Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544180 | XP_003630714.1 | 91.818 | 110 | 9 | 0 | 9 | 118 | 73 | 182 | 1.26e-66 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544180 | sp|Q9NV31|IMP3_HUMAN | 64.646 | 99 | 35 | 0 | 18 | 116 | 84 | 182 | 2.90e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544180 | B7FMK3 | 91.818 | 110 | 9 | 0 | 9 | 118 | 73 | 182 | 6.03e-67 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033110 | Msa0544180 | 0.801408 | 9.134403e-49 | -8.615850e-47 |
| Msa0055180 | Msa0544180 | 0.801406 | 9.139838e-49 | -8.615850e-47 |
| Msa0091410 | Msa0544180 | 0.803941 | 2.741152e-49 | -8.615850e-47 |
| Msa0137990 | Msa0544180 | 0.802395 | 5.726595e-49 | -8.615850e-47 |
| Msa0140820 | Msa0544180 | 0.808068 | 3.713653e-50 | -8.615850e-47 |
| Msa0150300 | Msa0544180 | 0.814893 | 1.221385e-51 | -8.615850e-47 |
| Msa0222620 | Msa0544180 | 0.806411 | 8.332629e-50 | -8.615850e-47 |
| Msa0366890 | Msa0544180 | 0.805394 | 1.363699e-49 | -8.615850e-47 |
| Msa0376310 | Msa0544180 | 0.802665 | 5.037424e-49 | -8.615850e-47 |
| Msa0385580 | Msa0544180 | 0.825152 | 5.478720e-54 | -8.615850e-47 |
| Msa0388700 | Msa0544180 | 0.800357 | 1.497070e-48 | -8.615850e-47 |
| Msa0264150 | Msa0544180 | 0.821129 | 4.757185e-53 | -8.615850e-47 |
| Msa0299870 | Msa0544180 | 0.804127 | 2.507314e-49 | -8.615850e-47 |
| Msa0326480 | Msa0544180 | 0.805046 | 1.612859e-49 | -8.615850e-47 |
| Msa0544180 | Msa0548240 | 0.824375 | 8.350014e-54 | -8.615850e-47 |
| Msa0544180 | Msa0577500 | 0.804691 | 1.913210e-49 | -8.615850e-47 |
| Msa0544180 | Msa0607050 | 0.808583 | 2.884684e-50 | -8.615850e-47 |
| Msa0544180 | Msa0608500 | 0.804135 | 2.498573e-49 | -8.615850e-47 |
| Msa0544180 | Msa0647500 | 0.815320 | 9.821628e-52 | -8.615850e-47 |
| Msa0544180 | Msa0649490 | 0.821821 | 3.293846e-53 | -8.615850e-47 |
| Msa0544180 | Msa0662500 | 0.810145 | 1.333231e-50 | -8.615850e-47 |
| Msa0544180 | Msa0663390 | 0.800611 | 1.329128e-48 | -8.615850e-47 |
| Msa0544180 | Msa0690150 | 0.806382 | 8.452718e-50 | -8.615850e-47 |
| Msa0544180 | Msa0698800 | 0.803882 | 2.819993e-49 | -8.615850e-47 |
| Msa0544180 | Msa0709400 | 0.815142 | 1.075776e-51 | -8.615850e-47 |
| Msa0544180 | Msa0709500 | 0.801239 | 9.891861e-49 | -8.615850e-47 |
| Msa0544180 | Msa0788850 | 0.826687 | 2.365652e-54 | -8.615850e-47 |
| Msa0544180 | Msa0794670 | 0.810246 | 1.268043e-50 | -8.615850e-47 |
| Msa0544180 | Msa0808270 | 0.814484 | 1.504763e-51 | -8.615850e-47 |
| Msa0544180 | Msa0902760 | 0.806768 | 7.005734e-50 | -8.615850e-47 |
| Msa0544180 | Msa0968590 | 0.817001 | 4.135857e-52 | -8.615850e-47 |
| Msa0544180 | Msa0974070 | 0.807537 | 4.816455e-50 | -8.615850e-47 |
| Msa0544180 | Msa1006840 | 0.816441 | 5.522236e-52 | -8.615850e-47 |
| Msa0544180 | Msa1013400 | 0.822200 | 2.690026e-53 | -8.615850e-47 |
| Msa0544180 | Msa1051880 | 0.824633 | 7.263356e-54 | -8.615850e-47 |
| Msa0544180 | Msa1063510 | 0.801831 | 7.478910e-49 | -8.615850e-47 |
| Msa0544180 | Msa1078170 | 0.806432 | 8.248805e-50 | -8.615850e-47 |
| Msa0544180 | Msa1081930 | 0.803410 | 3.532724e-49 | -8.615850e-47 |
| Msa0544180 | Msa1093530 | 0.807580 | 4.714722e-50 | -8.615850e-47 |
| Msa0544180 | Msa1104140 | 0.800703 | 1.272888e-48 | -8.615850e-47 |
| Msa0544180 | Msa1109680 | 0.800232 | 1.587458e-48 | -8.615850e-47 |
| Msa0544180 | Msa1121440 | 0.803457 | 3.454451e-49 | -8.615850e-47 |
| Msa0544180 | Msa1123380 | 0.816606 | 5.070650e-52 | -8.615850e-47 |
| Msa0544180 | Msa1124960 | 0.802174 | 6.357377e-49 | -8.615850e-47 |
