Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194410 | XP_013462642.1 | 92.925 | 212 | 14 | 1 | 1 | 211 | 1 | 212 | 2.45e-133 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194410 | A0A072V4C0 | 92.925 | 212 | 14 | 1 | 1 | 211 | 1 | 212 | 1.17e-133 | 383 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0194410 | 0.834962 | 2.212372e-56 | -8.615850e-47 |
| Msa0003890 | Msa0194410 | 0.810436 | 1.153814e-50 | -8.615850e-47 |
| Msa0006380 | Msa0194410 | 0.830985 | 2.156846e-55 | -8.615850e-47 |
| Msa0011960 | Msa0194410 | 0.802382 | 5.759920e-49 | -8.615850e-47 |
| Msa0027260 | Msa0194410 | 0.805890 | 1.072698e-49 | -8.615850e-47 |
| Msa0033110 | Msa0194410 | 0.814806 | 1.277308e-51 | -8.615850e-47 |
| Msa0033260 | Msa0194410 | 0.811430 | 7.027793e-51 | -8.615850e-47 |
| Msa0040690 | Msa0194410 | 0.808132 | 3.599819e-50 | -8.615850e-47 |
| Msa0044000 | Msa0194410 | 0.832395 | 9.686226e-56 | -8.615850e-47 |
| Msa0052680 | Msa0194410 | 0.822480 | 2.315648e-53 | -8.615850e-47 |
| Msa0059110 | Msa0194410 | 0.807457 | 5.007367e-50 | -8.615850e-47 |
| Msa0079070 | Msa0194410 | 0.801235 | 9.909604e-49 | -8.615850e-47 |
| Msa0084380 | Msa0194410 | 0.818109 | 2.326375e-52 | -8.615850e-47 |
| Msa0090360 | Msa0194410 | 0.834590 | 2.745485e-56 | -8.615850e-47 |
| Msa0090520 | Msa0194410 | 0.801035 | 1.088906e-48 | -8.615850e-47 |
| Msa0090570 | Msa0194410 | 0.833955 | 3.960475e-56 | -8.615850e-47 |
| Msa0091410 | Msa0194410 | 0.811798 | 5.846745e-51 | -8.615850e-47 |
| Msa0100740 | Msa0194410 | 0.836928 | 7.020438e-57 | -8.615850e-47 |
| Msa0127800 | Msa0194410 | 0.841320 | 5.102872e-58 | -8.615850e-47 |
| Msa0128860 | Msa0194410 | 0.811393 | 7.159257e-51 | -8.615850e-47 |
| Msa0137840 | Msa0194410 | 0.815156 | 1.067935e-51 | -8.615850e-47 |
| Msa0137990 | Msa0194410 | 0.801028 | 1.092478e-48 | -8.615850e-47 |
| Msa0140820 | Msa0194410 | 0.815388 | 9.486429e-52 | -8.615850e-47 |
| Msa0145440 | Msa0194410 | 0.809532 | 1.805848e-50 | -8.615850e-47 |
| Msa0160550 | Msa0194410 | 0.807497 | 4.910885e-50 | -8.615850e-47 |
| Msa0171540 | Msa0194410 | 0.805121 | 1.555071e-49 | -8.615850e-47 |
| Msa0174730 | Msa0194410 | 0.812826 | 3.486220e-51 | -8.615850e-47 |
| Msa0183850 | Msa0194410 | 0.821810 | 3.312289e-53 | -8.615850e-47 |
| Msa0184040 | Msa0194410 | 0.827983 | 1.157124e-54 | -8.615850e-47 |
| Msa0188350 | Msa0194410 | 0.808066 | 3.717937e-50 | -8.615850e-47 |
| Msa0189520 | Msa0194410 | 0.802206 | 6.261060e-49 | -8.615850e-47 |
| Msa0194410 | Msa0206690 | 0.802773 | 4.784702e-49 | -8.615850e-47 |
| Msa0194410 | Msa0207670 | 0.803401 | 3.547661e-49 | -8.615850e-47 |
| Msa0194410 | Msa0209350 | 0.810206 | 1.293651e-50 | -8.615850e-47 |
| Msa0194410 | Msa0209500 | 0.817444 | 3.287177e-52 | -8.615850e-47 |
| Msa0194410 | Msa0211150 | 0.824943 | 6.138294e-54 | -8.615850e-47 |
| Msa0194410 | Msa0222620 | 0.804918 | 1.715026e-49 | -8.615850e-47 |
| Msa0194410 | Msa0231980 | 0.843901 | 1.053706e-58 | -8.615850e-47 |
| Msa0194410 | Msa0232050 | 0.843246 | 1.577052e-58 | -8.615850e-47 |
| Msa0194410 | Msa0249580 | 0.809051 | 2.290938e-50 | -8.615850e-47 |
| Msa0194410 | Msa0257460 | 0.807850 | 4.131618e-50 | -8.615850e-47 |
| Msa0194410 | Msa0280090 | 0.800152 | 1.647602e-48 | -8.615850e-47 |
| Msa0194410 | Msa0281530 | 0.804108 | 2.530725e-49 | -8.615850e-47 |
| Msa0194410 | Msa0299870 | 0.800898 | 1.161006e-48 | -8.615850e-47 |
| Msa0194410 | Msa0309750 | 0.800810 | 1.210018e-48 | -8.615850e-47 |
| Msa0194410 | Msa0309770 | 0.809721 | 1.645400e-50 | -8.615850e-47 |
| Msa0194410 | Msa0326480 | 0.834740 | 2.516291e-56 | -8.615850e-47 |
| Msa0194410 | Msa0340380 | 0.817253 | 3.628820e-52 | -8.615850e-47 |
| Msa0194410 | Msa0357900 | 0.816271 | 6.027745e-52 | -8.615850e-47 |
| Msa0194410 | Msa0366890 | 0.800754 | 1.242513e-48 | -8.615850e-47 |
| Msa0194410 | Msa0369450 | 0.800339 | 1.509689e-48 | -8.615850e-47 |
| Msa0194410 | Msa0376300 | 0.816241 | 6.120718e-52 | -8.615850e-47 |
| Msa0194410 | Msa0376310 | 0.831102 | 2.018595e-55 | -8.615850e-47 |
| Msa0194410 | Msa0385580 | 0.805187 | 1.506723e-49 | -8.615850e-47 |
| Msa0194410 | Msa0388700 | 0.802329 | 5.907973e-49 | -8.615850e-47 |
| Msa0194410 | Msa0395820 | 0.817433 | 3.305400e-52 | -8.615850e-47 |
| Msa0194410 | Msa0402790 | 0.833194 | 6.135908e-56 | -8.615850e-47 |
| Msa0194410 | Msa0468330 | 0.804773 | 1.839365e-49 | -8.615850e-47 |
| Msa0194410 | Msa0479270 | 0.801706 | 7.933939e-49 | -8.615850e-47 |
| Msa0194410 | Msa0493410 | 0.803341 | 3.651195e-49 | -8.615850e-47 |
