Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294120 | PNX79926.1 | 92.424 | 66 | 5 | 0 | 3 | 68 | 175 | 240 | 7.27e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294120 | sp|Q9SHL7|RP44A_ARATH | 75.758 | 66 | 16 | 0 | 3 | 68 | 868 | 933 | 6.01e-31 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294120 | A0A2K3LN28 | 92.424 | 66 | 5 | 0 | 3 | 68 | 175 | 240 | 3.47e-36 | 130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa1294120 | 0.802581 | 5.242773e-49 | -8.615850e-47 |
| Msa0004920 | Msa1294120 | 0.810148 | 1.331048e-50 | -8.615850e-47 |
| Msa0009430 | Msa1294120 | 0.970328 | 1.890783e-131 | -8.615850e-47 |
| Msa0033110 | Msa1294120 | 0.800128 | 1.666752e-48 | -8.615850e-47 |
| Msa0037250 | Msa1294120 | 0.811539 | 6.656220e-51 | -8.615850e-47 |
| Msa0083280 | Msa1294120 | 0.813555 | 2.412573e-51 | -8.615850e-47 |
| Msa0084380 | Msa1294120 | 0.800691 | 1.279838e-48 | -8.615850e-47 |
| Msa0090360 | Msa1294120 | 0.837722 | 4.396586e-57 | -8.615850e-47 |
| Msa0091410 | Msa1294120 | 0.801997 | 6.913200e-49 | -8.615850e-47 |
| Msa0115990 | Msa1294120 | 0.804426 | 2.172764e-49 | -8.615850e-47 |
| Msa0119960 | Msa1294120 | 0.800113 | 1.678490e-48 | -8.615850e-47 |
| Msa0607050 | Msa1294120 | 0.848376 | 6.376890e-60 | -8.615850e-47 |
| Msa0610430 | Msa1294120 | 0.811150 | 8.086140e-51 | -8.615850e-47 |
| Msa0612960 | Msa1294120 | 0.809012 | 2.335152e-50 | -8.615850e-47 |
| Msa0617640 | Msa1294120 | 0.818583 | 1.817330e-52 | -8.615850e-47 |
| Msa0623790 | Msa1294120 | 0.845373 | 4.229203e-59 | -8.615850e-47 |
| Msa0643560 | Msa1294120 | 0.831632 | 1.495261e-55 | -8.615850e-47 |
| Msa0647500 | Msa1294120 | 0.860600 | 1.844732e-63 | -8.615850e-47 |
| Msa0649490 | Msa1294120 | 0.842045 | 3.286004e-58 | -8.615850e-47 |
| Msa0662500 | Msa1294120 | 0.811056 | 8.471443e-51 | -8.615850e-47 |
| Msa0663390 | Msa1294120 | 0.823603 | 1.267517e-53 | -8.615850e-47 |
| Msa0666270 | Msa1294120 | 0.800147 | 1.652040e-48 | -8.615850e-47 |
| Msa0689260 | Msa1294120 | 0.800320 | 1.523018e-48 | -8.615850e-47 |
| Msa0690150 | Msa1294120 | 0.861416 | 1.042064e-63 | -8.615850e-47 |
| Msa0692830 | Msa1294120 | 0.803550 | 3.304062e-49 | -8.615850e-47 |
| Msa0697940 | Msa1294120 | 0.808282 | 3.343317e-50 | -8.615850e-47 |
| Msa0709400 | Msa1294120 | 0.850822 | 1.324611e-60 | -8.615850e-47 |
| Msa0709500 | Msa1294120 | 0.806559 | 7.755631e-50 | -8.615850e-47 |
| Msa0711780 | Msa1294120 | 0.831798 | 1.361183e-55 | -8.615850e-47 |
| Msa0720820 | Msa1294120 | 0.807569 | 4.740412e-50 | -8.615850e-47 |
| Msa0740510 | Msa1294120 | 0.801118 | 1.046956e-48 | -8.615850e-47 |
| Msa0788850 | Msa1294120 | 0.823704 | 1.200153e-53 | -8.615850e-47 |
| Msa0794670 | Msa1294120 | 0.843324 | 1.502439e-58 | -8.615850e-47 |
