Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553500 | XP_024638881.1 | 96.341 | 82 | 3 | 0 | 1 | 82 | 166 | 247 | 3.54e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553500 | sp|Q03943|IM30_PEA | 80.682 | 88 | 11 | 1 | 1 | 82 | 236 | 323 | 4.58e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553500 | G7JEX1 | 96.341 | 82 | 3 | 0 | 1 | 82 | 166 | 247 | 1.69e-47 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0141670 | Msa0553500 | 0.803576 | 3.264215e-49 | -8.615850e-47 |
| Msa0164360 | Msa0553500 | 0.813955 | 1.969465e-51 | -8.615850e-47 |
| Msa0194570 | Msa0553500 | 0.803585 | 3.249179e-49 | -8.615850e-47 |
| Msa0413740 | Msa0553500 | 0.823838 | 1.116539e-53 | -8.615850e-47 |
| Msa0418000 | Msa0553500 | 0.809645 | 1.708462e-50 | -8.615850e-47 |
| Msa0423600 | Msa0553500 | 0.834473 | 2.937596e-56 | -8.615850e-47 |
| Msa0427050 | Msa0553500 | 0.810705 | 1.009366e-50 | -8.615850e-47 |
| Msa0458790 | Msa0553500 | 0.819949 | 8.877129e-53 | -8.615850e-47 |
| Msa0470650 | Msa0553500 | 0.819545 | 1.098114e-52 | -8.615850e-47 |
| Msa0282860 | Msa0553500 | 0.809168 | 2.161937e-50 | -8.615850e-47 |
| Msa0286790 | Msa0553500 | 0.816626 | 5.019814e-52 | -8.615850e-47 |
| Msa0298940 | Msa0553500 | 0.819323 | 1.233833e-52 | -8.615850e-47 |
| Msa0302990 | Msa0553500 | -0.805483 | 1.306299e-49 | -8.615850e-47 |
| Msa0312780 | Msa0553500 | 0.808705 | 2.715784e-50 | -8.615850e-47 |
| Msa0336270 | Msa0553500 | 0.821196 | 4.591392e-53 | -8.615850e-47 |
| Msa0505390 | Msa0553500 | 0.827429 | 1.572483e-54 | -8.615850e-47 |
| Msa0524050 | Msa0553500 | 0.841812 | 3.786814e-58 | -8.615850e-47 |
| Msa0524120 | Msa0553500 | 0.802316 | 5.943187e-49 | -8.615850e-47 |
| Msa0542040 | Msa0553500 | 0.801998 | 6.909470e-49 | -8.615850e-47 |
| Msa0553500 | Msa0553520 | 0.802551 | 5.316062e-49 | -8.615850e-47 |
| Msa0553500 | Msa0574170 | 0.815874 | 7.391125e-52 | -8.615850e-47 |
| Msa0553500 | Msa0576420 | 0.809378 | 1.949140e-50 | -8.615850e-47 |
| Msa0553500 | Msa0591780 | 0.800735 | 1.253605e-48 | -8.615850e-47 |
| Msa0553500 | Msa0598250 | 0.810716 | 1.003804e-50 | -8.615850e-47 |
| Msa0553500 | Msa0619330 | 0.822398 | 2.420081e-53 | -8.615850e-47 |
| Msa0553500 | Msa0714600 | 0.801142 | 1.035104e-48 | -8.615850e-47 |
| Msa0553500 | Msa0723140 | 0.804023 | 2.635581e-49 | -8.615850e-47 |
| Msa0553500 | Msa0733000 | 0.831846 | 1.324194e-55 | -8.615850e-47 |
| Msa0553500 | Msa0756480 | 0.804256 | 2.356670e-49 | -8.615850e-47 |
| Msa0553500 | Msa0766100 | -0.808962 | 2.393626e-50 | -8.615850e-47 |
| Msa0553500 | Msa0772210 | 0.815903 | 7.280874e-52 | -8.615850e-47 |
| Msa0553500 | Msa0797220 | 0.804784 | 1.829521e-49 | -8.615850e-47 |
| Msa0553500 | Msa0835510 | 0.815500 | 8.955784e-52 | -8.615850e-47 |
| Msa0553500 | Msa0851740 | 0.803688 | 3.093150e-49 | -8.615850e-47 |
| Msa0553500 | Msa0887000 | 0.819328 | 1.230567e-52 | -8.615850e-47 |
| Msa0553500 | Msa0929400 | 0.805208 | 1.491838e-49 | -8.615850e-47 |
| Msa0553500 | Msa0975080 | 0.813405 | 2.603151e-51 | -8.615850e-47 |
| Msa0553500 | Msa0988500 | 0.810196 | 1.299796e-50 | -8.615850e-47 |
| Msa0553500 | Msa1026880 | 0.813772 | 2.161393e-51 | -8.615850e-47 |
| Msa0553500 | Msa1036350 | 0.803647 | 3.154306e-49 | -8.615850e-47 |
| Msa0553500 | Msa1038320 | 0.809694 | 1.667347e-50 | -8.615850e-47 |
| Msa0553500 | Msa1054890 | 0.825211 | 5.303504e-54 | -8.615850e-47 |