| Msa0194410 | Msa0524500 | 0.815367 | 9.588059e-52 | -8.615850e-47 |
| Msa0194410 | Msa0539530 | -0.808834 | 2.549357e-50 | -8.615850e-47 |
| Msa0194410 | Msa0542290 | 0.808833 | 2.550605e-50 | -8.615850e-47 |
| Msa0194410 | Msa0547160 | 0.816402 | 5.632764e-52 | -8.615850e-47 |
| Msa0194410 | Msa0548240 | 0.818693 | 1.715398e-52 | -8.615850e-47 |
| Msa0194410 | Msa0555450 | 0.815123 | 1.086401e-51 | -8.615850e-47 |
| Msa0194410 | Msa0556060 | 0.812802 | 3.528731e-51 | -8.615850e-47 |
| Msa0194410 | Msa0587910 | 0.804264 | 2.347918e-49 | -8.615850e-47 |
| Msa0194410 | Msa0615710 | 0.829588 | 4.733060e-55 | -8.615850e-47 |
| Msa0194410 | Msa0623790 | 0.803747 | 3.007215e-49 | -8.615850e-47 |
| Msa0194410 | Msa0639310 | 0.807041 | 6.134770e-50 | -8.615850e-47 |
| Msa0194410 | Msa0643560 | 0.802829 | 4.658569e-49 | -8.615850e-47 |
| Msa0194410 | Msa0657580 | 0.813672 | 2.273729e-51 | -8.615850e-47 |
| Msa0194410 | Msa0663390 | 0.809340 | 1.986303e-50 | -8.615850e-47 |
| Msa0194410 | Msa0682680 | 0.817440 | 3.293653e-52 | -8.615850e-47 |
| Msa0194410 | Msa0683170 | 0.801559 | 8.502717e-49 | -8.615850e-47 |
| Msa0194410 | Msa0698540 | 0.819761 | 9.803159e-53 | -8.615850e-47 |
| Msa0194410 | Msa0707250 | 0.824488 | 7.857486e-54 | -8.615850e-47 |
| Msa0194410 | Msa0750170 | 0.826029 | 3.393861e-54 | -8.615850e-47 |
| Msa0194410 | Msa0794730 | 0.804591 | 2.007070e-49 | -8.615850e-47 |
| Msa0194410 | Msa0800370 | 0.806689 | 7.280301e-50 | -8.615850e-47 |
| Msa0194410 | Msa0808080 | 0.834067 | 3.712275e-56 | -8.615850e-47 |
| Msa0194410 | Msa0808270 | 0.830886 | 2.280902e-55 | -8.615850e-47 |
| Msa0194410 | Msa0849030 | 0.840373 | 9.041404e-58 | -8.615850e-47 |
| Msa0194410 | Msa0892120 | 0.804211 | 2.408595e-49 | -8.615850e-47 |
| Msa0194410 | Msa0894950 | 0.816894 | 4.371030e-52 | -8.615850e-47 |
| Msa0194410 | Msa0902760 | 0.800141 | 1.656439e-48 | -8.615850e-47 |
| Msa0194410 | Msa0963270 | 0.820076 | 8.304276e-53 | -8.615850e-47 |
| Msa0194410 | Msa0968590 | 0.804396 | 2.203869e-49 | -8.615850e-47 |
| Msa0194410 | Msa0969810 | 0.827126 | 1.857930e-54 | -8.615850e-47 |
| Msa0194410 | Msa0974070 | 0.809896 | 1.508708e-50 | -8.615850e-47 |
| Msa0194410 | Msa1006840 | 0.806188 | 9.288150e-50 | -8.615850e-47 |
| Msa0194410 | Msa1037420 | 0.832909 | 7.222621e-56 | -8.615850e-47 |
| Msa0194410 | Msa1046060 | 0.804296 | 2.312804e-49 | -8.615850e-47 |
| Msa0194410 | Msa1048160 | 0.822954 | 1.796308e-53 | -8.615850e-47 |
| Msa0194410 | Msa1078170 | 0.823602 | 1.267906e-53 | -8.615850e-47 |
| Msa0194410 | Msa1081930 | 0.840104 | 1.062774e-57 | -8.615850e-47 |
| Msa0194410 | Msa1093530 | 0.800444 | 1.437151e-48 | -8.615850e-47 |
| Msa0194410 | Msa1109680 | 0.826910 | 2.093289e-54 | -8.615850e-47 |
| Msa0194410 | Msa1123380 | 0.804419 | 2.180414e-49 | -8.615850e-47 |
| Msa0194410 | Msa1123810 | 0.802826 | 4.665331e-49 | -8.615850e-47 |
| Msa0194410 | Msa1135470 | 0.812275 | 4.602085e-51 | -8.615850e-47 |
| Msa0194410 | Msa1147970 | 0.811953 | 5.409369e-51 | -8.615850e-47 |
| Msa0194410 | Msa1160590 | 0.806275 | 8.904221e-50 | -8.615850e-47 |
| Msa0194410 | Msa1162780 | 0.806527 | 7.878889e-50 | -8.615850e-47 |
| Msa0194410 | Msa1165940 | 0.805315 | 1.416690e-49 | -8.615850e-47 |
| Msa0194410 | Msa1207270 | 0.812672 | 3.768205e-51 | -8.615850e-47 |
| Msa0194410 | Msa1208880 | 0.801982 | 6.963931e-49 | -8.615850e-47 |
| Msa0194410 | Msa1219010 | 0.805978 | 1.028309e-49 | -8.615850e-47 |
| Msa0194410 | Msa1232740 | 0.800816 | 1.206804e-48 | -8.615850e-47 |
| Msa0194410 | Msa1243740 | -0.825376 | 4.849184e-54 | -8.615850e-47 |
| Msa0194410 | Msa1244600 | 0.815772 | 7.789052e-52 | -8.615850e-47 |
| Msa0194410 | Msa1253020 | 0.817906 | 2.586632e-52 | -8.615850e-47 |
| Msa0194410 | Msa1254730 | 0.852571 | 4.230108e-61 | -8.615850e-47 |
| Msa0194410 | Msa1284550 | 0.817976 | 2.493477e-52 | -8.615850e-47 |
| Msa0194410 | Msa1286800 | 0.807332 | 5.322307e-50 | -8.615850e-47 |
| Msa0194410 | Msa1287190 | 0.823261 | 1.523728e-53 | -8.615850e-47 |
| Msa0194410 | Msa1287220 | 0.808214 | 3.456709e-50 | -8.615850e-47 |
| Msa0194410 | Msa1294820 | 0.819171 | 1.335736e-52 | -8.615850e-47 |
| Msa0194410 | Msa1313320 | 0.804773 | 1.839087e-49 | -8.615850e-47 |
| Msa0194410 | Msa1336560 | 0.815286 | 9.993841e-52 | -8.615850e-47 |
| Msa0194410 | Msa1345100 | 0.806422 | 8.288564e-50 | -8.615850e-47 |
| Msa0194410 | Msa1346370 | 0.803215 | 3.877471e-49 | -8.615850e-47 |
| Msa0194410 | Msa1359040 | 0.801243 | 9.873280e-49 | -8.615850e-47 |
| Msa0194410 | Msa1360140 | 0.813508 | 2.470669e-51 | -8.615850e-47 |
