AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0188700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188700 MtrunA17_Chr2g0277001 95.016 943 35 4 1 939 1 935 0.0 1673
Msa0188700 MtrunA17_Chr7g0275381 93.305 941 56 6 1 939 1 936 0.0 1669
Msa0188700 MtrunA17_Chr1g0155771 94.468 940 46 4 1 939 1 935 0.0 1639
Msa0188700 MtrunA17_Chr6g0468211 57.241 580 135 10 262 837 62 532 0.0 566
Msa0188700 MtrunA17_Chr2g0316781 51.852 405 49 7 167 570 12 271 1.97e-113 349
Msa0188700 MtrunA17_Chr2g0303811 81.935 155 28 0 568 722 1 155 9.93e-86 271
Msa0188700 MtrunA17_Chr6g0468421 57.752 258 41 3 325 582 1 190 1.24e-83 267
Msa0188700 MtrunA17_Chr6g0468011 60.606 198 47 4 262 457 12 180 7.65e-65 216
Msa0188700 MtrunA17_Chr6g0468411 75.556 135 29 1 559 689 5 139 3.79e-63 211
Msa0188700 MtrunA17_Chr2g0303821 61.468 109 41 1 730 837 1 109 2.20e-37 137
Msa0188700 MtrunA17_Chr6g0467941 47.917 144 23 2 546 689 1 92 3.57e-31 118
Msa0188700 MtrunA17_Chr6g0467931 65.347 101 33 2 729 827 1 101 4.54e-31 117
Msa0188700 MtrunA17_Chr6g0468001 57.658 111 25 3 729 837 1 91 2.07e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188700 AT3G56150.2 66.526 947 262 14 1 939 1 900 0.0 1154
Msa0188700 AT3G56150.1 66.526 947 262 14 1 939 1 900 0.0 1154
Msa0188700 AT3G22860.1 63.799 616 204 6 246 851 181 787 0.0 788

Find 270 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATGTTTGTTCTGATTTA+TGG 0.039660 2_1:+3912244 Msa0188700:three_prime_UTR
TCTGGTTGTTATGAGAATTT+AGG 0.156316 2_1:-3908197 None:intergenic
CAAGAAGTTCAAAGAGATTC+TGG 0.204715 2_1:+3909119 Msa0188700:CDS
GATTTCAGATGAAATTTCTT+TGG 0.216565 2_1:+3912184 Msa0188700:three_prime_UTR
GCACTGTAAGCCAGAGATTT+TGG 0.217294 2_1:+3912376 Msa0188700:three_prime_UTR
GCTGGGACTCATCTTCTTCT+TGG 0.219134 2_1:-3908755 None:intergenic
TGTAAAGATTAGGGATCTTT+TGG 0.232109 2_1:-3908675 None:intergenic
ACATGATCCCTGACAGTTTC+AGG 0.235192 2_1:-3911334 None:intergenic
TGTTTGTCTGAACTTTATTC+TGG 0.235265 2_1:+3910092 Msa0188700:CDS
CAATAATGTCAAAGGCCTTC+TGG 0.238181 2_1:-3911393 None:intergenic
GGTTTCCGCGCCACAAGTTC+CGG 0.248793 2_1:-3909792 None:intergenic
GCCACAAGGGTTCTTATTAA+TGG 0.250263 2_1:+3911364 Msa0188700:CDS
AACCAATGGCTTCGAGATTC+TGG 0.262577 2_1:+3908223 Msa0188700:exon
TGCTCAGGCTTCTGCTAATA+AGG 0.263529 2_1:+3908729 Msa0188700:CDS
CTGGTTGTTATGAGAATTTA+GGG 0.266616 2_1:-3908196 None:intergenic
GGAAAATAGCAGGACCTTAA+TGG 0.268698 2_1:+3909824 Msa0188700:CDS
GTTGAAGGCTTTGGCATTGC+TGG 0.280294 2_1:-3908773 None:intergenic
GAATCATCAACCTTTATGTT+TGG 0.286060 2_1:-3909363 None:intergenic
CAACAACGGGTTTGGTTTGT+AGG 0.300152 2_1:-3908462 None:intergenic
TATGCACTTAATCTAGATTC+TGG 0.301092 2_1:+3912162 Msa0188700:three_prime_UTR
TCCAGTTCCCTTCCTGCCCC+TGG 0.302069 2_1:-3909145 None:intergenic
ATCATATGATTCTTTCAGTT+TGG 0.303868 2_1:+3911525 Msa0188700:CDS
CTTCATTGAGTTGAAGGCTT+TGG 0.318286 2_1:-3908782 None:intergenic
CAGATTTAACAACACGCTTT+TGG 0.326666 2_1:-3908510 None:intergenic
TTATGAAGCAACGAGAAAAT+TGG 0.328433 2_1:+3909677 Msa0188700:CDS
GAGATGAGTGAGGAGTTAAA+AGG 0.329554 2_1:+3909729 Msa0188700:CDS
TCTATTAGCTGTATTGTTGT+TGG 0.331234 2_1:-3908437 None:intergenic
GGAGGCGGCTATCAGAATTC+AGG 0.346447 2_1:+3911994 Msa0188700:CDS
AATCATCAACCTTTATGTTT+GGG 0.349179 2_1:-3909362 None:intergenic
GATTATGCCGCTGCAGCTGC+TGG 0.352272 2_1:+3911814 Msa0188700:CDS
CCGGGATTTAGTACCTGTTC+TGG 0.353112 2_1:-3910176 None:intergenic
CTATTAGCTGTATTGTTGTT+GGG 0.353968 2_1:-3908436 None:intergenic
GGTGGTAGTGGAACGTCTTC+AGG 0.355830 2_1:+3911838 Msa0188700:CDS
TAGCAAGAAAGACAGGCTTT+TGG 0.359604 2_1:+3909047 Msa0188700:CDS
TACCCGCATGGTTAGCCTTA+GGG 0.360330 2_1:+3912065 Msa0188700:CDS
ACTCTCAAGGGTGCAGGCTT+TGG 0.361470 2_1:+3911678 Msa0188700:CDS
ATTTCAGATGAAATTTCTTT+GGG 0.372007 2_1:+3912185 Msa0188700:three_prime_UTR
ATGATGAAGAGAAGGTAAAT+AGG 0.373547 2_1:-3911507 None:intergenic
CAATGCTTTCAAGATATTCC+TGG 0.380146 2_1:-3909584 None:intergenic
AGATTTATATGCATATGATA+TGG 0.383704 2_1:-3911160 None:intergenic
ATGACCGTAGAGGGAGATAA+TGG 0.387791 2_1:+3909705 Msa0188700:CDS
GGCGCGGAAACCCACCTTCC+CGG 0.387923 2_1:+3909803 Msa0188700:CDS
GCAAGCTGGGATCAGCCAAC+TGG 0.390557 2_1:+3911631 Msa0188700:CDS
TCCGGCTTCCTGAGCTGATC+AGG 0.393176 2_1:-3908940 None:intergenic
AGATTTCAAAGCTTCTTCTA+AGG 0.393340 2_1:+3909608 Msa0188700:CDS
GCCTTGCCTTGTTTGAGAAT+AGG 0.394600 2_1:-3911881 None:intergenic
CTACCCGCATGGTTAGCCTT+AGG 0.397357 2_1:+3912064 Msa0188700:CDS
GCCAGGGGCAGGAAGGGAAC+TGG 0.399839 2_1:+3909144 Msa0188700:CDS
TGATGATGGCGATGCTCCTT+GGG 0.400541 2_1:+3909014 Msa0188700:CDS
GCTCAGTTTGATGTTAATCC+AGG 0.401276 2_1:+3909258 Msa0188700:CDS
TCGAAGCCATTGGTTTAGTC+TGG 0.401988 2_1:-3908215 None:intergenic
AGAGCCTTGATGTAAAGATT+AGG 0.402756 2_1:-3908685 None:intergenic
GTGATGATGGCGATGCTCCT+TGG 0.404468 2_1:+3909013 Msa0188700:CDS
GCTTGAAGATTTCCTTGCTC+AGG 0.408980 2_1:+3908714 Msa0188700:CDS
CCGGTCCTCCTGAAACTGTC+AGG 0.411793 2_1:+3911326 Msa0188700:CDS
ATGTAAGATGCACTGATTCC+AGG 0.412950 2_1:-3911189 None:intergenic
GAGCCTTGATGTAAAGATTA+GGG 0.415850 2_1:-3908684 None:intergenic
ATGACGGACCCATTCATGTC+TGG 0.416244 2_1:+3909427 Msa0188700:CDS
GCCGCTGCAGCTGCTGGTGG+TGG 0.418701 2_1:+3911820 Msa0188700:CDS
GTTTCCGCGCCACAAGTTCC+GGG 0.419096 2_1:-3909791 None:intergenic
TTAAGTGCATAATAATAAAC+TGG 0.419627 2_1:-3912150 None:intergenic
TAGATAATTTCTCAGTCAAC+TGG 0.421894 2_1:-3911705 None:intergenic
TGATACTAACACATCCATTA+AGG 0.425287 2_1:-3909838 None:intergenic
GCAGCTGCTGGTGGTGGTAG+TGG 0.425549 2_1:+3911826 Msa0188700:CDS
AATGAGTTCAACCCTCTTCA+AGG 0.428889 2_1:-3909634 None:intergenic
ACTGTCATCAACAACGGGTT+TGG 0.429963 2_1:-3908470 None:intergenic
AACAGGGCTATGTCACAGTT+AGG 0.435704 2_1:+3910026 Msa0188700:CDS
TTGAAGGCTTTGGCATTGCT+GGG 0.436119 2_1:-3908772 None:intergenic
GAAACTTGTGCCAAAATCTC+TGG 0.436609 2_1:-3912386 None:intergenic
CGTGCAGCACCCAAACATAA+AGG 0.438376 2_1:+3909353 Msa0188700:CDS
TGCCCATCTCTTCGCCTTGG+AGG 0.438441 2_1:-3911790 None:intergenic
TCAAAGAGATTCTGGAAGCC+AGG 0.439840 2_1:+3909127 Msa0188700:CDS
GCATATAAATCTTGAGCTCC+TGG 0.445116 2_1:+3911171 Msa0188700:CDS
GGCATATGCCCACTGAGGCC+TGG 0.449256 2_1:-3909276 None:intergenic
ATGAGGAGCTTCATGCAAGC+TGG 0.457408 2_1:+3911617 Msa0188700:CDS
