 | None:intergenic | 30.0% | |
| GCATTTCACATGTATTTATC+TGG | + | chr4_1:3388393-3388412 | None:intergenic | 30.0% | |
| TAAATACATGTGAAATGCAC+AGG | - | chr4_1:3388395-3388414 | Msa0529650:intron | 30.0% | |
| ! | GTCAATCAATACTAACCTTT+TGG | - | chr4_1:3388506-3388525 | Msa0529650:intron | 30.0% |
| ! | AATACTAACCTTTTGGATTC+TGG | - | chr4_1:3388513-3388532 | Msa0529650:intron | 30.0% |
| !! | CTAAAGTGTTTTTGAAAGGA+CGG | + | chr4_1:3388539-3388558 | None:intergenic | 30.0% |
| GTCCTTTCAAAAACACTTTA+GGG | - | chr4_1:3388538-3388557 | Msa0529650:intron | 30.0% | |
| GGGCACATTTATTTACTTAT+TGG | - | chr4_1:3388558-3388577 | Msa0529650:intron | 30.0% | |
| !!! | TGTGGAGAATTTTCTGAAAT+GGG | + | chr4_1:3388684-3388703 | None:intergenic | 30.0% |
| !! | TTGTGGAGAATTTTCTGAAA+TGG | + | chr4_1:3388685-3388704 | None:intergenic | 30.0% |
| ! | ATTCTAAAGAGCAATACATG+CGG | + | chr4_1:3388772-3388791 | None:intergenic | 30.0% |
| !!! | TAACGTTGTGCAGTTTTATT+TGG | - | chr4_1:3388903-3388922 | Msa0529650:CDS | 30.0% |
| TGTGAATGAAATTATCAGGA+AGG | - | chr4_1:3388990-3389009 | Msa0529650:CDS | 30.0% | |
| AAATGCAGATAGAATGTTGA+TGG | + | chr4_1:3389090-3389109 | None:intergenic | 30.0% | |
| TCATTAAACCATTCATCTTC+AGG | + | chr4_1:3389201-3389220 | None:intergenic | 30.0% | |
| TGAAATATGTCAAGATGCTA+TGG | - | chr4_1:3389218-3389237 | Msa0529650:CDS | 30.0% | |
| AAGATTAAGTGGAAAACCAA+AGG | - | chr4_1:3389242-3389261 | Msa0529650:CDS | 30.0% | |
| GGAAAACCAAAGGAAATAAA+CGG | - | chr4_1:3389252-3389271 | Msa0529650:CDS | 30.0% | |
| GAAAACCAAAGGAAATAAAC+GGG | - | chr4_1:3389253-3389272 | Msa0529650:CDS | 30.0% | |
| AAAACCAAAGGAAATAAACG+GGG | - | chr4_1:3389254-3389273 | Msa0529650:CDS | 30.0% | |
| TTGGACTGTACTAATTTACA+GGG | + | chr4_1:3389370-3389389 | None:intergenic | 30.0% | |
| ATTGGACTGTACTAATTTAC+AGG | + | chr4_1:3389371-3389390 | None:intergenic | 30.0% | |
| CCAGTAATTTCATGATAGAT+TGG | + | chr4_1:3389389-3389408 | None:intergenic | 30.0% | |
| CCAATCTATCATGAAATTAC+TGG | - | chr4_1:3389386-3389405 | Msa0529650:CDS | 30.0% | |
| !!! | ATTTTTTGTCCCGTCAAATT+TGG | - | chr4_1:3389542-3389561 | Msa0529650:CDS | 30.0% |
| TTCTAAATCGGATATCTCCT+TGG | + | chr4_1:3384307-3384326 | None:intergenic | 35.0% | |
| AAGGAGATATCCGATTTAGA+AGG | - | chr4_1:3384306-3384325 | Msa0529650:three_prime_UTR | 35.0% | |
| TGAAAGCTCACCTTCTAAAT+CGG | + | chr4_1:3384319-3384338 | None:intergenic | 35.0% | |
| TTATCGATATCCGATTCTGA+TGG | - | chr4_1:3384411-3384430 | Msa0529650:three_prime_UTR | 35.0% | |
| AAATATCAGACCTGGACAAA+TGG | - | chr4_1:3384472-3384491 | Msa0529650:three_prime_UTR | 35.0% | |
| ! | AGTTGAGTTTCCTGATCTTT+TGG | - | chr4_1:3384497-3384516 | Msa0529650:three_prime_UTR | 35.0% |
| AAGAGAACATCCAAAAGATC+AGG | + | chr4_1:3384510-3384529 | None:intergenic | 35.0% | |
| ! | TGATCTTTTGGATGTTCTCT+TGG | - | chr4_1:3384509-3384528 | Msa0529650:three_prime_UTR | 35.0% |