| Msa0553500 | Msa1064210 | 0.838930 | 2.145830e-57 | -8.615850e-47 |
| Msa0553500 | Msa1076630 | 0.803297 | 3.729013e-49 | -8.615850e-47 |
| Msa0553500 | Msa1079610 | 0.808319 | 3.284248e-50 | -8.615850e-47 |
| Msa0553500 | Msa1081700 | 0.814624 | 1.401181e-51 | -8.615850e-47 |
| Msa0553500 | Msa1093390 | 0.806129 | 9.558413e-50 | -8.615850e-47 |
| Msa0553500 | Msa1130650 | 0.821777 | 3.371745e-53 | -8.615850e-47 |
| Msa0553500 | Msa1142280 | 0.806232 | 9.090632e-50 | -8.615850e-47 |
| Msa0553500 | Msa1161160 | 0.811314 | 7.450164e-51 | -8.615850e-47 |
| Msa0553500 | Msa1214900 | 0.804094 | 2.547683e-49 | -8.615850e-47 |
| Msa0553500 | Msa1222030 | -0.802820 | 4.678761e-49 | -8.615850e-47 |
| Msa0553500 | Msa1226600 | 0.808177 | 3.519649e-50 | -8.615850e-47 |
| Msa0553500 | Msa1233770 | 0.803629 | 3.181887e-49 | -8.615850e-47 |
| Msa0553500 | Msa1262310 | 0.835575 | 1.549031e-56 | -8.615850e-47 |
| Msa0553500 | Msa1280020 | 0.807034 | 6.155128e-50 | -8.615850e-47 |
| Msa0553500 | Msa1287160 | 0.808879 | 2.493438e-50 | -8.615850e-47 |
| Msa0553500 | Msa1287340 | 0.815170 | 1.060122e-51 | -8.615850e-47 |
| Msa0553500 | Msa1326000 | 0.817901 | 2.592729e-52 | -8.615850e-47 |
| Msa0553500 | Msa1335970 | -0.810525 | 1.103671e-50 | -8.615850e-47 |
| Msa0553500 | Msa1355260 | 0.809555 | 1.785683e-50 | -8.615850e-47 |
| Msa0553500 | Msa1365120 | 0.809400 | 1.928143e-50 | -8.615850e-47 |
| Msa0553500 | Msa1397540 | 0.802344 | 5.864875e-49 | -8.615850e-47 |
| Msa0553500 | Msa1418200 | 0.832904 | 7.243562e-56 | -8.615850e-47 |
| Msa0553500 | Msa1428440 | 0.816946 | 4.253906e-52 | -8.615850e-47 |
| Msa0553500 | Msa1444090 | 0.835262 | 1.859194e-56 | -8.615850e-47 |
| Msa0553500 | Msa1447560 | 0.813244 | 2.823476e-51 | -8.615850e-47 |
| Msa0553500 | Msa1450420 | 0.825937 | 3.569765e-54 | -8.615850e-47 |
| Msa0553500 | Msa1451780 | 0.822784 | 1.968071e-53 | -8.615850e-47 |
| Msa0553500 | Msa1460310 | -0.805041 | 1.616713e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553500 | MtrunA17_Chr4g0033851 | 96.341 | 82 | 3 | 0 | 1 | 82 | 238 | 319 | 5.01e-50 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553500 | AT1G65260.2 | 64.286 | 84 | 28 | 1 | 1 | 82 | 176 | 259 | 1.76e-31 | 110 |
| Msa0553500 | AT1G65260.1 | 64.286 | 84 | 28 | 1 | 1 | 82 | 247 | 330 | 1.61e-30 | 109 |
Find 39 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAGGAAACAAGCATTATT+TGG | 0.142060 | 4_1:+50731887 | None:intergenic |
| TTCCATATCCATGCAGATTT+AGG | 0.230495 | 4_1:+50731833 | None:intergenic |
| GTCCTAAATCTGCATGGATA+TGG | 0.285046 | 4_1:-50731835 | Msa0553500:three_prime_UTR |
| GTCCTAGTGCTACTTCTTCC+AGG | 0.336680 | 4_1:+50732495 | None:intergenic |
| TTATATTCTCCACATAAATC+TGG | 0.363771 | 4_1:+50731926 | None:intergenic |
| CCATGCAGATTTAGGACTTC+GGG | 0.367812 | 4_1:+50731841 | None:intergenic |
| GGAGTCCCAAGCTGAAGCTC+TGG | 0.443194 | 4_1:-50734287 | Msa0553500:CDS |
| GGATATGGAAAAGCAGTATT+CGG | 0.452337 | 4_1:-50731820 | Msa0553500:three_prime_UTR |
| GAAACAAGCATTATTTGGAT+TGG | 0.464072 | 4_1:+50731892 | None:intergenic |
| CAGAAAGGAGAGCTTCCTCC+TGG | 0.470715 | 4_1:-50732513 | Msa0553500:CDS |
| CTGACCCAGAGCTTCAGCTT+GGG | 0.503821 | 4_1:+50734282 | None:intergenic |
| ACATGTTTACATCCAAAGTC+AGG | 0.513037 | 4_1:+50732075 | None:intergenic |
| GAAGCATACCTTTGAGCTAC+CGG | 0.513497 | 4_1:+50732787 | None:intergenic |