| Msa0796700 | Msa1294120 | 0.800162 | 1.640265e-48 | -8.615850e-47 |
| Msa0808270 | Msa1294120 | 0.815245 | 1.020414e-51 | -8.615850e-47 |
| Msa0820770 | Msa1294120 | 0.801436 | 9.011912e-49 | -8.615850e-47 |
| Msa0827350 | Msa1294120 | -0.809197 | 2.130925e-50 | -8.615850e-47 |
| Msa0830540 | Msa1294120 | 0.811316 | 7.443040e-51 | -8.615850e-47 |
| Msa0137840 | Msa1294120 | 0.826409 | 2.756582e-54 | -8.615850e-47 |
| Msa0140820 | Msa1294120 | 0.814345 | 1.615130e-51 | -8.615850e-47 |
| Msa0150300 | Msa1294120 | 0.870444 | 1.452561e-66 | -8.615850e-47 |
| Msa0159930 | Msa1294120 | 0.811550 | 6.619730e-51 | -8.615850e-47 |
| Msa0168720 | Msa1294120 | 0.808964 | 2.390571e-50 | -8.615850e-47 |
| Msa0184040 | Msa1294120 | 0.835275 | 1.844697e-56 | -8.615850e-47 |
| Msa0184780 | Msa1294120 | 0.812344 | 4.445330e-51 | -8.615850e-47 |
| Msa0189320 | Msa1294120 | 0.852068 | 5.884426e-61 | -8.615850e-47 |
| Msa0191050 | Msa1294120 | 0.832143 | 1.118107e-55 | -8.615850e-47 |
| Msa0194950 | Msa1294120 | -0.815635 | 8.356243e-52 | -8.615850e-47 |
| Msa0205130 | Msa1294120 | 0.802352 | 5.842294e-49 | -8.615850e-47 |
| Msa0209350 | Msa1294120 | 0.803078 | 4.139106e-49 | -8.615850e-47 |
| Msa0216240 | Msa1294120 | 0.824193 | 9.216324e-54 | -8.615850e-47 |
| Msa0233350 | Msa1294120 | 0.824206 | 9.151185e-54 | -8.615850e-47 |
| Msa1244600 | Msa1294120 | 0.839315 | 1.704980e-57 | -8.615850e-47 |
| Msa1267430 | Msa1294120 | 0.829018 | 6.508918e-55 | -8.615850e-47 |
| Msa1294120 | Msa1294820 | 0.813784 | 2.147652e-51 | -8.615850e-47 |
| Msa1294120 | Msa1305340 | 0.807723 | 4.396912e-50 | -8.615850e-47 |
| Msa1294120 | Msa1305660 | 0.856089 | 4.071290e-62 | -8.615850e-47 |
| Msa1294120 | Msa1306840 | 0.812880 | 3.393055e-51 | -8.615850e-47 |
| Msa1294120 | Msa1331320 | 0.805472 | 1.312940e-49 | -8.615850e-47 |
| Msa1294120 | Msa1353980 | 0.848751 | 5.018321e-60 | -8.615850e-47 |
| Msa1294120 | Msa1358250 | 0.804168 | 2.459085e-49 | -8.615850e-47 |
| Msa1294120 | Msa1361100 | 0.817151 | 3.826869e-52 | -8.615850e-47 |
| Msa1294120 | Msa1374120 | 0.810742 | 9.906373e-51 | -8.615850e-47 |
| Msa1294120 | Msa1375560 | 0.802231 | 6.188680e-49 | -8.615850e-47 |
| Msa1294120 | Msa1377500 | 0.812034 | 5.193720e-51 | -8.615850e-47 |
| Msa1294120 | Msa1386780 | 0.812665 | 3.781870e-51 | -8.615850e-47 |
| Msa1294120 | Msa1389510 | 0.806206 | 9.207223e-50 | -8.615850e-47 |
| Msa1294120 | Msa1391410 | 0.846412 | 2.207116e-59 | -8.615850e-47 |
| Msa1294120 | Msa1394290 | 0.800200 | 1.611439e-48 | -8.615850e-47 |
| Msa1294120 | Msa1407460 | 0.817189 | 3.750766e-52 | -8.615850e-47 |
| Msa1294120 | Msa1419870 | 0.816747 | 4.715261e-52 | -8.615850e-47 |
| Msa1294120 | Msa1426030 | 0.814892 | 1.222505e-51 | -8.615850e-47 |
| Msa1294120 | Msa1428880 | 0.801449 | 8.958405e-49 | -8.615850e-47 |
