Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142280 | PNX93545.1 | 99.029 | 103 | 1 | 0 | 1 | 103 | 198 | 300 | 1.09e-67 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142280 | sp|Q8LFG1|AMY2_ARATH | 48.039 | 102 | 45 | 2 | 1 | 100 | 316 | 411 | 2.38e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142280 | A0A2K3MRW5 | 99.029 | 103 | 1 | 0 | 1 | 103 | 198 | 300 | 5.20e-68 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1142280 | 0.803849 | 2.863879e-49 | -8.615850e-47 |
| Msa0027540 | Msa1142280 | 0.822711 | 2.046624e-53 | -8.615850e-47 |
| Msa0030000 | Msa1142280 | 0.804162 | 2.466235e-49 | -8.615850e-47 |
| Msa0075310 | Msa1142280 | 0.825589 | 4.317066e-54 | -8.615850e-47 |
| Msa0091770 | Msa1142280 | 0.804802 | 1.813436e-49 | -8.615850e-47 |
| Msa0105420 | Msa1142280 | 0.817086 | 3.956316e-52 | -8.615850e-47 |
| Msa0606060 | Msa1142280 | 0.807400 | 5.148281e-50 | -8.615850e-47 |
| Msa0619330 | Msa1142280 | 0.823371 | 1.436208e-53 | -8.615850e-47 |
| Msa0621890 | Msa1142280 | 0.820403 | 6.988726e-53 | -8.615850e-47 |
| Msa0622390 | Msa1142280 | 0.807096 | 5.973672e-50 | -8.615850e-47 |
| Msa0624730 | Msa1142280 | 0.827131 | 1.853671e-54 | -8.615850e-47 |
| Msa0626230 | Msa1142280 | 0.803182 | 3.938771e-49 | -8.615850e-47 |
| Msa0631840 | Msa1142280 | 0.800183 | 1.624088e-48 | -8.615850e-47 |
| Msa0647000 | Msa1142280 | 0.808925 | 2.437155e-50 | -8.615850e-47 |
| Msa0657670 | Msa1142280 | 0.800210 | 1.604092e-48 | -8.615850e-47 |
| Msa0667220 | Msa1142280 | 0.802541 | 5.342739e-49 | -8.615850e-47 |
| Msa0674220 | Msa1142280 | 0.827647 | 1.393904e-54 | -8.615850e-47 |
| Msa0674300 | Msa1142280 | 0.803081 | 4.132423e-49 | -8.615850e-47 |
| Msa0686610 | Msa1142280 | 0.800808 | 1.211447e-48 | -8.615850e-47 |
| Msa0706380 | Msa1142280 | 0.806249 | 9.018064e-50 | -8.615850e-47 |
| Msa0715310 | Msa1142280 | 0.800421 | 1.452805e-48 | -8.615850e-47 |
| Msa0723140 | Msa1142280 | 0.800236 | 1.584338e-48 | -8.615850e-47 |
| Msa0725480 | Msa1142280 | -0.848813 | 4.823887e-60 | -8.615850e-47 |
| Msa0766100 | Msa1142280 | -0.839534 | 1.496414e-57 | -8.615850e-47 |
| Msa0772210 | Msa1142280 | 0.803524 | 3.345842e-49 | -8.615850e-47 |
| Msa0792170 | Msa1142280 | 0.808170 | 3.532130e-50 | -8.615850e-47 |
| Msa0792510 | Msa1142280 | 0.818598 | 1.803016e-52 | -8.615850e-47 |
| Msa0820670 | Msa1142280 | 0.825386 | 4.821946e-54 | -8.615850e-47 |
| Msa0837990 | Msa1142280 | 0.811126 | 8.183725e-51 | -8.615850e-47 |
| Msa0125230 | Msa1142280 | 0.817316 | 3.512454e-52 | -8.615850e-47 |
| Msa0162030 | Msa1142280 | 0.801280 | 9.699061e-49 | -8.615850e-47 |
| Msa0162050 | Msa1142280 | 0.806677 | 7.324299e-50 | -8.615850e-47 |
| Msa0163550 | Msa1142280 | 0.811963 | 5.381840e-51 | -8.615850e-47 |
| Msa0164360 | Msa1142280 | 0.815084 | 1.108177e-51 | -8.615850e-47 |
| Msa0168100 | Msa1142280 | 0.802550 | 5.320559e-49 | -8.615850e-47 |
| Msa0194570 | Msa1142280 | 0.820646 | 6.146308e-53 | -8.615850e-47 |
| Msa0227490 | Msa1142280 | 0.811187 | 7.938444e-51 | -8.615850e-47 |
| Msa0227500 | Msa1142280 | 0.811675 | 6.217851e-51 | -8.615850e-47 |
| Msa0371610 | Msa1142280 | 0.812696 | 3.723303e-51 | -8.615850e-47 |
| Msa0413740 | Msa1142280 | 0.808352 | 3.229972e-50 | -8.615850e-47 |
| Msa0418000 | Msa1142280 | 0.819478 | 1.137281e-52 | -8.615850e-47 |
| Msa0427050 | Msa1142280 | 0.817134 | 3.859741e-52 | -8.615850e-47 |
| Msa0458790 | Msa1142280 | 0.815129 | 1.083099e-51 | -8.615850e-47 |
| Msa0466100 | Msa1142280 | 0.804787 | 1.826435e-49 | -8.615850e-47 |
| Msa1008490 | Msa1142280 | 0.826620 | 2.454256e-54 | -8.615850e-47 |
| Msa1036390 | Msa1142280 | 0.805852 | 1.093020e-49 | -8.615850e-47 |
| Msa1038320 | Msa1142280 | 0.806023 | 1.005852e-49 | -8.615850e-47 |