| AGAATTCTATTACCGAACGT+AGG | - | chr4_1:3384640-3384659 | Msa0529650:CDS | 35.0% | |
| ! | AGCTAATTTTTGCCTACGTT+CGG | + | chr4_1:3384655-3384674 | None:intergenic | 35.0% |
| GTTTCAGCCCTTAAAAAACT+TGG | - | chr4_1:3384735-3384754 | Msa0529650:intron | 35.0% | |
| TTCAGCCCTTAAAAAACTTG+GGG | - | chr4_1:3384737-3384756 | Msa0529650:intron | 35.0% | |
| !!! | ACCATCCCCAAGTTTTTTAA+GGG | + | chr4_1:3384745-3384764 | None:intergenic | 35.0% |
| AGTATAACATGCAAAGTCTC+CGG | - | chr4_1:3384811-3384830 | Msa0529650:intron | 35.0% | |
| !! | AGTGACTCATTGGCTATTTT+TGG | - | chr4_1:3384912-3384931 | Msa0529650:CDS | 35.0% |
| ATTCTTCTGAACTTGTGATG+TGG | - | chr4_1:3384949-3384968 | Msa0529650:CDS | 35.0% | |
| TTCTTCTGAACTTGTGATGT+GGG | - | chr4_1:3384950-3384969 | Msa0529650:CDS | 35.0% | |
| GAGTGTGTTCAAATAGCATT+GGG | - | chr4_1:3385062-3385081 | Msa0529650:intron | 35.0% | |
| TCTAATGCTTGTTCAACACT+AGG | + | chr4_1:3385152-3385171 | None:intergenic | 35.0% | |
| CATATCCTCCTAATGCTAAT+CGG | - | chr4_1:3385237-3385256 | Msa0529650:intron | 35.0% | |
| TTGAAATGCTGTTGTACTAC+CGG | + | chr4_1:3385267-3385286 | None:intergenic | 35.0% | |
| AACCATCAAATTGAAGCGAT+GGG | + | chr4_1:3385309-3385328 | None:intergenic | 35.0% | |
| !!! | TCAGGTGAGACTTTTAGTTT+TGG | - | chr4_1:3385328-3385347 | Msa0529650:intron | 35.0% |
| !! | AAAAGCACTACCAGAATCAA+TGG | - | chr4_1:3385944-3385963 | Msa0529650:intron | 35.0% |
| CTTATAGGGATCTTGGTTTA+GGG | + | chr4_1:3386108-3386127 | None:intergenic | 35.0% | |
| TATCATCCTTATAGGGATCT+TGG | + | chr4_1:3386115-3386134 | None:intergenic | 35.0% | |
| CTACGGTTATCATCCTTATA+GGG | + | chr4_1:3386122-3386141 | None:intergenic | 35.0% | |
| TCTACGGTTATCATCCTTAT+AGG | + | chr4_1:3386123-3386142 | None:intergenic | 35.0% | |
| AAAATCGTCATCCTGAACAA+CGG | - | chr4_1:3386159-3386178 | Msa0529650:intron | 35.0% | |
| ! | TTTGAGCCTGATTTTTACAG+AGG | - | chr4_1:3386247-3386266 | Msa0529650:intron | 35.0% |
| !! | GATTCCGTCTTTGATTTTTC+AGG | - | chr4_1:3386337-3386356 | Msa0529650:CDS | 35.0% |
| !!! | TTTTCAGGTATAATGGAACC+TGG | - | chr4_1:3386352-3386371 | Msa0529650:CDS | 35.0% |
| ! | TTTCAGGTATAATGGAACCT+GGG | - | chr4_1:3386353-3386372 | Msa0529650:CDS | 35.0% |
| CACTTGATGAAGAATGAACA+AGG | + | chr4_1:3386432-3386451 | None:intergenic | 35.0% | |
| GATATGTGTAACGAGGAAAA+AGG | - | chr4_1:3386570-3386589 | Msa0529650:intron | 35.0% | |
| AAGACTACAGAATCAGATTC+TGG | + | chr4_1:3386597-3386616 | None:intergenic | 35.0% | |
| ! | TTTGTTGAGTTTTACATGCC+GGG | - | chr4_1:3387074-3387093 | Msa0529650:intron | 35.0% |
| TATTCCACTCCATAAAAACC+AGG | + | chr4_1:3387113-3387132 | None:intergenic | 35.0% | |
| !!! | TTTTACATCTTAGTGGGTTC+AGG | - | chr4_1:3387197-3387216 | Msa0529650:intron | 35.0% |
| !! | TCAGTTTTATGAAAAGCTCC+TGG | + | chr4_1:3387490-3387509 | None:intergenic | 35.0% |