| Msa1294120 | Msa1432420 | 0.859125 | 5.133404e-63 | -8.615850e-47 |
| Msa1294120 | Msa1433390 | 0.839091 | 1.949365e-57 | -8.615850e-47 |
| Msa1294120 | Msa1451560 | 0.828060 | 1.108696e-54 | -8.615850e-47 |
| Msa1294120 | Msa1452240 | 0.804253 | 2.361115e-49 | -8.615850e-47 |
| Msa1294120 | Msa1454480 | 0.813240 | 2.828786e-51 | -8.615850e-47 |
| Msa1294120 | Msa1457920 | 0.826701 | 2.347418e-54 | -8.615850e-47 |
| Msa1294120 | Msa1461280 | 0.802065 | 6.694502e-49 | -8.615850e-47 |
| Msa0366890 | Msa1294120 | 0.812192 | 4.798728e-51 | -8.615850e-47 |
| Msa0376300 | Msa1294120 | 0.819360 | 1.209851e-52 | -8.615850e-47 |
| Msa0376310 | Msa1294120 | 0.826303 | 2.921621e-54 | -8.615850e-47 |
| Msa0385580 | Msa1294120 | 0.815698 | 8.092458e-52 | -8.615850e-47 |
| Msa0388700 | Msa1294120 | 0.811719 | 6.081413e-51 | -8.615850e-47 |
| Msa0398670 | Msa1294120 | 0.804863 | 1.761436e-49 | -8.615850e-47 |
| Msa0469990 | Msa1294120 | 0.818629 | 1.773868e-52 | -8.615850e-47 |
| Msa0477080 | Msa1294120 | 0.822083 | 2.863724e-53 | -8.615850e-47 |
| Msa0479970 | Msa1294120 | 0.836604 | 8.487937e-57 | -8.615850e-47 |
| Msa0481530 | Msa1294120 | 0.828191 | 1.031087e-54 | -8.615850e-47 |
| Msa0989540 | Msa1294120 | 0.810003 | 1.430686e-50 | -8.615850e-47 |
| Msa1013400 | Msa1294120 | 0.806779 | 6.970081e-50 | -8.615850e-47 |
| Msa1014420 | Msa1294120 | 0.808058 | 3.731760e-50 | -8.615850e-47 |
| Msa1017630 | Msa1294120 | 0.830627 | 2.640030e-55 | -8.615850e-47 |
| Msa1034150 | Msa1294120 | 0.805836 | 1.101367e-49 | -8.615850e-47 |
| Msa1046020 | Msa1294120 | 0.800344 | 1.506433e-48 | -8.615850e-47 |
| Msa1048280 | Msa1294120 | -0.809621 | 1.728043e-50 | -8.615850e-47 |
| Msa1051880 | Msa1294120 | 0.806091 | 9.734438e-50 | -8.615850e-47 |
| Msa1055680 | Msa1294120 | 0.816425 | 5.566347e-52 | -8.615850e-47 |
| Msa1081980 | Msa1294120 | 0.817580 | 3.062927e-52 | -8.615850e-47 |
| Msa0241390 | Msa1294120 | 0.836480 | 9.127844e-57 | -8.615850e-47 |
| Msa0260680 | Msa1294120 | 0.842435 | 2.590271e-58 | -8.615850e-47 |
| Msa0273900 | Msa1294120 | 0.802868 | 4.573154e-49 | -8.615850e-47 |
| Msa0279240 | Msa1294120 | 0.803854 | 2.857228e-49 | -8.615850e-47 |
| Msa0280090 | Msa1294120 | 0.839739 | 1.323577e-57 | -8.615850e-47 |
| Msa0309770 | Msa1294120 | 0.834811 | 2.415650e-56 | -8.615850e-47 |
| Msa0312650 | Msa1294120 | 0.802481 | 5.496752e-49 | -8.615850e-47 |
| Msa0315440 | Msa1294120 | -0.819216 | 1.304706e-52 | -8.615850e-47 |
| Msa0318980 | Msa1294120 | 0.816920 | 4.311136e-52 | -8.615850e-47 |
| Msa0334550 | Msa1294120 | 0.830740 | 2.477433e-55 | -8.615850e-47 |
| Msa1121440 | Msa1294120 | 0.824705 | 6.982378e-54 | -8.615850e-47 |
| Msa1124960 | Msa1294120 | 0.842497 | 2.494642e-58 | -8.615850e-47 |