| Msa0544180 | Msa1160590 | 0.817376 | 3.404952e-52 | -8.615850e-47 |
| Msa0544180 | Msa1171360 | 0.802036 | 6.789001e-49 | -8.615850e-47 |
| Msa0544180 | Msa1207270 | 0.808614 | 2.840523e-50 | -8.615850e-47 |
| Msa0544180 | Msa1218600 | 0.812296 | 4.554275e-51 | -8.615850e-47 |
| Msa0544180 | Msa1237940 | 0.800657 | 1.300624e-48 | -8.615850e-47 |
| Msa0544180 | Msa1244600 | 0.827110 | 1.874642e-54 | -8.615850e-47 |
| Msa0544180 | Msa1253020 | 0.818230 | 2.184372e-52 | -8.615850e-47 |
| Msa0544180 | Msa1254730 | 0.817365 | 3.424175e-52 | -8.615850e-47 |
| Msa0544180 | Msa1294120 | 0.806422 | 8.290691e-50 | -8.615850e-47 |
| Msa0544180 | Msa1294820 | 0.804189 | 2.433960e-49 | -8.615850e-47 |
| Msa0544180 | Msa1305660 | 0.800989 | 1.112601e-48 | -8.615850e-47 |
| Msa0544180 | Msa1306840 | 0.805278 | 1.442128e-49 | -8.615850e-47 |
| Msa0544180 | Msa1353980 | 0.812403 | 4.315304e-51 | -8.615850e-47 |
| Msa0544180 | Msa1374120 | 0.808375 | 3.194538e-50 | -8.615850e-47 |
| Msa0544180 | Msa1377500 | 0.802717 | 4.914589e-49 | -8.615850e-47 |
| Msa0544180 | Msa1382620 | 0.809348 | 1.977747e-50 | -8.615850e-47 |
| Msa0544180 | Msa1386780 | 0.805927 | 1.053753e-49 | -8.615850e-47 |
| Msa0544180 | Msa1391410 | 0.809270 | 2.055601e-50 | -8.615850e-47 |
| Msa0544180 | Msa1419870 | 0.801716 | 7.895650e-49 | -8.615850e-47 |
| Msa0544180 | Msa1451160 | 0.819201 | 1.315318e-52 | -8.615850e-47 |
| Msa0544180 | Msa1451560 | 0.817409 | 3.347940e-52 | -8.615850e-47 |
| Msa0544180 | Msa1457920 | 0.822572 | 2.204513e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544180 | MtrunA17_Chr8g0389901 | 91.818 | 110 | 9 | 0 | 9 | 118 | 73 | 182 | 1.16e-70 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544180 | AT5G15750.1 | 81.651 | 109 | 20 | 0 | 9 | 117 | 73 | 181 | 2.27e-62 | 188 |
Find 25 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGTCTGTAATTGTATT+TGG | 0.229997 | 4_1:-32342403 | None:intergenic |
| CTCAATGAATTTCTCAATGA+AGG | 0.347644 | 4_1:+32340490 | None:intergenic |
| AGCTGTAACTTATATTGAAC+AGG | 0.366283 | 4_1:+32342363 | Msa0544180:CDS |
| AAGCACCTTTCTCTTTATCT+TGG | 0.381545 | 4_1:-32342476 | None:intergenic |
| ACGTAGGCTCTCAACTGTTT+TGG | 0.388493 | 4_1:+32342309 | Msa0544180:CDS |
| TTTAATGACAGTTACAATAT+GGG | 0.424343 | 4_1:+32341449 | Msa0544180:intron |
| CTTCCATGTTTCTAGTTACA+AGG | 0.426456 | 4_1:-32342429 | None:intergenic |
| TTTCTAGTTACAAGGTAAGC+TGG | 0.444914 | 4_1:-32342421 | None:intergenic |
| ACATAGTGTGATGCTTTGCC+TGG | 0.454332 | 4_1:-32341483 | None:intergenic |
| TAACCGTGTCAGCCTTCTGC+AGG | 0.495522 | 4_1:+32341513 | Msa0544180:CDS |
| TTCTAGTTACAAGGTAAGCT+GGG | 0.525625 | 4_1:-32342420 | None:intergenic |
| AGTGTGATGCTTTGCCTGGT+TGG | 0.526362 | 4_1:-32341479 | None:intergenic |
| TCAATGAATTTCTCAATGAA+GGG | 0.529253 | 4_1:+32340491 | None:intergenic |
| ACATGGAAGACATGATTACA+TGG | 0.553951 | 4_1:+32342443 | Msa0544180:CDS |
| TTCTTCCAAGATAAAGAGAA+AGG | 0.564085 | 4_1:+32342471 | Msa0544180:CDS |
| TTACCTGCAGAAGGCTGACA+CGG | 0.596614 | 4_1:-32341516 | None:intergenic |
| GAACAGGGACATGTTCGAGT+TGG | 0.599994 | 4_1:+32342379 | Msa0544180:CDS |
| GCTTCAGTACAATGACAAGT+TGG | 0.608210 | 4_1:+32342495 | Msa0544180:CDS |
| GGAAGACATGATTACATGGG+TGG | 0.620356 | 4_1:+32342447 | Msa0544180:CDS |
| TGACCATGTTGATATTCTCG+AGG | 0.633397 | 4_1:+32340522 | Msa0544180:CDS |
| TTACCTTGTAACTAGAAACA+TGG | 0.656200 | 4_1:+32342426 | Msa0544180:CDS |
| ATATGGGTGTGATTCCAACC+AGG | 0.661105 | 4_1:+32341465 | Msa0544180:CDS |