| Msa0194410 | Msa1366970 | 0.801907 | 7.215787e-49 | -8.615850e-47 |
| Msa0194410 | Msa1367590 | 0.827210 | 1.774605e-54 | -8.615850e-47 |
| Msa0194410 | Msa1368120 | 0.802604 | 5.186033e-49 | -8.615850e-47 |
| Msa0194410 | Msa1373100 | 0.820379 | 7.075623e-53 | -8.615850e-47 |
| Msa0194410 | Msa1375560 | 0.814089 | 1.839655e-51 | -8.615850e-47 |
| Msa0194410 | Msa1379760 | 0.804568 | 2.029145e-49 | -8.615850e-47 |
| Msa0194410 | Msa1385770 | 0.821871 | 3.205730e-53 | -8.615850e-47 |
| Msa0194410 | Msa1394500 | 0.829931 | 3.906197e-55 | -8.615850e-47 |
| Msa0194410 | Msa1409240 | 0.818998 | 1.462515e-52 | -8.615850e-47 |
| Msa0194410 | Msa1409880 | 0.803191 | 3.921293e-49 | -8.615850e-47 |
| Msa0194410 | Msa1412530 | 0.817854 | 2.657105e-52 | -8.615850e-47 |
| Msa0194410 | Msa1419870 | 0.805951 | 1.041749e-49 | -8.615850e-47 |
| Msa0194410 | Msa1422950 | 0.820378 | 7.080404e-53 | -8.615850e-47 |
| Msa0194410 | Msa1427230 | 0.809301 | 2.024743e-50 | -8.615850e-47 |
| Msa0194410 | Msa1432420 | 0.802517 | 5.402405e-49 | -8.615850e-47 |
| Msa0194410 | Msa1433390 | 0.833531 | 5.056244e-56 | -8.615850e-47 |
| Msa0194410 | Msa1434140 | 0.816181 | 6.312991e-52 | -8.615850e-47 |
| Msa0194410 | Msa1434420 | -0.804522 | 2.075277e-49 | -8.615850e-47 |
| Msa0194410 | Msa1451160 | 0.828973 | 6.673814e-55 | -8.615850e-47 |
| Msa0194410 | Msa1454570 | 0.810752 | 9.861179e-51 | -8.615850e-47 |
| Msa0194410 | Msa1460830 | 0.806309 | 8.758903e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194410 | MtrunA17_Chr2g0285101 | 92.925 | 212 | 14 | 1 | 1 | 211 | 1 | 212 | 2.25e-137 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194410 | AT5G45660.1 | 35.071 | 211 | 122 | 4 | 1 | 196 | 1 | 211 | 2.31e-42 | 142 |
Find 77 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGGAGAATGAGAGTGAT+TGG | 0.246997 | 2_1:+10401560 | None:intergenic |
| TTGGAGAAGGTCAACGGATT+TGG | 0.269802 | 2_1:-10401418 | Msa0194410:CDS |
| ATATGTTAAGGTTGGTTATA+AGG | 0.283388 | 2_1:-10398756 | Msa0194410:three_prime_UTR |
| GTTAGCGACGCCGGTGAAAA+TGG | 0.296263 | 2_1:+10401501 | None:intergenic |
| TAGTAACAGTAAGGAGATTC+TGG | 0.310344 | 2_1:+10401224 | None:intergenic |
| AATCATTGCCACCAAGTAAA+AGG | 0.314396 | 2_1:+10399030 | None:intergenic |
| TTTGTTTGCGAGTTGGGTTT+TGG | 0.345083 | 2_1:+10401706 | None:intergenic |
| TAAGGCTTTGTTTGCGAGTT+GGG | 0.362984 | 2_1:+10401700 | None:intergenic |
| AGTTGATTCGGGCAGAATCT+TGG | 0.365867 | 2_1:+10398796 | None:intergenic |
| TTTGAATGAGTTGACTCGTT+TGG | 0.368472 | 2_1:-10401287 | Msa0194410:CDS |
| AAACTTGTCAATTATGCATA+TGG | 0.391638 | 2_1:+10398699 | None:intergenic |
| GGCTTTCGCTCTGTCGGCGC+TGG | 0.398575 | 2_1:+10401453 | None:intergenic |
| GGTCTGCTTGGTCTTGGAAA+TGG | 0.400069 | 2_1:-10401378 | Msa0194410:CDS |
| TGGAGTGAGAGAGGGAAAGA+AGG | 0.407874 | 2_1:+10401521 | None:intergenic |
| AGTAAACTGCTGAAAGCGTT+TGG | 0.410881 | 2_1:-10401190 | Msa0194410:CDS |
| TTGTGTGGTCTGCTTGGTCT+TGG | 0.418105 | 2_1:-10401384 | Msa0194410:CDS |
| GGAAATGTACGGCGCCGTTT+CGG | 0.419708 | 2_1:-10401332 | Msa0194410:CDS |
| CGTACGGTTGTCATTAGATC+TGG | 0.421377 | 2_1:+10401634 | None:intergenic |
| AACTATACAAGTTATAGCTC+AGG | 0.422659 | 2_1:+10398939 | None:intergenic |
| GAGAGAGGGAAAGAAGGTTT+CGG | 0.427150 | 2_1:+10401527 | None:intergenic |
| GTTGATTCGGGCAGAATCTT+GGG | 0.433934 | 2_1:+10398797 | None:intergenic |
| GGGAAAGAAGGTTTCGGAAA+TGG | 0.436442 | 2_1:+10401533 | None:intergenic |
| AAAATTGTATATGTTAAGGT+TGG | 0.447011 | 2_1:-10398764 | Msa0194410:three_prime_UTR |
| ACTTGGTGGCAATGATTTGA+AGG | 0.447313 | 2_1:-10399024 | Msa0194410:CDS |
| TGAGTTGACTCGTTTGGAAT+CGG | 0.448864 | 2_1:-10401281 | Msa0194410:CDS |
| AGATTTATCATTCTTCAGCC+TGG | 0.451037 | 2_1:+10398654 | None:intergenic |
| CTTCTCCAAACTGTTTGCTA+TGG | 0.453713 | 2_1:+10401432 | None:intergenic |
| AAGGTTTCGGAAATGGTAAT+AGG | 0.457104 | 2_1:+10401540 | None:intergenic |
| TGCGCGGAGGTTAGCGACGC+CGG | 0.459786 | 2_1:+10401492 | None:intergenic |
| GCTGAAAGCGTTTGGTCAAT+CGG | 0.460724 | 2_1:-10401182 | Msa0194410:intron |
| AATCACTGTTGTCGAGTGTA+AGG | 0.463949 | 2_1:+10401682 | None:intergenic |
| GTTGAAGGAGCTTCCGTTGA+CGG | 0.467725 | 2_1:-10401353 | Msa0194410:CDS |
| GGAGGAGAATGAGAGTGATT+GGG | 0.473245 | 2_1:+10401561 | None:intergenic |
| TGAAGCTTGTGTGGTCTGCT+TGG | 0.482358 | 2_1:-10401390 | Msa0194410:CDS |
| CGGCTAGTGAGAGAGCGGTT+TGG | 0.487307 | 2_1:-10401261 | Msa0194410:CDS |
| AGTGGAGACGTTGCGAATAG+AGG | 0.488728 | 2_1:-10399081 | Msa0194410:CDS |
| GAATTAAGAAGAAGATGATG+AGG | 0.497544 | 2_1:+10401599 | None:intergenic |