| AATTTAAAGAAAGAATTATC+CGG | 0.515202 | 4_1:-50732806 | Msa0553500:CDS |
| ACTTCATAGCCAGATTTATG+TGG | 0.517264 | 4_1:-50731935 | Msa0553500:three_prime_UTR |
| TCCATGCAGATTTAGGACTT+CGG | 0.518380 | 4_1:+50731840 | None:intergenic |
| ATTCTTTCTTTAAATTTGCA+AGG | 0.520524 | 4_1:+50732813 | None:intergenic |
| ACTGACCCAGAGCTTCAGCT+TGG | 0.533309 | 4_1:+50734281 | None:intergenic |
| TTGACAAGTGATGATCTTGA+AGG | 0.534037 | 4_1:-50734259 | Msa0553500:CDS |
| AAGCAGTATTCGGCGCAAGA+AGG | 0.541552 | 4_1:-50731810 | Msa0553500:three_prime_UTR |
| TCAATATCAGCATCTCGTAA+TGG | 0.547460 | 4_1:+50732465 | None:intergenic |
| TCGGCGCAAGAAGGGTGCAC+TGG | 0.552208 | 4_1:-50731801 | Msa0553500:three_prime_UTR |
| GAGTCCCAAGCTGAAGCTCT+GGG | 0.560277 | 4_1:-50734286 | Msa0553500:CDS |
| AAGTGATGATCTTGAAGGGA+AGG | 0.560391 | 4_1:-50734254 | Msa0553500:intron |
| AGAATTATCCGGTAGCTCAA+AGG | 0.566784 | 4_1:-50732795 | Msa0553500:intron |
| CCCGAAGTCCTAAATCTGCA+TGG | 0.585281 | 4_1:-50731841 | Msa0553500:three_prime_UTR |
| GGAAGAAGTAGCACTAGGAC+TGG | 0.585998 | 4_1:-50732492 | Msa0553500:CDS |
| TGACAAGTGATGATCTTGAA+GGG | 0.586970 | 4_1:-50734258 | Msa0553500:CDS |
| TGAAGTCTGCGTAGTTATGT+CGG | 0.589372 | 4_1:+50731952 | None:intergenic |
| ACGAGATGCTGATATTGAGA+TGG | 0.599296 | 4_1:-50732460 | Msa0553500:CDS |
| CTCCTGGAAGAAGTAGCACT+AGG | 0.602508 | 4_1:-50732497 | Msa0553500:CDS |
| TATCTTAATAGTGATGACAA+TGG | 0.609696 | 4_1:-50734308 | None:intergenic |
| AGCAGTATTCGGCGCAAGAA+GGG | 0.613508 | 4_1:-50731809 | Msa0553500:three_prime_UTR |
| TTTCTACTTTCTAACCGCAA+CGG | 0.623854 | 4_1:+50731728 | None:intergenic |
| TCAACTGAGACAAAGATCAA+AGG | 0.633129 | 4_1:-50732430 | Msa0553500:CDS |
| GGATGTAAACATGTTCAATG+AGG | 0.634606 | 4_1:-50732066 | Msa0553500:three_prime_UTR |
| AACATGTTCAATGAGGAGCA+AGG | 0.686791 | 4_1:-50732059 | Msa0553500:three_prime_UTR |
| TGTTTACATCCAAAGTCAGG+AGG | 0.695060 | 4_1:+50732078 | None:intergenic |
| CTAGTGCTACTTCTTCCAGG+AGG | 0.756317 | 4_1:+50732498 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAAATAAACCAA+GGG | + | chr4_1:50732153-50732172 | None:intergenic | 10.0% |
| !! | AAATAAATTAAAATAAACCA+AGG | + | chr4_1:50732154-50732173 | None:intergenic | 10.0% |
| !!! | AGAATAAATATATTTTACTA+TGG | + | chr4_1:50732994-50733013 | None:intergenic | 10.0% |
| !!! | TTTTTTCTATAATTTGAATT+CGG | + | chr4_1:50734275-50734294 | None:intergenic | 10.0% |
| !! | TACATAGGAAATAAAAAATT+AGG | + | chr4_1:50732207-50732226 | None:intergenic | 15.0% |
| !!! | TTTTAAATACATCTTTACAT+AGG | + | chr4_1:50732222-50732241 | None:intergenic | 15.0% |
| !!! | AATATATTTTACTATGGATA+TGG | + | chr4_1:50732988-50733007 | None:intergenic | 15.0% |
| !! | ATAATTATATGTGAAATTCT+TGG | - | chr4_1:50733085-50733104 | Msa0553500:intron | 15.0% |
| !! | AATTTAAAGAAAGAATTATC+CGG | - | chr4_1:50733220-50733239 | Msa0553500:intron | 15.0% |
| !!! | TCTTCAAATTTACTTTTTTT+AGG | + | chr4_1:50733421-50733440 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTTGAAATTGAAA+TGG | - | chr4_1:50731845-50731864 | Msa0553500:three_prime_UTR | 20.0% |
| !! | GGAAATAAAAAATTAGGTTT+GGG | + | chr4_1:50732201-50732220 | None:intergenic | 20.0% |
| !! | AGGAAATAAAAAATTAGGTT+TGG | + | chr4_1:50732202-50732221 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTCAGATGTCAA+AGG | - | chr4_1:50732299-50732318 | Msa0553500:intron | 20.0% |