TTCAGTCAAGCTGGTGGGAG+TGG 0.458684 2_1:+3911943 Msa0188700:CDS
CAGAACAAACATTGGGAGCT+GGG 0.459982 2_1:-3912236 None:intergenic
ATGAGAATGAAACTAAGAAA+GGG 0.464510 2_1:+3909397 Msa0188700:CDS
TCAGAATCCGACACGGGCTC+CGG 0.466090 2_1:-3908958 None:intergenic
AATTATCTTTCAGGAAAGGT+TGG 0.471050 2_1:+3911120 Msa0188700:intron
TCAGAAATGTTGAACTCTCA+AGG 0.471342 2_1:+3911665 Msa0188700:CDS
TCCTGCCCATCTCTTCGCCT+TGG 0.472750 2_1:-3911793 None:intergenic
TCTAGAGGACGGGGAACGAT+TGG 0.474394 2_1:+3911973 Msa0188700:CDS
AACTGTCAGGGATCATGTTA+TGG 0.475362 2_1:+3911339 Msa0188700:CDS
TCTTACATCTGCTATGCTGC+TGG 0.477105 2_1:+3911204 Msa0188700:CDS
TGAACATTGGCTGCCATGTT+GGG 0.479489 2_1:-3911232 None:intergenic
TAATAAACTGGTAAAAGAAA+AGG 0.479905 2_1:-3912138 None:intergenic
AGCTGCAGTTTCTTCTTCAT+CGG 0.482972 2_1:+3908140 None:intergenic
GGGAACTGGAAGGTTTGAAC+AGG 0.485450 2_1:+3909158 Msa0188700:CDS
GATTCTGAAACTTCTGAGCT+TGG 0.486351 2_1:+3908973 Msa0188700:CDS
TTGTTGGGTTCATCATCAAC+GGG 0.486651 2_1:-3908421 None:intergenic
TAAGTTGCCCCAGACATGAA+TGG 0.490965 2_1:-3909436 None:intergenic
TCATGAAAAGACTCCAGAAC+AGG 0.493182 2_1:+3910163 Msa0188700:CDS
GTGAATATGTTGAGAGACTC+AGG 0.493281 2_1:+3909526 Msa0188700:CDS
CAGAATTCAGGGAGGACTCA+AGG 0.493339 2_1:+3912006 Msa0188700:CDS
GAAGCAAGGTTAGGCGGCGG+TGG 0.493372 2_1:+3911757 Msa0188700:CDS
GTTGTTGGGTTCATCATCAA+CGG 0.494263 2_1:-3908422 None:intergenic
TCGTCACTGTCATCAACAAC+GGG 0.495380 2_1:-3908475 None:intergenic
TGACATTATTGCATCTCTTG+AGG 0.496021 2_1:+3911405 Msa0188700:CDS
TCAGAACAAACATTGGGAGC+TGG 0.496440 2_1:-3912237 None:intergenic
CATTGGGAGCTGGGAGAGGA+GGG 0.496780 2_1:-3912227 None:intergenic
TGACGGACCCATTCATGTCT+GGG 0.497542 2_1:+3909428 Msa0188700:CDS
GGAAAAGGATGACGAGGATG+AGG 0.497694 2_1:+3908879 Msa0188700:CDS
CTTGGTAATGACAGGCCTCC+TGG 0.498069 2_1:+3908991 Msa0188700:CDS
CAGGAATATCTTGAAAGCAT+TGG 0.498525 2_1:+3909585 Msa0188700:CDS
TTATTCTGGTGGACGGGTGA+AGG 0.499453 2_1:+3910106 Msa0188700:CDS
AAATCAAGGAGGAGGCGCTT+AGG 0.499787 2_1:+3911479 Msa0188700:CDS
CATAAATCAGAACAAACATT+GGG 0.500452 2_1:-3912243 None:intergenic
ATGAACATTGGCTGCCATGT+TGG 0.505127 2_1:-3911233 None:intergenic
CTGGAAGCCAGGGGCAGGAA+GGG 0.505830 2_1:+3909138 Msa0188700:CDS
TCAACGGGTTCAGTATCGTT+AGG 0.505992 2_1:-3908406 None:intergenic
ACATTGGGAGCTGGGAGAGG+AGG 0.506596 2_1:-3912228 None:intergenic
ATGTTAATCCAGGCCTCAGT+GGG 0.508312 2_1:+3909268 Msa0188700:CDS
ACCCGCATGGTTAGCCTTAG+GGG 0.508509 2_1:+3912066 Msa0188700:CDS
CAGAAATGTTGAACTCTCAA+GGG 0.508616 2_1:+3911666 Msa0188700:CDS
AGATTCTGGAAGCCAGGGGC+AGG 0.509743 2_1:+3909133 Msa0188700:CDS
AGAATTCAGGGAGGACTCAA+GGG 0.510031 2_1:+3912007 Msa0188700:CDS
AGAATCTGCAGCTTCTGAGC+AGG 0.511073 2_1:-3909219 None:intergenic
ATCCTTCAGCATTTCTAGCA+CGG 0.511752 2_1:-3911455 None:intergenic
AAGTTGCCCCAGACATGAAT+GGG 0.512091 2_1:-3909435 None:intergenic
GGCAGTGGACGTACAGGATA+CGG 0.514533 2_1:+3911901 Msa0188700:CDS
GATGAGAATGAAACTAAGAA+AGG 0.515170 2_1:+3909396 Msa0188700:CDS
TCCAAGGCGAAGAGATGGGC+AGG 0.515359 2_1:+3911792 Msa0188700:CDS
AAGGTTAGGCGGCGGTGGGT+TGG 0.516660 2_1:+3911762 Msa0188700:CDS
ACCTGATCAGCTCAGGAAGC+CGG 0.516893 2_1:+3908939 Msa0188700:CDS
TCATTGAACCTGATCAGCTC+AGG 0.519230 2_1:+3908932 Msa0188700:CDS
TGCTCCGTTTGTTGTTACCC+CGG 0.519622 2_1:+3909773 Msa0188700:CDS
GATCCCTAATCTTTACATCA+AGG 0.521376 2_1:+3908681 Msa0188700:CDS
TGGCGGCTATTCTAGAGGAC+GGG 0.522471 2_1:+3911963 Msa0188700:CDS
AGGACTTGATTATCAAATGT+AGG 0.523141 2_1:+3908836 Msa0188700:CDS
TGTTGAACTCTCAAGGGTGC+AGG 0.524552 2_1:+3911672 Msa0188700:CDS
GAGGCGGCTATCAGAATTCA+GGG 0.525246 2_1:+3911995 Msa0188700:CDS
CTCAACATATTCACGTGTGT+GGG 0.525787 2_1:-3909517 None:intergenic
GTGGGTTGGATCTGCCTCCA+AGG 0.528953 2_1:+3911776 Msa0188700:CDS
TCCCCTAAGGCTAACCATGC+GGG 0.529790 2_1:-3912067 None:intergenic
TGTTCTTGCACAGAATGTCC+AGG 0.530188 2_1:+3909566 Msa0188700:CDS
CTGAACTTTATTCTGGTGGA+CGG 0.530497 2_1:+3910099 Msa0188700:CDS
AAAAGCTTAGCAAGAAAGAC+AGG 0.531266 2_1:+3909040 Msa0188700:CDS
CTCTCCATTATCTCCCTCTA+CGG 0.531803 2_1:-3909709 None:intergenic
GTCCAGAATCTCGAAGCCAT+TGG 0.533546 2_1:-3908225 None:intergenic
GGGCTGGTTTCTGAAGCGCA+TGG 0.535363 2_1:+3910068 Msa0188700:CDS
CCACCTTCCCGGAAAATAGC+AGG 0.535658 2_1:+3909814 Msa0188700:CDS
GACTCATAAGCAACAGATCA+CGG 0.536368 2_1:-3909953 None:intergenic
AGAGGACGGGGAACGATTGG+AGG 0.536414 2_1:+3911976 Msa0188700:CDS
GACAGGCCTCCTGGTGATGA+TGG 0.536973 2_1:+3909000 Msa0188700:CDS
ATGCTATCAAGATCAATGAC+TGG 0.537887 2_1:+3908584 Msa0188700:CDS
TGTTGTTACCCCGGAACTTG+TGG 0.539965 2_1:+3909782 Msa0188700:CDS
CTGCCTCCAAGGCGAAGAGA+TGG 0.540348 2_1:+3911787 Msa0188700:CDS
CAAACATTGGGAGCTGGGAG+AGG 0.541139 2_1:-3912231 None:intergenic
TTGTCTGAACTTTATTCTGG+TGG 0.542410 2_1:+3910095 Msa0188700:CDS
AGGCAAGGCAGTGGACGTAC+AGG 0.542622 2_1:+3911895 Msa0188700:CDS
CAAGCTGGGATCAGCCAACT+GGG 0.543584 2_1:+3911632 Msa0188700:CDS
GTGGAACGTCTTCAGGTGGC+AGG 0.543676 2_1:+3911845 Msa0188700:CDS
AGTTCCGGGGTAACAACAAA+CGG 0.544060 2_1:-3909777 None:intergenic
TGAGGAGCTTCATGCAAGCT+GGG 0.544437 2_1:+3911618 Msa0188700:CDS
TAGGGAGAGTCCTGAGAGTG+AGG 0.545078 2_1:+3908855 Msa0188700:CDS
AATGCTGAAGGATAAAATCA+AGG 0.545420 2_1:+3911465 Msa0188700:CDS
TATGCCGCTGCAGCTGCTGG+TGG 0.547820 2_1:+3911817 Msa0188700:CDS
GGACTTGATTATCAAATGTA+GGG 0.548379 2_1:+3908837 Msa0188700:CDS
TCCTATTCTCAAACAAGGCA+AGG 0.549766 2_1:+3911880 Msa0188700:CDS
CTTCTGAGCTTGGTAATGAC+AGG 0.550457 2_1:+3908983 Msa0188700:CDS
CATAAAGGTTGATGATTCTG+TGG 0.552363 2_1:+3909368 Msa0188700:CDS
CCATAAATCAGAACAAACAT+TGG 0.552425 2_1:-3912244 None:intergenic
AGAATCATATGATGAAGAGA+AGG 0.556503 2_1:-3911515 None:intergenic
GAATTTCCGCCGCTTACTTG+AGG 0.559029 2_1:+3911282 Msa0188700:CDS
CCTGACAGTTTCAGGAGGAC+CGG 0.559804 2_1:-3911326 None:intergenic
CTTCTAAGGTAGCCTTGAAG+AGG 0.561694 2_1:+3909622 Msa0188700:CDS
TCTCAAACAAGGCAAGGCAG+TGG 0.563066 2_1:+3911886 Msa0188700:CDS
CAAAGAGATTCTGGAAGCCA+GGG 0.563451 2_1:+3909128 Msa0188700:CDS
TCTGGAAGCCAGGGGCAGGA+AGG 0.564829 2_1:+3909137 Msa0188700:CDS
AAGAGATGCAATAATGTCAA+AGG 0.567228 2_1:-3911401 None:intergenic
GCATTATCGTTCAGTCAAGC+TGG 0.568957 2_1:+3911934 Msa0188700:CDS