| TGCTATGGCTTTCGCTCTGT+CGG | 0.498075 | 2_1:+10401447 | None:intergenic |
| GAAAGCCATAGCAAACAGTT+TGG | 0.498350 | 2_1:-10401437 | Msa0194410:CDS |
| GTAAGGCTTTGTTTGCGAGT+TGG | 0.503266 | 2_1:+10401699 | None:intergenic |
| GGAGAATGAGAGTGATTGGG+AGG | 0.503563 | 2_1:+10401564 | None:intergenic |
| AAAGCGATTTAGTAACAGTA+AGG | 0.517375 | 2_1:+10401215 | None:intergenic |
| GATTTATCATTCTTCAGCCT+GGG | 0.522890 | 2_1:+10398655 | None:intergenic |
| AGATCTGGAGATTCAACGCT+AGG | 0.525946 | 2_1:+10401649 | None:intergenic |
| ATGGTAACTTAGTAAGTAAG+TGG | 0.532079 | 2_1:+10398862 | None:intergenic |
| CGAATAGAGGTGGTGGAAGG+CGG | 0.532368 | 2_1:-10399068 | Msa0194410:CDS |
| CGATGTCACCGCGCTTTGCG+CGG | 0.532888 | 2_1:+10401476 | None:intergenic |
| AAGAAGAAGATGATGAGGGT+TGG | 0.539024 | 2_1:+10401604 | None:intergenic |
| GACGTTGCGAATAGAGGTGG+TGG | 0.542248 | 2_1:-10399075 | Msa0194410:CDS |
| GGAAGGTGTGAGGAAAGTAG+TGG | 0.544292 | 2_1:-10399099 | Msa0194410:CDS |
| GAATTGTAATAGCAAATCCT+TGG | 0.545082 | 2_1:+10398986 | None:intergenic |
| GAATAGAGGTGGTGGAAGGC+GGG | 0.556225 | 2_1:-10399067 | Msa0194410:CDS |
| AACAGTTTGGAGAAGGTCAA+CGG | 0.556621 | 2_1:-10401424 | Msa0194410:CDS |
| AATTAAGAAGAAGATGATGA+GGG | 0.558701 | 2_1:+10401600 | None:intergenic |
| CGGTGAAAATGGAGTGAGAG+AGG | 0.561236 | 2_1:+10401512 | None:intergenic |
| GGATTTGATTAAAGTTGCCA+AGG | 0.561966 | 2_1:-10399003 | Msa0194410:CDS |
| AGTAAGTAAGTGGTTAGGAC+AGG | 0.562403 | 2_1:+10398872 | None:intergenic |
| AACTTAGTAAGTAAGTGGTT+AGG | 0.572959 | 2_1:+10398867 | None:intergenic |
| CTTCCGTTGACGGAAATGTA+CGG | 0.581210 | 2_1:-10401343 | Msa0194410:CDS |
| TTGGATTCGTGAAGCTTGTG+TGG | 0.582405 | 2_1:-10401399 | Msa0194410:CDS |
| AAACTCGTTAACATCCGAAA+CGG | 0.584093 | 2_1:+10401318 | None:intergenic |
| GAGAATGAGAGTGATTGGGA+GGG | 0.584813 | 2_1:+10401565 | None:intergenic |
| GCTAACCTCCGCGCAAAGCG+CGG | 0.590173 | 2_1:-10401484 | Msa0194410:CDS |
| TTTGAGCTATGTTACAATGG+TGG | 0.591491 | 2_1:-10398902 | Msa0194410:three_prime_UTR |
| ACTATACAAGTTATAGCTCA+GGG | 0.593677 | 2_1:+10398940 | None:intergenic |
| GCGCCGTACATTTCCGTCAA+CGG | 0.596902 | 2_1:+10401340 | None:intergenic |
| GTTTCGGAAATGGTAATAGG+AGG | 0.600848 | 2_1:+10401543 | None:intergenic |
| CATAGCAAACAGTTTGGAGA+AGG | 0.603748 | 2_1:-10401431 | Msa0194410:CDS |
| GTCTTGGAAATGGATGTTGA+AGG | 0.605151 | 2_1:-10401368 | Msa0194410:CDS |
| GAGGGTTGGATTTGATCGTA+CGG | 0.606483 | 2_1:+10401618 | None:intergenic |
| TGTCACCGCGCTTTGCGCGG+AGG | 0.608031 | 2_1:+10401479 | None:intergenic |
| TTGCGAATAGAGGTGGTGGA+AGG | 0.618410 | 2_1:-10399071 | Msa0194410:CDS |
| GGTGAAAATGGAGTGAGAGA+GGG | 0.624218 | 2_1:+10401513 | None:intergenic |
| CTGTATCTACAACTTATCCC+AGG | 0.636501 | 2_1:-10398672 | Msa0194410:three_prime_UTR |
| GGAATCGGCTAGTGAGAGAG+CGG | 0.644065 | 2_1:-10401266 | Msa0194410:CDS |
| TGGTTTGACAGGAAGGTGTG+AGG | 0.646169 | 2_1:-10399109 | Msa0194410:intron |
| GGAGACGTTGCGAATAGAGG+TGG | 0.665868 | 2_1:-10399078 | Msa0194410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAATTTTCTTATAAAT+AGG | - | chr2_1:10400908-10400927 | Msa0194410:intron | 10.0% |
| !! | AAAAAAAATTGTATATGTTA+AGG | - | chr2_1:10401590-10401609 | Msa0194410:CDS | 10.0% |
| !!! | AAAATCAATTTTATGTTTGT+AGG | + | chr2_1:10399279-10399298 | None:intergenic | 15.0% |
| !! | AATATAATAATAAGGTAGTA+AGG | - | chr2_1:10399420-10399439 | Msa0194410:intron | 15.0% |
| !!! | AAAAACTTGTTAGTTTAAAT+AGG | + | chr2_1:10400190-10400209 | None:intergenic | 15.0% |
| !!! | CTTTTTAAACGTTAAATTGA+TGG | + | chr2_1:10399355-10399374 | None:intergenic | 20.0% |
| !! | ATAGTTTACATACTAAATTG+AGG | + | chr2_1:10399389-10399408 | None:intergenic | 20.0% |
| !!! | TTTATCTCATTTTCAACAAA+TGG | + | chr2_1:10399608-10399627 | None:intergenic | 20.0% |
| !!! | GACTACTCATTTTATTATAT+AGG | - | chr2_1:10399671-10399690 | Msa0194410:intron | 20.0% |
| !! | CATATGTAATTACACATATA+CGG | - | chr2_1:10400118-10400137 | Msa0194410:intron | 20.0% |
| !!! | GACAGATTTTTATATACTTT+AGG | - | chr2_1:10400424-10400443 | Msa0194410:intron | 20.0% |
| !! | AAAAATACAAACCTTAAATG+AGG | - | chr2_1:10400809-10400828 | Msa0194410:intron | 20.0% |
| !! | AAAATACAAACCTTAAATGA+GGG | - | chr2_1:10400810-10400829 | Msa0194410:intron | 20.0% |
| !!! | TGTGACTTTTTCTTATAAAT+AGG | - | chr2_1:10400872-10400891 | Msa0194410:intron | 20.0% |
| !!! | AATTTTCTTATAAATAGGAC+CGG | - | chr2_1:10400913-10400932 | Msa0194410:intron | 20.0% |
| !!! | TTTTTTTCATACAGTTGATT+CGG | + | chr2_1:10401577-10401596 | None:intergenic | 20.0% |
| !! | AAAATTGTATATGTTAAGGT+TGG | - | chr2_1:10401594-10401613 | Msa0194410:CDS | 20.0% |