| Msa1042890 | Msa1142280 | -0.812545 | 4.017843e-51 | -8.615850e-47 |
| Msa1098560 | Msa1142280 | 0.812211 | 4.752384e-51 | -8.615850e-47 |
| Msa1099030 | Msa1142280 | 0.800192 | 1.617396e-48 | -8.615850e-47 |
| Msa0269360 | Msa1142280 | 0.820503 | 6.627952e-53 | -8.615850e-47 |
| Msa0286790 | Msa1142280 | 0.812591 | 3.924824e-51 | -8.615850e-47 |
| Msa0296760 | Msa1142280 | 0.804355 | 2.248372e-49 | -8.615850e-47 |
| Msa0298940 | Msa1142280 | 0.821680 | 3.550152e-53 | -8.615850e-47 |
| Msa0298970 | Msa1142280 | 0.826716 | 2.328507e-54 | -8.615850e-47 |
| Msa0301180 | Msa1142280 | 0.830259 | 3.247839e-55 | -8.615850e-47 |
| Msa0320540 | Msa1142280 | 0.823066 | 1.692224e-53 | -8.615850e-47 |
| Msa0325470 | Msa1142280 | 0.814472 | 1.514507e-51 | -8.615850e-47 |
| Msa0342200 | Msa1142280 | 0.801171 | 1.021380e-48 | -8.615850e-47 |
| Msa1118140 | Msa1142280 | 0.801604 | 8.325952e-49 | -8.615850e-47 |
| Msa1129560 | Msa1142280 | 0.809019 | 2.326760e-50 | -8.615850e-47 |
| Msa1129720 | Msa1142280 | 0.804503 | 2.093477e-49 | -8.615850e-47 |
| Msa1142280 | Msa1157160 | 0.807952 | 3.929989e-50 | -8.615850e-47 |
| Msa1142280 | Msa1159360 | 0.803983 | 2.686236e-49 | -8.615850e-47 |
| Msa1142280 | Msa1201990 | 0.820821 | 5.600724e-53 | -8.615850e-47 |
| Msa1142280 | Msa1204120 | 0.807918 | 3.997719e-50 | -8.615850e-47 |
| Msa1142280 | Msa1208070 | 0.828365 | 9.363420e-55 | -8.615850e-47 |
| Msa1142280 | Msa1220230 | 0.815973 | 7.024795e-52 | -8.615850e-47 |
| Msa1142280 | Msa1221200 | -0.800497 | 1.402039e-48 | -8.615850e-47 |
| Msa1142280 | Msa1221570 | -0.805222 | 1.481332e-49 | -8.615850e-47 |
| Msa1142280 | Msa1226600 | 0.801809 | 7.558389e-49 | -8.615850e-47 |
| Msa1142280 | Msa1254770 | 0.857484 | 1.581616e-62 | -8.615850e-47 |
| Msa1142280 | Msa1254800 | 0.856554 | 2.973600e-62 | -8.615850e-47 |
| Msa1142280 | Msa1256280 | 0.811211 | 7.842158e-51 | -8.615850e-47 |
| Msa1142280 | Msa1265960 | 0.815835 | 7.539702e-52 | -8.615850e-47 |
| Msa1142280 | Msa1303720 | 0.801454 | 8.936583e-49 | -8.615850e-47 |
| Msa1142280 | Msa1303780 | 0.808485 | 3.026218e-50 | -8.615850e-47 |
| Msa1142280 | Msa1326000 | 0.803379 | 3.586174e-49 | -8.615850e-47 |
| Msa1142280 | Msa1329990 | 0.827226 | 1.758578e-54 | -8.615850e-47 |
| Msa1142280 | Msa1337190 | 0.802278 | 6.050939e-49 | -8.615850e-47 |
| Msa1142280 | Msa1352290 | 0.808030 | 3.783156e-50 | -8.615850e-47 |
| Msa1142280 | Msa1354040 | 0.808967 | 2.387217e-50 | -8.615850e-47 |
| Msa1142280 | Msa1355260 | 0.801920 | 7.171525e-49 | -8.615850e-47 |
| Msa1142280 | Msa1357170 | 0.820149 | 7.988888e-53 | -8.615850e-47 |
| Msa1142280 | Msa1363120 | 0.800234 | 1.586209e-48 | -8.615850e-47 |
| Msa1142280 | Msa1373950 | 0.811599 | 6.460543e-51 | -8.615850e-47 |
| Msa1142280 | Msa1418200 | 0.824488 | 7.855148e-54 | -8.615850e-47 |
| Msa1142280 | Msa1428420 | 0.814378 | 1.588396e-51 | -8.615850e-47 |
| Msa1142280 | Msa1431000 | 0.808894 | 2.475253e-50 | -8.615850e-47 |
| Msa1142280 | Msa1447560 | 0.815579 | 8.601191e-52 | -8.615850e-47 |
| Msa1142280 | Msa1456810 | 0.838613 | 2.591659e-57 | -8.615850e-47 |
| Msa1142280 | Msa1458920 | 0.800662 | 1.297546e-48 | -8.615850e-47 |
| Msa1142280 | Msa1464560 | 0.840890 | 6.619870e-58 | -8.615850e-47 |
| Msa0505390 | Msa1142280 | 0.806568 | 7.720661e-50 | -8.615850e-47 |
| Msa0524050 | Msa1142280 | 0.818278 | 2.130976e-52 | -8.615850e-47 |
| Msa0524090 | Msa1142280 | 0.824255 | 8.911455e-54 | -8.615850e-47 |
| Msa0524120 | Msa1142280 | 0.849332 | 3.460613e-60 | -8.615850e-47 |
| Msa0535450 | Msa1142280 | 0.825836 | 3.772585e-54 | -8.615850e-47 |
| Msa0540320 | Msa1142280 | 0.814360 | 1.603358e-51 | -8.615850e-47 |
| Msa0546380 | Msa1142280 | 0.801072 | 1.070074e-48 | -8.615850e-47 |