| CATGGAAGACATGATTACAT+GGG | 0.691863 | 4_1:+32342444 | Msa0544180:CDS |
| AAACCTCGAGAATATCAACA+TGG | 0.712415 | 4_1:-32340525 | None:intergenic |
| GCTGTAACTTATATTGAACA+GGG | 0.722848 | 4_1:+32342364 | Msa0544180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATATGAAAAAAAATA+AGG | + | chr4_1:32341607-32341626 | Msa0544180:intron | 10.0% |
| !! | TTTCATATGAAAAAAAATAA+GGG | + | chr4_1:32341608-32341627 | Msa0544180:intron | 10.0% |
| !! | ACTAAATTTAATAGAAAAAT+AGG | + | chr4_1:32341996-32342015 | Msa0544180:intron | 10.0% |
| !!! | TTTTCATATGAAAAAAAATA+AGG | + | chr4_1:32341607-32341626 | Msa0544180:intron | 10.0% |
| !! | TTTCATATGAAAAAAAATAA+GGG | + | chr4_1:32341608-32341627 | Msa0544180:intron | 10.0% |
| !! | ACTAAATTTAATAGAAAAAT+AGG | + | chr4_1:32341996-32342015 | Msa0544180:intron | 10.0% |
| !! | TAAGTTATATAACAAAACTA+TGG | - | chr4_1:32341244-32341263 | None:intergenic | 15.0% |
| !! | TTTATTACATTCACATAAAA+TGG | - | chr4_1:32341977-32341996 | None:intergenic | 15.0% |
| !! | TAAGTTATATAACAAAACTA+TGG | - | chr4_1:32341244-32341263 | None:intergenic | 15.0% |
| !! | TTTATTACATTCACATAAAA+TGG | - | chr4_1:32341977-32341996 | None:intergenic | 15.0% |
| !! | TAAATTATATACAAGTTGCA+GGG | + | chr4_1:32341107-32341126 | Msa0544180:intron | 20.0% |
| !!! | TATTTTCATCACATTTCATT+TGG | - | chr4_1:32341177-32341196 | None:intergenic | 20.0% |
| !! | AAATGAAATGTGATGAAAAT+AGG | + | chr4_1:32341176-32341195 | Msa0544180:intron | 20.0% |
| !! | GTAACTGTCATTAAAAAAAA+AGG | - | chr4_1:32341444-32341463 | None:intergenic | 20.0% |
| !!! | TTTTAATGACAGTTACAATA+TGG | + | chr4_1:32341448-32341467 | Msa0544180:intron | 20.0% |
| !! | TTTAATGACAGTTACAATAT+GGG | + | chr4_1:32341449-32341468 | Msa0544180:intron | 20.0% |
| !! | AGTTAATAAAGTTGAAACAT+TGG | + | chr4_1:32342159-32342178 | Msa0544180:intron | 20.0% |
| !! | TAAATTATATACAAGTTGCA+GGG | + | chr4_1:32341107-32341126 | Msa0544180:intron | 20.0% |
| !!! | TATTTTCATCACATTTCATT+TGG | - | chr4_1:32341177-32341196 | None:intergenic | 20.0% |
| !! | AAATGAAATGTGATGAAAAT+AGG | + | chr4_1:32341176-32341195 | Msa0544180:intron | 20.0% |
| !! | GTAACTGTCATTAAAAAAAA+AGG | - | chr4_1:32341444-32341463 | None:intergenic | 20.0% |
| !!! | TTTTAATGACAGTTACAATA+TGG | + | chr4_1:32341448-32341467 | Msa0544180:intron | 20.0% |
| !! | TTTAATGACAGTTACAATAT+GGG | + | chr4_1:32341449-32341468 | Msa0544180:intron | 20.0% |
| !! | AGTTAATAAAGTTGAAACAT+TGG | + | chr4_1:32342159-32342178 | Msa0544180:intron | 20.0% |
| ! | GAGTATCTACAAAAACTTAA+GGG | - | chr4_1:32340684-32340703 | None:intergenic | 25.0% |
| ! | TGAGTATCTACAAAAACTTA+AGG | - | chr4_1:32340685-32340704 | None:intergenic | 25.0% |
| !!! | CTTTTCTAAAATCACAGTAT+AGG | - | chr4_1:32340736-32340755 | None:intergenic | 25.0% |
| !!! | TACTGTGATTTTAGAAAAGT+AGG | + | chr4_1:32340737-32340756 | Msa0544180:intron | 25.0% |
| ! | GTAAATTATATACAAGTTGC+AGG | + | chr4_1:32341106-32341125 | Msa0544180:intron | 25.0% |
| ! | ATGACATAAATAGTGAATAC+AGG | + | chr4_1:32341148-32341167 | Msa0544180:intron | 25.0% |
| ! | TATAACTTACAAGTTTGTCT+AGG | + | chr4_1:32341255-32341274 | Msa0544180:intron | 25.0% |
| !! | TTAGATTTGCCATTTCAAAA+AGG | + | chr4_1:32341296-32341315 | Msa0544180:intron | 25.0% |
| !!! | AACAATCATCCTTTTTGAAA+TGG | - | chr4_1:32341308-32341327 | None:intergenic | 25.0% |
| !!! | GAGGTATTAATGAACATTTT+TGG | + | chr4_1:32341706-32341725 | Msa0544180:intron | 25.0% |
| ! | GTGGTATATATATTGTAGTA+AGG | + | chr4_1:32341942-32341961 | Msa0544180:intron | 25.0% |
| !!! | TGAAGAATTTCATTTTTCAG+TGG | - | chr4_1:32342026-32342045 | None:intergenic | 25.0% |