| Msa1125760 | Msa1294120 | 0.800923 | 1.147732e-48 | -8.615850e-47 |
| Msa1147280 | Msa1294120 | 0.818925 | 1.519501e-52 | -8.615850e-47 |
| Msa1147970 | Msa1294120 | 0.814443 | 1.536579e-51 | -8.615850e-47 |
| Msa1159840 | Msa1294120 | 0.804350 | 2.253174e-49 | -8.615850e-47 |
| Msa1160590 | Msa1294120 | 0.829626 | 4.632944e-55 | -8.615850e-47 |
| Msa1165920 | Msa1294120 | 0.854010 | 1.635792e-61 | -8.615850e-47 |
| Msa1165940 | Msa1294120 | 0.847870 | 8.793037e-60 | -8.615850e-47 |
| Msa1167340 | Msa1294120 | 0.810325 | 1.219476e-50 | -8.615850e-47 |
| Msa1170410 | Msa1294120 | 0.841854 | 3.690404e-58 | -8.615850e-47 |
| Msa1171360 | Msa1294120 | 0.806836 | 6.780059e-50 | -8.615850e-47 |
| Msa1204530 | Msa1294120 | 0.802805 | 4.712491e-49 | -8.615850e-47 |
| Msa1218600 | Msa1294120 | 0.802731 | 4.882312e-49 | -8.615850e-47 |
| Msa0484720 | Msa1294120 | 0.809218 | 2.109791e-50 | -8.615850e-47 |
| Msa0493480 | Msa1294120 | 0.811817 | 5.791975e-51 | -8.615850e-47 |
| Msa0497490 | Msa1294120 | 0.812966 | 3.248574e-51 | -8.615850e-47 |
| Msa0524920 | Msa1294120 | 0.815528 | 8.828833e-52 | -8.615850e-47 |
| Msa0544180 | Msa1294120 | 0.806422 | 8.290691e-50 | -8.615850e-47 |
| Msa0548240 | Msa1294120 | 0.855588 | 5.704099e-62 | -8.615850e-47 |
| Msa0553050 | Msa1294120 | 0.840394 | 8.928661e-58 | -8.615850e-47 |
| Msa0557070 | Msa1294120 | 0.802272 | 6.068424e-49 | -8.615850e-47 |
| Msa0577500 | Msa1294120 | 0.811381 | 7.202667e-51 | -8.615850e-47 |
| Msa0585560 | Msa1294120 | 0.806015 | 1.009825e-49 | -8.615850e-47 |
| Msa0590990 | Msa1294120 | 0.804562 | 2.035762e-49 | -8.615850e-47 |
| Msa0880020 | Msa1294120 | 0.826554 | 2.545485e-54 | -8.615850e-47 |
| Msa0945970 | Msa1294120 | 0.828098 | 1.085750e-54 | -8.615850e-47 |
| Msa0963270 | Msa1294120 | 0.804764 | 1.846844e-49 | -8.615850e-47 |
| Msa0968590 | Msa1294120 | 0.844614 | 6.780364e-59 | -8.615850e-47 |
| Msa0970030 | Msa1294120 | 0.803970 | 2.702968e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294120 | MtrunA17_Chr8g0370231 | 96.970 | 66 | 2 | 0 | 3 | 68 | 869 | 934 | 2.31e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294120 | AT2G17510.2 | 75.758 | 66 | 16 | 0 | 3 | 68 | 947 | 1012 | 5.39e-32 | 116 |
| Msa1294120 | AT2G17510.1 | 75.758 | 66 | 16 | 0 | 3 | 68 | 868 | 933 | 6.11e-32 | 115 |
Find 32 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAACCCTATATATCAAAA+TGG | 0.336251 | 8_3:+51825573 | None:intergenic |
| GATACACGTTGGCTTAAATA+TGG | 0.339259 | 8_3:-51825530 | Msa1294120:three_prime_UTR |
| ACCTCCGCACTTGAAGTTTC+TGG | 0.344839 | 8_3:-51825782 | Msa1294120:three_prime_UTR |
| TGTCACAGATTCGGCATAGA+AGG | 0.357548 | 8_3:-51826068 | Msa1294120:intron |
| GCTCTTGTTGTCAAATATAC+AGG | 0.379477 | 8_3:+51826044 | None:intergenic |