GTGTCCCATGTGATCTCACT+AGG 0.569429 2_1:-3909090 None:intergenic
GGACGGGGAACGATTGGAGG+CGG 0.571631 2_1:+3911979 Msa0188700:CDS
GGAGCATCGCCATCATCACC+AGG 0.573601 2_1:-3909009 None:intergenic
TGCCTCCAAGGCGAAGAGAT+GGG 0.574902 2_1:+3911788 Msa0188700:CDS
ACGCTTAGCATCATGAACAT+TGG 0.575475 2_1:-3911245 None:intergenic
ATCATGTTATGGCTGCCACA+AGG 0.575690 2_1:+3911350 Msa0188700:CDS
GGGAGAGTCCTGAGAGTGAG+GGG 0.577170 2_1:+3908857 Msa0188700:CDS
GTATCACTGATATACAAATA+CGG 0.579558 2_1:+3909855 Msa0188700:CDS
TTATTGCATCTCTTGAGGTG+TGG 0.579762 2_1:+3911410 Msa0188700:CDS
TCTCAACATATTCACGTGTG+TGG 0.579942 2_1:-3909518 None:intergenic
TGAACTTTATTCTGGTGGAC+GGG 0.580196 2_1:+3910100 Msa0188700:CDS
AGTGAGAAACAAACATTCAC+CGG 0.580815 2_1:+3911307 Msa0188700:CDS
CTGAAAATAATGCACCCAGT+TGG 0.581929 2_1:-3911646 None:intergenic
CGGTCCTCCTGAAACTGTCA+GGG 0.584556 2_1:+3911327 Msa0188700:CDS
AAAAGCCTAGTGAGATCACA+TGG 0.585381 2_1:+3909085 Msa0188700:CDS
AGGTTCAATGATCTCATCAT+CGG 0.587424 2_1:-3908920 None:intergenic
GTTGCTTCATAAACCTCATG+CGG 0.588345 2_1:-3909666 None:intergenic
GCTACAGAAGCAAGGTTAGG+CGG 0.590150 2_1:+3911751 Msa0188700:CDS
TGAGAATGAAACTAAGAAAG+GGG 0.591503 2_1:+3909398 Msa0188700:CDS
GTCAAGCACGAACTCCCCTA+AGG 0.592556 2_1:-3912080 None:intergenic
GGTTCATCATCAATATCAGT+GGG 0.592619 2_1:-3908385 None:intergenic
ACCACCACCAGCAGCTGCAG+CGG 0.592682 2_1:-3911821 None:intergenic
AGGTTCATCATCAATATCAG+TGG 0.593036 2_1:-3908386 None:intergenic
TTCTAAGGTAGCCTTGAAGA+GGG 0.593307 2_1:+3909623 Msa0188700:CDS
AGAGCTACAGAAGCAAGGTT+AGG 0.594295 2_1:+3911748 Msa0188700:CDS
GTGAAGGAATTGCTTGCGCA+AGG 0.594439 2_1:+3910122 Msa0188700:CDS
ACTCATAAGCAACAGATCAC+GGG 0.595404 2_1:-3909952 None:intergenic
AGATAATGGAGAGATGAGTG+AGG 0.595500 2_1:+3909719 Msa0188700:CDS
AAGCAAGGTTAGGCGGCGGT+GGG 0.595912 2_1:+3911758 Msa0188700:CDS
CATTTACTACAAACCGCATG+AGG 0.596878 2_1:+3909653 Msa0188700:CDS
TGCTATCAAGATCAATGACT+GGG 0.597590 2_1:+3908585 Msa0188700:CDS
AGGAAAGGTTGGAAAGAAGA+CGG 0.598493 2_1:+3911131 Msa0188700:intron
GGGAGTGGCGGCTATTCTAG+AGG 0.598572 2_1:+3911958 Msa0188700:CDS
TTTCCGCGCCACAAGTTCCG+GGG 0.599206 2_1:-3909790 None:intergenic
AGGGAGAGTCCTGAGAGTGA+GGG 0.600175 2_1:+3908856 Msa0188700:CDS
TTGGCTGAGATGACCGTAGA+GGG 0.603596 2_1:+3909696 Msa0188700:CDS
ATGAAAGAGCTACAGAAGCA+AGG 0.604351 2_1:+3911743 Msa0188700:CDS
AGTCAAGCTGGTGGGAGTGG+CGG 0.604909 2_1:+3911946 Msa0188700:CDS
GAAGGATAAAATCAAGGAGG+AGG 0.606776 2_1:+3911471 Msa0188700:CDS
GTGGCGGCTATTCTAGAGGA+CGG 0.606807 2_1:+3911962 Msa0188700:CDS
CAGGAAGCCGGAGCCCGTGT+CGG 0.608070 2_1:+3908951 Msa0188700:CDS
CGTAGATACTTCTACCCGCA+TGG 0.610484 2_1:+3912053 Msa0188700:CDS
GAATTCAGGGAGGACTCAAG+GGG 0.615559 2_1:+3912008 Msa0188700:CDS
GACAGTGACGACGACGATGA+TGG 0.616344 2_1:+3908487 Msa0188700:CDS
GGCGGCTATTCTAGAGGACG+GGG 0.620265 2_1:+3911964 Msa0188700:CDS
ACTTGTCCTATTCTCAAACA+AGG 0.620485 2_1:+3911875 Msa0188700:CDS
CTTCGTGTTAGTTTGTTGTG+TGG 0.622006 2_1:+3912330 Msa0188700:three_prime_UTR
ACAGAAGCAAGGTTAGGCGG+CGG 0.622574 2_1:+3911754 Msa0188700:CDS
TAACAACCAGACTAAACCAA+TGG 0.622757 2_1:+3908209 Msa0188700:exon
TCCATTAATAAGAACCCTTG+TGG 0.625098 2_1:-3911365 None:intergenic
TATTAGCAGAAGCCTGAGCA+AGG 0.625753 2_1:-3908726 None:intergenic
TCATGTTATGGCTGCCACAA+GGG 0.627218 2_1:+3911351 Msa0188700:CDS
CACTGACCTCAAGTAAGCGG+CGG 0.627273 2_1:-3911288 None:intergenic
GTCGTCACTGTCATCAACAA+CGG 0.633735 2_1:-3908476 None:intergenic
TATCGTTCAGTCAAGCTGGT+GGG 0.636549 2_1:+3911938 Msa0188700:CDS
GGACGTACAGGATACGGTGG+AGG 0.637438 2_1:+3911907 Msa0188700:CDS
GAACGTCTTCAGGTGGCAGG+TGG 0.637601 2_1:+3911848 Msa0188700:CDS
TTATCGTTCAGTCAAGCTGG+TGG 0.641328 2_1:+3911937 Msa0188700:CDS
AAGAAAGGGGATGACTATGA+CGG 0.642172 2_1:+3909411 Msa0188700:CDS
GTGTTCATAGTATTGTCAGT+AGG 0.642718 2_1:+3911584 Msa0188700:CDS
TCAACATATTCACGTGTGTG+GGG 0.645878 2_1:-3909516 None:intergenic
CACCGTGCTAGAAATGCTGA+AGG 0.646843 2_1:+3911453 Msa0188700:CDS
GGCTTCGAGATTCTGGACAC+AGG 0.648433 2_1:+3908230 Msa0188700:CDS
GAAGTTTCAGAATCCGACAC+GGG 0.650738 2_1:-3908964 None:intergenic
TATTAATGGAGATTTCCAGA+AGG 0.655339 2_1:+3911378 Msa0188700:CDS
AAAATGCGTGCAGAATATGC+TGG 0.655482 2_1:+3909314 Msa0188700:CDS
GGGGCAGGAAGGGAACTGGA+AGG 0.655940 2_1:+3909148 Msa0188700:CDS
GCAAGAAAATGTTCACCACA+TGG 0.657602 2_1:+3909980 Msa0188700:CDS
GGTAGTGGAACGTCTTCAGG+TGG 0.658306 2_1:+3911841 Msa0188700:CDS
TCTCACTGACCTCAAGTAAG+CGG 0.659845 2_1:-3911291 None:intergenic
CTCCCCTAAGGCTAACCATG+CGG 0.664230 2_1:-3912068 None:intergenic
TTACCCCGGAACTTGTGGCG+CGG 0.666773 2_1:+3909787 Msa0188700:CDS
CAAACTCATCAAGAAGAGCA+TGG 0.667504 2_1:-3909923 None:intergenic
GATGTTAATCCAGGCCTCAG+TGG 0.669943 2_1:+3909267 Msa0188700:CDS
CAGTAGGATGATGATCAATG+AGG 0.670922 2_1:+3911600 Msa0188700:CDS
GCTGCTGGAAGTTCCCAACA+TGG 0.671778 2_1:+3911219 Msa0188700:CDS
GGAGAGTCCTGAGAGTGAGG+GGG 0.672377 2_1:+3908858 Msa0188700:CDS
TGTGCAAGAACAACAAACTG+AGG 0.676475 2_1:-3909555 None:intergenic
GGCATATGCCCATAAATGTG+TGG 0.678845 2_1:+3909289 Msa0188700:CDS
GACGGACCCATTCATGTCTG+GGG 0.680909 2_1:+3909429 Msa0188700:CDS
TGAATATGTTGAGAGACTCA+GGG 0.682868 2_1:+3909527 Msa0188700:CDS
AGAAGTTTCAGAATCCGACA+CGG 0.685846 2_1:-3908965 None:intergenic
ATTGGCTGAGATGACCGTAG+AGG 0.686209 2_1:+3909695 Msa0188700:CDS
CTGACAATACTATGAACACG+AGG 0.689117 2_1:-3911580 None:intergenic
ATTCTTGATCTGATCAACAG+TGG 0.701566 2_1:-3908563 None:intergenic
AAAGAGATTCTGGAAGCCAG+GGG 0.701656 2_1:+3909129 Msa0188700:CDS
GCATCGCCATCATCACCAGG+AGG 0.707685 2_1:-3909006 None:intergenic
TGCGGGTAGAAGTATCTACG+TGG 0.710114 2_1:-3912050 None:intergenic
TGATCCCTGACAGTTTCAGG+AGG 0.717851 2_1:-3911331 None:intergenic
GCGGGTAGAAGTATCTACGT+GGG 0.720335 2_1:-3912049 None:intergenic
AATTCAGGGAGGACTCAAGG+GGG 0.722566 2_1:+3912009 Msa0188700:CDS
GCTGAAGGATAAAATCAAGG+AGG 0.734791 2_1:+3911468 Msa0188700:CDS
AAAGCCTAGTGAGATCACAT+GGG 0.747188 2_1:+3909086 Msa0188700:CDS
GAAGAACAATAAGCAATACG+AGG 0.757858 2_1:+3908816 Msa0188700:CDS
AGTGGACGTACAGGATACGG+TGG 0.758461 2_1:+3911904 Msa0188700:CDS
TTATGGGCATATGCCCACTG+AGG 0.770132 2_1:-3909281 None:intergenic
GCGGCTATCAGAATTCAGGG+AGG 0.799750 2_1:+3911998 Msa0188700:CDS