| !! | TAAAGTTGAAACATTGGTTA+TGG | + | chr4_1:32342165-32342184 | Msa0544180:intron | 25.0% |
| ! | GAGTATCTACAAAAACTTAA+GGG | - | chr4_1:32340684-32340703 | None:intergenic | 25.0% |
| ! | TGAGTATCTACAAAAACTTA+AGG | - | chr4_1:32340685-32340704 | None:intergenic | 25.0% |
| !!! | CTTTTCTAAAATCACAGTAT+AGG | - | chr4_1:32340736-32340755 | None:intergenic | 25.0% |
| !!! | TACTGTGATTTTAGAAAAGT+AGG | + | chr4_1:32340737-32340756 | Msa0544180:intron | 25.0% |
| ! | GTAAATTATATACAAGTTGC+AGG | + | chr4_1:32341106-32341125 | Msa0544180:intron | 25.0% |
| ! | ATGACATAAATAGTGAATAC+AGG | + | chr4_1:32341148-32341167 | Msa0544180:intron | 25.0% |
| ! | TATAACTTACAAGTTTGTCT+AGG | + | chr4_1:32341255-32341274 | Msa0544180:intron | 25.0% |
| !! | TTAGATTTGCCATTTCAAAA+AGG | + | chr4_1:32341296-32341315 | Msa0544180:intron | 25.0% |
| !!! | AACAATCATCCTTTTTGAAA+TGG | - | chr4_1:32341308-32341327 | None:intergenic | 25.0% |
| !!! | GAGGTATTAATGAACATTTT+TGG | + | chr4_1:32341706-32341725 | Msa0544180:intron | 25.0% |
| ! | GTGGTATATATATTGTAGTA+AGG | + | chr4_1:32341942-32341961 | Msa0544180:intron | 25.0% |
| !!! | TGAAGAATTTCATTTTTCAG+TGG | - | chr4_1:32342026-32342045 | None:intergenic | 25.0% |
| !! | TAAAGTTGAAACATTGGTTA+TGG | + | chr4_1:32342165-32342184 | Msa0544180:intron | 25.0% |
| GAAAAATGTTTGAACTTTCG+TGG | + | chr4_1:32340708-32340727 | Msa0544180:intron | 30.0% | |
| ! | GTAGGATAAAGTGATTTTTG+TGG | + | chr4_1:32340755-32340774 | Msa0544180:intron | 30.0% |
| CTCTTGACAATAAATCCTTA+TGG | - | chr4_1:32340784-32340803 | None:intergenic | 30.0% | |
| CATAAGGATTTATTGTCAAG+AGG | + | chr4_1:32340782-32340801 | Msa0544180:intron | 30.0% | |
| ATAAGAAGCAAAAAGAAAGC+AGG | - | chr4_1:32341342-32341361 | None:intergenic | 30.0% | |
| ! | GCTTTCTTTTTGCTTCTTAT+TGG | + | chr4_1:32341342-32341361 | Msa0544180:intron | 30.0% |
| TAATGAGCAAACAGATAAAG+TGG | - | chr4_1:32341580-32341599 | None:intergenic | 30.0% | |
| TATGAAAAAAAATAAGGGCC+AGG | + | chr4_1:32341613-32341632 | Msa0544180:intron | 30.0% | |
| !! | CAAGAAAGTGTCTATAGTTA+TGG | + | chr4_1:32341675-32341694 | Msa0544180:intron | 30.0% |
| AGTGTCTATAGTTATGGATT+TGG | + | chr4_1:32341681-32341700 | Msa0544180:intron | 30.0% | |
| GTGTCTATAGTTATGGATTT+GGG | + | chr4_1:32341682-32341701 | Msa0544180:intron | 30.0% | |
| !!! | CAGTTGTTTTAATACAGTTG+AGG | - | chr4_1:32341774-32341793 | None:intergenic | 30.0% |
| GTAATCATCTAACATTAGCA+TGG | + | chr4_1:32341796-32341815 | Msa0544180:intron | 30.0% | |
| TTTATCATTGCTTTGTAGCT+AGG | + | chr4_1:32341895-32341914 | Msa0544180:intron | 30.0% | |
| TATATATTGTAGTAAGGCCA+AGG | + | chr4_1:32341948-32341967 | Msa0544180:intron | 30.0% | |
| ATATATTGTAGTAAGGCCAA+GGG | + | chr4_1:32341949-32341968 | Msa0544180:intron | 30.0% | |
| TAATCAACTGATGTTGCAAA+AGG | - | chr4_1:32342062-32342081 | None:intergenic | 30.0% | |
| TTATCTTTCTTCTAATGCGA+CGG | + | chr4_1:32342093-32342112 | Msa0544180:intron | 30.0% | |
| !! | TTTTTAGCCCAAAACTTAGT+TGG | - | chr4_1:32342119-32342138 | None:intergenic | 30.0% |
| !!! | ACTAAGTTTTGGGCTAAAAA+TGG | + | chr4_1:32342119-32342138 | Msa0544180:intron | 30.0% |
| AAACTAACAAGACGAGATTA+GGG | - | chr4_1:32342199-32342218 | None:intergenic | 30.0% | |
| AAAACTAACAAGACGAGATT+AGG | - | chr4_1:32342200-32342219 | None:intergenic | 30.0% | |
| AACAAAATTCGGAGCAAATT+AGG | - | chr4_1:32342276-32342295 | None:intergenic | 30.0% | |
| ! | GCATGATAGTGAACAAAATT+CGG | - | chr4_1:32342287-32342306 | None:intergenic | 30.0% |