| Msa0553500 | Msa1142280 | 0.806232 | 9.090632e-50 | -8.615850e-47 |
| Msa0575250 | Msa1142280 | 0.808484 | 3.028369e-50 | -8.615850e-47 |
| Msa0576420 | Msa1142280 | 0.807280 | 5.459321e-50 | -8.615850e-47 |
| Msa0582110 | Msa1142280 | 0.824896 | 6.294988e-54 | -8.615850e-47 |
| Msa0596100 | Msa1142280 | 0.820843 | 5.535560e-53 | -8.615850e-47 |
| Msa0886980 | Msa1142280 | 0.805490 | 1.301555e-49 | -8.615850e-47 |
| Msa0907700 | Msa1142280 | 0.803895 | 2.801585e-49 | -8.615850e-47 |
| Msa0925160 | Msa1142280 | 0.800457 | 1.428088e-48 | -8.615850e-47 |
| Msa0951710 | Msa1142280 | 0.807608 | 4.651413e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142280 | MtrunA17_Chr7g0218861 | 100.000 | 103 | 0 | 0 | 1 | 103 | 860 | 962 | 1.53e-70 | 226 |
| Msa1142280 | MtrunA17_Chr1g0157251 | 53.750 | 80 | 35 | 1 | 1 | 78 | 335 | 414 | 9.71e-24 | 93.6 |
| Msa1142280 | MtrunA17_Chr1g0153391 | 44.554 | 101 | 50 | 2 | 1 | 100 | 325 | 420 | 1.08e-21 | 87.8 |
| Msa1142280 | MtrunA17_Chr1g0153421 | 40.594 | 101 | 54 | 3 | 1 | 100 | 123 | 218 | 1.96e-19 | 79.3 |
| Msa1142280 | MtrunA17_Chr8g0362571 | 39.000 | 100 | 56 | 3 | 1 | 100 | 814 | 908 | 1.19e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142280 | AT1G76130.2 | 48.039 | 102 | 45 | 2 | 1 | 100 | 316 | 411 | 2.42e-25 | 98.2 |
| Msa1142280 | AT1G76130.1 | 48.039 | 102 | 45 | 2 | 1 | 100 | 316 | 411 | 2.42e-25 | 98.2 |
| Msa1142280 | AT1G69830.1 | 41.584 | 101 | 52 | 4 | 1 | 100 | 790 | 884 | 4.71e-19 | 80.9 |
| Msa1142280 | AT4G25000.1 | 36.538 | 104 | 60 | 2 | 1 | 103 | 325 | 423 | 1.13e-16 | 73.9 |
Find 63 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGACCATTTCTATGATTT+TGG | 0.117174 | 7_4:+16445065 | Msa1142280:CDS |
| AATATATCTGATAAAGAAAA+TGG | 0.278536 | 7_4:-16445908 | None:intergenic |
| GTACCATTGCATATAATCTT+TGG | 0.278726 | 7_4:-16445751 | None:intergenic |
| AAGTAGATGCCATGAGGTTT+TGG | 0.312184 | 7_4:-16445860 | None:intergenic |
| AAGGATCAGATTACCAAGTT+TGG | 0.352065 | 7_4:+16445291 | Msa1142280:CDS |
| TCGAACCATGTCTACTGAAT+TGG | 0.354155 | 7_4:-16445333 | None:intergenic |
| TTCAATGTCACATTCATAGA+AGG | 0.355818 | 7_4:+16445369 | Msa1142280:three_prime_UTR |
| TGAAGCTTGGGCAGTTTGAT+TGG | 0.358239 | 7_4:+16445216 | Msa1142280:CDS |
| AATTTCAATTTGCTTATCAT+AGG | 0.361893 | 7_4:-16445497 | None:intergenic |
| TATTCTAAACTTACAGTTCC+AGG | 0.363570 | 7_4:-16444863 | None:intergenic |
| TCCAAACGGTTCTCCTTTGA+AGG | 0.370052 | 7_4:-16445242 | None:intergenic |
| CAATAAATGTTATATGTTGA+AGG | 0.371790 | 7_4:-16445451 | None:intergenic |
| ATCAGCTTATCTCGTGGAAA+TGG | 0.424430 | 7_4:-16444812 | None:intergenic |
| GGATGCCAAAATCATAGAAA+TGG | 0.425839 | 7_4:-16445070 | None:intergenic |
| GACAGACTTGTTATTTATAT+AGG | 0.434941 | 7_4:+16445725 | Msa1142280:three_prime_UTR |
| ATTATTGTCTCAACCAAACT+TGG | 0.441202 | 7_4:-16445304 | None:intergenic |
| TCCTTCAAAGGAGAACCGTT+TGG | 0.446239 | 7_4:+16445241 | Msa1142280:CDS |
| CAACATATAACATTTATTGA+AGG | 0.459420 | 7_4:+16445455 | Msa1142280:three_prime_UTR |
| TTGAGGCGCGGAGACGGGCT+GGG | 0.477610 | 7_4:+16445114 | Msa1142280:CDS |
| GTTGATTGAGGCGCGGAGAC+GGG | 0.481679 | 7_4:+16445109 | Msa1142280:CDS |
| ATTCACTAGTAATGAAGCTT+GGG | 0.489421 | 7_4:+16445204 | Msa1142280:CDS |
| GCATATATCTTGACTCATCC+TGG | 0.492383 | 7_4:+16444845 | Msa1142280:CDS |
| TCCACGAGATAAGCTGATGC+AGG | 0.495956 | 7_4:+16444817 | Msa1142280:exon |
| GATTCACTAGTAATGAAGCT+TGG | 0.508154 | 7_4:+16445203 | Msa1142280:CDS |
| ACTTATCTTCCCATGTGCAT+TGG | 0.513016 | 7_4:+16445593 | Msa1142280:three_prime_UTR |
| TTTGTTTCTGAGCCTTGCTA+CGG | 0.515252 | 7_4:-16445562 | None:intergenic |
| AATGAAGATGCCAATGCACA+TGG | 0.522007 | 7_4:-16445603 | None:intergenic |