TTTGTGTCGAAATGTCCATG+TGG 0.823137 2_1:-3909995 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATAGAAAAAATAAA+AGG + chr2_1:3910353-3910372 Msa0188700:intron 10.0%
!! CAGAAATTAAATTTGATTAT+TGG + chr2_1:3910482-3910501 Msa0188700:intron 15.0%
!!! TATTTTCCTTTAATTTTCTA+TGG - chr2_1:3910663-3910682 None:intergenic 15.0%
!!! TAAATTTTTTTGAATTGAGT+GGG - chr2_1:3910734-3910753 None:intergenic 15.0%
!!! ATAAATTTTTTTGAATTGAG+TGG - chr2_1:3910735-3910754 None:intergenic 15.0%
!!! AAAAAATTTATTTTTGCCAT+TGG + chr2_1:3910744-3910763 Msa0188700:intron 15.0%
!!! TTGTTAATTTTTTTTCTTGA+GGG + chr2_1:3912304-3912323 Msa0188700:three_prime_UTR 15.0%
!! ATCTATTTGAAAAAAATAGC+CGG - chr2_1:3910198-3910217 None:intergenic 20.0%
!! TGTCAATGTAAAGATAAATA+AGG - chr2_1:3910402-3910421 None:intergenic 20.0%
!! TATAATATTATTGCTCAACT+TGG + chr2_1:3910449-3910468 Msa0188700:intron 20.0%
!!! TGTTTTTGTTTTTGTTTCTA+AGG + chr2_1:3910545-3910564 Msa0188700:intron 20.0%
!!! TTTTATTTTCATCTTGTTAC+TGG + chr2_1:3910579-3910598 Msa0188700:intron 20.0%
!!! TTTATTTTCATCTTGTTACT+GGG + chr2_1:3910580-3910599 Msa0188700:intron 20.0%
!! TATAAGCCATAGAAAATTAA+AGG + chr2_1:3910654-3910673 Msa0188700:intron 20.0%
!!! AAATTTTTTTGAATTGAGTG+GGG - chr2_1:3910733-3910752 None:intergenic 20.0%
!! CTATTCTTTAATTATCTTTC+AGG + chr2_1:3911111-3911130 Msa0188700:intron 20.0%
!! AGATTTATATGCATATGATA+TGG - chr2_1:3911163-3911182 None:intergenic 20.0%
!! TAATAAACTGGTAAAAGAAA+AGG - chr2_1:3912141-3912160 None:intergenic 20.0%
!! TTAAGTGCATAATAATAAAC+TGG - chr2_1:3912153-3912172 None:intergenic 20.0%
!! ATTTCAGATGAAATTTCTTT+GGG + chr2_1:3912185-3912204 Msa0188700:three_prime_UTR 20.0%
!!! CTTGTTAATTTTTTTTCTTG+AGG + chr2_1:3912303-3912322 Msa0188700:three_prime_UTR 20.0%
!!! TGTTAATTTTTTTTCTTGAG+GGG + chr2_1:3912305-3912324 Msa0188700:three_prime_UTR 20.0%
!!! CATTTTTTCCACACATTTAT+GGG - chr2_1:3909300-3909319 None:intergenic 25.0%
! AATCATCAACCTTTATGTTT+GGG - chr2_1:3909365-3909384 None:intergenic 25.0%
! ATGAGAATGAAACTAAGAAA+GGG + chr2_1:3909397-3909416 Msa0188700:CDS 25.0%
! GTATCACTGATATACAAATA+CGG + chr2_1:3909855-3909874 Msa0188700:CDS 25.0%
!!! GACACAAATACTTTTTAACA+GGG + chr2_1:3910010-3910029 Msa0188700:CDS 25.0%
! TCTATTTGAAAAAAATAGCC+GGG - chr2_1:3910197-3910216 None:intergenic 25.0%
!! CTTTATTAATGTACTTGTTG+TGG + chr2_1:3910232-3910251 Msa0188700:intron 25.0%
! AGAAAAAATAAAAGGTGATC+TGG + chr2_1:3910361-3910380 Msa0188700:intron 25.0%
!! TTATTTTCATCTTGTTACTG+GGG + chr2_1:3910581-3910600 Msa0188700:intron 25.0%
! TTTCTATGGCTTATACAATA+GGG - chr2_1:3910649-3910668 None:intergenic 25.0%
!! TTTTCTATGGCTTATACAAT+AGG - chr2_1:3910650-3910669 None:intergenic 25.0%
! TTTCAGTTATGCTAAAAGTA+AGG - chr2_1:3910796-3910815 None:intergenic 25.0%
!! TAATCGTAATCCGAAATTTT+GGG - chr2_1:3910958-3910977 None:intergenic 25.0%
!! ATAATCGTAATCCGAAATTT+TGG - chr2_1:3910959-3910978 None:intergenic 25.0%
!! CATACTTCATATTGGATTTT+TGG + chr2_1:3911012-3911031 Msa0188700:intron 25.0%
! CTTTAATTATCTTTCAGGAA+AGG + chr2_1:3911116-3911135 Msa0188700:intron 25.0%
! ATCATATGATTCTTTCAGTT+TGG + chr2_1:3911525-3911544 Msa0188700:CDS 25.0%
! GATTTCAGATGAAATTTCTT+TGG + chr2_1:3912184-3912203 Msa0188700:three_prime_UTR 25.0%
! CATAAATCAGAACAAACATT+GGG - chr2_1:3912246-3912265 None:intergenic 25.0%
CTGGTTGTTATGAGAATTTA+GGG - chr2_1:3908199-3908218 None:intergenic 30.0%
TCTGGTTGTTATGAGAATTT+AGG - chr2_1:3908200-3908219 None:intergenic 30.0%
! CTATTAGCTGTATTGTTGTT+GGG - chr2_1:3908439-3908458 None:intergenic 30.0%
TCTATTAGCTGTATTGTTGT+TGG - chr2_1:3908440-3908459 None:intergenic 30.0%
! GTAAAGATTAGGGATCTTTT+GGG - chr2_1:3908677-3908696 None:intergenic 30.0%
! TGTAAAGATTAGGGATCTTT+TGG - chr2_1:3908678-3908697 None:intergenic 30.0%
!!! TTTTTGCTTCATTGAGTTGA+AGG - chr2_1:3908791-3908810 None:intergenic 30.0%
AGGACTTGATTATCAAATGT+AGG + chr2_1:3908836-3908855 Msa0188700:CDS 30.0%
GGACTTGATTATCAAATGTA+GGG + chr2_1:3908837-3908856 Msa0188700:CDS 30.0%
! TTTAGCAACTTTTGTTAGGA+AGG - chr2_1:3909196-3909215 None:intergenic 30.0%
!!! GTGTTTTAGCAACTTTTGTT+AGG - chr2_1:3909200-3909219 None:intergenic 30.0%
!!! GCATTTTTTCCACACATTTA+TGG - chr2_1:3909301-3909320 None:intergenic 30.0%
GAATCATCAACCTTTATGTT+TGG - chr2_1:3909366-3909385 None:intergenic 30.0%
GATGAGAATGAAACTAAGAA+AGG + chr2_1:3909396-3909415 Msa0188700:CDS 30.0%
TGAGAATGAAACTAAGAAAG+GGG + chr2_1:3909398-3909417 Msa0188700:CDS 30.0%
AGATTTCAAAGCTTCTTCTA+AGG + chr2_1:3909608-3909627 Msa0188700:CDS 30.0%
TTATGAAGCAACGAGAAAAT+TGG + chr2_1:3909677-3909696 Msa0188700:CDS 30.0%
TGATACTAACACATCCATTA+AGG - chr2_1:3909841-3909860 None:intergenic 30.0%
!! CGACACAAATACTTTTTAAC+AGG + chr2_1:3910009-3910028 Msa0188700:CDS 30.0%
TGTTTGTCTGAACTTTATTC+TGG + chr2_1:3910092-3910111 Msa0188700:CDS 30.0%
ATCTTTACATTGACATTGAG+TGG + chr2_1:3910407-3910426 Msa0188700:intron 30.0%
TCTTTACATTGACATTGAGT+GGG + chr2_1:3910408-3910427 Msa0188700:intron 30.0%
! TATTTTCATCTTGTTACTGG+GGG + chr2_1:3910582-3910601 Msa0188700:intron 30.0%
!! TATTTTTGCCATTGGTAGTT+CGG + chr2_1:3910752-3910771 Msa0188700:intron 30.0%
TAGCATAACTGAAATTGATG+AGG + chr2_1:3910802-3910821 Msa0188700:intron 30.0%
AGCATAACTGAAATTGATGA+GGG + chr2_1:3910803-3910822 Msa0188700:intron 30.0%
ATGTTCAAACCCCAAAATTT+CGG + chr2_1:3910945-3910964 Msa0188700:intron 30.0%
! AATCGTAATCCGAAATTTTG+GGG - chr2_1:3910957-3910976 None:intergenic 30.0%
GTGAATACCACAAACAATAA+AGG + chr2_1:3910987-3911006 Msa0188700:intron 30.0%
TAAAGGCTCATACTTCATAT+TGG + chr2_1:3911004-3911023 Msa0188700:intron 30.0%
!! GGATTTTTGGAAATCCTAAT+CGG + chr2_1:3911025-3911044 Msa0188700:intron 30.0%
AATTATCTTTCAGGAAAGGT+TGG + chr2_1:3911120-3911139 Msa0188700:intron 30.0%
TATTAATGGAGATTTCCAGA+AGG + chr2_1:3911378-3911397 Msa0188700:CDS 30.0%
AAGAGATGCAATAATGTCAA+AGG - chr2_1:3911404-3911423 None:intergenic 30.0%
AATGCTGAAGGATAAAATCA+AGG + chr2_1:3911465-3911484 Msa0188700:CDS 30.0%
ATGATGAAGAGAAGGTAAAT+AGG - chr2_1:3911510-3911529 None:intergenic 30.0%
AGAATCATATGATGAAGAGA+AGG - chr2_1:3911518-3911537 None:intergenic 30.0%
TAGATAATTTCTCAGTCAAC+TGG - chr2_1:3911708-3911727 None:intergenic 30.0%
TATGCACTTAATCTAGATTC+TGG + chr2_1:3912162-3912181 Msa0188700:three_prime_UTR 30.0%