| AGCTGTAACTTATATTGAAC+AGG | + | chr4_1:32342363-32342382 | Msa0544180:CDS | 30.0% | |
| GCTGTAACTTATATTGAACA+GGG | + | chr4_1:32342364-32342383 | Msa0544180:CDS | 30.0% | |
| TTACCTTGTAACTAGAAACA+TGG | + | chr4_1:32342426-32342445 | Msa0544180:CDS | 30.0% | |
| TTCTTCCAAGATAAAGAGAA+AGG | + | chr4_1:32342471-32342490 | Msa0544180:CDS | 30.0% | |
| GAAAAATGTTTGAACTTTCG+TGG | + | chr4_1:32340708-32340727 | Msa0544180:intron | 30.0% | |
| ! | GTAGGATAAAGTGATTTTTG+TGG | + | chr4_1:32340755-32340774 | Msa0544180:intron | 30.0% |
| CTCTTGACAATAAATCCTTA+TGG | - | chr4_1:32340784-32340803 | None:intergenic | 30.0% | |
| CATAAGGATTTATTGTCAAG+AGG | + | chr4_1:32340782-32340801 | Msa0544180:intron | 30.0% | |
| ATAAGAAGCAAAAAGAAAGC+AGG | - | chr4_1:32341342-32341361 | None:intergenic | 30.0% | |
| ! | GCTTTCTTTTTGCTTCTTAT+TGG | + | chr4_1:32341342-32341361 | Msa0544180:intron | 30.0% |
| TAATGAGCAAACAGATAAAG+TGG | - | chr4_1:32341580-32341599 | None:intergenic | 30.0% | |
| TATGAAAAAAAATAAGGGCC+AGG | + | chr4_1:32341613-32341632 | Msa0544180:intron | 30.0% | |
| !! | CAAGAAAGTGTCTATAGTTA+TGG | + | chr4_1:32341675-32341694 | Msa0544180:intron | 30.0% |
| AGTGTCTATAGTTATGGATT+TGG | + | chr4_1:32341681-32341700 | Msa0544180:intron | 30.0% | |
| GTGTCTATAGTTATGGATTT+GGG | + | chr4_1:32341682-32341701 | Msa0544180:intron | 30.0% | |
| !!! | CAGTTGTTTTAATACAGTTG+AGG | - | chr4_1:32341774-32341793 | None:intergenic | 30.0% |
| GTAATCATCTAACATTAGCA+TGG | + | chr4_1:32341796-32341815 | Msa0544180:intron | 30.0% | |
| TTTATCATTGCTTTGTAGCT+AGG | + | chr4_1:32341895-32341914 | Msa0544180:intron | 30.0% | |
| TATATATTGTAGTAAGGCCA+AGG | + | chr4_1:32341948-32341967 | Msa0544180:intron | 30.0% | |
| ATATATTGTAGTAAGGCCAA+GGG | + | chr4_1:32341949-32341968 | Msa0544180:intron | 30.0% | |
| TAATCAACTGATGTTGCAAA+AGG | - | chr4_1:32342062-32342081 | None:intergenic | 30.0% | |
| TTATCTTTCTTCTAATGCGA+CGG | + | chr4_1:32342093-32342112 | Msa0544180:intron | 30.0% | |
| !! | TTTTTAGCCCAAAACTTAGT+TGG | - | chr4_1:32342119-32342138 | None:intergenic | 30.0% |
| !!! | ACTAAGTTTTGGGCTAAAAA+TGG | + | chr4_1:32342119-32342138 | Msa0544180:intron | 30.0% |
| AAACTAACAAGACGAGATTA+GGG | - | chr4_1:32342199-32342218 | None:intergenic | 30.0% | |
| AAAACTAACAAGACGAGATT+AGG | - | chr4_1:32342200-32342219 | None:intergenic | 30.0% | |
| AACAAAATTCGGAGCAAATT+AGG | - | chr4_1:32342276-32342295 | None:intergenic | 30.0% | |
| ! | GCATGATAGTGAACAAAATT+CGG | - | chr4_1:32342287-32342306 | None:intergenic | 30.0% |
| AGCTGTAACTTATATTGAAC+AGG | + | chr4_1:32342363-32342382 | Msa0544180:CDS | 30.0% | |
| GCTGTAACTTATATTGAACA+GGG | + | chr4_1:32342364-32342383 | Msa0544180:CDS | 30.0% | |
| TTACCTTGTAACTAGAAACA+TGG | + | chr4_1:32342426-32342445 | Msa0544180:CDS | 30.0% | |
| TTCTTCCAAGATAAAGAGAA+AGG | + | chr4_1:32342471-32342490 | Msa0544180:CDS | 30.0% | |
| AAACCTCGAGAATATCAACA+TGG | - | chr4_1:32340528-32340547 | None:intergenic | 35.0% | |
| ! | TGATTTTTGTGGCAACCATA+AGG | + | chr4_1:32340766-32340785 | Msa0544180:intron | 35.0% |
| AAGAAAGAACATCGAAGACA+GGG | + | chr4_1:32340831-32340850 | Msa0544180:intron | 35.0% | |
| ! | AGATACGACACTATGAGTTT+TGG | + | chr4_1:32341055-32341074 | Msa0544180:intron | 35.0% |
| ATTATATACAAGTTGCAGGG+TGG | + | chr4_1:32341110-32341129 | Msa0544180:intron | 35.0% | |
| TATAGTTATGGATTTGGGTG+AGG | + | chr4_1:32341687-32341706 | Msa0544180:intron | 35.0% | |
| !!! | ATTTTTGGCCTTCAAAGTCT+AGG | + | chr4_1:32341721-32341740 | Msa0544180:intron | 35.0% |