| !! | TATTGTTGAATAGAAAACAT+GGG | + | chr4_1:50732341-50732360 | None:intergenic | 20.0% |
| !! | ATATTGTTGAATAGAAAACA+TGG | + | chr4_1:50732342-50732361 | None:intergenic | 20.0% |
| !!! | TTCAACAATATTGTTTTGAA+CGG | - | chr4_1:50732351-50732370 | Msa0553500:intron | 20.0% |
| !! | GTTGGAAATATATAGAAAAA+TGG | + | chr4_1:50732763-50732782 | None:intergenic | 20.0% |
| !!! | TTTATGTAAATCTTTTCCTT+TGG | - | chr4_1:50732892-50732911 | Msa0553500:intron | 20.0% |
| !!! | TTATGTAAATCTTTTCCTTT+GGG | - | chr4_1:50732893-50732912 | Msa0553500:intron | 20.0% |
| !! | ATAACTAATTAATTTCCCAA+AGG | + | chr4_1:50732911-50732930 | None:intergenic | 20.0% |
| !! | TTTGGGAAATTAATTAGTTA+TGG | - | chr4_1:50732910-50732929 | Msa0553500:intron | 20.0% |
| !! | ATTCTTTCTTTAAATTTGCA+AGG | + | chr4_1:50733216-50733235 | None:intergenic | 20.0% |
| !!! | ATACTTTTTTGTTTCATTGT+TGG | - | chr4_1:50733475-50733494 | Msa0553500:intron | 20.0% |
| !!! | TGATAATATTATTTGACTTG+TGG | - | chr4_1:50733711-50733730 | Msa0553500:intron | 20.0% |
| !!! | CCATTTTTTTTATCCAAATT+TGG | + | chr4_1:50733737-50733756 | None:intergenic | 20.0% |
| !! | CCAAATTTGGATAAAAAAAA+TGG | - | chr4_1:50733734-50733753 | Msa0553500:intron | 20.0% |
| !! | AAAATTTGAAAAATATGCAC+AGG | + | chr4_1:50734159-50734178 | None:intergenic | 20.0% |
| ! | ATCGTAATATTTACATAGCT+AGG | - | chr4_1:50732256-50732275 | Msa0553500:intron | 25.0% |
| ! | TTTCATTCTATCTCTTTGTT+TGG | - | chr4_1:50732431-50732450 | Msa0553500:CDS | 25.0% |
| !! | TTCATTCTATCTCTTTGTTT+GGG | - | chr4_1:50732432-50732451 | Msa0553500:CDS | 25.0% |
| ! | TTAACACCAATTTGGAAATT+AGG | + | chr4_1:50732964-50732983 | None:intergenic | 25.0% |
| ! | AATAGAGTGTATGTATGAAT+AGG | - | chr4_1:50733270-50733289 | Msa0553500:intron | 25.0% |
| ! | ATAGAGTGTATGTATGAATA+GGG | - | chr4_1:50733271-50733290 | Msa0553500:intron | 25.0% |
| !! | AAAAAGTATATGTAGAACGT+TGG | + | chr4_1:50733464-50733483 | None:intergenic | 25.0% |
| !!! | ATCAAAGGAGTTTTAAAGTA+TGG | - | chr4_1:50733611-50733630 | Msa0553500:intron | 25.0% |
| ! | GGATAATATTATCATATCGA+AGG | + | chr4_1:50733806-50733825 | None:intergenic | 25.0% |
| ! | ATATTATCCTGACATGTATA+CGG | - | chr4_1:50733817-50733836 | Msa0553500:intron | 25.0% |
| ! | TTATATTCTCCACATAAATC+TGG | + | chr4_1:50734103-50734122 | None:intergenic | 25.0% |
| AAGATAGACACAAACTCATT+TGG | + | chr4_1:50731816-50731835 | None:intergenic | 30.0% | |
| TGAAATTGAAATGGCAGAAA+CGG | - | chr4_1:50731854-50731873 | Msa0553500:three_prime_UTR | 30.0% | |
| CAAGAGATAGAATGAAAACA+GGG | + | chr4_1:50731968-50731987 | None:intergenic | 30.0% | |
| ACAAGAGATAGAATGAAAAC+AGG | + | chr4_1:50731969-50731988 | None:intergenic | 30.0% | |
| CAAAACTTTGGACAAAACTT+TGG | + | chr4_1:50731994-50732013 | None:intergenic | 30.0% | |
| TTCACAGTTGTACAAAACTT+TGG | + | chr4_1:50732006-50732025 | None:intergenic | 30.0% | |
| ! | AAAATAAACCAAGGGTGTAT+TGG | + | chr4_1:50732145-50732164 | None:intergenic | 30.0% |
| ! | ATAGAAAACATGGGTTAAAG+AGG | + | chr4_1:50732332-50732351 | None:intergenic | 30.0% |
| TGGAAGAAATAGAAGACATT+GGG | - | chr4_1:50732505-50732524 | Msa0553500:CDS | 30.0% | |
| AATAAAAAATCCCCCTCATT+TGG | - | chr4_1:50732562-50732581 | Msa0553500:intron | 30.0% | |
| ATAAAAAATCCCCCTCATTT+GGG | - | chr4_1:50732563-50732582 | Msa0553500:intron | 30.0% | |
| TATTTCCTAACTAGTTCCTA+AGG | + | chr4_1:50732832-50732851 | None:intergenic | 30.0% | |