| GACGGGCTGGGATCCATTGT+CGG | 0.524523 | 7_4:+16445126 | Msa1142280:CDS |
| AGTTGATTGAGGCGCGGAGA+CGG | 0.528023 | 7_4:+16445108 | Msa1142280:CDS |
| GAAATAATCTAATGTGATGT+TGG | 0.534236 | 7_4:-16445702 | None:intergenic |
| TCATGTGCCTACACTAGGAC+TGG | 0.534547 | 7_4:-16445653 | None:intergenic |
| TCAAAGGAGAACCGTTTGGA+AGG | 0.539858 | 7_4:+16445245 | Msa1142280:CDS |
| TCTGCCAGCTCCCTTCCAAA+CGG | 0.545037 | 7_4:-16445256 | None:intergenic |
| TCCTCTGTTTCACACAAGTC+CGG | 0.546175 | 7_4:-16445801 | None:intergenic |
| TCAACTCAGTTATTACATCA+TGG | 0.548542 | 7_4:-16445091 | None:intergenic |
| ATATACAATGCAAACAATGA+AGG | 0.556390 | 7_4:+16445161 | Msa1142280:CDS |
| TCTTGATAGAGCTCCGACAA+TGG | 0.559559 | 7_4:-16445139 | None:intergenic |
| AAATGGTCATAAAATATGAC+AGG | 0.559902 | 7_4:-16445053 | None:intergenic |
| GTTTGATTGGAATCCTTCAA+AGG | 0.562684 | 7_4:+16445229 | Msa1142280:CDS |
| CAAAGGAGAACCGTTTGGAA+GGG | 0.566471 | 7_4:+16445246 | Msa1142280:CDS |
| AATTTGACATTGCCGTAGCA+AGG | 0.576254 | 7_4:+16445550 | Msa1142280:three_prime_UTR |
| CCCTGCATCAGCTTATCTCG+TGG | 0.582462 | 7_4:-16444818 | None:intergenic |
| AGAACCGTTTGGAAGGGAGC+TGG | 0.583813 | 7_4:+16445252 | Msa1142280:CDS |
| TGATAAAGAAAATGGTAACA+AGG | 0.585113 | 7_4:-16445900 | None:intergenic |
| TAATGCCAATTCAGTAGACA+TGG | 0.586840 | 7_4:+16445328 | Msa1142280:three_prime_UTR |
| TGACCGTCTCCAAAACCTCA+TGG | 0.596166 | 7_4:+16445851 | Msa1142280:three_prime_UTR |
| TACTATCATGTGCCTACACT+AGG | 0.597031 | 7_4:-16445658 | None:intergenic |
| ATGTGTCTCAATATCTCTAG+AGG | 0.606337 | 7_4:+16445934 | Msa1142280:three_prime_UTR |
| GATAAAGAAAATGGTAACAA+GGG | 0.606440 | 7_4:-16445899 | None:intergenic |
| GAAGGATACGTAGCTCAAGT+TGG | 0.606714 | 7_4:+16445179 | Msa1142280:CDS |
| TCACAGAAAAGAGCCACAGT+TGG | 0.609312 | 7_4:-16445413 | None:intergenic |
| TGGCAGAAGTTCGTTGACAA+AGG | 0.613157 | 7_4:+16445272 | Msa1142280:CDS |
| TCACCAAAGATTATATGCAA+TGG | 0.614849 | 7_4:+16445748 | Msa1142280:three_prime_UTR |
| TGTAATAACTGAGTTGATTG+AGG | 0.624388 | 7_4:+16445097 | Msa1142280:CDS |
| CCACGAGATAAGCTGATGCA+GGG | 0.630564 | 7_4:+16444818 | Msa1142280:exon |
| ACCGGACTTGTGTGAAACAG+AGG | 0.633135 | 7_4:+16445800 | Msa1142280:three_prime_UTR |
| ATGAAGATGCCAATGCACAT+GGG | 0.663641 | 7_4:-16445602 | None:intergenic |
| TAGGACTGGAAATGTTCCCA+AGG | 0.670148 | 7_4:-16445639 | None:intergenic |
| GTAGGCACATGATAGTAGTG+TGG | 0.683368 | 7_4:+16445664 | Msa1142280:three_prime_UTR |
| AACATTTCCAGTCCTAGTGT+AGG | 0.686182 | 7_4:+16445646 | Msa1142280:three_prime_UTR |
| TATCTCGTGGAAATGGCCAG+TGG | 0.698058 | 7_4:-16444805 | None:intergenic |
| TAACTGAGTTGATTGAGGCG+CGG | 0.704575 | 7_4:+16445102 | Msa1142280:CDS |
| ATAGAAAAGTAGATGCCATG+AGG | 0.730071 | 7_4:-16445866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACAGTTTAATCATAA+AGG | - | chr7_4:16444959-16444978 | None:intergenic | 15.0% |
| !! | AATATATCTGATAAAGAAAA+TGG | - | chr7_4:16445911-16445930 | None:intergenic | 15.0% |
| !! | TAAATACAGTTTAATCATAA+AGG | - | chr7_4:16444959-16444978 | None:intergenic | 15.0% |
| !! | AATATATCTGATAAAGAAAA+TGG | - | chr7_4:16445911-16445930 | None:intergenic | 15.0% |
| !! | CAATAAATGTTATATGTTGA+AGG | - | chr7_4:16445454-16445473 | None:intergenic | 20.0% |
| !! | CAACATATAACATTTATTGA+AGG | + | chr7_4:16445455-16445474 | Msa1142280:three_prime_UTR | 20.0% |
| !!! | AATTTCAATTTGCTTATCAT+AGG | - | chr7_4:16445500-16445519 | None:intergenic | 20.0% |
| !! | ATTAAAAAGTTATGTACCTT+GGG | + | chr7_4:16445623-16445642 | Msa1142280:three_prime_UTR | 20.0% |
| !! | CAATAAATGTTATATGTTGA+AGG | - | chr7_4:16445454-16445473 | None:intergenic | 20.0% |
| !! | CAACATATAACATTTATTGA+AGG | + | chr7_4:16445455-16445474 | Msa1142280:three_prime_UTR | 20.0% |