| ATCTAACATTAGCATGGACA+TGG | + | chr4_1:32341802-32341821 | Msa0544180:intron | 35.0% | |
| ! | TGCCAAGTTATCTAGTTTCA+AGG | + | chr4_1:32341840-32341859 | Msa0544180:intron | 35.0% |
| ! | GCCAAGTTATCTAGTTTCAA+GGG | + | chr4_1:32341841-32341860 | Msa0544180:intron | 35.0% |
| GTCACATGAAGGTTAACATA+TGG | + | chr4_1:32341872-32341891 | Msa0544180:intron | 35.0% | |
| !! | ATACCACTTTTCATACGACT+CGG | - | chr4_1:32341929-32341948 | None:intergenic | 35.0% |
| ! | TTCTAGTTACAAGGTAAGCT+GGG | - | chr4_1:32342423-32342442 | None:intergenic | 35.0% |
| !! | TTTCTAGTTACAAGGTAAGC+TGG | - | chr4_1:32342424-32342443 | None:intergenic | 35.0% |
| !! | CTTCCATGTTTCTAGTTACA+AGG | - | chr4_1:32342432-32342451 | None:intergenic | 35.0% |
| ACATGGAAGACATGATTACA+TGG | + | chr4_1:32342443-32342462 | Msa0544180:CDS | 35.0% | |
| CATGGAAGACATGATTACAT+GGG | + | chr4_1:32342444-32342463 | Msa0544180:CDS | 35.0% | |
| AAGCACCTTTCTCTTTATCT+TGG | - | chr4_1:32342479-32342498 | None:intergenic | 35.0% | |
| AAACCTCGAGAATATCAACA+TGG | - | chr4_1:32340528-32340547 | None:intergenic | 35.0% | |
| ! | TGATTTTTGTGGCAACCATA+AGG | + | chr4_1:32340766-32340785 | Msa0544180:intron | 35.0% |
| AAGAAAGAACATCGAAGACA+GGG | + | chr4_1:32340831-32340850 | Msa0544180:intron | 35.0% | |
| ! | AGATACGACACTATGAGTTT+TGG | + | chr4_1:32341055-32341074 | Msa0544180:intron | 35.0% |
| ATTATATACAAGTTGCAGGG+TGG | + | chr4_1:32341110-32341129 | Msa0544180:intron | 35.0% | |
| TATAGTTATGGATTTGGGTG+AGG | + | chr4_1:32341687-32341706 | Msa0544180:intron | 35.0% | |
| !!! | ATTTTTGGCCTTCAAAGTCT+AGG | + | chr4_1:32341721-32341740 | Msa0544180:intron | 35.0% |
| ATCTAACATTAGCATGGACA+TGG | + | chr4_1:32341802-32341821 | Msa0544180:intron | 35.0% | |
| ! | TGCCAAGTTATCTAGTTTCA+AGG | + | chr4_1:32341840-32341859 | Msa0544180:intron | 35.0% |
| ! | GCCAAGTTATCTAGTTTCAA+GGG | + | chr4_1:32341841-32341860 | Msa0544180:intron | 35.0% |
| GTCACATGAAGGTTAACATA+TGG | + | chr4_1:32341872-32341891 | Msa0544180:intron | 35.0% | |
| !! | ATACCACTTTTCATACGACT+CGG | - | chr4_1:32341929-32341948 | None:intergenic | 35.0% |
| ! | TTCTAGTTACAAGGTAAGCT+GGG | - | chr4_1:32342423-32342442 | None:intergenic | 35.0% |
| !! | TTTCTAGTTACAAGGTAAGC+TGG | - | chr4_1:32342424-32342443 | None:intergenic | 35.0% |
| !! | CTTCCATGTTTCTAGTTACA+AGG | - | chr4_1:32342432-32342451 | None:intergenic | 35.0% |
| ACATGGAAGACATGATTACA+TGG | + | chr4_1:32342443-32342462 | Msa0544180:CDS | 35.0% | |
| CATGGAAGACATGATTACAT+GGG | + | chr4_1:32342444-32342463 | Msa0544180:CDS | 35.0% | |
| AAGCACCTTTCTCTTTATCT+TGG | - | chr4_1:32342479-32342498 | None:intergenic | 35.0% | |
| TGACCATGTTGATATTCTCG+AGG | + | chr4_1:32340522-32340541 | Msa0544180:CDS | 40.0% | |
| ! | GGTTGCTGAGATAGTTTTCA+CGG | + | chr4_1:32340803-32340822 | Msa0544180:intron | 40.0% |
| CTGTCTTCGATGTTCTTTCT+TGG | - | chr4_1:32340832-32340851 | None:intergenic | 40.0% | |
| CAAGAAAGAACATCGAAGAC+AGG | + | chr4_1:32340830-32340849 | Msa0544180:intron | 40.0% | |
| TCAAGCACATCCATCAACAA+AGG | - | chr4_1:32340864-32340883 | None:intergenic | 40.0% | |
| ! | TGATGGATGTGCTTGAGAAT+CGG | + | chr4_1:32340868-32340887 | Msa0544180:intron | 40.0% |
| !!! | CTTGGTTTTGCATTCCTCTA+AGG | + | chr4_1:32340914-32340933 | Msa0544180:intron | 40.0% |
| AATAGGTGAACTGACTGCAA+TGG | + | chr4_1:32341193-32341212 | Msa0544180:intron | 40.0% | |
| AACTGACTGCAATGGTTCAT+TGG | + | chr4_1:32341201-32341220 | Msa0544180:intron | 40.0% | |
| CTTGTCCTATTTAACTAGCC+TGG | - | chr4_1:32341634-32341653 | None:intergenic | 40.0% | |