| AACAAGCCTAATTTCCAAAT+TGG | - | chr4_1:50732955-50732974 | Msa0553500:intron | 30.0% | |
| ! | GATATGGATTAACACCAATT+TGG | + | chr4_1:50732972-50732991 | None:intergenic | 30.0% |
| ! | TAAAAGCATGACAAAGTTGA+TGG | + | chr4_1:50733020-50733039 | None:intergenic | 30.0% |
| ! | TGTCATGCTTTTATTGAGTT+TGG | - | chr4_1:50733027-50733046 | Msa0553500:intron | 30.0% |
| !! | TCTTTGCCATATATTTTTGC+AGG | - | chr4_1:50733116-50733135 | Msa0553500:intron | 30.0% |
| CACAAACCTGCAAAAATATA+TGG | + | chr4_1:50733125-50733144 | None:intergenic | 30.0% | |
| ! | TAGGCATAATACAATGCTTT+TGG | + | chr4_1:50733402-50733421 | None:intergenic | 30.0% |
| GAAACAAGCATTATTTGGAT+TGG | + | chr4_1:50734137-50734156 | None:intergenic | 30.0% | |
| TATAGAAAAAAACTCCGTTG+CGG | - | chr4_1:50734284-50734303 | Msa0553500:CDS | 30.0% | |
| TTGACAAGTGATGATCTTGA+AGG | - | chr4_1:50731767-50731786 | Msa0553500:three_prime_UTR | 35.0% | |
| TGACAAGTGATGATCTTGAA+GGG | - | chr4_1:50731768-50731787 | Msa0553500:three_prime_UTR | 35.0% | |
| ACGGAAAAGAAAGAAAACCT+AGG | - | chr4_1:50731873-50731892 | Msa0553500:three_prime_UTR | 35.0% | |
| CGGAAAAGAAAGAAAACCTA+GGG | - | chr4_1:50731874-50731893 | Msa0553500:three_prime_UTR | 35.0% | |
| GGAAAAGAAAGAAAACCTAG+GGG | - | chr4_1:50731875-50731894 | Msa0553500:three_prime_UTR | 35.0% | |
| ! | TATCTCTTTGTTTGGGAGTT+TGG | - | chr4_1:50732439-50732458 | Msa0553500:CDS | 35.0% |
| GTGGAAGAAATAGAAGACAT+TGG | - | chr4_1:50732504-50732523 | Msa0553500:CDS | 35.0% | |
| AAGAAATAGAAGACATTGGG+AGG | - | chr4_1:50732508-50732527 | Msa0553500:CDS | 35.0% | |
| TAAAAAATCCCCCTCATTTG+GGG | - | chr4_1:50732564-50732583 | Msa0553500:intron | 35.0% | |
| GGGAACTCAAAAATTGCATT+GGG | - | chr4_1:50732585-50732604 | Msa0553500:intron | 35.0% | |
| GGAACTCAAAAATTGCATTG+GGG | - | chr4_1:50732586-50732605 | Msa0553500:intron | 35.0% | |
| GAACTCAAAAATTGCATTGG+GGG | - | chr4_1:50732587-50732606 | Msa0553500:intron | 35.0% | |
| !! | TAGTTCCTAAGGCTTTGTTT+GGG | + | chr4_1:50732821-50732840 | None:intergenic | 35.0% |
| TTGCAGGTTTGTGTGATAAT+TGG | - | chr4_1:50733132-50733151 | Msa0553500:intron | 35.0% | |
| AAGTATATGTAGAACGTTGG+TGG | + | chr4_1:50733461-50733480 | None:intergenic | 35.0% | |
| TCAATATCAGCATCTCGTAA+TGG | + | chr4_1:50733564-50733583 | None:intergenic | 35.0% | |
| TCAACTGAGACAAAGATCAA+AGG | - | chr4_1:50733596-50733615 | Msa0553500:intron | 35.0% | |
| TATCAACATTGCACAGCTAA+AGG | - | chr4_1:50733681-50733700 | Msa0553500:intron | 35.0% | |
| !! | ATTTGACTTGTGGCCAAATT+TGG | - | chr4_1:50733721-50733740 | Msa0553500:intron | 35.0% |
| ACATGTTTACATCCAAAGTC+AGG | + | chr4_1:50733954-50733973 | None:intergenic | 35.0% | |
| GGATGTAAACATGTTCAATG+AGG | - | chr4_1:50733960-50733979 | Msa0553500:intron | 35.0% | |
| ACTTCATAGCCAGATTTATG+TGG | - | chr4_1:50734091-50734110 | Msa0553500:intron | 35.0% | |
| CACAGGAAACAAGCATTATT+TGG | + | chr4_1:50734142-50734161 | None:intergenic | 35.0% | |
| TTCCATATCCATGCAGATTT+AGG | + | chr4_1:50734196-50734215 | None:intergenic | 35.0% | |
| GGATATGGAAAAGCAGTATT+CGG | - | chr4_1:50734206-50734225 | Msa0553500:intron | 35.0% | |
| TTTCTACTTTCTAACCGCAA+CGG | + | chr4_1:50734301-50734320 | None:intergenic | 35.0% | |
| AAGTGATGATCTTGAAGGGA+AGG | - | chr4_1:50731772-50731791 | Msa0553500:three_prime_UTR | 40.0% | |
| GAGATAGAATGAAAACAGGG+CGG | + | chr4_1:50731965-50731984 | None:intergenic | 40.0% | |