| !!! | AATTTCAATTTGCTTATCAT+AGG | - | chr7_4:16445500-16445519 | None:intergenic | 20.0% |
| !! | ATTAAAAAGTTATGTACCTT+GGG | + | chr7_4:16445623-16445642 | Msa1142280:three_prime_UTR | 20.0% |
| ! | GATACACTCATTATTGTTTA+AGG | + | chr7_4:16444916-16444935 | Msa1142280:intron | 25.0% |
| ! | AACACAAAAACGTTAAACAA+GGG | - | chr7_4:16445019-16445038 | None:intergenic | 25.0% |
| ! | AAACACAAAAACGTTAAACA+AGG | - | chr7_4:16445020-16445039 | None:intergenic | 25.0% |
| ! | AAATGGTCATAAAATATGAC+AGG | - | chr7_4:16445056-16445075 | None:intergenic | 25.0% |
| !! | TATGACCATTTCTATGATTT+TGG | + | chr7_4:16445065-16445084 | Msa1142280:CDS | 25.0% |
| ! | ATATACAATGCAAACAATGA+AGG | + | chr7_4:16445161-16445180 | Msa1142280:CDS | 25.0% |
| ! | CATTAAAAAGTTATGTACCT+TGG | + | chr7_4:16445622-16445641 | Msa1142280:three_prime_UTR | 25.0% |
| ! | GAAATAATCTAATGTGATGT+TGG | - | chr7_4:16445705-16445724 | None:intergenic | 25.0% |
| !!! | GACAGACTTGTTATTTATAT+AGG | + | chr7_4:16445725-16445744 | Msa1142280:three_prime_UTR | 25.0% |
| ! | GATAAAGAAAATGGTAACAA+GGG | - | chr7_4:16445902-16445921 | None:intergenic | 25.0% |
| ! | TGATAAAGAAAATGGTAACA+AGG | - | chr7_4:16445903-16445922 | None:intergenic | 25.0% |
| ! | GATACACTCATTATTGTTTA+AGG | + | chr7_4:16444916-16444935 | Msa1142280:intron | 25.0% |
| ! | AACACAAAAACGTTAAACAA+GGG | - | chr7_4:16445019-16445038 | None:intergenic | 25.0% |
| ! | AAACACAAAAACGTTAAACA+AGG | - | chr7_4:16445020-16445039 | None:intergenic | 25.0% |
| ! | AAATGGTCATAAAATATGAC+AGG | - | chr7_4:16445056-16445075 | None:intergenic | 25.0% |
| !! | TATGACCATTTCTATGATTT+TGG | + | chr7_4:16445065-16445084 | Msa1142280:CDS | 25.0% |
| ! | ATATACAATGCAAACAATGA+AGG | + | chr7_4:16445161-16445180 | Msa1142280:CDS | 25.0% |
| ! | CATTAAAAAGTTATGTACCT+TGG | + | chr7_4:16445622-16445641 | Msa1142280:three_prime_UTR | 25.0% |
| ! | GAAATAATCTAATGTGATGT+TGG | - | chr7_4:16445705-16445724 | None:intergenic | 25.0% |
| !!! | GACAGACTTGTTATTTATAT+AGG | + | chr7_4:16445725-16445744 | Msa1142280:three_prime_UTR | 25.0% |
| ! | GATAAAGAAAATGGTAACAA+GGG | - | chr7_4:16445902-16445921 | None:intergenic | 25.0% |
| ! | TGATAAAGAAAATGGTAACA+AGG | - | chr7_4:16445903-16445922 | None:intergenic | 25.0% |
| TATTCTAAACTTACAGTTCC+AGG | - | chr7_4:16444866-16444885 | None:intergenic | 30.0% | |
| CAATAATGAGTGTATCAAGA+AGG | - | chr7_4:16444912-16444931 | None:intergenic | 30.0% | |
| ACACAAAAACGTTAAACAAG+GGG | - | chr7_4:16445018-16445037 | None:intergenic | 30.0% | |
| TCAACTCAGTTATTACATCA+TGG | - | chr7_4:16445094-16445113 | None:intergenic | 30.0% | |
| !! | TGTAATAACTGAGTTGATTG+AGG | + | chr7_4:16445097-16445116 | Msa1142280:CDS | 30.0% |
| ATTCACTAGTAATGAAGCTT+GGG | + | chr7_4:16445204-16445223 | Msa1142280:CDS | 30.0% | |
| ATTATTGTCTCAACCAAACT+TGG | - | chr7_4:16445307-16445326 | None:intergenic | 30.0% | |
| TTCAATGTCACATTCATAGA+AGG | + | chr7_4:16445369-16445388 | Msa1142280:three_prime_UTR | 30.0% | |
| TCACCAAAGATTATATGCAA+TGG | + | chr7_4:16445748-16445767 | Msa1142280:three_prime_UTR | 30.0% | |
| GTACCATTGCATATAATCTT+TGG | - | chr7_4:16445754-16445773 | None:intergenic | 30.0% | |
| TTCTCTGTGAAAAACTTTAC+CGG | + | chr7_4:16445782-16445801 | Msa1142280:three_prime_UTR | 30.0% | |
| CTGTAAAAATGTGCATTGTT+TGG | + | chr7_4:16445824-16445843 | Msa1142280:three_prime_UTR | 30.0% | |
| TATTCTAAACTTACAGTTCC+AGG | - | chr7_4:16444866-16444885 | None:intergenic | 30.0% | |
| CAATAATGAGTGTATCAAGA+AGG | - | chr7_4:16444912-16444931 | None:intergenic | 30.0% | |
| ACACAAAAACGTTAAACAAG+GGG | - | chr7_4:16445018-16445037 | None:intergenic | 30.0% | |
| TCAACTCAGTTATTACATCA+TGG | - | chr7_4:16445094-16445113 | None:intergenic | 30.0% | |