| ! | AATTAAGAAGAAGATGATGA+GGG | + | chr2_1:10398761-10398780 | None:intergenic | 25.0% |
| ! | AATTATTTGAGTCCCAAAAT+TGG | - | chr2_1:10399323-10399342 | Msa0194410:intron | 25.0% |
| ! | ATGTATTGTATCAAACAATG+AGG | + | chr2_1:10399563-10399582 | None:intergenic | 25.0% |
| ! | ATAATAAAATGAGTAGTCAG+TGG | + | chr2_1:10399669-10399688 | None:intergenic | 25.0% |
| !! | AAGACTGTTTTATCCAATTA+CGG | - | chr2_1:10399924-10399943 | Msa0194410:intron | 25.0% |
| ! | TGGTTTCTCTTCTTATAAAA+AGG | + | chr2_1:10400680-10400699 | None:intergenic | 25.0% |
| ! | AACAAAACTAATGATTGTCT+TGG | + | chr2_1:10400716-10400735 | None:intergenic | 25.0% |
| ! | TATATATATATTACTCCCTC+CGG | + | chr2_1:10400935-10400954 | None:intergenic | 25.0% |
| ! | ACAAAATAATGAGTTCTTTC+TGG | + | chr2_1:10401034-10401053 | None:intergenic | 25.0% |
| !!! | AAATATGCATGTACTGATTT+TGG | - | chr2_1:10401222-10401241 | Msa0194410:CDS | 25.0% |
| !!! | TAACTTGTATAGTTGCTTTT+TGG | - | chr2_1:10401428-10401447 | Msa0194410:CDS | 25.0% |
| ! | CAAACAAAAAGAACTGAAAA+TGG | + | chr2_1:10401518-10401537 | None:intergenic | 25.0% |
| !!! | TTTTTTCATACAGTTGATTC+GGG | + | chr2_1:10401576-10401595 | None:intergenic | 25.0% |
| !! | ATATGTTAAGGTTGGTTATA+AGG | - | chr2_1:10401602-10401621 | Msa0194410:CDS | 25.0% |
| ! | AAACTTGTCAATTATGCATA+TGG | + | chr2_1:10401662-10401681 | None:intergenic | 25.0% |
| GAATTAAGAAGAAGATGATG+AGG | + | chr2_1:10398762-10398781 | None:intergenic | 30.0% | |
| AAAGCGATTTAGTAACAGTA+AGG | + | chr2_1:10399146-10399165 | None:intergenic | 30.0% | |
| !!! | TTGTGAATTTTTGTTTTGCG+TGG | - | chr2_1:10399243-10399262 | Msa0194410:intron | 30.0% |
| ! | TGATGGTTTAGTCCAATTTT+GGG | + | chr2_1:10399338-10399357 | None:intergenic | 30.0% |
| !! | TTGATGGTTTAGTCCAATTT+TGG | + | chr2_1:10399339-10399358 | None:intergenic | 30.0% |
| AAGGAACTTTGTAGAATCAA+TGG | - | chr2_1:10399439-10399458 | Msa0194410:intron | 30.0% | |
| ! | AAAAAATAGGGAAAAGCATG+TGG | - | chr2_1:10399788-10399807 | Msa0194410:intron | 30.0% |
| ! | TATAGAATCCACTCCATTTT+AGG | + | chr2_1:10399905-10399924 | None:intergenic | 30.0% |
| ACTAATCTTACTTCCGTAAT+TGG | + | chr2_1:10399940-10399959 | None:intergenic | 30.0% | |
| ATTACATATGCTCAAAGAGA+AGG | + | chr2_1:10400108-10400127 | None:intergenic | 30.0% | |
| TCAAGCTAATGCTTATAGAA+AGG | + | chr2_1:10400167-10400186 | None:intergenic | 30.0% | |
| ! | TACTTTAGGAACTAGTTTGA+CGG | - | chr2_1:10400438-10400457 | Msa0194410:intron | 30.0% |
| CTTTAACATCAACTTTCTCA+TGG | - | chr2_1:10400546-10400565 | Msa0194410:intron | 30.0% | |
| ! | TTTTACACTAATACTTCCTC+CGG | - | chr2_1:10400653-10400672 | Msa0194410:intron | 30.0% |
| TCTCTTCTTATAAAAAGGAC+CGG | + | chr2_1:10400675-10400694 | None:intergenic | 30.0% | |
| !!! | GTCTTGGTTTTGATGATTTT+TGG | + | chr2_1:10400700-10400719 | None:intergenic | 30.0% |
| !! | CACTTCACAAAGTTTTATGA+GGG | + | chr2_1:10400768-10400787 | None:intergenic | 30.0% |
| !! | ACACTTCACAAAGTTTTATG+AGG | + | chr2_1:10400769-10400788 | None:intergenic | 30.0% |
| ! | ACTTTTCTAACCCTCATTTA+AGG | + | chr2_1:10400823-10400842 | None:intergenic | 30.0% |
| ! | AGAAAAAGTCACAACTTTTG+AGG | + | chr2_1:10400865-10400884 | None:intergenic | 30.0% |
| !! | ATGCATATTTCTAGTAGCAT+TGG | + | chr2_1:10401212-10401231 | None:intergenic | 30.0% |
| !!! | CATGTACTGATTTTGGAATA+TGG | - | chr2_1:10401229-10401248 | Msa0194410:CDS | 30.0% |
| !!! | ATTTTGGAATATGGTTTGAC+AGG | - | chr2_1:10401238-10401257 | Msa0194410:CDS | 30.0% |
| GAATTGTAATAGCAAATCCT+TGG | + | chr2_1:10401375-10401394 | None:intergenic | 30.0% | |
| ACTATACAAGTTATAGCTCA+GGG | + | chr2_1:10401421-10401440 | None:intergenic | 30.0% | |
| AACTATACAAGTTATAGCTC+AGG | + | chr2_1:10401422-10401441 | None:intergenic | 30.0% | |
| !!! | TTGTATAGTTGCTTTTTGGT+AGG | - | chr2_1:10401432-10401451 | Msa0194410:CDS | 30.0% |
| AACTTAGTAAGTAAGTGGTT+AGG | + | chr2_1:10401494-10401513 | None:intergenic | 30.0% | |
| ATGGTAACTTAGTAAGTAAG+TGG | + | chr2_1:10401499-10401518 | None:intergenic | 30.0% | |
| AAGGTTTCGGAAATGGTAAT+AGG | + | chr2_1:10398821-10398840 | None:intergenic | 35.0% | |
| AAACTCGTTAACATCCGAAA+CGG | + | chr2_1:10399043-10399062 | None:intergenic | 35.0% | |
| !! | TTTGAATGAGTTGACTCGTT+TGG | - | chr2_1:10399071-10399090 | Msa0194410:CDS | 35.0% |
| TAGTAACAGTAAGGAGATTC+TGG | + | chr2_1:10399137-10399156 | None:intergenic | 35.0% | |
| TAGAATCAATGGTGCAATCA+GGG | - | chr2_1:10399450-10399469 | Msa0194410:intron | 35.0% | |
| ACATATAATACACACACGCA+TGG | + | chr2_1:10399752-10399771 | None:intergenic | 35.0% | |