| ACGAAAATCCAATACACCCT+TGG | - | chr4_1:50732134-50732153 | Msa0553500:intron | 40.0% | |
| CGTATGAGAAACGAGATCAA+AGG | - | chr4_1:50732174-50732193 | Msa0553500:intron | 40.0% | |
| !! | AGGTTTGCTATGTTTCTCAG+CGG | - | chr4_1:50732276-50732295 | Msa0553500:intron | 40.0% |
| ! | TCTTTGTTTGGGAGTTTGGA+GGG | - | chr4_1:50732443-50732462 | Msa0553500:CDS | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | - | chr4_1:50732476-50732495 | Msa0553500:CDS | 40.0% |
| TTTGGAAAAAAGGAAGGAGC+AGG | - | chr4_1:50732482-50732501 | Msa0553500:CDS | 40.0% | |
| AAAAAATCCCCCTCATTTGG+GGG | - | chr4_1:50732565-50732584 | Msa0553500:intron | 40.0% | |
| !!! | TTTTGAGTTCCCCCAAATGA+GGG | + | chr4_1:50732577-50732596 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTCCCCCAAATG+AGG | + | chr4_1:50732578-50732597 | None:intergenic | 40.0% |
| GGGGAACTCAAAAATTGCAT+TGG | - | chr4_1:50732584-50732603 | Msa0553500:intron | 40.0% | |
| TCAAAAATTGCATTGGGGGA+GGG | - | chr4_1:50732591-50732610 | Msa0553500:intron | 40.0% | |
| !! | TAAGGCTTTGTTTGGGAGTT+TGG | + | chr4_1:50732814-50732833 | None:intergenic | 40.0% |
| AAACTCCCAAACAAAGCCTT+AGG | - | chr4_1:50732813-50732832 | Msa0553500:CDS | 40.0% | |
| !! | CTAGTTCCTAAGGCTTTGTT+TGG | + | chr4_1:50732822-50732841 | None:intergenic | 40.0% |
| CAAAGCCTTAGGAACTAGTT+AGG | - | chr4_1:50732824-50732843 | Msa0553500:CDS | 40.0% | |
| AGAATTATCCGGTAGCTCAA+AGG | - | chr4_1:50733231-50733250 | Msa0553500:intron | 40.0% | |
| ! | TTCTGGTTGCAAAACAGGAA+AGG | + | chr4_1:50733337-50733356 | None:intergenic | 40.0% |
| ! | ACAACTTCTGGTTGCAAAAC+AGG | + | chr4_1:50733342-50733361 | None:intergenic | 40.0% |
| TTGTCTAACCGGTGAAAGAA+GGG | - | chr4_1:50733358-50733377 | Msa0553500:intron | 40.0% | |
| TATTCACTCCCTTCTTTCAC+CGG | + | chr4_1:50733369-50733388 | None:intergenic | 40.0% | |
| ACTGTTTGCTTCAAGCAGAA+AGG | - | chr4_1:50733498-50733517 | Msa0553500:intron | 40.0% | |
| ACGAGATGCTGATATTGAGA+TGG | - | chr4_1:50733566-50733585 | Msa0553500:intron | 40.0% | |
| ATCCTGACATGTATACGGTT+AGG | - | chr4_1:50733822-50733841 | Msa0553500:intron | 40.0% | |
| ATCCTAACCGTATACATGTC+AGG | + | chr4_1:50733827-50733846 | None:intergenic | 40.0% | |
| ! | TTTTTGCTTCCTCCTGACTT+TGG | - | chr4_1:50733939-50733958 | Msa0553500:intron | 40.0% |
| TGTTTACATCCAAAGTCAGG+AGG | + | chr4_1:50733951-50733970 | None:intergenic | 40.0% | |
| AACATGTTCAATGAGGAGCA+AGG | - | chr4_1:50733967-50733986 | Msa0553500:intron | 40.0% | |
| TGAAGTCTGCGTAGTTATGT+CGG | + | chr4_1:50734077-50734096 | None:intergenic | 40.0% | |
| ! | TCCATGCAGATTTAGGACTT+CGG | + | chr4_1:50734189-50734208 | None:intergenic | 40.0% |
| GTCCTAAATCTGCATGGATA+TGG | - | chr4_1:50734191-50734210 | Msa0553500:intron | 40.0% | |
| ! | CTCTTTGTTTGGGAGTTTGG+AGG | - | chr4_1:50732442-50732461 | Msa0553500:CDS | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr4_1:50732444-50732463 | Msa0553500:CDS | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | - | chr4_1:50732472-50732491 | Msa0553500:CDS | 45.0% |
| ATAGAAGACATTGGGAGGAG+AGG | - | chr4_1:50732513-50732532 | Msa0553500:CDS | 45.0% | |
| TAGAAGACATTGGGAGGAGA+GGG | - | chr4_1:50732514-50732533 | Msa0553500:intron | 45.0% | |
| ! | TTTGAGTTCCCCCAAATGAG+GGG | + | chr4_1:50732576-50732595 | None:intergenic | 45.0% |