| TTTGACAACAAGAGCTGAAA+AGG | 0.403110 | 8_3:-51826036 | Msa1294120:CDS |
| AGCTGAAGCTTTGGCCGGTT+AGG | 0.424906 | 8_3:+51825897 | None:intergenic |
| CTCTCATCTAGAGGTATACT+AGG | 0.448622 | 8_3:-51825872 | Msa1294120:exon |
| ACAAATTCACTTGGAGGTTG+TGG | 0.454352 | 8_3:-51825928 | Msa1294120:CDS |
| TTATCGTATAACCCATGAAA+AGG | 0.468469 | 8_3:-51826233 | None:intergenic |
| TTGTGGAGCCTCAACCTAAC+CGG | 0.471178 | 8_3:-51825911 | Msa1294120:CDS |
| AGCTTTGGCCGGTTAGGTTG+AGG | 0.480175 | 8_3:+51825903 | None:intergenic |
| ATGAGAGTAAGCTGAAGCTT+TGG | 0.481186 | 8_3:+51825888 | None:intergenic |
| GAGCAATATAAATAAATAAG+AGG | 0.483680 | 8_3:+51825810 | None:intergenic |
| CTGAAAAGGGTAGCGGAGAA+TGG | 0.489319 | 8_3:-51826022 | Msa1294120:CDS |
| GCTTGAGTAGTAGTGTTGCT+TGG | 0.510618 | 8_3:-51825679 | Msa1294120:three_prime_UTR |
| CATTGAACAAGAAGCAAGCT+AGG | 0.535530 | 8_3:-51825840 | Msa1294120:three_prime_UTR |
| GACGGTACAAATTCACTTGG+AGG | 0.540234 | 8_3:-51825934 | Msa1294120:CDS |
| GGTATTAGAATTGACTGGCA+TGG | 0.541030 | 8_3:-51825761 | Msa1294120:three_prime_UTR |
| TAGTTTCGTAAGTGTGAATG+AGG | 0.546738 | 8_3:-51825602 | Msa1294120:three_prime_UTR |
| AAACTTCAAGTGCGGAGGTG+TGG | 0.547763 | 8_3:+51825786 | None:intergenic |
| CAACACTACTACTCAAGCTA+TGG | 0.553424 | 8_3:+51825684 | None:intergenic |
| TTTCTGGTATTAGAATTGAC+TGG | 0.567157 | 8_3:-51825766 | Msa1294120:three_prime_UTR |
| TTGACAACAAGAGCTGAAAA+GGG | 0.568719 | 8_3:-51826035 | Msa1294120:CDS |
| GCAGACGGTACAAATTCACT+TGG | 0.575230 | 8_3:-51825937 | Msa1294120:CDS |
| AATCTCTCTCAAGTGCAAGA+TGG | 0.577628 | 8_3:+51825504 | None:intergenic |
| GAGTAAGCTGAAGCTTTGGC+CGG | 0.579724 | 8_3:+51825892 | None:intergenic |
| TTTATCAAAATGATACACGT+TGG | 0.591318 | 8_3:-51825541 | Msa1294120:three_prime_UTR |
| ACAAGAGCTGAAAAGGGTAG+CGG | 0.620766 | 8_3:-51826029 | Msa1294120:CDS |
| TTCAGCTTACTCTCATCTAG+AGG | 0.635613 | 8_3:-51825881 | Msa1294120:exon |
| ACCAGAAACTTCAAGTGCGG+AGG | 0.640511 | 8_3:+51825781 | None:intergenic |
| AATACCAGAAACTTCAAGTG+CGG | 0.692524 | 8_3:+51825778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGCAATATAAATAAATAAG+AGG | + | chr8_3:51825847-51825866 | None:intergenic | 20.0% |
| !!! | AATTGTCCATTTTGATATAT+AGG | - | chr8_3:51826075-51826094 | Msa1294120:intron | 20.0% |
| !!! | ATTGTCCATTTTGATATATA+GGG | - | chr8_3:51826076-51826095 | Msa1294120:intron | 20.0% |
| !! | GAGCAATATAAATAAATAAG+AGG | + | chr8_3:51825847-51825866 | None:intergenic | 20.0% |
| !!! | AATTGTCCATTTTGATATAT+AGG | - | chr8_3:51826075-51826094 | Msa1294120:intron | 20.0% |
| !!! | ATTGTCCATTTTGATATATA+GGG | - | chr8_3:51826076-51826095 | Msa1294120:intron | 20.0% |
| ! | GTACTATTAATATTACGAGA+TGG | - | chr8_3:51825466-51825485 | Msa1294120:three_prime_UTR | 25.0% |