| ATAGCAGCAGATATGTTTGT+AGG | - | chr4_1:3387524-3387543 | Msa0529650:intron | 35.0% | |
| TAGCAGCAGATATGTTTGTA+GGG | - | chr4_1:3387525-3387544 | Msa0529650:intron | 35.0% | |
| ! | TTTCAGAAGATCAGAGCTTT+TGG | - | chr4_1:3387606-3387625 | Msa0529650:CDS | 35.0% |
| ! | TTCAGAAGATCAGAGCTTTT+GGG | - | chr4_1:3387607-3387626 | Msa0529650:CDS | 35.0% |
| !!! | TTTTGGGATGATATTGAGGA+AGG | - | chr4_1:3387623-3387642 | Msa0529650:CDS | 35.0% |
| ! | TTTGGGATGATATTGAGGAA+GGG | - | chr4_1:3387624-3387643 | Msa0529650:CDS | 35.0% |
| CTGAAACACTGATACCTAAT+AGG | - | chr4_1:3387737-3387756 | Msa0529650:CDS | 35.0% | |
| GAATCAATTCGTGTCCTATT+AGG | + | chr4_1:3387754-3387773 | None:intergenic | 35.0% | |
| ! | TGTTTAAACCACTGGTTGTT+AGG | + | chr4_1:3387871-3387890 | None:intergenic | 35.0% |
| TTTGGATACTCTGCATTCTT+CGG | + | chr4_1:3387953-3387972 | None:intergenic | 35.0% | |
| AAGAAACTTAGCTGTGTATG+TGG | + | chr4_1:3388094-3388113 | None:intergenic | 35.0% | |
| TGTTCATTGTATCAAGCTCA+CGG | - | chr4_1:3388475-3388494 | Msa0529650:intron | 35.0% | |
| CGTCCTTTCAAAAACACTTT+AGG | - | chr4_1:3388537-3388556 | Msa0529650:intron | 35.0% | |
| !! | TGCCCTAAAGTGTTTTTGAA+AGG | + | chr4_1:3388543-3388562 | None:intergenic | 35.0% |
| !! | TGTGGAGAAGTTTCTGAAAT+GGG | + | chr4_1:3388603-3388622 | None:intergenic | 35.0% |
| ! | TTGTGGAGAAGTTTCTGAAA+TGG | + | chr4_1:3388604-3388623 | None:intergenic | 35.0% |
| !!! | GAATTTTCTGAAATGGGTGT+TGG | + | chr4_1:3388678-3388697 | None:intergenic | 35.0% |
| !! | AGAATGTTGATGGTGAAACA+TGG | + | chr4_1:3389080-3389099 | None:intergenic | 35.0% |
| GCATTTGCAATTGTTTCCAT+TGG | - | chr4_1:3389104-3389123 | Msa0529650:CDS | 35.0% | |
| ATTGTTTCCATTGGAAGTTG+TGG | - | chr4_1:3389113-3389132 | Msa0529650:CDS | 35.0% | |
| GATGCTATGGAAAGATTAAG+TGG | - | chr4_1:3389231-3389250 | Msa0529650:CDS | 35.0% | |
| AGTGGATAGTAGGTTTCTGA+TGG | + | chr4_1:3384343-3384362 | None:intergenic | 40.0% | |
| ATGTATCAAGGTTGCTTGAG+TGG | + | chr4_1:3384361-3384380 | None:intergenic | 40.0% | |
| ACTCAAGCAACCTTGATACA+TGG | - | chr4_1:3384360-3384379 | Msa0529650:three_prime_UTR | 40.0% | |
| AGCAACCTTGATACATGGTT+TGG | - | chr4_1:3384365-3384384 | Msa0529650:three_prime_UTR | 40.0% | |
| TGAATCGATGTGAACTCCAT+CGG | + | chr4_1:3384391-3384410 | None:intergenic | 40.0% | |
| ACTCAACTAACCATTTGTCC+AGG | + | chr4_1:3384485-3384504 | None:intergenic | 40.0% | |
| GCAGAGACAGAAGTAAAGAT+GGG | + | chr4_1:3384620-3384639 | None:intergenic | 40.0% | |
| TGCAGAGACAGAAGTAAAGA+TGG | + | chr4_1:3384621-3384640 | None:intergenic | 40.0% | |
| !!! | GACCATCCCCAAGTTTTTTA+AGG | + | chr4_1:3384746-3384765 | None:intergenic | 40.0% |
| AGTATATGCTCCTCCATATG+AGG | + | chr4_1:3384847-3384866 | None:intergenic | 40.0% | |
| !!! | CTCATTGGCTATTTTTGGTG+AGG | - | chr4_1:3384917-3384936 | Msa0529650:CDS | 40.0% |