| ATGTTATGCCTCAAAGTGAT+AGG | + | chr2_1:10400083-10400102 | None:intergenic | 35.0% | |
| GTAATTACACATATACGGAC+TGG | - | chr2_1:10400123-10400142 | Msa0194410:intron | 35.0% | |
| AACACTGTTAGTATCACCTA+GGG | + | chr2_1:10400277-10400296 | None:intergenic | 35.0% | |
| TAACACTGTTAGTATCACCT+AGG | + | chr2_1:10400278-10400297 | None:intergenic | 35.0% | |
| TAACAGTGTTAAGAGCGATA+AGG | - | chr2_1:10400287-10400306 | Msa0194410:intron | 35.0% | |
| AGCGATAAGGACTATAGAAT+TGG | - | chr2_1:10400300-10400319 | Msa0194410:intron | 35.0% | |
| GATAAGGACTATAGAATTGG+CGG | - | chr2_1:10400303-10400322 | Msa0194410:intron | 35.0% | |
| ATAAGGACTATAGAATTGGC+GGG | - | chr2_1:10400304-10400323 | Msa0194410:intron | 35.0% | |
| AGACACATAGATATTCCCAA+TGG | - | chr2_1:10400368-10400387 | Msa0194410:intron | 35.0% | |
| TTCCCAATGGACAATAGAAT+TGG | - | chr2_1:10400381-10400400 | Msa0194410:intron | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | - | chr2_1:10400916-10400935 | Msa0194410:intron | 35.0% | |
| TTCTTATAAATAGGACCGGA+GGG | - | chr2_1:10400917-10400936 | Msa0194410:intron | 35.0% | |
| ! | ATCAGAGATTGCCTTTTACT+TGG | - | chr2_1:10401317-10401336 | Msa0194410:CDS | 35.0% |
| AATCATTGCCACCAAGTAAA+AGG | + | chr2_1:10401331-10401350 | None:intergenic | 35.0% | |
| GGATTTGATTAAAGTTGCCA+AGG | - | chr2_1:10401355-10401374 | Msa0194410:CDS | 35.0% | |
| !!! | GGTTTTGAGCTATGTTACAA+TGG | - | chr2_1:10401453-10401472 | Msa0194410:CDS | 35.0% |
| TTTGAGCTATGTTACAATGG+TGG | - | chr2_1:10401456-10401475 | Msa0194410:CDS | 35.0% | |
| GATTTATCATTCTTCAGCCT+GGG | + | chr2_1:10401706-10401725 | None:intergenic | 35.0% | |
| AGATTTATCATTCTTCAGCC+TGG | + | chr2_1:10401707-10401726 | None:intergenic | 35.0% | |
| !! | TTTGTTTGCGAGTTGGGTTT+TGG | + | chr2_1:10398655-10398674 | None:intergenic | 40.0% |
| !! | TAAGGCTTTGTTTGCGAGTT+GGG | + | chr2_1:10398661-10398680 | None:intergenic | 40.0% |
| AATCACTGTTGTCGAGTGTA+AGG | + | chr2_1:10398679-10398698 | None:intergenic | 40.0% | |
| AAGAAGAAGATGATGAGGGT+TGG | + | chr2_1:10398757-10398776 | None:intergenic | 40.0% | |
| GTTTCGGAAATGGTAATAGG+AGG | + | chr2_1:10398818-10398837 | None:intergenic | 40.0% | |
| GAAAGCCATAGCAAACAGTT+TGG | - | chr2_1:10398921-10398940 | Msa0194410:three_prime_UTR | 40.0% | |
| ! | CTTCTCCAAACTGTTTGCTA+TGG | + | chr2_1:10398929-10398948 | None:intergenic | 40.0% |
| CATAGCAAACAGTTTGGAGA+AGG | - | chr2_1:10398927-10398946 | Msa0194410:three_prime_UTR | 40.0% | |
| AACAGTTTGGAGAAGGTCAA+CGG | - | chr2_1:10398934-10398953 | Msa0194410:exon | 40.0% | |
| GTCTTGGAAATGGATGTTGA+AGG | - | chr2_1:10398990-10399009 | Msa0194410:CDS | 40.0% | |
| !! | TGAGTTGACTCGTTTGGAAT+CGG | - | chr2_1:10399077-10399096 | Msa0194410:CDS | 40.0% |
| !! | AGTAAACTGCTGAAAGCGTT+TGG | - | chr2_1:10399168-10399187 | Msa0194410:intron | 40.0% |
| GTAGAATCAATGGTGCAATC+AGG | - | chr2_1:10399449-10399468 | Msa0194410:intron | 40.0% | |
| AGAATCAATGGTGCAATCAG+GGG | - | chr2_1:10399451-10399470 | Msa0194410:intron | 40.0% | |
| ATCCAGACTTTAGGTACATG+TGG | - | chr2_1:10399477-10399496 | Msa0194410:intron | 40.0% | |
| TGTTAGACTCCACTTTCAGT+TGG | - | chr2_1:10400052-10400071 | Msa0194410:intron | 40.0% | |
| ATGCCTCAAAGTGATAGGAT+GGG | + | chr2_1:10400078-10400097 | None:intergenic | 40.0% | |
| TATGCCTCAAAGTGATAGGA+TGG | + | chr2_1:10400079-10400098 | None:intergenic | 40.0% | |
| TGCTTATAGAAAGGCCTACT+AGG | + | chr2_1:10400158-10400177 | None:intergenic | 40.0% | |
| TAAAAAGCCTGCGCTTAAGT+AGG | - | chr2_1:10400210-10400229 | Msa0194410:intron | 40.0% | |
| ! | TAACATCTTTCCAAGTGTCG+TGG | - | chr2_1:10400344-10400363 | Msa0194410:intron | 40.0% |
| CGCCAATTCTATTGTCCATT+GGG | + | chr2_1:10400386-10400405 | None:intergenic | 40.0% | |
| CCAATGGACAATAGAATTGG+CGG | - | chr2_1:10400384-10400403 | Msa0194410:intron | 40.0% | |
| ! | AATAGAATTGGCGGACGTTA+AGG | - | chr2_1:10400393-10400412 | Msa0194410:intron | 40.0% |
| CTTCTTATAAAAAGGACCGG+AGG | + | chr2_1:10400672-10400691 | None:intergenic | 40.0% | |
| TGGAATATGGTTTGACAGGA+AGG | - | chr2_1:10401242-10401261 | Msa0194410:CDS | 40.0% | |
| ! | AGAGATTGCCTTTTACTTGG+TGG | - | chr2_1:10401320-10401339 | Msa0194410:CDS | 40.0% |
| ! | ACTTGGTGGCAATGATTTGA+AGG | - | chr2_1:10401334-10401353 | Msa0194410:CDS | 40.0% |
| AGTAAGTAAGTGGTTAGGAC+AGG | + | chr2_1:10401489-10401508 | None:intergenic | 40.0% | |
| CTGTATCTACAACTTATCCC+AGG | - | chr2_1:10401686-10401705 | Msa0194410:five_prime_UTR | 40.0% | |
| !! | GTAAGGCTTTGTTTGCGAGT+TGG | + | chr2_1:10398662-10398681 | None:intergenic | 45.0% |
| AGATCTGGAGATTCAACGCT+AGG | + | chr2_1:10398712-10398731 | None:intergenic | 45.0% | |