| ! | ACTAACCCTATATATCAAAA+TGG | + | chr8_3:51826084-51826103 | None:intergenic | 25.0% |
| ! | TTTATCAAAATGATACACGT+TGG | - | chr8_3:51826113-51826132 | Msa1294120:intron | 25.0% |
| !!! | GTATAACTGTTTTGATTAGT+TGG | - | chr8_3:51826174-51826193 | Msa1294120:intron | 25.0% |
| ! | GTACTATTAATATTACGAGA+TGG | - | chr8_3:51825466-51825485 | Msa1294120:three_prime_UTR | 25.0% |
| ! | ACTAACCCTATATATCAAAA+TGG | + | chr8_3:51826084-51826103 | None:intergenic | 25.0% |
| ! | TTTATCAAAATGATACACGT+TGG | - | chr8_3:51826113-51826132 | Msa1294120:intron | 25.0% |
| !!! | GTATAACTGTTTTGATTAGT+TGG | - | chr8_3:51826174-51826193 | Msa1294120:intron | 25.0% |
| !!! | CTTTTTTCTTGTCACAGATT+CGG | - | chr8_3:51825577-51825596 | Msa1294120:three_prime_UTR | 30.0% |
| AGAGCAGAAGATTAAAAAGA+CGG | - | chr8_3:51825669-51825688 | Msa1294120:three_prime_UTR | 30.0% | |
| ! | TTTCTGGTATTAGAATTGAC+TGG | - | chr8_3:51825888-51825907 | Msa1294120:CDS | 30.0% |
| ! | ATTTTGTTGGAAGAATTGAC+TGG | - | chr8_3:51825918-51825937 | Msa1294120:CDS | 30.0% |
| !!! | CTTTTTTCTTGTCACAGATT+CGG | - | chr8_3:51825577-51825596 | Msa1294120:three_prime_UTR | 30.0% |
| AGAGCAGAAGATTAAAAAGA+CGG | - | chr8_3:51825669-51825688 | Msa1294120:three_prime_UTR | 30.0% | |
| ! | TTTCTGGTATTAGAATTGAC+TGG | - | chr8_3:51825888-51825907 | Msa1294120:CDS | 30.0% |
| ! | ATTTTGTTGGAAGAATTGAC+TGG | - | chr8_3:51825918-51825937 | Msa1294120:CDS | 30.0% |
| AGATGGTTACTCATTTCAGA+AGG | - | chr8_3:51825483-51825502 | Msa1294120:three_prime_UTR | 35.0% | |
| ! | GCTCTTGTTGTCAAATATAC+AGG | + | chr8_3:51825613-51825632 | None:intergenic | 35.0% |
| TTTGACAACAAGAGCTGAAA+AGG | - | chr8_3:51825618-51825637 | Msa1294120:three_prime_UTR | 35.0% | |
| TTGACAACAAGAGCTGAAAA+GGG | - | chr8_3:51825619-51825638 | Msa1294120:three_prime_UTR | 35.0% | |
| CAGAAGATTAAAAAGACGGA+TGG | - | chr8_3:51825673-51825692 | Msa1294120:three_prime_UTR | 35.0% | |
| ! | TTCATACAGCATTTTGCAGA+CGG | - | chr8_3:51825702-51825721 | Msa1294120:three_prime_UTR | 35.0% |
| AATACCAGAAACTTCAAGTG+CGG | + | chr8_3:51825879-51825898 | None:intergenic | 35.0% | |
| ! | GACTGGCATAGATATTTTGT+TGG | - | chr8_3:51825935-51825954 | Msa1294120:CDS | 35.0% |
| TAGTTTCGTAAGTGTGAATG+AGG | - | chr8_3:51826052-51826071 | Msa1294120:CDS | 35.0% | |
| !! | GATACACGTTGGCTTAAATA+TGG | - | chr8_3:51826124-51826143 | Msa1294120:intron | 35.0% |
| AGATGGTTACTCATTTCAGA+AGG | - | chr8_3:51825483-51825502 | Msa1294120:three_prime_UTR | 35.0% | |
| ! | GCTCTTGTTGTCAAATATAC+AGG | + | chr8_3:51825613-51825632 | None:intergenic | 35.0% |
| TTTGACAACAAGAGCTGAAA+AGG | - | chr8_3:51825618-51825637 | Msa1294120:three_prime_UTR | 35.0% | |
| TTGACAACAAGAGCTGAAAA+GGG | - | chr8_3:51825619-51825638 | Msa1294120:three_prime_UTR | 35.0% | |