| AGACTGTTCCTAGACTTTGA+AGG | - | chr4_1:32341732-32341751 | None:intergenic | 40.0% | |
| GCCCTTGAAACTAGATAACT+TGG | - | chr4_1:32341845-32341864 | None:intergenic | 40.0% | |
| ! | GGGCAAATTTTGTCACATGA+AGG | + | chr4_1:32341861-32341880 | Msa0544180:intron | 40.0% |
| ! | TTTCATACGACTCGGAATAG+TGG | - | chr4_1:32341921-32341940 | None:intergenic | 40.0% |
| ATTCCGAGTCGTATGAAAAG+TGG | + | chr4_1:32341923-32341942 | Msa0544180:intron | 40.0% | |
| TTCACATAAAATGGCACCCT+TGG | - | chr4_1:32341968-32341987 | None:intergenic | 40.0% | |
| GACGATGTAATGCAAAGTTG+AGG | - | chr4_1:32342254-32342273 | None:intergenic | 40.0% | |
| GCTGGGTCTGTAATTGTATT+TGG | - | chr4_1:32342406-32342425 | None:intergenic | 40.0% | |
| GCTTCAGTACAATGACAAGT+TGG | + | chr4_1:32342495-32342514 | Msa0544180:CDS | 40.0% | |
| TGACCATGTTGATATTCTCG+AGG | + | chr4_1:32340522-32340541 | Msa0544180:CDS | 40.0% | |
| ! | GGTTGCTGAGATAGTTTTCA+CGG | + | chr4_1:32340803-32340822 | Msa0544180:intron | 40.0% |
| CTGTCTTCGATGTTCTTTCT+TGG | - | chr4_1:32340832-32340851 | None:intergenic | 40.0% | |
| CAAGAAAGAACATCGAAGAC+AGG | + | chr4_1:32340830-32340849 | Msa0544180:intron | 40.0% | |
| TCAAGCACATCCATCAACAA+AGG | - | chr4_1:32340864-32340883 | None:intergenic | 40.0% | |
| ! | TGATGGATGTGCTTGAGAAT+CGG | + | chr4_1:32340868-32340887 | Msa0544180:intron | 40.0% |
| !!! | CTTGGTTTTGCATTCCTCTA+AGG | + | chr4_1:32340914-32340933 | Msa0544180:intron | 40.0% |
| AATAGGTGAACTGACTGCAA+TGG | + | chr4_1:32341193-32341212 | Msa0544180:intron | 40.0% | |
| AACTGACTGCAATGGTTCAT+TGG | + | chr4_1:32341201-32341220 | Msa0544180:intron | 40.0% | |
| CTTGTCCTATTTAACTAGCC+TGG | - | chr4_1:32341634-32341653 | None:intergenic | 40.0% | |
| AGACTGTTCCTAGACTTTGA+AGG | - | chr4_1:32341732-32341751 | None:intergenic | 40.0% | |
| GCCCTTGAAACTAGATAACT+TGG | - | chr4_1:32341845-32341864 | None:intergenic | 40.0% | |
| ! | GGGCAAATTTTGTCACATGA+AGG | + | chr4_1:32341861-32341880 | Msa0544180:intron | 40.0% |
| ! | TTTCATACGACTCGGAATAG+TGG | - | chr4_1:32341921-32341940 | None:intergenic | 40.0% |
| ATTCCGAGTCGTATGAAAAG+TGG | + | chr4_1:32341923-32341942 | Msa0544180:intron | 40.0% | |
| TTCACATAAAATGGCACCCT+TGG | - | chr4_1:32341968-32341987 | None:intergenic | 40.0% | |
| GACGATGTAATGCAAAGTTG+AGG | - | chr4_1:32342254-32342273 | None:intergenic | 40.0% | |
| GCTGGGTCTGTAATTGTATT+TGG | - | chr4_1:32342406-32342425 | None:intergenic | 40.0% | |
| GCTTCAGTACAATGACAAGT+TGG | + | chr4_1:32342495-32342514 | Msa0544180:CDS | 40.0% | |
| GGGTATGTGTCCTTTGTTGA+TGG | + | chr4_1:32340851-32340870 | Msa0544180:intron | 45.0% | |
| ATATGGGTGTGATTCCAACC+AGG | + | chr4_1:32341465-32341484 | Msa0544180:CDS | 45.0% | |
| ACATAGTGTGATGCTTTGCC+TGG | - | chr4_1:32341486-32341505 | None:intergenic | 45.0% | |
| ! | GTGTTCCTTTTACCTGCAGA+AGG | - | chr4_1:32341528-32341547 | None:intergenic | 45.0% |
| ! | AAGGGCCAGGCTAGTTAAAT+AGG | + | chr4_1:32341626-32341645 | Msa0544180:intron | 45.0% |
| GTTCACTATCATGCAGACGT+AGG | + | chr4_1:32342293-32342312 | Msa0544180:intron | 45.0% | |
| ! | ACGTAGGCTCTCAACTGTTT+TGG | + | chr4_1:32342309-32342328 | Msa0544180:CDS | 45.0% |
| GGAAGACATGATTACATGGG+TGG | + | chr4_1:32342447-32342466 | Msa0544180:CDS | 45.0% | |
| GGGTATGTGTCCTTTGTTGA+TGG | + | chr4_1:32340851-32340870 | Msa0544180:intron | 45.0% | |
| ATATGGGTGTGATTCCAACC+AGG | + | chr4_1:32341465-32341484 | Msa0544180:CDS | 45.0% | |
| ACATAGTGTGATGCTTTGCC+TGG | - | chr4_1:32341486-32341505 | None:intergenic | 45.0% | |
| ! | GTGTTCCTTTTACCTGCAGA+AGG | - | chr4_1:32341528-32341547 | None:intergenic | 45.0% |