| ACAAGTTCAGAAGAATACGC+TGG | + | chr4_1:3384945-3384964 | None:intergenic | 40.0% | |
| !! | AACAGAAGCATTTGCTCTTC+TGG | - | chr4_1:3384983-3385002 | Msa0529650:CDS | 40.0% |
| CATTTGCTCTTCTGGTGAAA+AGG | - | chr4_1:3384991-3385010 | Msa0529650:CDS | 40.0% | |
| GGAGTGTGTTCAAATAGCAT+TGG | - | chr4_1:3385061-3385080 | Msa0529650:intron | 40.0% | |
| TGCTCATTATTAGAAGCTCG+TGG | - | chr4_1:3385089-3385108 | Msa0529650:intron | 40.0% | |
| GAACCATCAAATTGAAGCGA+TGG | + | chr4_1:3385310-3385329 | None:intergenic | 40.0% | |
| ! | TCGCTTCAATTTGATGGTTC+AGG | - | chr4_1:3385310-3385329 | Msa0529650:intron | 40.0% |
| AACTACTCACATTGTCCCAA+CGG | + | chr4_1:3385412-3385431 | None:intergenic | 40.0% | |
| CAAACTACATAAGGGAAACG+TGG | + | chr4_1:3385770-3385789 | None:intergenic | 40.0% | |
| CGTTTCCCTTATGTAGTTTG+TGG | - | chr4_1:3385770-3385789 | Msa0529650:intron | 40.0% | |
| GCTTATACAGGACTTCTTTG+AGG | - | chr4_1:3385833-3385852 | Msa0529650:intron | 40.0% | |
| !! | TCTTCTTCCTCCATTGATTC+TGG | + | chr4_1:3385957-3385976 | None:intergenic | 40.0% |
| !! | GAAGAAAGCTTTGAGGATTC+TGG | - | chr4_1:3385972-3385991 | Msa0529650:intron | 40.0% |
| TAGTTCATCAGCCAGTAATG+AGG | + | chr4_1:3386057-3386076 | None:intergenic | 40.0% | |
| CCTTATAGGGATCTTGGTTT+AGG | + | chr4_1:3386109-3386128 | None:intergenic | 40.0% | |
| CCTAAACCAAGATCCCTATA+AGG | - | chr4_1:3386106-3386125 | Msa0529650:intron | 40.0% | |
| ! | ATGACGATTTTGCCTTTCTG+TGG | + | chr4_1:3386150-3386169 | None:intergenic | 40.0% |
| AAATCGTCATCCTGAACAAC+GGG | - | chr4_1:3386160-3386179 | Msa0529650:intron | 40.0% | |
| AAATCAGGCTCAAAGCATGT+TGG | + | chr4_1:3386241-3386260 | None:intergenic | 40.0% | |
| ! | AGCCTGATTTTTACAGAGGA+TGG | - | chr4_1:3386251-3386270 | Msa0529650:intron | 40.0% |
| CACCATCCTCTGTAAAAATC+AGG | + | chr4_1:3386256-3386275 | None:intergenic | 40.0% | |
| GAAATGCGGATGAAGTTGAA+TGG | - | chr4_1:3386315-3386334 | Msa0529650:CDS | 40.0% | |
| ACACTTCTCATGCATAACAC+TGG | + | chr4_1:3386480-3386499 | None:intergenic | 40.0% | |
| ! | CCTGCTCTTTTCTTCTTGTT+GGG | - | chr4_1:3386532-3386551 | Msa0529650:intron | 40.0% |
| TTGTTGGGAACTTCTCTGTT+GGG | - | chr4_1:3386547-3386566 | Msa0529650:intron | 40.0% | |
| AGAATACCTTGTCCACAGTT+TGG | - | chr4_1:3386692-3386711 | Msa0529650:intron | 40.0% | |
| AACATTCCAAACTGTGGACA+AGG | + | chr4_1:3386701-3386720 | None:intergenic | 40.0% | |
| ! | TTGTCCACAGTTTGGAATGT+TGG | - | chr4_1:3386700-3386719 | Msa0529650:intron | 40.0% |
| TTAGCCAACATTCCAAACTG+TGG | + | chr4_1:3386707-3386726 | None:intergenic | 40.0% | |
| ATTTCCTTCTGTGGACAAAG+AGG | + | chr4_1:3386980-3386999 | None:intergenic | 40.0% | |
| !! | ATCTCCTGGTTTTTATGGAG+TGG | - | chr4_1:3387106-3387125 | Msa0529650:intron | 40.0% |
| AGCAGATATGTTTGTAGGGA+GGG | - | chr4_1:3387529-3387548 | Msa0529650:intron | 40.0% | |
| !!! | GAGCTTTTGGGATGATATTG+AGG | - | chr4_1:3387619-3387638 | Msa0529650:CDS | 40.0% |