| !! | TGTAATAACTGAGTTGATTG+AGG | + | chr7_4:16445097-16445116 | Msa1142280:CDS | 30.0% |
| ATTCACTAGTAATGAAGCTT+GGG | + | chr7_4:16445204-16445223 | Msa1142280:CDS | 30.0% | |
| ATTATTGTCTCAACCAAACT+TGG | - | chr7_4:16445307-16445326 | None:intergenic | 30.0% | |
| TTCAATGTCACATTCATAGA+AGG | + | chr7_4:16445369-16445388 | Msa1142280:three_prime_UTR | 30.0% | |
| TCACCAAAGATTATATGCAA+TGG | + | chr7_4:16445748-16445767 | Msa1142280:three_prime_UTR | 30.0% | |
| GTACCATTGCATATAATCTT+TGG | - | chr7_4:16445754-16445773 | None:intergenic | 30.0% | |
| TTCTCTGTGAAAAACTTTAC+CGG | + | chr7_4:16445782-16445801 | Msa1142280:three_prime_UTR | 30.0% | |
| CTGTAAAAATGTGCATTGTT+TGG | + | chr7_4:16445824-16445843 | Msa1142280:three_prime_UTR | 30.0% | |
| GGATGCCAAAATCATAGAAA+TGG | - | chr7_4:16445073-16445092 | None:intergenic | 35.0% | |
| GATTCACTAGTAATGAAGCT+TGG | + | chr7_4:16445203-16445222 | Msa1142280:CDS | 35.0% | |
| GTTTGATTGGAATCCTTCAA+AGG | + | chr7_4:16445229-16445248 | Msa1142280:CDS | 35.0% | |
| AAGGATCAGATTACCAAGTT+TGG | + | chr7_4:16445291-16445310 | Msa1142280:CDS | 35.0% | |
| TAATGCCAATTCAGTAGACA+TGG | + | chr7_4:16445328-16445347 | Msa1142280:three_prime_UTR | 35.0% | |
| ! | ATCATTTTGTCATCCAACTG+TGG | + | chr7_4:16445400-16445419 | Msa1142280:three_prime_UTR | 35.0% |
| ATAGAAAAGTAGATGCCATG+AGG | - | chr7_4:16445869-16445888 | None:intergenic | 35.0% | |
| ATGTGTCTCAATATCTCTAG+AGG | + | chr7_4:16445934-16445953 | Msa1142280:three_prime_UTR | 35.0% | |
| GGATGCCAAAATCATAGAAA+TGG | - | chr7_4:16445073-16445092 | None:intergenic | 35.0% | |
| GATTCACTAGTAATGAAGCT+TGG | + | chr7_4:16445203-16445222 | Msa1142280:CDS | 35.0% | |
| GTTTGATTGGAATCCTTCAA+AGG | + | chr7_4:16445229-16445248 | Msa1142280:CDS | 35.0% | |
| AAGGATCAGATTACCAAGTT+TGG | + | chr7_4:16445291-16445310 | Msa1142280:CDS | 35.0% | |
| TAATGCCAATTCAGTAGACA+TGG | + | chr7_4:16445328-16445347 | Msa1142280:three_prime_UTR | 35.0% | |
| ! | ATCATTTTGTCATCCAACTG+TGG | + | chr7_4:16445400-16445419 | Msa1142280:three_prime_UTR | 35.0% |
| ATAGAAAAGTAGATGCCATG+AGG | - | chr7_4:16445869-16445888 | None:intergenic | 35.0% | |
| ATGTGTCTCAATATCTCTAG+AGG | + | chr7_4:16445934-16445953 | Msa1142280:three_prime_UTR | 35.0% | |
| ATCAGCTTATCTCGTGGAAA+TGG | - | chr7_4:16444815-16444834 | None:intergenic | 40.0% | |
| GCATATATCTTGACTCATCC+TGG | + | chr7_4:16444845-16444864 | Msa1142280:CDS | 40.0% | |
| !! | AGTTGGTTCGAAAAGTTGTG+AGG | - | chr7_4:16444988-16445007 | None:intergenic | 40.0% |
| ! | CACAACTTTTCGAACCAACT+AGG | + | chr7_4:16444988-16445007 | Msa1142280:intron | 40.0% |
| ! | ACTTTTCGAACCAACTAGGT+TGG | + | chr7_4:16444992-16445011 | Msa1142280:intron | 40.0% |
| TCGAACCATGTCTACTGAAT+TGG | - | chr7_4:16445336-16445355 | None:intergenic | 40.0% | |
| AATTTGACATTGCCGTAGCA+AGG | + | chr7_4:16445550-16445569 | Msa1142280:three_prime_UTR | 40.0% | |
| !! | TTTGTTTCTGAGCCTTGCTA+CGG | - | chr7_4:16445565-16445584 | None:intergenic | 40.0% |
| ACTTATCTTCCCATGTGCAT+TGG | + | chr7_4:16445593-16445612 | Msa1142280:three_prime_UTR | 40.0% | |
| ATGAAGATGCCAATGCACAT+GGG | - | chr7_4:16445605-16445624 | None:intergenic | 40.0% | |
| AATGAAGATGCCAATGCACA+TGG | - | chr7_4:16445606-16445625 | None:intergenic | 40.0% | |
| AACATTTCCAGTCCTAGTGT+AGG | + | chr7_4:16445646-16445665 | Msa1142280:three_prime_UTR | 40.0% | |
| TACTATCATGTGCCTACACT+AGG | - | chr7_4:16445661-16445680 | None:intergenic | 40.0% | |
| ! | AAGTAGATGCCATGAGGTTT+TGG | - | chr7_4:16445863-16445882 | None:intergenic | 40.0% |
| ATCAGCTTATCTCGTGGAAA+TGG | - | chr7_4:16444815-16444834 | None:intergenic | 40.0% | |
| GCATATATCTTGACTCATCC+TGG | + | chr7_4:16444845-16444864 | Msa1142280:CDS | 40.0% | |
| !! | AGTTGGTTCGAAAAGTTGTG+AGG | - | chr7_4:16444988-16445007 | None:intergenic | 40.0% |