CCATAAATCAGAACAAACAT+TGG - chr2_1:3912247-3912266 None:intergenic 30.0%
CCAATGTTTGTTCTGATTTA+TGG + chr2_1:3912244-3912263 Msa0188700:three_prime_UTR 30.0%
TAACAACCAGACTAAACCAA+TGG + chr2_1:3908209-3908228 Msa0188700:exon 35.0%
TGAATAAACACACAGAGAGA+CGG - chr2_1:3908307-3908326 None:intergenic 35.0%
GGTTCATCATCAATATCAGT+GGG - chr2_1:3908388-3908407 None:intergenic 35.0%
AGGTTCATCATCAATATCAG+TGG - chr2_1:3908389-3908408 None:intergenic 35.0%
! CAGATTTAACAACACGCTTT+TGG - chr2_1:3908513-3908532 None:intergenic 35.0%
!! AGATAAGCGTTTTGATGAGA+TGG + chr2_1:3908537-3908556 Msa0188700:CDS 35.0%
ATTCTTGATCTGATCAACAG+TGG - chr2_1:3908566-3908585 None:intergenic 35.0%
ATGCTATCAAGATCAATGAC+TGG + chr2_1:3908584-3908603 Msa0188700:CDS 35.0%
TGCTATCAAGATCAATGACT+GGG + chr2_1:3908585-3908604 Msa0188700:CDS 35.0%
GATCCCTAATCTTTACATCA+AGG + chr2_1:3908681-3908700 Msa0188700:CDS 35.0%
GAGCCTTGATGTAAAGATTA+GGG - chr2_1:3908687-3908706 None:intergenic 35.0%
AGAGCCTTGATGTAAAGATT+AGG - chr2_1:3908688-3908707 None:intergenic 35.0%
GAAGAACAATAAGCAATACG+AGG + chr2_1:3908816-3908835 Msa0188700:CDS 35.0%
AGGTTCAATGATCTCATCAT+CGG - chr2_1:3908923-3908942 None:intergenic 35.0%
AAAAGCTTAGCAAGAAAGAC+AGG + chr2_1:3909040-3909059 Msa0188700:CDS 35.0%
CAAGAAGTTCAAAGAGATTC+TGG + chr2_1:3909119-3909138 Msa0188700:CDS 35.0%
!! CATAAAGGTTGATGATTCTG+TGG + chr2_1:3909368-3909387 Msa0188700:CDS 35.0%
TGAATATGTTGAGAGACTCA+GGG + chr2_1:3909527-3909546 Msa0188700:CDS 35.0%
CAATGCTTTCAAGATATTCC+TGG - chr2_1:3909587-3909606 None:intergenic 35.0%
! CAGGAATATCTTGAAAGCAT+TGG + chr2_1:3909585-3909604 Msa0188700:CDS 35.0%
! TGAGGAGTTAAAAGGTTTTG+AGG + chr2_1:3909737-3909756 Msa0188700:CDS 35.0%
!!! ATTAAGGTCCTGCTATTTTC+CGG - chr2_1:3909825-3909844 None:intergenic 35.0%
! AGTTAGGTCTATGTGCTTTT+CGG + chr2_1:3910042-3910061 Msa0188700:CDS 35.0%
TTGTCTGAACTTTATTCTGG+TGG + chr2_1:3910095-3910114 Msa0188700:CDS 35.0%
! CTGGAGTCTTTTCATGATAA+CGG - chr2_1:3910160-3910179 None:intergenic 35.0%
CAAATAGATGTCTCATAGCA+TGG + chr2_1:3910209-3910228 Msa0188700:intron 35.0%
ATCAGATACAATGTAAGCAC+CGG - chr2_1:3910269-3910288 None:intergenic 35.0%
!! TTTCTTTAGAGCAGTGACAT+TGG - chr2_1:3910317-3910336 None:intergenic 35.0%
CTTTACATTGACATTGAGTG+GGG + chr2_1:3910409-3910428 Msa0188700:intron 35.0%
! GTGGGGATTAATCAATTTTG+AGG + chr2_1:3910426-3910445 Msa0188700:intron 35.0%
TGTTAAACTCATAGAGCATG+AGG + chr2_1:3910687-3910706 Msa0188700:intron 35.0%
GTTAAACTCATAGAGCATGA+GGG + chr2_1:3910688-3910707 Msa0188700:intron 35.0%
TTAAACTCATAGAGCATGAG+GGG + chr2_1:3910689-3910708 Msa0188700:intron 35.0%
AAAAGTAAGGCACACTTTGT+TGG - chr2_1:3910783-3910802 None:intergenic 35.0%
! CATGCTCTTATTTCACTACA+TGG - chr2_1:3910853-3910872 None:intergenic 35.0%
! TCACAGAAAGTTTTCTGTCT+TGG + chr2_1:3910921-3910940 Msa0188700:intron 35.0%
GTATGAGCCTTTATTGTTTG+TGG - chr2_1:3910997-3911016 None:intergenic 35.0%
! TTTGCCGTATTTCTATCTAC+CGG + chr2_1:3911053-3911072 Msa0188700:intron 35.0%
AGTGAGAAACAAACATTCAC+CGG + chr2_1:3911307-3911326 Msa0188700:CDS 35.0%
TCCATTAATAAGAACCCTTG+TGG - chr2_1:3911368-3911387 None:intergenic 35.0%
TGACATTATTGCATCTCTTG+AGG + chr2_1:3911405-3911424 Msa0188700:CDS 35.0%
GTGTTCATAGTATTGTCAGT+AGG + chr2_1:3911584-3911603 Msa0188700:CDS 35.0%
TCAGAAATGTTGAACTCTCA+AGG + chr2_1:3911665-3911684 Msa0188700:CDS 35.0%
CAGAAATGTTGAACTCTCAA+GGG + chr2_1:3911666-3911685 Msa0188700:CDS 35.0%
ACTTGTCCTATTCTCAAACA+AGG + chr2_1:3911875-3911894 Msa0188700:CDS 35.0%
TTGTTGGGTTCATCATCAAC+GGG - chr2_1:3908424-3908443 None:intergenic 40.0%
GTTGTTGGGTTCATCATCAA+CGG - chr2_1:3908425-3908444 None:intergenic 40.0%
!! CTTCATTGAGTTGAAGGCTT+TGG - chr2_1:3908785-3908804 None:intergenic 40.0%
AGAAGTTTCAGAATCCGACA+CGG - chr2_1:3908968-3908987 None:intergenic 40.0%
!! GATTCTGAAACTTCTGAGCT+TGG + chr2_1:3908973-3908992 Msa0188700:CDS 40.0%
! TTGCTAAGCTTTTGATCCCA+AGG - chr2_1:3909033-3909052 None:intergenic 40.0%
! TAGCAAGAAAGACAGGCTTT+TGG + chr2_1:3909047-3909066 Msa0188700:CDS 40.0%
AAAAGCCTAGTGAGATCACA+TGG + chr2_1:3909085-3909104 Msa0188700:CDS 40.0%
AAAGCCTAGTGAGATCACAT+GGG + chr2_1:3909086-3909105 Msa0188700:CDS 40.0%
GCTCAGTTTGATGTTAATCC+AGG + chr2_1:3909258-3909277 Msa0188700:CDS 40.0%
AAAATGCGTGCAGAATATGC+TGG + chr2_1:3909314-3909333 Msa0188700:CDS 40.0%
AAGAAAGGGGATGACTATGA+CGG + chr2_1:3909411-3909430 Msa0188700:CDS 40.0%
CTGCAAGCTCTTGAAAAACT+CGG - chr2_1:3909487-3909506 None:intergenic 40.0%
TCAACATATTCACGTGTGTG+GGG - chr2_1:3909519-3909538 None:intergenic 40.0%
CTCAACATATTCACGTGTGT+GGG - chr2_1:3909520-3909539 None:intergenic 40.0%
TCTCAACATATTCACGTGTG+TGG - chr2_1:3909521-3909540 None:intergenic 40.0%
GTGAATATGTTGAGAGACTC+AGG + chr2_1:3909526-3909545 Msa0188700:CDS 40.0%
TGTGCAAGAACAACAAACTG+AGG - chr2_1:3909558-3909577 None:intergenic 40.0%
!! TTCTAAGGTAGCCTTGAAGA+GGG + chr2_1:3909623-3909642 Msa0188700:CDS 40.0%
AATGAGTTCAACCCTCTTCA+AGG - chr2_1:3909637-3909656 None:intergenic 40.0%
CATTTACTACAAACCGCATG+AGG + chr2_1:3909653-3909672 Msa0188700:CDS 40.0%
GTTGCTTCATAAACCTCATG+CGG - chr2_1:3909669-3909688 None:intergenic 40.0%
!! AGATAATGGAGAGATGAGTG+AGG + chr2_1:3909719-3909738 Msa0188700:CDS 40.0%
GAGATGAGTGAGGAGTTAAA+AGG + chr2_1:3909729-3909748 Msa0188700:CDS 40.0%
!!! TTAAGGTCCTGCTATTTTCC+GGG - chr2_1:3909824-3909843 None:intergenic 40.0%
GGAAAATAGCAGGACCTTAA+TGG + chr2_1:3909824-3909843 Msa0188700:CDS 40.0%
CAAACTCATCAAGAAGAGCA+TGG - chr2_1:3909926-3909945 None:intergenic 40.0%
ACTCATAAGCAACAGATCAC+GGG - chr2_1:3909955-3909974 None:intergenic 40.0%
GACTCATAAGCAACAGATCA+CGG - chr2_1:3909956-3909975 None:intergenic 40.0%
GCAAGAAAATGTTCACCACA+TGG + chr2_1:3909980-3909999 Msa0188700:CDS 40.0%
TTTGTGTCGAAATGTCCATG+TGG - chr2_1:3909998-3910017 None:intergenic 40.0%
! GTTAGGTCTATGTGCTTTTC+GGG + chr2_1:3910043-3910062 Msa0188700:CDS 40.0%
CTGAACTTTATTCTGGTGGA+CGG + chr2_1:3910099-3910118 Msa0188700:CDS 40.0%
! TGAACTTTATTCTGGTGGAC+GGG + chr2_1:3910100-3910119 Msa0188700:CDS 40.0%
TCATGAAAAGACTCCAGAAC+AGG + chr2_1:3910163-3910182 Msa0188700:CDS 40.0%
GAATTGAGTGGGGTAAGAAA+AGG - chr2_1:3910723-3910742 None:intergenic 40.0%
! TTGCCGTATTTCTATCTACC+GGG + chr2_1:3911054-3911073 Msa0188700:intron 40.0%