| ! | AAGGGCCAGGCTAGTTAAAT+AGG | + | chr4_1:32341626-32341645 | Msa0544180:intron | 45.0% |
| GTTCACTATCATGCAGACGT+AGG | + | chr4_1:32342293-32342312 | Msa0544180:intron | 45.0% | |
| ! | ACGTAGGCTCTCAACTGTTT+TGG | + | chr4_1:32342309-32342328 | Msa0544180:CDS | 45.0% |
| GGAAGACATGATTACATGGG+TGG | + | chr4_1:32342447-32342466 | Msa0544180:CDS | 45.0% | |
| GTGCTTGAGAATCGGTTGAC+TGG | + | chr4_1:32340876-32340895 | Msa0544180:intron | 50.0% | |
| !! | GAGAATCGGTTGACTGGCTT+AGG | + | chr4_1:32340882-32340901 | Msa0544180:intron | 50.0% |
| !! | GGTTGACTGGCTTAGGAGTT+GGG | + | chr4_1:32340889-32340908 | Msa0544180:intron | 50.0% |
| AGTGTGATGCTTTGCCTGGT+TGG | - | chr4_1:32341482-32341501 | None:intergenic | 50.0% | |
| TTACCTGCAGAAGGCTGACA+CGG | - | chr4_1:32341519-32341538 | None:intergenic | 50.0% | |
| GTCAGCCTTCTGCAGGTAAA+AGG | + | chr4_1:32341520-32341539 | Msa0544180:intron | 50.0% | |
| ! | TGCGACGGCCAACTAAGTTT+TGG | + | chr4_1:32342108-32342127 | Msa0544180:intron | 50.0% |
| ! | GCGACGGCCAACTAAGTTTT+GGG | + | chr4_1:32342109-32342128 | Msa0544180:intron | 50.0% |
| GAACAGGGACATGTTCGAGT+TGG | + | chr4_1:32342379-32342398 | Msa0544180:CDS | 50.0% | |
| GTGCTTGAGAATCGGTTGAC+TGG | + | chr4_1:32340876-32340895 | Msa0544180:intron | 50.0% | |
| !! | GAGAATCGGTTGACTGGCTT+AGG | + | chr4_1:32340882-32340901 | Msa0544180:intron | 50.0% |
| !! | GGTTGACTGGCTTAGGAGTT+GGG | + | chr4_1:32340889-32340908 | Msa0544180:intron | 50.0% |
| AGTGTGATGCTTTGCCTGGT+TGG | - | chr4_1:32341482-32341501 | None:intergenic | 50.0% | |
| TTACCTGCAGAAGGCTGACA+CGG | - | chr4_1:32341519-32341538 | None:intergenic | 50.0% | |
| GTCAGCCTTCTGCAGGTAAA+AGG | + | chr4_1:32341520-32341539 | Msa0544180:intron | 50.0% | |
| ! | TGCGACGGCCAACTAAGTTT+TGG | + | chr4_1:32342108-32342127 | Msa0544180:intron | 50.0% |
| ! | GCGACGGCCAACTAAGTTTT+GGG | + | chr4_1:32342109-32342128 | Msa0544180:intron | 50.0% |
| GAACAGGGACATGTTCGAGT+TGG | + | chr4_1:32342379-32342398 | Msa0544180:CDS | 50.0% | |
| !! | CGGTTGACTGGCTTAGGAGT+TGG | + | chr4_1:32340888-32340907 | Msa0544180:intron | 55.0% |
| TGGCTTAGGAGTTGGGAGCT+TGG | + | chr4_1:32340896-32340915 | Msa0544180:intron | 55.0% | |
| TAACCGTGTCAGCCTTCTGC+AGG | + | chr4_1:32341513-32341532 | Msa0544180:CDS | 55.0% | |
| !! | CGGTTGACTGGCTTAGGAGT+TGG | + | chr4_1:32340888-32340907 | Msa0544180:intron | 55.0% |
| TGGCTTAGGAGTTGGGAGCT+TGG | + | chr4_1:32340896-32340915 | Msa0544180:intron | 55.0% | |
| TAACCGTGTCAGCCTTCTGC+AGG | + | chr4_1:32341513-32341532 | Msa0544180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 32340494 | 32342540 | 32340494 | ID=Msa0544180;Name=Msa0544180 |
| chr4_1 | mRNA | 32340494 | 32342540 | 32340494 | ID=Msa0544180-mRNA-1;Parent=Msa0544180;Name=Msa0544180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.66|1|1|3|0|118 |
| chr4_1 | exon | 32340494 | 32340543 | 32340494 | ID=Msa0544180-mRNA-1:exon:8290;Parent=Msa0544180-mRNA-1 |
| chr4_1 | exon | 32341460 | 32341534 | 32341460 | ID=Msa0544180-mRNA-1:exon:8291;Parent=Msa0544180-mRNA-1 |
| chr4_1 | exon | 32342309 | 32342540 | 32342309 | ID=Msa0544180-mRNA-1:exon:8292;Parent=Msa0544180-mRNA-1 |
| chr4_1 | CDS | 32340494 | 32340543 | 32340494 | ID=Msa0544180-mRNA-1:cds;Parent=Msa0544180-mRNA-1 |
| chr4_1 | CDS | 32341460 | 32341534 | 32341460 | ID=Msa0544180-mRNA-1:cds;Parent=Msa0544180-mRNA-1 |
| chr4_1 | CDS | 32342309 | 32342540 | 32342309 | ID=Msa0544180-mRNA-1:cds;Parent=Msa0544180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