| ! | ATTTGGGACGCATCTTTGTA+AGG | - | chr4_1:3387799-3387818 | Msa0529650:CDS | 40.0% |
| !! | CATCTTTGTAAGGCTAGTCT+TGG | - | chr4_1:3387809-3387828 | Msa0529650:CDS | 40.0% |
| TGGTTGTTAGGAACTTGGAT+AGG | + | chr4_1:3387859-3387878 | None:intergenic | 40.0% | |
| !! | GAAGTTTCTGAAATGGGTGT+TGG | + | chr4_1:3388597-3388616 | None:intergenic | 40.0% |
| ! | ATGTCAGCATTTTCTGCAAC+AGG | - | chr4_1:3389015-3389034 | Msa0529650:CDS | 40.0% |
| ! | TGTCAGCATTTTCTGCAACA+GGG | - | chr4_1:3389016-3389035 | Msa0529650:CDS | 40.0% |
| ! | ATGATGTTTTTCTCACCCCT+TGG | - | chr4_1:3389452-3389471 | Msa0529650:CDS | 40.0% |
| !! | AAAAATGAAAGGGGTGCCAA+GGG | + | chr4_1:3389471-3389490 | None:intergenic | 40.0% |
| AAACGCAAGCCAAATTTGAC+GGG | + | chr4_1:3389554-3389573 | None:intergenic | 40.0% | |
| CAAACGCAAGCCAAATTTGA+CGG | + | chr4_1:3389555-3389574 | None:intergenic | 40.0% | |
| AGGTTGCTTGAGTGGATAGT+AGG | + | chr4_1:3384353-3384372 | None:intergenic | 45.0% | |
| ATCGGCCAAACCATGTATCA+AGG | + | chr4_1:3384373-3384392 | None:intergenic | 45.0% | |
| ! | TTGATACATGGTTTGGCCGA+TGG | - | chr4_1:3384372-3384391 | Msa0529650:three_prime_UTR | 45.0% |
| TGGATGTTCTCTTGGCTGAA+AGG | - | chr4_1:3384517-3384536 | Msa0529650:three_prime_UTR | 45.0% | |
| AAGGCGAGTAGAAGAAGCTT+TGG | - | chr4_1:3384536-3384555 | Msa0529650:three_prime_UTR | 45.0% | |
| ACGTTCTCCTTCATCAAGAG+CGG | + | chr4_1:3384562-3384581 | None:intergenic | 45.0% | |
| ATGCACGAAGTTCAGATCCA+CGG | + | chr4_1:3384713-3384732 | None:intergenic | 45.0% | |
| GCCCTTAAAAAACTTGGGGA+TGG | - | chr4_1:3384741-3384760 | Msa0529650:intron | 45.0% | |
| ! | CCTCCATATGAGGTGTTTGA+CGG | + | chr4_1:3384837-3384856 | None:intergenic | 45.0% |
| ACAAGCTGCAAGTGACTCAT+TGG | - | chr4_1:3384902-3384921 | Msa0529650:CDS | 45.0% | |
| ! | TCTGGTGAAAAGGCATGCAT+TGG | - | chr4_1:3385001-3385020 | Msa0529650:intron | 45.0% |
| !! | ACAAGAGAGTACTGCTGCTA+TGG | - | chr4_1:3385190-3385209 | Msa0529650:intron | 45.0% |
| TATGGCTGCTGCTGATGATT+GGG | - | chr4_1:3385208-3385227 | Msa0529650:intron | 45.0% | |
| TGCCCATCGCTTCAATTTGA+TGG | - | chr4_1:3385304-3385323 | Msa0529650:intron | 45.0% | |
| AACAGTGATATAGCAGCCGT+TGG | - | chr4_1:3385393-3385412 | Msa0529650:intron | 45.0% | |
| ACAGTGATATAGCAGCCGTT+GGG | - | chr4_1:3385394-3385413 | Msa0529650:intron | 45.0% | |
| ! | CAGGACTTCTTTGAGGATGT+AGG | - | chr4_1:3385840-3385859 | Msa0529650:intron | 45.0% |
| ACCTCTGCTTAGTATGCAGT+TGG | - | chr4_1:3385863-3385882 | Msa0529650:intron | 45.0% | |
| CCTCTGCTTAGTATGCAGTT+GGG | - | chr4_1:3385864-3385883 | Msa0529650:intron | 45.0% | |
| AGCACTACCAGAATCAATGG+AGG | - | chr4_1:3385947-3385966 | Msa0529650:intron | 45.0% | |
| GGAGGAAGAAGAAAGCTTTG+AGG | - | chr4_1:3385965-3385984 | Msa0529650:intron | 45.0% | |
| AATCTGCTGGGCTTCAGTTT+CGG | + | chr4_1:3386018-3386037 | None:intergenic | 45.0% | |