TGACCCGGTAGATAGAAATA+CGG - chr2_1:3911060-3911079 None:intergenic 40.0%
AGGAAAGGTTGGAAAGAAGA+CGG + chr2_1:3911131-3911150 Msa0188700:intron 40.0%
GCATATAAATCTTGAGCTCC+TGG + chr2_1:3911171-3911190 Msa0188700:CDS 40.0%
!! ATGTAAGATGCACTGATTCC+AGG - chr2_1:3911192-3911211 None:intergenic 40.0%
ACGCTTAGCATCATGAACAT+TGG - chr2_1:3911248-3911267 None:intergenic 40.0%
AACTGTCAGGGATCATGTTA+TGG + chr2_1:3911339-3911358 Msa0188700:CDS 40.0%
GCCACAAGGGTTCTTATTAA+TGG + chr2_1:3911364-3911383 Msa0188700:CDS 40.0%
CAATAATGTCAAAGGCCTTC+TGG - chr2_1:3911396-3911415 None:intergenic 40.0%
TTATTGCATCTCTTGAGGTG+TGG + chr2_1:3911410-3911429 Msa0188700:CDS 40.0%
!! ATCCTTCAGCATTTCTAGCA+CGG - chr2_1:3911458-3911477 None:intergenic 40.0%
GCTGAAGGATAAAATCAAGG+AGG + chr2_1:3911468-3911487 Msa0188700:CDS 40.0%
GAAGGATAAAATCAAGGAGG+AGG + chr2_1:3911471-3911490 Msa0188700:CDS 40.0%
CTGACAATACTATGAACACG+AGG - chr2_1:3911583-3911602 None:intergenic 40.0%
CAGTAGGATGATGATCAATG+AGG + chr2_1:3911600-3911619 Msa0188700:CDS 40.0%
CTGAAAATAATGCACCCAGT+TGG - chr2_1:3911649-3911668 None:intergenic 40.0%
ATGAAAGAGCTACAGAAGCA+AGG + chr2_1:3911743-3911762 Msa0188700:CDS 40.0%
TCCTATTCTCAAACAAGGCA+AGG + chr2_1:3911880-3911899 Msa0188700:CDS 40.0%
!! CTTCGTGTTAGTTTGTTGTG+TGG + chr2_1:3912330-3912349 Msa0188700:three_prime_UTR 40.0%
!!! GGTTTTGTTTTGCGCGATGA+AGG - chr2_1:3908178-3908197 None:intergenic 45.0%
!! TCGAAGCCATTGGTTTAGTC+TGG - chr2_1:3908218-3908237 None:intergenic 45.0%
AACCAATGGCTTCGAGATTC+TGG + chr2_1:3908223-3908242 Msa0188700:exon 45.0%
! TCAACGGGTTCAGTATCGTT+AGG - chr2_1:3908409-3908428 None:intergenic 45.0%
!! CAACAACGGGTTTGGTTTGT+AGG - chr2_1:3908465-3908484 None:intergenic 45.0%
! ACTGTCATCAACAACGGGTT+TGG - chr2_1:3908473-3908492 None:intergenic 45.0%
TCGTCACTGTCATCAACAAC+GGG - chr2_1:3908478-3908497 None:intergenic 45.0%
GTCGTCACTGTCATCAACAA+CGG - chr2_1:3908479-3908498 None:intergenic 45.0%
GCTTGAAGATTTCCTTGCTC+AGG + chr2_1:3908714-3908733 Msa0188700:CDS 45.0%
TATTAGCAGAAGCCTGAGCA+AGG - chr2_1:3908729-3908748 None:intergenic 45.0%
TGCTCAGGCTTCTGCTAATA+AGG + chr2_1:3908729-3908748 Msa0188700:CDS 45.0%
! TTGAAGGCTTTGGCATTGCT+GGG - chr2_1:3908775-3908794 None:intergenic 45.0%
TCATTGAACCTGATCAGCTC+AGG + chr2_1:3908932-3908951 Msa0188700:CDS 45.0%
GAAGTTTCAGAATCCGACAC+GGG - chr2_1:3908967-3908986 None:intergenic 45.0%
!! CTTCTGAGCTTGGTAATGAC+AGG + chr2_1:3908983-3909002 Msa0188700:CDS 45.0%
! TCAAAGAGATTCTGGAAGCC+AGG + chr2_1:3909127-3909146 Msa0188700:CDS 45.0%
! CAAAGAGATTCTGGAAGCCA+GGG + chr2_1:3909128-3909147 Msa0188700:CDS 45.0%
! AAAGAGATTCTGGAAGCCAG+GGG + chr2_1:3909129-3909148 Msa0188700:CDS 45.0%
! GCTGCAGATTCTTTTCAGTG+TGG + chr2_1:3909230-3909249 Msa0188700:CDS 45.0%
ATGTTAATCCAGGCCTCAGT+GGG + chr2_1:3909268-3909287 Msa0188700:CDS 45.0%
GGCATATGCCCATAAATGTG+TGG + chr2_1:3909289-3909308 Msa0188700:CDS 45.0%
AAGTTGCCCCAGACATGAAT+GGG - chr2_1:3909438-3909457 None:intergenic 45.0%
TAAGTTGCCCCAGACATGAA+TGG - chr2_1:3909439-3909458 None:intergenic 45.0%
TGTTCTTGCACAGAATGTCC+AGG + chr2_1:3909566-3909585 Msa0188700:CDS 45.0%
!! CTTCTAAGGTAGCCTTGAAG+AGG + chr2_1:3909622-3909641 Msa0188700:CDS 45.0%
ATGACCGTAGAGGGAGATAA+TGG + chr2_1:3909705-3909724 Msa0188700:CDS 45.0%
CTCTCCATTATCTCCCTCTA+CGG - chr2_1:3909712-3909731 None:intergenic 45.0%
AGTTCCGGGGTAACAACAAA+CGG - chr2_1:3909780-3909799 None:intergenic 45.0%
AACAGGGCTATGTCACAGTT+AGG + chr2_1:3910026-3910045 Msa0188700:CDS 45.0%
!!! GTCTATGTGCTTTTCGGGTT+GGG + chr2_1:3910048-3910067 Msa0188700:CDS 45.0%
CCAGAACAGGTACTAAATCC+CGG + chr2_1:3910176-3910195 Msa0188700:intron 45.0%
TGTTGTGGTCAAGTGCATAC+CGG + chr2_1:3910247-3910266 Msa0188700:intron 45.0%
TTTCATCTTGTTACTGGGGG+AGG + chr2_1:3910585-3910604 Msa0188700:intron 45.0%
TTCATCTTGTTACTGGGGGA+GGG + chr2_1:3910586-3910605 Msa0188700:intron 45.0%
! TTGCCATTGGTAGTTCGGTT+TGG + chr2_1:3910757-3910776 Msa0188700:intron 45.0%
! TACGGCAAAAGTTGCCGATT+AGG - chr2_1:3911042-3911061 None:intergenic 45.0%
GATTAAACCCTCACATGACC+CGG - chr2_1:3911075-3911094 None:intergenic 45.0%
TCTTACATCTGCTATGCTGC+TGG + chr2_1:3911204-3911223 Msa0188700:CDS 45.0%
! TGAACATTGGCTGCCATGTT+GGG - chr2_1:3911235-3911254 None:intergenic 45.0%
! ATGAACATTGGCTGCCATGT+TGG - chr2_1:3911236-3911255 None:intergenic 45.0%
TCTCACTGACCTCAAGTAAG+CGG - chr2_1:3911294-3911313 None:intergenic 45.0%
ACATGATCCCTGACAGTTTC+AGG - chr2_1:3911337-3911356 None:intergenic 45.0%
ATCATGTTATGGCTGCCACA+AGG + chr2_1:3911350-3911369 Msa0188700:CDS 45.0%
TCATGTTATGGCTGCCACAA+GGG + chr2_1:3911351-3911370 Msa0188700:CDS 45.0%
AGAGCTACAGAAGCAAGGTT+AGG + chr2_1:3911748-3911767 Msa0188700:CDS 45.0%
!! GCCTTGCCTTGTTTGAGAAT+AGG - chr2_1:3911884-3911903 None:intergenic 45.0%
GCATTATCGTTCAGTCAAGC+TGG + chr2_1:3911934-3911953 Msa0188700:CDS 45.0%
TTATCGTTCAGTCAAGCTGG+TGG + chr2_1:3911937-3911956 Msa0188700:CDS 45.0%
TATCGTTCAGTCAAGCTGGT+GGG + chr2_1:3911938-3911957 Msa0188700:CDS 45.0%
AGAATTCAGGGAGGACTCAA+GGG + chr2_1:3912007-3912026 Msa0188700:CDS 45.0%
TCAAGGGGGTTCAACATTGA+GGG + chr2_1:3912023-3912042 Msa0188700:CDS 45.0%
CAGAACAAACATTGGGAGCT+GGG - chr2_1:3912239-3912258 None:intergenic 45.0%
TCAGAACAAACATTGGGAGC+TGG - chr2_1:3912240-3912259 None:intergenic 45.0%
!! TTATTATTATTATTATTCTT+AGG + chr2_1:3908336-3908355 Msa0188700:intron 5.0%
!! TATTATTATTATTATTCTTA+GGG + chr2_1:3908337-3908356 Msa0188700:intron 5.0%
GTCCAGAATCTCGAAGCCAT+TGG - chr2_1:3908228-3908247 None:intergenic 50.0%
GCTGGGACTCATCTTCTTCT+TGG - chr2_1:3908758-3908777 None:intergenic 50.0%
! GTTGAAGGCTTTGGCATTGC+TGG - chr2_1:3908776-3908795 None:intergenic 50.0%
GGAAAAGGATGACGAGGATG+AGG + chr2_1:3908879-3908898 Msa0188700:CDS 50.0%
!! TGATGATGGCGATGCTCCTT+GGG + chr2_1:3909014-3909033 Msa0188700:CDS 50.0%
GTGTCCCATGTGATCTCACT+AGG - chr2_1:3909093-3909112 None:intergenic 50.0%
GGGAACTGGAAGGTTTGAAC+AGG + chr2_1:3909158-3909177 Msa0188700:CDS 50.0%
AGAATCTGCAGCTTCTGAGC+AGG - chr2_1:3909222-3909241 None:intergenic 50.0%
GATGTTAATCCAGGCCTCAG+TGG + chr2_1:3909267-3909286 Msa0188700:CDS 50.0%
TTATGGGCATATGCCCACTG+AGG - chr2_1:3909284-3909303 None:intergenic 50.0%
CGTGCAGCACCCAAACATAA+AGG + chr2_1:3909353-3909372 Msa0188700:CDS 50.0%