| CTCAAAAATTGCATTGGGGG+AGG | - | chr4_1:50732590-50732609 | Msa0553500:intron | 45.0% | |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr4_1:50732444-50732463 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr4_1:50732810-50732829 | None:intergenic | 45.0% |
| !! | GGCTTGTTCTTGCAGTTTTG+TGG | + | chr4_1:50732943-50732962 | None:intergenic | 45.0% |
| GAAGCATACCTTTGAGCTAC+CGG | + | chr4_1:50733242-50733261 | None:intergenic | 45.0% | |
| GCAACCAGAAGTTGTCTAAC+CGG | - | chr4_1:50733347-50733366 | Msa0553500:intron | 45.0% | |
| ! | TTCACCGGTTAGACAACTTC+TGG | + | chr4_1:50733354-50733373 | None:intergenic | 45.0% |
| GTTGTCTAACCGGTGAAAGA+AGG | - | chr4_1:50733357-50733376 | Msa0553500:intron | 45.0% | |
| ! | CCATGCAGATTTAGGACTTC+GGG | + | chr4_1:50734188-50734207 | None:intergenic | 45.0% |
| ! | AGAAAACCTAGGGGCATGCT+TGG | - | chr4_1:50731884-50731903 | Msa0553500:three_prime_UTR | 50.0% |
| GGAAAAAAGGAAGGAGCAGG+TGG | - | chr4_1:50732485-50732504 | Msa0553500:CDS | 50.0% | |
| TTGAGTTCCCCCAAATGAGG+GGG | + | chr4_1:50732575-50732594 | None:intergenic | 50.0% | |
| ! | ATTGCATTGGGGGAGGGTTT+TGG | - | chr4_1:50732597-50732616 | Msa0553500:intron | 50.0% |
| ! | TTGCATTGGGGGAGGGTTTT+GGG | - | chr4_1:50732598-50732617 | Msa0553500:intron | 50.0% |
| !!! | AGGGTTTTGGGGGTTATGGA+GGG | - | chr4_1:50732610-50732629 | Msa0553500:intron | 50.0% |
| TTTGGGAGTTTGGAGGGGAA+GGG | + | chr4_1:50732804-50732823 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr4_1:50732811-50732830 | None:intergenic | 50.0% |
| !! | CTAGTGCTACTTCTTCCAGG+AGG | + | chr4_1:50733531-50733550 | None:intergenic | 50.0% |
| CTCCTGGAAGAAGTAGCACT+AGG | - | chr4_1:50733529-50733548 | Msa0553500:intron | 50.0% | |
| !! | GTCCTAGTGCTACTTCTTCC+AGG | + | chr4_1:50733534-50733553 | None:intergenic | 50.0% |
| GGAAGAAGTAGCACTAGGAC+TGG | - | chr4_1:50733534-50733553 | Msa0553500:intron | 50.0% | |
| AGGAGGAAGCAAAAACCTGC+GGG | + | chr4_1:50733934-50733953 | None:intergenic | 50.0% | |
| CAGGAGGAAGCAAAAACCTG+CGG | + | chr4_1:50733935-50733954 | None:intergenic | 50.0% | |
| CCCGAAGTCCTAAATCTGCA+TGG | - | chr4_1:50734185-50734204 | Msa0553500:intron | 50.0% | |
| AAGCAGTATTCGGCGCAAGA+AGG | - | chr4_1:50734216-50734235 | Msa0553500:intron | 50.0% | |
| AGCAGTATTCGGCGCAAGAA+GGG | - | chr4_1:50734217-50734236 | Msa0553500:intron | 50.0% | |
| GAGTCCCAAGCTGAAGCTCT+GGG | - | chr4_1:50731740-50731759 | Msa0553500:three_prime_UTR | 55.0% | |
| CTGACCCAGAGCTTCAGCTT+GGG | + | chr4_1:50731747-50731766 | None:intergenic | 55.0% | |
| ACTGACCCAGAGCTTCAGCT+TGG | + | chr4_1:50731748-50731767 | None:intergenic | 55.0% | |
| TGCAAACCAAGCATGCCCCT+AGG | + | chr4_1:50731893-50731912 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | - | chr4_1:50732447-50732466 | Msa0553500:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | - | chr4_1:50732448-50732467 | Msa0553500:CDS | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | - | chr4_1:50732449-50732468 | Msa0553500:CDS | 55.0% | |
| ACATTGGGAGGAGAGGGCTT+TGG | - | chr4_1:50732520-50732539 | Msa0553500:intron | 55.0% | |
| ! | TGCATTGGGGGAGGGTTTTG+GGG | - | chr4_1:50732599-50732618 | Msa0553500:intron | 55.0% |
| !!! | GAGGGTTTTGGGGGTTATGG+AGG | - | chr4_1:50732609-50732628 | Msa0553500:intron | 55.0% |
| GTTTGGGAGTTTGGAGGGGA+AGG | + | chr4_1:50732448-50732467 | None:intergenic | 55.0% | |
| CAGAAAGGAGAGCTTCCTCC+TGG | - | chr4_1:50733513-50733532 | Msa0553500:intron | 55.0% | |