| GCTAGCTAATGCCTCATTAC+TGG | - | chr4_1:3386043-3386062 | Msa0529650:intron | 45.0% | |
| ATAGGGATCTTGGTTTAGGG+AGG | + | chr4_1:3386105-3386124 | None:intergenic | 45.0% | |
| ACCGTAGAAGAACCACAGAA+AGG | - | chr4_1:3386135-3386154 | Msa0529650:intron | 45.0% | |
| GCCTTTCTGTGGTTCTTCTA+CGG | + | chr4_1:3386139-3386158 | None:intergenic | 45.0% | |
| GGCAGAAAGGAAAAGTAGAG+AGG | + | chr4_1:3386514-3386533 | None:intergenic | 45.0% | |
| GAAGAAAAGAGCAGGCAGAA+AGG | + | chr4_1:3386527-3386546 | None:intergenic | 45.0% | |
| ! | GCCTGCTCTTTTCTTCTTGT+TGG | - | chr4_1:3386531-3386550 | Msa0529650:intron | 45.0% |
| CCCAACAAGAAGAAAAGAGC+AGG | + | chr4_1:3386535-3386554 | None:intergenic | 45.0% | |
| CTTGTTGGGAACTTCTCTGT+TGG | - | chr4_1:3386546-3386565 | Msa0529650:intron | 45.0% | |
| TGTTGGGAACTTCTCTGTTG+GGG | - | chr4_1:3386548-3386567 | Msa0529650:intron | 45.0% | |
| TGTTGGGGATATGTGTAACG+AGG | - | chr4_1:3386563-3386582 | Msa0529650:intron | 45.0% | |
| !! | GAAACTCTTACGGCATTGAC+TGG | - | chr4_1:3386823-3386842 | Msa0529650:intron | 45.0% |
| TGTTCCTCTTTGTCCACAGA+AGG | - | chr4_1:3386973-3386992 | Msa0529650:intron | 45.0% | |
| AGTTGTCTACCTAGGGACAT+GGG | + | chr4_1:3387176-3387195 | None:intergenic | 45.0% | |
| AAGTTGTCTACCTAGGGACA+TGG | + | chr4_1:3387177-3387196 | None:intergenic | 45.0% | |
| CAGCAGATATGTTTGTAGGG+AGG | - | chr4_1:3387528-3387547 | Msa0529650:intron | 45.0% | |
| ATGATATTGAGGAAGGGCCA+AGG | - | chr4_1:3387630-3387649 | Msa0529650:CDS | 45.0% | |
| TGTAGACCAAGAGGACCTAA+AGG | + | chr4_1:3387656-3387675 | None:intergenic | 45.0% | |
| CATACCTGTTGTAGACCAAG+AGG | + | chr4_1:3387665-3387684 | None:intergenic | 45.0% | |
| AACTTGGATAGGTCAGTGCT+TGG | + | chr4_1:3387848-3387867 | None:intergenic | 45.0% | |
| TCCAAGTTCCTAACAACCAG+TGG | - | chr4_1:3387860-3387879 | Msa0529650:CDS | 45.0% | |
| ! | ACCACTGGTTGTTAGGAACT+TGG | + | chr4_1:3387864-3387883 | None:intergenic | 45.0% |
| AGCAATACATGCGGCTATGT+TGG | + | chr4_1:3388763-3388782 | None:intergenic | 45.0% | |
| ! | GTTGTGTGTTTTGCCTCCAA+CGG | - | chr4_1:3388937-3388956 | Msa0529650:CDS | 45.0% |
| ! | AGCATTTTCTGCAACAGGGA+TGG | - | chr4_1:3389020-3389039 | Msa0529650:CDS | 45.0% |
| TTCAGAGCCACAACTTCCAA+TGG | + | chr4_1:3389123-3389142 | None:intergenic | 45.0% | |
| GTGATCTGCCTGAAGATGAA+TGG | - | chr4_1:3389190-3389209 | Msa0529650:CDS | 45.0% | |
| CTCTCCCCGTTTATTTCCTT+TGG | + | chr4_1:3389261-3389280 | None:intergenic | 45.0% | |
| !! | AAAATGAAAGGGGTGCCAAG+GGG | + | chr4_1:3389470-3389489 | None:intergenic | 45.0% |
| !! | CAAAAATGAAAGGGGTGCCA+AGG | + | chr4_1:3389472-3389491 | None:intergenic | 45.0% |
| !! | CTAATATATATATATATATT+AGG | + | chr4_1:3386874-3386893 | None:intergenic | 5.0% |
| !! | TAAATATTATAACAAATATA+AGG | + | chr4_1:3388644-3388663 | None:intergenic | 5.0% |
| !! | TAAATATTATAACAAATATA+AGG | + | chr4_1:3388644-3388663 | None:intergenic | 5.0% |