!! ATGACGGACCCATTCATGTC+TGG + chr2_1:3909427-3909446 Msa0188700:CDS 50.0%
! TGACGGACCCATTCATGTCT+GGG + chr2_1:3909428-3909447 Msa0188700:CDS 50.0%
ATTGGCTGAGATGACCGTAG+AGG + chr2_1:3909695-3909714 Msa0188700:CDS 50.0%
TTGGCTGAGATGACCGTAGA+GGG + chr2_1:3909696-3909715 Msa0188700:CDS 50.0%
!! TGCTCCGTTTGTTGTTACCC+CGG + chr2_1:3909773-3909792 Msa0188700:CDS 50.0%
TGTTGTTACCCCGGAACTTG+TGG + chr2_1:3909782-3909801 Msa0188700:CDS 50.0%
!!! CTGCTATTTTCCGGGAAGGT+GGG - chr2_1:3909816-3909835 None:intergenic 50.0%
!!! GGTCTATGTGCTTTTCGGGT+TGG + chr2_1:3910047-3910066 Msa0188700:CDS 50.0%
! TTATTCTGGTGGACGGGTGA+AGG + chr2_1:3910106-3910125 Msa0188700:CDS 50.0%
GTGAAGGAATTGCTTGCGCA+AGG + chr2_1:3910122-3910141 Msa0188700:CDS 50.0%
CCGGGATTTAGTACCTGTTC+TGG - chr2_1:3910179-3910198 None:intergenic 50.0%
TCATCTTGTTACTGGGGGAG+GGG + chr2_1:3910587-3910606 Msa0188700:intron 50.0%
TGGCCAAACCGAACTACCAA+TGG - chr2_1:3910763-3910782 None:intergenic 50.0%
TCTATCTACCGGGTCATGTG+AGG + chr2_1:3911064-3911083 Msa0188700:intron 50.0%
CTATCTACCGGGTCATGTGA+GGG + chr2_1:3911065-3911084 Msa0188700:intron 50.0%
GAATTTCCGCCGCTTACTTG+AGG + chr2_1:3911282-3911301 Msa0188700:CDS 50.0%
TGATCCCTGACAGTTTCAGG+AGG - chr2_1:3911334-3911353 None:intergenic 50.0%
CACCGTGCTAGAAATGCTGA+AGG + chr2_1:3911453-3911472 Msa0188700:CDS 50.0%
!! AAATCAAGGAGGAGGCGCTT+AGG + chr2_1:3911479-3911498 Msa0188700:CDS 50.0%
ATGAGGAGCTTCATGCAAGC+TGG + chr2_1:3911617-3911636 Msa0188700:CDS 50.0%
TGAGGAGCTTCATGCAAGCT+GGG + chr2_1:3911618-3911637 Msa0188700:CDS 50.0%
! TGTTGAACTCTCAAGGGTGC+AGG + chr2_1:3911672-3911691 Msa0188700:CDS 50.0%
GCTACAGAAGCAAGGTTAGG+CGG + chr2_1:3911751-3911770 Msa0188700:CDS 50.0%
TCTCAAACAAGGCAAGGCAG+TGG + chr2_1:3911886-3911905 Msa0188700:CDS 50.0%
GAGGCGGCTATCAGAATTCA+GGG + chr2_1:3911995-3912014 Msa0188700:CDS 50.0%
CAGAATTCAGGGAGGACTCA+AGG + chr2_1:3912006-3912025 Msa0188700:CDS 50.0%
GAATTCAGGGAGGACTCAAG+GGG + chr2_1:3912008-3912027 Msa0188700:CDS 50.0%
AATTCAGGGAGGACTCAAGG+GGG + chr2_1:3912009-3912028 Msa0188700:CDS 50.0%
CTCAAGGGGGTTCAACATTG+AGG + chr2_1:3912022-3912041 Msa0188700:CDS 50.0%
CAAGGGGGTTCAACATTGAG+GGG + chr2_1:3912024-3912043 Msa0188700:CDS 50.0%
!! GCGGGTAGAAGTATCTACGT+GGG - chr2_1:3912052-3912071 None:intergenic 50.0%
!! TGCGGGTAGAAGTATCTACG+TGG - chr2_1:3912053-3912072 None:intergenic 50.0%
CGTAGATACTTCTACCCGCA+TGG + chr2_1:3912053-3912072 Msa0188700:CDS 50.0%
!! TACCCGCATGGTTAGCCTTA+GGG + chr2_1:3912065-3912084 Msa0188700:CDS 50.0%
GGCTTCGAGATTCTGGACAC+AGG + chr2_1:3908230-3908249 Msa0188700:CDS 55.0%
GACAGTGACGACGACGATGA+TGG + chr2_1:3908487-3908506 Msa0188700:CDS 55.0%
TAGGGAGAGTCCTGAGAGTG+AGG + chr2_1:3908855-3908874 Msa0188700:CDS 55.0%
AGGGAGAGTCCTGAGAGTGA+GGG + chr2_1:3908856-3908875 Msa0188700:CDS 55.0%
TCCTGAGAGTGAGGGGGAAA+AGG + chr2_1:3908864-3908883 Msa0188700:CDS 55.0%
! TCCTTTTCCCCCTCACTCTC+AGG - chr2_1:3908868-3908887 None:intergenic 55.0%
TGAGGGGGAAAAGGATGACG+AGG + chr2_1:3908873-3908892 Msa0188700:CDS 55.0%
ACCTGATCAGCTCAGGAAGC+CGG + chr2_1:3908939-3908958 Msa0188700:CDS 55.0%
!! CTTGGTAATGACAGGCCTCC+TGG + chr2_1:3908991-3909010 Msa0188700:CDS 55.0%
!! GTGATGATGGCGATGCTCCT+TGG + chr2_1:3909013-3909032 Msa0188700:CDS 55.0%
GACGGACCCATTCATGTCTG+GGG + chr2_1:3909429-3909448 Msa0188700:CDS 55.0%
!!! CCTGCTATTTTCCGGGAAGG+TGG - chr2_1:3909817-3909836 None:intergenic 55.0%
CCACCTTCCCGGAAAATAGC+AGG + chr2_1:3909814-3909833 Msa0188700:CDS 55.0%
!!! GGTCCTGCTATTTTCCGGGA+AGG - chr2_1:3909820-3909839 None:intergenic 55.0%
!!! ATGTGCTTTTCGGGTTGGGC+TGG + chr2_1:3910052-3910071 Msa0188700:CDS 55.0%
CATCTTGTTACTGGGGGAGG+GGG + chr2_1:3910588-3910607 Msa0188700:intron 55.0%
ATAGAGCATGAGGGGAAGCG+TGG + chr2_1:3910697-3910716 Msa0188700:intron 55.0%
GCTGCTGGAAGTTCCCAACA+TGG + chr2_1:3911219-3911238 Msa0188700:CDS 55.0%
CACTGACCTCAAGTAAGCGG+CGG - chr2_1:3911291-3911310 None:intergenic 55.0%
CCTGACAGTTTCAGGAGGAC+CGG - chr2_1:3911329-3911348 None:intergenic 55.0%
CGGTCCTCCTGAAACTGTCA+GGG + chr2_1:3911327-3911346 Msa0188700:CDS 55.0%
CAAGCTGGGATCAGCCAACT+GGG + chr2_1:3911632-3911651 Msa0188700:CDS 55.0%
! ACTCTCAAGGGTGCAGGCTT+TGG + chr2_1:3911678-3911697 Msa0188700:CDS 55.0%
ACAGAAGCAAGGTTAGGCGG+CGG + chr2_1:3911754-3911773 Msa0188700:CDS 55.0%
TGCCTCCAAGGCGAAGAGAT+GGG + chr2_1:3911788-3911807 Msa0188700:CDS 55.0%
!! GGTGGTAGTGGAACGTCTTC+AGG + chr2_1:3911838-3911857 Msa0188700:CDS 55.0%
!! GGTAGTGGAACGTCTTCAGG+TGG + chr2_1:3911841-3911860 Msa0188700:CDS 55.0%
GGCAGTGGACGTACAGGATA+CGG + chr2_1:3911901-3911920 Msa0188700:CDS 55.0%
AGTGGACGTACAGGATACGG+TGG + chr2_1:3911904-3911923 Msa0188700:CDS 55.0%
TTCAGTCAAGCTGGTGGGAG+TGG + chr2_1:3911943-3911962 Msa0188700:CDS 55.0%
! GTGGCGGCTATTCTAGAGGA+CGG + chr2_1:3911962-3911981 Msa0188700:CDS 55.0%
! TGGCGGCTATTCTAGAGGAC+GGG + chr2_1:3911963-3911982 Msa0188700:CDS 55.0%
TCTAGAGGACGGGGAACGAT+TGG + chr2_1:3911973-3911992 Msa0188700:CDS 55.0%
GGAGGCGGCTATCAGAATTC+AGG + chr2_1:3911994-3912013 Msa0188700:CDS 55.0%
GCGGCTATCAGAATTCAGGG+AGG + chr2_1:3911998-3912017 Msa0188700:CDS 55.0%
!! CTACCCGCATGGTTAGCCTT+AGG + chr2_1:3912064-3912083 Msa0188700:CDS 55.0%
!! ACCCGCATGGTTAGCCTTAG+GGG + chr2_1:3912066-3912085 Msa0188700:CDS 55.0%
TCCCCTAAGGCTAACCATGC+GGG - chr2_1:3912070-3912089 None:intergenic 55.0%
CTCCCCTAAGGCTAACCATG+CGG - chr2_1:3912071-3912090 None:intergenic 55.0%
GTCAAGCACGAACTCCCCTA+AGG - chr2_1:3912083-3912102 None:intergenic 55.0%
CAAACATTGGGAGCTGGGAG+AGG - chr2_1:3912234-3912253 None:intergenic 55.0%
GGGAGAGTCCTGAGAGTGAG+GGG + chr2_1:3908857-3908876 Msa0188700:CDS 60.0%
GGAGAGTCCTGAGAGTGAGG+GGG + chr2_1:3908858-3908877 Msa0188700:CDS 60.0%
TCCGGCTTCCTGAGCTGATC+AGG - chr2_1:3908943-3908962 None:intergenic 60.0%
TCAGAATCCGACACGGGCTC+CGG - chr2_1:3908961-3908980 None:intergenic 60.0%
! GACAGGCCTCCTGGTGATGA+TGG + chr2_1:3909000-3909019 Msa0188700:CDS 60.0%
GCATCGCCATCATCACCAGG+AGG - chr2_1:3909009-3909028 None:intergenic 60.0%
!! GGAGCATCGCCATCATCACC+AGG - chr2_1:3909012-3909031 None:intergenic 60.0%
! AGATTCTGGAAGCCAGGGGC+AGG + chr2_1:3909133-3909152 Msa0188700:CDS 60.0%
TTACCCCGGAACTTGTGGCG+CGG + chr2_1:3909787-3909806 Msa0188700:CDS 60.0%