| ! | CACAACTTTTCGAACCAACT+AGG | + | chr7_4:16444988-16445007 | Msa1142280:intron | 40.0% |
| ! | ACTTTTCGAACCAACTAGGT+TGG | + | chr7_4:16444992-16445011 | Msa1142280:intron | 40.0% |
| TCGAACCATGTCTACTGAAT+TGG | - | chr7_4:16445336-16445355 | None:intergenic | 40.0% | |
| AATTTGACATTGCCGTAGCA+AGG | + | chr7_4:16445550-16445569 | Msa1142280:three_prime_UTR | 40.0% | |
| !! | TTTGTTTCTGAGCCTTGCTA+CGG | - | chr7_4:16445565-16445584 | None:intergenic | 40.0% |
| ACTTATCTTCCCATGTGCAT+TGG | + | chr7_4:16445593-16445612 | Msa1142280:three_prime_UTR | 40.0% | |
| ATGAAGATGCCAATGCACAT+GGG | - | chr7_4:16445605-16445624 | None:intergenic | 40.0% | |
| AATGAAGATGCCAATGCACA+TGG | - | chr7_4:16445606-16445625 | None:intergenic | 40.0% | |
| AACATTTCCAGTCCTAGTGT+AGG | + | chr7_4:16445646-16445665 | Msa1142280:three_prime_UTR | 40.0% | |
| TACTATCATGTGCCTACACT+AGG | - | chr7_4:16445661-16445680 | None:intergenic | 40.0% | |
| ! | AAGTAGATGCCATGAGGTTT+TGG | - | chr7_4:16445863-16445882 | None:intergenic | 40.0% |
| !! | TAACTGAGTTGATTGAGGCG+CGG | + | chr7_4:16445102-16445121 | Msa1142280:CDS | 45.0% |
| TCTTGATAGAGCTCCGACAA+TGG | - | chr7_4:16445142-16445161 | None:intergenic | 45.0% | |
| GAAGGATACGTAGCTCAAGT+TGG | + | chr7_4:16445179-16445198 | Msa1142280:CDS | 45.0% | |
| TGAAGCTTGGGCAGTTTGAT+TGG | + | chr7_4:16445216-16445235 | Msa1142280:CDS | 45.0% | |
| TCCTTCAAAGGAGAACCGTT+TGG | + | chr7_4:16445241-16445260 | Msa1142280:CDS | 45.0% | |
| TCCAAACGGTTCTCCTTTGA+AGG | - | chr7_4:16445245-16445264 | None:intergenic | 45.0% | |
| TCAAAGGAGAACCGTTTGGA+AGG | + | chr7_4:16445245-16445264 | Msa1142280:CDS | 45.0% | |
| CAAAGGAGAACCGTTTGGAA+GGG | + | chr7_4:16445246-16445265 | Msa1142280:CDS | 45.0% | |
| TGGCAGAAGTTCGTTGACAA+AGG | + | chr7_4:16445272-16445291 | Msa1142280:CDS | 45.0% | |
| TCACAGAAAAGAGCCACAGT+TGG | - | chr7_4:16445416-16445435 | None:intergenic | 45.0% | |
| TAGGACTGGAAATGTTCCCA+AGG | - | chr7_4:16445642-16445661 | None:intergenic | 45.0% | |
| GTAGGCACATGATAGTAGTG+TGG | + | chr7_4:16445664-16445683 | Msa1142280:three_prime_UTR | 45.0% | |
| TCCTCTGTTTCACACAAGTC+CGG | - | chr7_4:16445804-16445823 | None:intergenic | 45.0% | |
| !!! | ATGCCATGAGGTTTTGGAGA+CGG | - | chr7_4:16445857-16445876 | None:intergenic | 45.0% |
| !! | TAACTGAGTTGATTGAGGCG+CGG | + | chr7_4:16445102-16445121 | Msa1142280:CDS | 45.0% |
| TCTTGATAGAGCTCCGACAA+TGG | - | chr7_4:16445142-16445161 | None:intergenic | 45.0% | |
| GAAGGATACGTAGCTCAAGT+TGG | + | chr7_4:16445179-16445198 | Msa1142280:CDS | 45.0% | |
| TGAAGCTTGGGCAGTTTGAT+TGG | + | chr7_4:16445216-16445235 | Msa1142280:CDS | 45.0% | |
| TCCTTCAAAGGAGAACCGTT+TGG | + | chr7_4:16445241-16445260 | Msa1142280:CDS | 45.0% | |
| TCCAAACGGTTCTCCTTTGA+AGG | - | chr7_4:16445245-16445264 | None:intergenic | 45.0% | |
| TCAAAGGAGAACCGTTTGGA+AGG | + | chr7_4:16445245-16445264 | Msa1142280:CDS | 45.0% | |
| CAAAGGAGAACCGTTTGGAA+GGG | + | chr7_4:16445246-16445265 | Msa1142280:CDS | 45.0% | |
| TGGCAGAAGTTCGTTGACAA+AGG | + | chr7_4:16445272-16445291 | Msa1142280:CDS | 45.0% | |
| TCACAGAAAAGAGCCACAGT+TGG | - | chr7_4:16445416-16445435 | None:intergenic | 45.0% | |
| TAGGACTGGAAATGTTCCCA+AGG | - | chr7_4:16445642-16445661 | None:intergenic | 45.0% | |
| GTAGGCACATGATAGTAGTG+TGG | + | chr7_4:16445664-16445683 | Msa1142280:three_prime_UTR | 45.0% | |
| TCCTCTGTTTCACACAAGTC+CGG | - | chr7_4:16445804-16445823 | None:intergenic | 45.0% | |
| !!! | ATGCCATGAGGTTTTGGAGA+CGG | - | chr7_4:16445857-16445876 | None:intergenic | 45.0% |
| TATCTCGTGGAAATGGCCAG+TGG | - | chr7_4:16444808-16444827 | None:intergenic | 50.0% | |
| TCCACGAGATAAGCTGATGC+AGG | + | chr7_4:16444817-16444836 | Msa1142280:exon | 50.0% | |