| CGTACGGTTGTCATTAGATC+TGG | + | chr2_1:10398727-10398746 | None:intergenic | 45.0% | |
| GAGGGTTGGATTTGATCGTA+CGG | + | chr2_1:10398743-10398762 | None:intergenic | 45.0% | |
| GAGAATGAGAGTGATTGGGA+GGG | + | chr2_1:10398796-10398815 | None:intergenic | 45.0% | |
| GGAGGAGAATGAGAGTGATT+GGG | + | chr2_1:10398800-10398819 | None:intergenic | 45.0% | |
| AGGAGGAGAATGAGAGTGAT+TGG | + | chr2_1:10398801-10398820 | None:intergenic | 45.0% | |
| GGGAAAGAAGGTTTCGGAAA+TGG | + | chr2_1:10398828-10398847 | None:intergenic | 45.0% | |
| GAGAGAGGGAAAGAAGGTTT+CGG | + | chr2_1:10398834-10398853 | None:intergenic | 45.0% | |
| GGTGAAAATGGAGTGAGAGA+GGG | + | chr2_1:10398848-10398867 | None:intergenic | 45.0% | |
| ! | CTCTCTCACTCCATTTTCAC+CGG | - | chr2_1:10398847-10398866 | Msa0194410:three_prime_UTR | 45.0% |
| ! | TTGGAGAAGGTCAACGGATT+TGG | - | chr2_1:10398940-10398959 | Msa0194410:exon | 45.0% |
| TTGGATTCGTGAAGCTTGTG+TGG | - | chr2_1:10398959-10398978 | Msa0194410:CDS | 45.0% | |
| CTTCCGTTGACGGAAATGTA+CGG | - | chr2_1:10399015-10399034 | Msa0194410:CDS | 45.0% | |
| !! | GCTGAAAGCGTTTGGTCAAT+CGG | - | chr2_1:10399176-10399195 | Msa0194410:intron | 45.0% |
| CTCCACATGTACCTAAAGTC+TGG | + | chr2_1:10399482-10399501 | None:intergenic | 45.0% | |
| GATGCATGTTGGAGCTATGT+GGG | + | chr2_1:10399823-10399842 | None:intergenic | 45.0% | |
| TATCCAGACAATTGCACCCA+GGG | + | chr2_1:10399849-10399868 | None:intergenic | 45.0% | |
| ATATCCAGACAATTGCACCC+AGG | + | chr2_1:10399850-10399869 | None:intergenic | 45.0% | |
| GTATACGTGCTTCATAGCCT+AGG | - | chr2_1:10399873-10399892 | Msa0194410:intron | 45.0% | |
| !! | TCCATTTTAGGTCCCTTCCT+AGG | + | chr2_1:10399893-10399912 | None:intergenic | 45.0% |
| TCGAATGAGTGCAATGCAGA+AGG | - | chr2_1:10399980-10399999 | Msa0194410:intron | 45.0% | |
| CTGTTAGTATCACCTAGGGT+GGG | + | chr2_1:10400273-10400292 | None:intergenic | 45.0% | |
| ACTGTTAGTATCACCTAGGG+TGG | + | chr2_1:10400274-10400293 | None:intergenic | 45.0% | |
| TATGTGTCTACCACGACACT+TGG | + | chr2_1:10400357-10400376 | None:intergenic | 45.0% | |
| CCGCCAATTCTATTGTCCAT+TGG | + | chr2_1:10400387-10400406 | None:intergenic | 45.0% | |
| !! | GTTGATTCGGGCAGAATCTT+GGG | + | chr2_1:10401564-10401583 | None:intergenic | 45.0% |
| !! | AGTTGATTCGGGCAGAATCT+TGG | + | chr2_1:10401565-10401584 | None:intergenic | 45.0% |
| !! | TATGAATAAATATAATAATA+AGG | - | chr2_1:10399412-10399431 | Msa0194410:intron | 5.0% |
| !! | TTATCTATTAAAAAAAAAAT+AGG | - | chr2_1:10399775-10399794 | Msa0194410:intron | 5.0% |
| !! | TATCTATTAAAAAAAAAATA+GGG | - | chr2_1:10399776-10399795 | Msa0194410:intron | 5.0% |
| !!! | AAAATTTTCAAAAAAATATT+TGG | + | chr2_1:10400899-10400918 | None:intergenic | 5.0% |
| GGAGAATGAGAGTGATTGGG+AGG | + | chr2_1:10398797-10398816 | None:intergenic | 50.0% | |
| TGGAGTGAGAGAGGGAAAGA+AGG | + | chr2_1:10398840-10398859 | None:intergenic | 50.0% | |
| CGGTGAAAATGGAGTGAGAG+AGG | + | chr2_1:10398849-10398868 | None:intergenic | 50.0% | |
| TGCTATGGCTTTCGCTCTGT+CGG | + | chr2_1:10398914-10398933 | None:intergenic | 50.0% | |
| TGAAGCTTGTGTGGTCTGCT+TGG | - | chr2_1:10398968-10398987 | Msa0194410:CDS | 50.0% | |
| TTGTGTGGTCTGCTTGGTCT+TGG | - | chr2_1:10398974-10398993 | Msa0194410:CDS | 50.0% | |
| !! | GGTCTGCTTGGTCTTGGAAA+TGG | - | chr2_1:10398980-10398999 | Msa0194410:CDS | 50.0% |
| GTTGAAGGAGCTTCCGTTGA+CGG | - | chr2_1:10399005-10399024 | Msa0194410:CDS | 50.0% | |
| ATCAATGGTGCAATCAGGGG+CGG | - | chr2_1:10399454-10399473 | Msa0194410:intron | 50.0% | |
| GGATGCATGTTGGAGCTATG+TGG | + | chr2_1:10399824-10399843 | None:intergenic | 50.0% | |
| ATCCAGACAATTGCACCCAG+GGG | + | chr2_1:10399848-10399867 | None:intergenic | 50.0% | |
| ACGTGCTTCATAGCCTAGGA+AGG | - | chr2_1:10399877-10399896 | Msa0194410:intron | 50.0% | |
| CGTGCTTCATAGCCTAGGAA+GGG | - | chr2_1:10399878-10399897 | Msa0194410:intron | 50.0% | |
| GCCTAGGAAGGGACCTAAAA+TGG | - | chr2_1:10399889-10399908 | Msa0194410:intron | 50.0% | |
| GGAAGGGACCTAAAATGGAG+TGG | - | chr2_1:10399894-10399913 | Msa0194410:intron | 50.0% | |
| TAGGATGGGCCAACTGAAAG+TGG | + | chr2_1:10400064-10400083 | None:intergenic | 50.0% | |
| TGGCCCATCCTATCACTTTG+AGG | - | chr2_1:10400072-10400091 | Msa0194410:intron | 50.0% | |
| !! | TACACATATACGGACTGGCC+TGG | - | chr2_1:10400128-10400147 | Msa0194410:intron | 50.0% |
| AAAGGCCTACTAGGACTACC+AGG | + | chr2_1:10400149-10400168 | None:intergenic | 50.0% | |
| GTATCACCTAGGGTGGGAAT+AGG | + | chr2_1:10400267-10400286 | None:intergenic | 50.0% | |