| CAGAAGATTAAAAAGACGGA+TGG | - | chr8_3:51825673-51825692 | Msa1294120:three_prime_UTR | 35.0% | |
| ! | TTCATACAGCATTTTGCAGA+CGG | - | chr8_3:51825702-51825721 | Msa1294120:three_prime_UTR | 35.0% |
| AATACCAGAAACTTCAAGTG+CGG | + | chr8_3:51825879-51825898 | None:intergenic | 35.0% | |
| ! | GACTGGCATAGATATTTTGT+TGG | - | chr8_3:51825935-51825954 | Msa1294120:CDS | 35.0% |
| TAGTTTCGTAAGTGTGAATG+AGG | - | chr8_3:51826052-51826071 | Msa1294120:CDS | 35.0% | |
| !! | GATACACGTTGGCTTAAATA+TGG | - | chr8_3:51826124-51826143 | Msa1294120:intron | 35.0% |
| ACAAATTCACTTGGAGGTTG+TGG | - | chr8_3:51825726-51825745 | Msa1294120:three_prime_UTR | 40.0% | |
| ATGAGAGTAAGCTGAAGCTT+TGG | + | chr8_3:51825769-51825788 | None:intergenic | 40.0% | |
| TTCAGCTTACTCTCATCTAG+AGG | - | chr8_3:51825773-51825792 | Msa1294120:three_prime_UTR | 40.0% | |
| ! | CTCTCATCTAGAGGTATACT+AGG | - | chr8_3:51825782-51825801 | Msa1294120:three_prime_UTR | 40.0% |
| CATTGAACAAGAAGCAAGCT+AGG | - | chr8_3:51825814-51825833 | Msa1294120:three_prime_UTR | 40.0% | |
| GGTATTAGAATTGACTGGCA+TGG | - | chr8_3:51825893-51825912 | Msa1294120:CDS | 40.0% | |
| ! | GACTGGCATGGATATTTTGT+TGG | - | chr8_3:51825905-51825924 | Msa1294120:CDS | 40.0% |
| CAACACTACTACTCAAGCTA+TGG | + | chr8_3:51825973-51825992 | None:intergenic | 40.0% | |
| AATCTCTCTCAAGTGCAAGA+TGG | + | chr8_3:51826153-51826172 | None:intergenic | 40.0% | |
| ACAAATTCACTTGGAGGTTG+TGG | - | chr8_3:51825726-51825745 | Msa1294120:three_prime_UTR | 40.0% | |
| ATGAGAGTAAGCTGAAGCTT+TGG | + | chr8_3:51825769-51825788 | None:intergenic | 40.0% | |
| TTCAGCTTACTCTCATCTAG+AGG | - | chr8_3:51825773-51825792 | Msa1294120:three_prime_UTR | 40.0% | |
| ! | CTCTCATCTAGAGGTATACT+AGG | - | chr8_3:51825782-51825801 | Msa1294120:three_prime_UTR | 40.0% |
| CATTGAACAAGAAGCAAGCT+AGG | - | chr8_3:51825814-51825833 | Msa1294120:three_prime_UTR | 40.0% | |
| GGTATTAGAATTGACTGGCA+TGG | - | chr8_3:51825893-51825912 | Msa1294120:CDS | 40.0% | |
| ! | GACTGGCATGGATATTTTGT+TGG | - | chr8_3:51825905-51825924 | Msa1294120:CDS | 40.0% |
| CAACACTACTACTCAAGCTA+TGG | + | chr8_3:51825973-51825992 | None:intergenic | 40.0% | |
| AATCTCTCTCAAGTGCAAGA+TGG | + | chr8_3:51826153-51826172 | None:intergenic | 40.0% | |
| TGTCACAGATTCGGCATAGA+AGG | - | chr8_3:51825586-51825605 | Msa1294120:three_prime_UTR | 45.0% | |
| ACAAGAGCTGAAAAGGGTAG+CGG | - | chr8_3:51825625-51825644 | Msa1294120:three_prime_UTR | 45.0% | |
| GCAGACGGTACAAATTCACT+TGG | - | chr8_3:51825717-51825736 | Msa1294120:three_prime_UTR | 45.0% | |
| GACGGTACAAATTCACTTGG+AGG | - | chr8_3:51825720-51825739 | Msa1294120:three_prime_UTR | 45.0% | |
| ! | GCTTGAGTAGTAGTGTTGCT+TGG | - | chr8_3:51825975-51825994 | Msa1294120:CDS | 45.0% |
| TGTCACAGATTCGGCATAGA+AGG | - | chr8_3:51825586-51825605 | Msa1294120:three_prime_UTR | 45.0% | |
