AlfalfaGEDB | Msa0194410

M. sativa cultivar zhongmu-4 / Msa0194410

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194410	XP_013462642.1	92.925	212	14	1	1	211	1	212	2.45e-133	383

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194410	A0A072V4C0	92.925	212	14	1	1	211	1	212	1.17e-133	383

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0194410	0.834962	2.212372e-56	-8.615850e-47
Msa0003890	Msa0194410	0.810436	1.153814e-50	-8.615850e-47
Msa0006380	Msa0194410	0.830985	2.156846e-55	-8.615850e-47
Msa0011960	Msa0194410	0.802382	5.759920e-49	-8.615850e-47
Msa0027260	Msa0194410	0.805890	1.072698e-49	-8.615850e-47
Msa0033110	Msa0194410	0.814806	1.277308e-51	-8.615850e-47
Msa0033260	Msa0194410	0.811430	7.027793e-51	-8.615850e-47
Msa0040690	Msa0194410	0.808132	3.599819e-50	-8.615850e-47
Msa0044000	Msa0194410	0.832395	9.686226e-56	-8.615850e-47
Msa0052680	Msa0194410	0.822480	2.315648e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194410	MtrunA17_Chr2g0285101	92.925	212	14	1	1	211	1	212	2.25e-137	383

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194410	AT5G45660.1	35.071	211	122	4	1	196	1	211	2.31e-42	142

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Find 77 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTATATGTTAAGGT+TGG	0.447011	2_1:-10398764	Msa0194410:three_prime_UTR
AAACTCGTTAACATCCGAAA+CGG	0.584093	2_1:+10401318	None:intergenic
AAACTTGTCAATTATGCATA+TGG	0.391638	2_1:+10398699	None:intergenic
AAAGCGATTTAGTAACAGTA+AGG	0.517375	2_1:+10401215	None:intergenic
AACAGTTTGGAGAAGGTCAA+CGG	0.556621	2_1:-10401424	Msa0194410:CDS
AACTATACAAGTTATAGCTC+AGG	0.422659	2_1:+10398939	None:intergenic
AACTTAGTAAGTAAGTGGTT+AGG	0.572959	2_1:+10398867	None:intergenic
AAGAAGAAGATGATGAGGGT+TGG	0.539024	2_1:+10401604	None:intergenic
AAGGTTTCGGAAATGGTAAT+AGG	0.457104	2_1:+10401540	None:intergenic
AATCACTGTTGTCGAGTGTA+AGG	0.463949	2_1:+10401682	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATTAAGAAGAAGATGATG+AGG	+	chr2_1:10398762-10398781	None:intergenic	30.0%
AAAGCGATTTAGTAACAGTA+AGG	+	chr2_1:10399146-10399165	None:intergenic	30.0%
AAGGAACTTTGTAGAATCAA+TGG	-	chr2_1:10399439-10399458	Msa0194410:intron	30.0%
ACTAATCTTACTTCCGTAAT+TGG	+	chr2_1:10399940-10399959	None:intergenic	30.0%
ATTACATATGCTCAAAGAGA+AGG	+	chr2_1:10400108-10400127	None:intergenic	30.0%
TCAAGCTAATGCTTATAGAA+AGG	+	chr2_1:10400167-10400186	None:intergenic	30.0%
CTTTAACATCAACTTTCTCA+TGG	-	chr2_1:10400546-10400565	Msa0194410:intron	30.0%
TCTCTTCTTATAAAAAGGAC+CGG	+	chr2_1:10400675-10400694	None:intergenic	30.0%
GAATTGTAATAGCAAATCCT+TGG	+	chr2_1:10401375-10401394	None:intergenic	30.0%
ACTATACAAGTTATAGCTCA+GGG	+	chr2_1:10401421-10401440	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	10398652	10401728	10398652	ID=Msa0194410;Name=Msa0194410
chr2_1	mRNA	10398652	10401728	10398652	ID=Msa0194410-mRNA-1;Parent=Msa0194410;Name=Msa0194410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=81\|1\|1\|1\|1\|1\|2\|298\|211
chr2_1	exon	10398652	10399120	10398652	ID=Msa0194410-mRNA-1:exon:4721;Parent=Msa0194410-mRNA-1
chr2_1	exon	10401183	10401728	10401183	ID=Msa0194410-mRNA-1:exon:4720;Parent=Msa0194410-mRNA-1
chr2_1	five_prime_UTR	10401648	10401728	10401648	ID=Msa0194410-mRNA-1:five_prime_utr;Parent=Msa0194410-mRNA-1
chr2_1	CDS	10401183	10401647	10401183	ID=Msa0194410-mRNA-1:cds;Parent=Msa0194410-mRNA-1
chr2_1	CDS	10398950	10399120	10398950	ID=Msa0194410-mRNA-1:cds;Parent=Msa0194410-mRNA-1
chr2_1	three_prime_UTR	10398652	10398949	10398652	ID=Msa0194410-mRNA-1:three_prime_utr;Parent=Msa0194410-mRNA-1

Gene Sequence

>Msa0194410

ATGACAACCGTACGATCAAATCCAACCCTCATCATCTTCTTCTTAATTCTCTTCATCACACCCTCCCAATCACTCTCATTCTCCTCCTATTACCATTTCCGAAACCTTCTTTCCCTCTCTCACTCCATTTTCACCGGCGTCGCTAACCTCCGCGCAAAGCGCGGTGACATCGCCAGCGCCGACAGAGCGAAAGCCATAGCAAACAGTTTGGAGAAGGTCAACGGATTTGGATTCGTGAAGCTTGTGTGGTCTGCTTGGTCTTGGAAATGGATGTTGAAGGAGCTTCCGTTGACGGAAATGTACGGCGCCGTTTCGGATGTTAACGAGTTTTTGAGAAGTTTGAATGAGTTGACTCGTTTGGAATCGGCTAGTGAGAGAGCGGTTTGGATCACGAGAAATTACCAGAATCTCCTTACTGTTACTAAATCGCTTTTTAGTAAACTGCTGAAAGCGTTTGGTCAATCGGAAGGTGTGAGGAAAGTAGTGGAGACGTTGCGAATAGAGGTGGTGGAAGGCGGGTTAATCAGAGATTGCCTTTTACTTGGTGGCAATGATTTGAAGGATTTGATTAAAGTTGCCAAGGATTTGCTATTACAATTCTTTCCTGCTGCGACTGATAAAAACCCTGAGCTATAA

Protein sequence

>Msa0194410

MTTVRSNPTLIIFFLILFITPSQSLSFSSYYHFRNLLSLSHSIFTGVANLRAKRGDIASADRAKAIANSLEKVNGFGFVKLVWSAWSWKWMLKELPLTEMYGAVSDVNEFLRSLNELTRLESASERAVWITRNYQNLLTVTKSLFSKLLKAFGQSEGVRKVVETLRIEVVEGGLIRDCLLLGGNDLKDLIKVAKDLLLQFFPAATDKNPEL*