| CCACGAGATAAGCTGATGCA+GGG | + | chr7_4:16444818-16444837 | Msa1142280:exon | 50.0% | |
| AAACAAGGGGCCAACCTAGT+TGG | - | chr7_4:16445005-16445024 | None:intergenic | 50.0% | |
| TCATGTGCCTACACTAGGAC+TGG | - | chr7_4:16445656-16445675 | None:intergenic | 50.0% | |
| ACCGGACTTGTGTGAAACAG+AGG | + | chr7_4:16445800-16445819 | Msa1142280:three_prime_UTR | 50.0% | |
| !!! | ATGAGGTTTTGGAGACGGTC+AGG | - | chr7_4:16445852-16445871 | None:intergenic | 50.0% |
| TGACCGTCTCCAAAACCTCA+TGG | + | chr7_4:16445851-16445870 | Msa1142280:three_prime_UTR | 50.0% | |
| TATCTCGTGGAAATGGCCAG+TGG | - | chr7_4:16444808-16444827 | None:intergenic | 50.0% | |
| TCCACGAGATAAGCTGATGC+AGG | + | chr7_4:16444817-16444836 | Msa1142280:exon | 50.0% | |
| CCACGAGATAAGCTGATGCA+GGG | + | chr7_4:16444818-16444837 | Msa1142280:exon | 50.0% | |
| AAACAAGGGGCCAACCTAGT+TGG | - | chr7_4:16445005-16445024 | None:intergenic | 50.0% | |
| TCATGTGCCTACACTAGGAC+TGG | - | chr7_4:16445656-16445675 | None:intergenic | 50.0% | |
| ACCGGACTTGTGTGAAACAG+AGG | + | chr7_4:16445800-16445819 | Msa1142280:three_prime_UTR | 50.0% | |
| !!! | ATGAGGTTTTGGAGACGGTC+AGG | - | chr7_4:16445852-16445871 | None:intergenic | 50.0% |
| TGACCGTCTCCAAAACCTCA+TGG | + | chr7_4:16445851-16445870 | Msa1142280:three_prime_UTR | 50.0% | |
| CCCTGCATCAGCTTATCTCG+TGG | - | chr7_4:16444821-16444840 | None:intergenic | 55.0% | |
| AGTTGATTGAGGCGCGGAGA+CGG | + | chr7_4:16445108-16445127 | Msa1142280:CDS | 55.0% | |
| AGAACCGTTTGGAAGGGAGC+TGG | + | chr7_4:16445252-16445271 | Msa1142280:CDS | 55.0% | |
| TCTGCCAGCTCCCTTCCAAA+CGG | - | chr7_4:16445259-16445278 | None:intergenic | 55.0% | |
| CCCTGCATCAGCTTATCTCG+TGG | - | chr7_4:16444821-16444840 | None:intergenic | 55.0% | |
| AGTTGATTGAGGCGCGGAGA+CGG | + | chr7_4:16445108-16445127 | Msa1142280:CDS | 55.0% | |
| AGAACCGTTTGGAAGGGAGC+TGG | + | chr7_4:16445252-16445271 | Msa1142280:CDS | 55.0% | |
| TCTGCCAGCTCCCTTCCAAA+CGG | - | chr7_4:16445259-16445278 | None:intergenic | 55.0% | |
| GTTGATTGAGGCGCGGAGAC+GGG | + | chr7_4:16445109-16445128 | Msa1142280:CDS | 60.0% | |
| !! | GACGGGCTGGGATCCATTGT+CGG | + | chr7_4:16445126-16445145 | Msa1142280:CDS | 60.0% |
| GTTGATTGAGGCGCGGAGAC+GGG | + | chr7_4:16445109-16445128 | Msa1142280:CDS | 60.0% | |
| !! | GACGGGCTGGGATCCATTGT+CGG | + | chr7_4:16445126-16445145 | Msa1142280:CDS | 60.0% |
| ATTGAGGCGCGGAGACGGGC+TGG | + | chr7_4:16445113-16445132 | Msa1142280:CDS | 70.0% | |
| ! | TTGAGGCGCGGAGACGGGCT+GGG | + | chr7_4:16445114-16445133 | Msa1142280:CDS | 70.0% |
| ATTGAGGCGCGGAGACGGGC+TGG | + | chr7_4:16445113-16445132 | Msa1142280:CDS | 70.0% | |
| ! | TTGAGGCGCGGAGACGGGCT+GGG | + | chr7_4:16445114-16445133 | Msa1142280:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 16444800 | 16445978 | 16444800 | ID=Msa1142280;Name=Msa1142280 |
| chr7_4 | mRNA | 16444800 | 16445978 | 16444800 | ID=Msa1142280-mRNA-1;Parent=Msa1142280;Name=Msa1142280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=33|1|1|1|1|1|2|653|103 |
| chr7_4 | exon | 16444800 | 16444871 | 16444800 | ID=Msa1142280-mRNA-1:exon:3700;Parent=Msa1142280-mRNA-1 |
| chr7_4 | exon | 16445053 | 16445978 | 16445053 | ID=Msa1142280-mRNA-1:exon:3701;Parent=Msa1142280-mRNA-1 |
| chr7_4 | five_prime_UTR | 16444800 | 16444832 | 16444800 | ID=Msa1142280-mRNA-1:five_prime_utr;Parent=Msa1142280-mRNA-1 |
| chr7_4 | CDS | 16444833 | 16444871 | 16444833 | ID=Msa1142280-mRNA-1:cds;Parent=Msa1142280-mRNA-1 |
| chr7_4 | CDS | 16445053 | 16445325 | 16445053 | ID=Msa1142280-mRNA-1:cds;Parent=Msa1142280-mRNA-1 |
| chr7_4 | three_prime_UTR | 16445326 | 16445978 | 16445326 | ID=Msa1142280-mRNA-1:three_prime_utr;Parent=Msa1142280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