| ACAAGAGCTGAAAAGGGTAG+CGG | - | chr8_3:51825625-51825644 | Msa1294120:three_prime_UTR | 45.0% | |
| GCAGACGGTACAAATTCACT+TGG | - | chr8_3:51825717-51825736 | Msa1294120:three_prime_UTR | 45.0% | |
| GACGGTACAAATTCACTTGG+AGG | - | chr8_3:51825720-51825739 | Msa1294120:three_prime_UTR | 45.0% | |
| ! | GCTTGAGTAGTAGTGTTGCT+TGG | - | chr8_3:51825975-51825994 | Msa1294120:CDS | 45.0% |
| !! | CTGAAAAGGGTAGCGGAGAA+TGG | - | chr8_3:51825632-51825651 | Msa1294120:three_prime_UTR | 50.0% |
| TTGTGGAGCCTCAACCTAAC+CGG | - | chr8_3:51825743-51825762 | Msa1294120:three_prime_UTR | 50.0% | |
| ! | GAGTAAGCTGAAGCTTTGGC+CGG | + | chr8_3:51825765-51825784 | None:intergenic | 50.0% |
| AAACTTCAAGTGCGGAGGTG+TGG | + | chr8_3:51825871-51825890 | None:intergenic | 50.0% | |
| ACCTCCGCACTTGAAGTTTC+TGG | - | chr8_3:51825872-51825891 | Msa1294120:exon | 50.0% | |
| ACCAGAAACTTCAAGTGCGG+AGG | + | chr8_3:51825876-51825895 | None:intergenic | 50.0% | |
| !! | CTGAAAAGGGTAGCGGAGAA+TGG | - | chr8_3:51825632-51825651 | Msa1294120:three_prime_UTR | 50.0% |
| TTGTGGAGCCTCAACCTAAC+CGG | - | chr8_3:51825743-51825762 | Msa1294120:three_prime_UTR | 50.0% | |
| ! | GAGTAAGCTGAAGCTTTGGC+CGG | + | chr8_3:51825765-51825784 | None:intergenic | 50.0% |
| AAACTTCAAGTGCGGAGGTG+TGG | + | chr8_3:51825871-51825890 | None:intergenic | 50.0% | |
| ACCTCCGCACTTGAAGTTTC+TGG | - | chr8_3:51825872-51825891 | Msa1294120:exon | 50.0% | |
| ACCAGAAACTTCAAGTGCGG+AGG | + | chr8_3:51825876-51825895 | None:intergenic | 50.0% | |
| ! | AGCTTTGGCCGGTTAGGTTG+AGG | + | chr8_3:51825754-51825773 | None:intergenic | 55.0% |
| ! | AGCTGAAGCTTTGGCCGGTT+AGG | + | chr8_3:51825760-51825779 | None:intergenic | 55.0% |
| ! | AGCTTTGGCCGGTTAGGTTG+AGG | + | chr8_3:51825754-51825773 | None:intergenic | 55.0% |
| ! | AGCTGAAGCTTTGGCCGGTT+AGG | + | chr8_3:51825760-51825779 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 51825435 | 51826241 | 51825435 | ID=Msa1294120;Name=Msa1294120 |
| chr8_3 | mRNA | 51825435 | 51826241 | 51825435 | ID=Msa1294120-mRNA-1;Parent=Msa1294120;Name=Msa1294120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0.5|0.5|1|1|2|449|68 |
| chr8_3 | exon | 51825435 | 51826082 | 51825435 | ID=Msa1294120-mRNA-1:exon:14588;Parent=Msa1294120-mRNA-1 |
| chr8_3 | exon | 51826234 | 51826241 | 51826234 | ID=Msa1294120-mRNA-1:exon:14587;Parent=Msa1294120-mRNA-1 |
| chr8_3 | CDS | 51826234 | 51826241 | 51826234 | ID=Msa1294120-mRNA-1:cds;Parent=Msa1294120-mRNA-1 |
| chr8_3 | CDS | 51825884 | 51826082 | 51825884 | ID=Msa1294120-mRNA-1:cds;Parent=Msa1294120-mRNA-1 |
| chr8_3 | three_prime_UTR | 51825435 | 51825883 | 51825435 | ID=Msa1294120-mRNA-1:three_prime_utr;Parent=Msa1294120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