TTTCCGCGCCACAAGTTCCG+GGG - chr2_1:3909793-3909812 None:intergenic 60.0%
GTTTCCGCGCCACAAGTTCC+GGG - chr2_1:3909794-3909813 None:intergenic 60.0%
GGTTTCCGCGCCACAAGTTC+CGG - chr2_1:3909795-3909814 None:intergenic 60.0%
!! GGGCTGGTTTCTGAAGCGCA+TGG + chr2_1:3910068-3910087 Msa0188700:CDS 60.0%
CCGGTCCTCCTGAAACTGTC+AGG + chr2_1:3911326-3911345 Msa0188700:CDS 60.0%
GCAAGCTGGGATCAGCCAAC+TGG + chr2_1:3911631-3911650 Msa0188700:CDS 60.0%
AAGCAAGGTTAGGCGGCGGT+GGG + chr2_1:3911758-3911777 Msa0188700:CDS 60.0%
!! GTGGGTTGGATCTGCCTCCA+AGG + chr2_1:3911776-3911795 Msa0188700:CDS 60.0%
CTGCCTCCAAGGCGAAGAGA+TGG + chr2_1:3911787-3911806 Msa0188700:CDS 60.0%
TGCCCATCTCTTCGCCTTGG+AGG - chr2_1:3911793-3911812 None:intergenic 60.0%
TCCAAGGCGAAGAGATGGGC+AGG + chr2_1:3911792-3911811 Msa0188700:CDS 60.0%
TCCTGCCCATCTCTTCGCCT+TGG - chr2_1:3911796-3911815 None:intergenic 60.0%
GATTATGCCGCTGCAGCTGC+TGG + chr2_1:3911814-3911833 Msa0188700:CDS 60.0%
GTGGAACGTCTTCAGGTGGC+AGG + chr2_1:3911845-3911864 Msa0188700:CDS 60.0%
GAACGTCTTCAGGTGGCAGG+TGG + chr2_1:3911848-3911867 Msa0188700:CDS 60.0%
AGGCAAGGCAGTGGACGTAC+AGG + chr2_1:3911895-3911914 Msa0188700:CDS 60.0%
GGACGTACAGGATACGGTGG+AGG + chr2_1:3911907-3911926 Msa0188700:CDS 60.0%
AGTCAAGCTGGTGGGAGTGG+CGG + chr2_1:3911946-3911965 Msa0188700:CDS 60.0%
GGGAGTGGCGGCTATTCTAG+AGG + chr2_1:3911958-3911977 Msa0188700:CDS 60.0%
! GGCGGCTATTCTAGAGGACG+GGG + chr2_1:3911964-3911983 Msa0188700:CDS 60.0%
AGAGGACGGGGAACGATTGG+AGG + chr2_1:3911976-3911995 Msa0188700:CDS 60.0%
CATTGGGAGCTGGGAGAGGA+GGG - chr2_1:3912230-3912249 None:intergenic 60.0%
ACATTGGGAGCTGGGAGAGG+AGG - chr2_1:3912231-3912250 None:intergenic 60.0%
TCTGGAAGCCAGGGGCAGGA+AGG + chr2_1:3909137-3909156 Msa0188700:CDS 65.0%
CTGGAAGCCAGGGGCAGGAA+GGG + chr2_1:3909138-3909157 Msa0188700:CDS 65.0%
TCCAGTTCCCTTCCTGCCCC+TGG - chr2_1:3909148-3909167 None:intergenic 65.0%
GGGGCAGGAAGGGAACTGGA+AGG + chr2_1:3909148-3909167 Msa0188700:CDS 65.0%
GGCATATGCCCACTGAGGCC+TGG - chr2_1:3909279-3909298 None:intergenic 65.0%
GAAGCAAGGTTAGGCGGCGG+TGG + chr2_1:3911757-3911776 Msa0188700:CDS 65.0%
AAGGTTAGGCGGCGGTGGGT+TGG + chr2_1:3911762-3911781 Msa0188700:CDS 65.0%
TATGCCGCTGCAGCTGCTGG+TGG + chr2_1:3911817-3911836 Msa0188700:CDS 65.0%
ACCACCACCAGCAGCTGCAG+CGG - chr2_1:3911824-3911843 None:intergenic 65.0%
!! GCAGCTGCTGGTGGTGGTAG+TGG + chr2_1:3911826-3911845 Msa0188700:CDS 65.0%
GGACGGGGAACGATTGGAGG+CGG + chr2_1:3911979-3911998 Msa0188700:CDS 65.0%
CAGGAAGCCGGAGCCCGTGT+CGG + chr2_1:3908951-3908970 Msa0188700:CDS 70.0%
GCCAGGGGCAGGAAGGGAAC+TGG + chr2_1:3909144-3909163 Msa0188700:CDS 70.0%
GGCGCGGAAACCCACCTTCC+CGG + chr2_1:3909803-3909822 Msa0188700:CDS 70.0%
GCCGCTGCAGCTGCTGGTGG+TGG + chr2_1:3911820-3911839 Msa0188700:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 3908149 3912398 3908149 ID=Msa0188700;Name=Msa0188700
chr2_1 mRNA 3908149 3912398 3908149 ID=Msa0188700-mRNA-1;Parent=Msa0188700;Name=Msa0188700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=79|1|1|1|1|1|3|297|939
chr2_1 exon 3908149 3908251 3908149 ID=Msa0188700-mRNA-1:exon:1668;Parent=Msa0188700-mRNA-1
chr2_1 exon 3908358 3910184 3908358 ID=Msa0188700-mRNA-1:exon:1669;Parent=Msa0188700-mRNA-1
chr2_1 exon 3911133 3912398 3911133 ID=Msa0188700-mRNA-1:exon:1670;Parent=Msa0188700-mRNA-1
chr2_1 five_prime_UTR 3908149 3908227 3908149 ID=Msa0188700-mRNA-1:five_prime_utr;Parent=Msa0188700-mRNA-1
chr2_1 CDS 3908228 3908251 3908228 ID=Msa0188700-mRNA-1:cds;Parent=Msa0188700-mRNA-1
chr2_1 CDS 3908358 3910184 3908358 ID=Msa0188700-mRNA-1:cds;Parent=Msa0188700-mRNA-1
chr2_1 CDS 3911133 3912101 3911133 ID=Msa0188700-mRNA-1:cds;Parent=Msa0188700-mRNA-1
chr2_1 three_prime_UTR 3912102 3912398 3912102 ID=Msa0188700-mRNA-1:three_prime_utr;Parent=Msa0188700-mRNA-1
Gene Sequence

>Msa0188700

ATGGCTTCGAGATTCTGGACACAGGGTAACAGCGATAGTGACGATGACGAACCCACTGATATTGATGATGAACCTAACGATACTGAACCCGTTGATGATGAACCCAACAACAATACAGCTAATAGATACCTACAAACCAAACCCGTTGTTGATGACAGTGACGACGACGATGATGGCCAAAAGCGTGTTGTTAAATCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTCGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCTAATCTTTACATCAAGGCTCTTGTTATGCTTGAAGATTTCCTTGCTCAGGCTTCTGCTAATAAGGATGCCAAGAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGTAGGGAGAGTCCTGAGAGTGAGGGGGAAAAGGATGACGAGGATGAGGACTCTGACGAATACGAGACCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCCGTGTCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAACTAGATGAGAATGAAACTAAGAAAGGGGATGACTATGACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCGCATGAGGTTTATGAAGCAACGAGAAAATTGGCTGAGATGACCGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTTCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATACAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTCGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCTAAGCGTAAGATCATCAGTAAGAATTTCCGCCGCTTACTTGAGGTCAGTGAGAAACAAACATTCACCGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGAGGTGTGGAAATTTGTGAAAAATCGTGACACCGTGCTAGAAATGCTGAAGGATAAAATCAAGGAGGAGGCGCTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTCAGTTTGGATCAGCTCACAAATTTTTTTGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTATTTTCAGAAATGTTGAACTCTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATCGTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGAAGAGATGGGCAGGATTATGCCGCTGCAGCTGCTGGTGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGTGGACGTACAGGATACGGTGGAGGAAGAGCATTATCGTTCAGTCAAGCTGGTGGGAGTGGCGGCTATTCTAGAGGACGGGGAACGATTGGAGGCGGCTATCAGAATTCAGGGAGGACTCAAGGGGGTTCAACATTGAGGGGAACCCACGTAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA
Protein sequence

>Msa0188700

MASRFWTQGNSDSDDDEPTDIDDEPNDTEPVDDEPNNNTANRYLQTKPVVDDSDDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDDEDEDSDEYETDDEIIEPDQLRKPEPVSDSETSELGNDRPPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYDGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEELKGFEDTRISAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLEVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDSFSLDQLTNFFDLSLPRVHSIVSRMMINEELHASWDQPTGCIIFRNVELSRVQALAFQLTEKLSIVAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTIGGGYQNSGRTQGGSTLRGTHVDTSTRMVSLRGVRA*