| AGTAACAGACTCAGACCCGC+AGG | - | chr4_1:50733916-50733935 | Msa0553500:intron | 55.0% | |
| GGAGTCCCAAGCTGAAGCTC+TGG | - | chr4_1:50731739-50731758 | Msa0553500:three_prime_UTR | 60.0% | |
| ! | TTGGGAGGAGAGGGCTTTGG+AGG | - | chr4_1:50732523-50732542 | Msa0553500:intron | 60.0% |
| !! | GCATTGGGGGAGGGTTTTGG+GGG | - | chr4_1:50732600-50732619 | Msa0553500:intron | 60.0% |
| !!! | GGGGAGGGTTTTGGGGGTTA+TGG | - | chr4_1:50732606-50732625 | Msa0553500:intron | 60.0% |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | chr4_1:50732799-50732818 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAAGGGA+GGG | + | chr4_1:50732800-50732819 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGGGA+GGG | - | chr4_1:50732453-50732472 | Msa0553500:CDS | 65.0% | |
| GAGTTTGGAGGGGAGGGGAG+GGG | - | chr4_1:50732454-50732473 | Msa0553500:CDS | 65.0% | |
| !! | AAGGGAGGGGAGCGCTTTGG+GGG | + | chr4_1:50732786-50732805 | None:intergenic | 65.0% |
| !! | GAAGGGAGGGGAGCGCTTTG+GGG | + | chr4_1:50732787-50732806 | None:intergenic | 65.0% |
| !! | GGAAGGGAGGGGAGCGCTTT+GGG | + | chr4_1:50732788-50732807 | None:intergenic | 65.0% |
| GGGAGTTTGGAGGGGAAGGG+AGG | + | chr4_1:50732801-50732820 | None:intergenic | 65.0% | |
| ! | TCGGCGCAAGAAGGGTGCAC+TGG | - | chr4_1:50734225-50734244 | Msa0553500:intron | 65.0% |
| GGGAGTTTGGAGGGGAGGGG+AGG | - | chr4_1:50732452-50732471 | Msa0553500:CDS | 70.0% | |
| TTTGGAGGGGAGGGGAGGGG+AGG | - | chr4_1:50732457-50732476 | Msa0553500:CDS | 70.0% | |
| TTGGAGGGGAGGGGAGGGGA+GGG | - | chr4_1:50732458-50732477 | Msa0553500:CDS | 70.0% | |
| ! | GGGAGGGGAGGGGAGGGTTT+TGG | - | chr4_1:50732464-50732483 | Msa0553500:CDS | 70.0% |
| !! | AGGGGAGCGCTTTGGGGGGT+TGG | + | chr4_1:50732781-50732800 | None:intergenic | 70.0% |
| !! | AGGGAGGGGAGCGCTTTGGG+GGG | + | chr4_1:50732785-50732804 | None:intergenic | 70.0% |
| !! | GGGAAGGGAGGGGAGCGCTT+TGG | + | chr4_1:50732789-50732808 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 50731725 | 50734323 | 50731725 | ID=Msa0553500;Name=Msa0553500 |
| chr4_1 | mRNA | 50731725 | 50734323 | 50731725 | ID=Msa0553500-mRNA-1;Parent=Msa0553500;Name=Msa0553500-mRNA-1;_AED=0.13;_eAED=0.13;_QI=6|1|1|1|0.66|0.5|4|387|82 |
| chr4_1 | exon | 50731725 | 50732110 | 50731725 | ID=Msa0553500-mRNA-1:exon:14383;Parent=Msa0553500-mRNA-1 |
| chr4_1 | exon | 50732421 | 50732532 | 50732421 | ID=Msa0553500-mRNA-1:exon:14382;Parent=Msa0553500-mRNA-1 |
| chr4_1 | exon | 50732796 | 50732870 | 50732796 | ID=Msa0553500-mRNA-1:exon:14381;Parent=Msa0553500-mRNA-1 |
| chr4_1 | exon | 50734255 | 50734323 | 50734255 | ID=Msa0553500-mRNA-1:exon:14380;Parent=Msa0553500-mRNA-1 |
| chr4_1 | five_prime_UTR | 50734318 | 50734323 | 50734318 | ID=Msa0553500-mRNA-1:five_prime_utr;Parent=Msa0553500-mRNA-1 |
| chr4_1 | CDS | 50734255 | 50734317 | 50734255 | ID=Msa0553500-mRNA-1:cds;Parent=Msa0553500-mRNA-1 |
| chr4_1 | CDS | 50732796 | 50732870 | 50732796 | ID=Msa0553500-mRNA-1:cds;Parent=Msa0553500-mRNA-1 |
| chr4_1 | CDS | 50732422 | 50732532 | 50732422 | ID=Msa0553500-mRNA-1:cds;Parent=Msa0553500-mRNA-1 |
| chr4_1 | three_prime_UTR | 50732421 | 50732421 | 50732421 | ID=Msa0553500-mRNA-1:three_prime_utr;Parent=Msa0553500-mRNA-1 |
| chr4_1 | three_prime_UTR | 50731725 | 50732110 | 50731725 | ID=Msa0553500-mRNA-1:three_prime_utr;Parent=Msa0553500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