| ! | TGGTTTGACAGGAAGGTGTG+AGG | - | chr2_1:10401249-10401268 | Msa0194410:CDS | 50.0% |
| ! | GGAAGGTGTGAGGAAAGTAG+TGG | - | chr2_1:10401259-10401278 | Msa0194410:CDS | 50.0% |
| AGTGGAGACGTTGCGAATAG+AGG | - | chr2_1:10401277-10401296 | Msa0194410:CDS | 50.0% | |
| !! | TTGCGAATAGAGGTGGTGGA+AGG | - | chr2_1:10401287-10401306 | Msa0194410:CDS | 50.0% |
| ! | GGGTTTTTATCAGTCGCAGC+AGG | + | chr2_1:10401401-10401420 | None:intergenic | 50.0% |
| GTTAGCGACGCCGGTGAAAA+TGG | + | chr2_1:10398860-10398879 | None:intergenic | 55.0% | |
| GCGCCGTACATTTCCGTCAA+CGG | + | chr2_1:10399021-10399040 | None:intergenic | 55.0% | |
| GGAAATGTACGGCGCCGTTT+CGG | - | chr2_1:10399026-10399045 | Msa0194410:CDS | 55.0% | |
| GGAATCGGCTAGTGAGAGAG+CGG | - | chr2_1:10399092-10399111 | Msa0194410:CDS | 55.0% | |
| ! | ACTGGCCTGGTAGTCCTAGT+AGG | - | chr2_1:10400141-10400160 | Msa0194410:intron | 55.0% |
| AAGCCTGCGCTTAAGTAGGC+TGG | - | chr2_1:10400214-10400233 | Msa0194410:intron | 55.0% | |
| AGCCTGCGCTTAAGTAGGCT+GGG | - | chr2_1:10400215-10400234 | Msa0194410:intron | 55.0% | |
| GCTTAAGTAGGCTGGGCCAT+AGG | - | chr2_1:10400222-10400241 | Msa0194410:intron | 55.0% | |
| GGAGACGTTGCGAATAGAGG+TGG | - | chr2_1:10401280-10401299 | Msa0194410:CDS | 55.0% | |
| GACGTTGCGAATAGAGGTGG+TGG | - | chr2_1:10401283-10401302 | Msa0194410:CDS | 55.0% | |
| !! | CGAATAGAGGTGGTGGAAGG+CGG | - | chr2_1:10401290-10401309 | Msa0194410:CDS | 55.0% |
| !! | GAATAGAGGTGGTGGAAGGC+GGG | - | chr2_1:10401291-10401310 | Msa0194410:CDS | 55.0% |
| CGGCTAGTGAGAGAGCGGTT+TGG | - | chr2_1:10399097-10399116 | Msa0194410:CDS | 60.0% | |
| CAGGGGCGGATCCAGACTTT+AGG | - | chr2_1:10399468-10399487 | Msa0194410:intron | 60.0% | |
| TCCAACATGCATCCGCCCCT+GGG | - | chr2_1:10399830-10399849 | Msa0194410:intron | 60.0% | |
| CAGACAATTGCACCCAGGGG+CGG | + | chr2_1:10399845-10399864 | None:intergenic | 60.0% | |
| ACCTAGGGTGGGAATAGGCC+AGG | + | chr2_1:10400262-10400281 | None:intergenic | 60.0% | |
| GCTAACCTCCGCGCAAAGCG+CGG | - | chr2_1:10398874-10398893 | Msa0194410:three_prime_UTR | 65.0% | |
| CGATGTCACCGCGCTTTGCG+CGG | + | chr2_1:10398885-10398904 | None:intergenic | 65.0% | |
| CTCCAACATGCATCCGCCCC+TGG | - | chr2_1:10399829-10399848 | Msa0194410:intron | 65.0% | |
| ACCCAGGGGCGGATGCATGT+TGG | + | chr2_1:10399834-10399853 | None:intergenic | 65.0% | |
| CGCCCCTGGGTGCAATTGTC+TGG | - | chr2_1:10399843-10399862 | Msa0194410:intron | 65.0% | |
| GGCCCAGCCTACTTAAGCGC+AGG | + | chr2_1:10400220-10400239 | None:intergenic | 65.0% | |
| GCCTGGCCTATTCCCACCCT+AGG | - | chr2_1:10400258-10400277 | Msa0194410:intron | 65.0% | |
| TGCGCGGAGGTTAGCGACGC+CGG | + | chr2_1:10398869-10398888 | None:intergenic | 70.0% | |
| TGTCACCGCGCTTTGCGCGG+AGG | + | chr2_1:10398882-10398901 | None:intergenic | 70.0% | |
| GGCTTTCGCTCTGTCGGCGC+TGG | + | chr2_1:10398908-10398927 | None:intergenic | 70.0% | |
| GCTGGGCCATAGGCCCCTAG+CGG | - | chr2_1:10400232-10400251 | Msa0194410:intron | 70.0% | |
| CTGGGCCATAGGCCCCTAGC+GGG | - | chr2_1:10400233-10400252 | Msa0194410:intron | 70.0% | |
| ATAGGCCAGGCCGCCCGCTA+GGG | + | chr2_1:10400249-10400268 | None:intergenic | 70.0% | |
| AATAGGCCAGGCCGCCCGCT+AGG | + | chr2_1:10400250-10400269 | None:intergenic | 70.0% | |
| GGCCATAGGCCCCTAGCGGG+CGG | - | chr2_1:10400236-10400255 | Msa0194410:intron | 75.0% | |
| TAGGCCAGGCCGCCCGCTAG+GGG | + | chr2_1:10400248-10400267 | None:intergenic | 75.0% | |
| ! | GGCCGCCCGCTAGGGGCCTA+TGG | + | chr2_1:10400241-10400260 | None:intergenic | 80.0% |
| !! | TAGGCCCCTAGCGGGCGGCC+TGG | - | chr2_1:10400241-10400260 | Msa0194410:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 10398652 | 10401728 | 10398652 | ID=Msa0194410;Name=Msa0194410 |
| chr2_1 | mRNA | 10398652 | 10401728 | 10398652 | ID=Msa0194410-mRNA-1;Parent=Msa0194410;Name=Msa0194410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=81|1|1|1|1|1|2|298|211 |
| chr2_1 | exon | 10398652 | 10399120 | 10398652 | ID=Msa0194410-mRNA-1:exon:4721;Parent=Msa0194410-mRNA-1 |
| chr2_1 | exon | 10401183 | 10401728 | 10401183 | ID=Msa0194410-mRNA-1:exon:4720;Parent=Msa0194410-mRNA-1 |
| chr2_1 | five_prime_UTR | 10401648 | 10401728 | 10401648 | ID=Msa0194410-mRNA-1:five_prime_utr;Parent=Msa0194410-mRNA-1 |
| chr2_1 | CDS | 10401183 | 10401647 | 10401183 | ID=Msa0194410-mRNA-1:cds;Parent=Msa0194410-mRNA-1 |
| chr2_1 | CDS | 10398950 | 10399120 | 10398950 | ID=Msa0194410-mRNA-1:cds;Parent=Msa0194410-mRNA-1 |
| chr2_1 | three_prime_UTR | 10398652 | 10398949 | 10398652 | ID=Msa0194410-mRNA-1:three_prime_utr;Parent=Msa0194410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