| AGTTCAGATCCACGGGTAGA+AGG | + | chr4_1:3384705-3384724 | None:intergenic | 50.0% | |
| TGCACGAAGTTCAGATCCAC+GGG | + | chr4_1:3384712-3384731 | None:intergenic | 50.0% | |
| AGTAGCAAGCTGTGAGCATG+CGG | + | chr4_1:3384768-3384787 | None:intergenic | 50.0% | |
| ! | CATATGAGGTGTTTGACGGC+CGG | + | chr4_1:3384833-3384852 | None:intergenic | 50.0% |
| CCGTCAAACACCTCATATGG+AGG | - | chr4_1:3384834-3384853 | Msa0529650:intron | 50.0% | |
| ! | TACTGCAGCTCTAGCACAAC+TGG | - | chr4_1:3384863-3384882 | Msa0529650:intron | 50.0% |
| AGGAGGTTTAAGAGCTGCTG+CGG | - | chr4_1:3385040-3385059 | Msa0529650:intron | 50.0% | |
| CTATGGCTGCTGCTGATGAT+TGG | - | chr4_1:3385207-3385226 | Msa0529650:intron | 50.0% | |
| ! | GTCTGCCGATTAGCATTAGG+AGG | + | chr4_1:3385245-3385264 | None:intergenic | 50.0% |
| CCTAATGCTAATCGGCAGAC+CGG | - | chr4_1:3385245-3385264 | Msa0529650:intron | 50.0% | |
| CCCAACTGCATACTAAGCAG+AGG | + | chr4_1:3385867-3385886 | None:intergenic | 50.0% | |
| CTGCTTAGTATGCAGTTGGG+AGG | - | chr4_1:3385867-3385886 | Msa0529650:intron | 50.0% | |
| AGCTAGCAGTGCAATCTGCT+GGG | + | chr4_1:3386030-3386049 | None:intergenic | 50.0% | |
| TAGCTAGCAGTGCAATCTGC+TGG | + | chr4_1:3386031-3386050 | None:intergenic | 50.0% | |
| GTTTAGGGAGGAGAGCTTCA+TGG | + | chr4_1:3386093-3386112 | None:intergenic | 50.0% | |
| GTCATCCTGAACAACGGGAA+TGG | - | chr4_1:3386165-3386184 | Msa0529650:intron | 50.0% | |
| ATCCTGAACAACGGGAATGG+AGG | - | chr4_1:3386168-3386187 | Msa0529650:intron | 50.0% | |
| CCAGGAGATAGATATGCACC+CGG | + | chr4_1:3387095-3387114 | None:intergenic | 50.0% | |
| !! | CATCTTAGTGGGTTCAGGCT+TGG | - | chr4_1:3387202-3387221 | Msa0529650:intron | 50.0% |
| AGGTCCTCTTGGTCTACAAC+AGG | - | chr4_1:3387658-3387677 | Msa0529650:CDS | 50.0% | |
| AAGGACGGCCAGAATCCAAA+AGG | + | chr4_1:3388524-3388543 | None:intergenic | 50.0% | |
| ! | TGTGTTTTGCCTCCAACGGT+CGG | - | chr4_1:3388941-3388960 | Msa0529650:CDS | 50.0% |
| TGACAAATACCGACCGTTGG+AGG | + | chr4_1:3388953-3388972 | None:intergenic | 50.0% | |
| CCTTGACAAATACCGACCGT+TGG | + | chr4_1:3388956-3388975 | None:intergenic | 50.0% | |
| CCAACGGTCGGTATTTGTCA+AGG | - | chr4_1:3388953-3388972 | Msa0529650:CDS | 50.0% | |
| CAACAGGGATGGATCCGTAT+AGG | - | chr4_1:3389031-3389050 | Msa0529650:CDS | 50.0% | |
| GTGCAGAGACAGATGCAGTA+GGG | + | chr4_1:3389296-3389315 | None:intergenic | 50.0% | |
| TGTGCAGAGACAGATGCAGT+AGG | + | chr4_1:3389297-3389316 | None:intergenic | 50.0% | |
| GCTTTGGCCGCTCTTGATGA+AGG | - | chr4_1:3384552-3384571 | Msa0529650:three_prime_UTR | 55.0% | |
| CGGCCGTCAAACACCTCATA+TGG | - | chr4_1:3384831-3384850 | Msa0529650:intron | 55.0% | |
| TTGGCTTCATCAGCAGCTGC+AGG | - | chr4_1:3385020-3385039 | Msa0529650:intron | 55.0% | |
| ! | CCGGTCTGCCGATTAGCATT+AGG | + | chr4_1:3385248-3385267 | None:intergenic | 55.0% |
| !! | TTGGGAGGACAAGCTCTGGA+AGG | - | chr4_1:3385882-3385901 | Msa0529650:intron | 55.0% |
| !! | TGGGAGGACAAGCTCTGGAA+GGG | - | chr4_1:3385883-3385902 | Msa0529650:intron | 55.0% |
| CTCCTCCATTCCCGTTGTTC+AGG | + | chr4_1:3386173-3386192 | None:intergenic | 55.0% | |
| GAATGGAGGAGACGACTCGT+GGG | - | chr4_1:3386182-3386201 | Msa0529650:intron | 55.0% | |
| GACTCGTGGGTTCAGTTGAC+AGG | - | chr4_1:3386195-3386214 | Msa0529650:intron | 55.0% | |
| CCGGGTGCATATCTATCTCC+TGG | - | chr4_1:3387092-3387111 | Msa0529650:intron | 55.0% | |
| TGTCTACCTAGGGACATGGG+AGG | + | chr4_1:3387173-3387192 | None:intergenic | 55.0% | |
| CCAAGAGGACCTAAAGGCCT+TGG | + | chr4_1:3387650-3387669 | None:intergenic | 55.0% | |
| CCAAGGCCTTTAGGTCCTCT+TGG | - | chr4_1:3387647-3387666 | Msa0529650:CDS | 55.0% | |
| GCTTGTCAGCCTTCTACCCG+TGG | - | chr4_1:3384693-3384712 | Msa0529650:CDS | 60.0% | |
| GCTTCATCAGCAGCTGCAGG+AGG | - | chr4_1:3385023-3385042 | Msa0529650:intron | 60.0% | |
| GCAGTTGGGAGGACAAGCTC+TGG | - | chr4_1:3385878-3385897 | Msa0529650:intron | 60.0% | |
| GGAATGGAGGAGACGACTCG+TGG | - | chr4_1:3386181-3386200 | Msa0529650:intron | 60.0% | |
| GAAGCTCCTCCCATGTCCCT+AGG | - | chr4_1:3387164-3387183 | Msa0529650:intron | 60.0% | |
| GAGGAAGGGCCAAGGCCTTT+AGG | - | chr4_1:3387638-3387657 | Msa0529650:CDS | 60.0% | |
| GAGAGCTTCATGGCTGCGCG+TGG | + | chr4_1:3386083-3386102 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 3384294 | 3389640 | 3384294 | ID=Msa0529650;Name=Msa0529650 |
| chr4_1 | mRNA | 3384294 | 3389640 | 3384294 | ID=Msa0529650-mRNA-1;Parent=Msa0529650;Name=Msa0529650-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|1|0.8|1|1|1|5|287|680 |
| chr4_1 | exon | 3384294 | 3384743 | 3384294 | ID=Msa0529650-mRNA-1:exon:1006;Parent=Msa0529650-mRNA-1 |
| chr4_1 | exon | 3384882 | 3385018 | 3384882 | ID=Msa0529650-mRNA-1:exon:1005;Parent=Msa0529650-mRNA-1 |
| chr4_1 | exon | 3386255 | 3386443 | 3386255 | ID=Msa0529650-mRNA-1:exon:1004;Parent=Msa0529650-mRNA-1 |
| chr4_1 | exon | 3387576 | 3388091 | 3387576 | ID=Msa0529650-mRNA-1:exon:1003;Parent=Msa0529650-mRNA-1 |
| chr4_1 | exon | 3388603 | 3389640 | 3388603 | ID=Msa0529650-mRNA-1:exon:1002;Parent=Msa0529650-mRNA-1 |
| chr4_1 | CDS | 3388603 | 3389640 | 3388603 | ID=Msa0529650-mRNA-1:cds;Parent=Msa0529650-mRNA-1 |
| chr4_1 | CDS | 3387576 | 3388091 | 3387576 | ID=Msa0529650-mRNA-1:cds;Parent=Msa0529650-mRNA-1 |
| chr4_1 | CDS | 3386255 | 3386443 | 3386255 | ID=Msa0529650-mRNA-1:cds;Parent=Msa0529650-mRNA-1 |
| chr4_1 | CDS | 3384882 | 3385018 | 3384882 | ID=Msa0529650-mRNA-1:cds;Parent=Msa0529650-mRNA-1 |
| chr4_1 | CDS | 3384581 | 3384743 | 3384581 | ID=Msa0529650-mRNA-1:cds;Parent=Msa0529650-mRNA-1 |
| chr4_1 | three_prime_UTR | 3384294 | 3384580 | 3384294 | ID=Msa0529650-mRNA-1:three_prime_utr;Parent=Msa0529650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
