AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444090 MtrunA17_Chr4g0073861 96.111 180 7 0 39 218 1 180 7.76e-116 328
Msa1444090 MtrunA17_Chr2g0305661 70.619 194 49 4 39 230 1 188 1.52e-89 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444090 AT4G30620.1 78.472 144 25 4 89 230 41 180 1.84e-73 221
Msa1444090 AT2G24020.1 76.761 142 27 3 92 230 44 182 1.03e-71 217
Msa1444090 AT2G24020.2 76.761 142 27 3 92 230 42 180 1.36e-71 216

Find 61 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATAGAGGACAGGAAAA+AGG 0.248586 tig0030658:-5592 None:intergenic
ATCACTCATCCTTTCCTTCA+TGG 0.264347 tig0030658:-5367 None:intergenic
TGTCCTCTATTACTTCCTTT+AGG 0.284905 tig0030658:+5601 Msa1444090:three_prime_UTR
TCAAGTGCAAGCGGTGTGTC+TGG 0.297629 tig0030658:-1683 None:intergenic
AGTGATCTTGCTCAGAGTTT+AGG 0.315621 tig0030658:+5384 Msa1444090:CDS
TAATGAAAGTGGTGATAATA+AGG 0.335244 tig0030658:+2456 Msa1444090:CDS
ACCGAGGCTGCTATGGAATT+AGG 0.336676 tig0030658:+4805 Msa1444090:CDS
TATTTGTCTTATACAATTCA+AGG 0.361108 tig0030658:+5662 Msa1444090:three_prime_UTR
TTACATAGAGATGATGATAA+AGG 0.366088 tig0030658:-1773 None:intergenic
GTTGCAGAAACTTTCACTTT+TGG 0.369999 tig0030658:+5211 Msa1444090:intron
GACACACCGCTTGCACTTGA+AGG 0.386873 tig0030658:+1686 Msa1444090:CDS
CTATGCAGAGCCGAGTTTGA+TGG 0.393847 tig0030658:+4428 Msa1444090:intron
TTCAGAGTCCACGCCCTCTT+CGG 0.417036 tig0030658:+2421 Msa1444090:CDS
ACAAATTACCGAGGCTGCTA+TGG 0.426700 tig0030658:+4798 Msa1444090:CDS
TACATAGAGATGATGATAAA+GGG 0.429444 tig0030658:-1772 None:intergenic
GTATCCGATTTGATTCTACT+TGG 0.436674 tig0030658:-4291 None:intergenic
TGTGTAGGGATCACTTGAAA+TGG 0.437913 tig0030658:+5545 Msa1444090:three_prime_UTR
TCTGGGTTTGAAGTTGAAGT+TGG 0.444250 tig0030658:-1665 None:intergenic
CTGTGAGGGTGAGTTAATAA+AGG 0.456581 tig0030658:+4454 Msa1444090:CDS
GAGATGATGATAAAGGGTTC+CGG 0.466489 tig0030658:-1766 None:intergenic
GTTGAAGTTGGAGTTGGAGT+TGG 0.467912 tig0030658:-1653 None:intergenic
CTTGTTTACTCAGTTGTGTA+GGG 0.470936 tig0030658:+5531 Msa1444090:three_prime_UTR
TCTTGTTTACTCAGTTGTGT+AGG 0.471274 tig0030658:+5530 Msa1444090:three_prime_UTR
TTTGGTCACAGAGGCTTACA+AGG 0.475320 tig0030658:+5229 Msa1444090:CDS
CAACCACTCAATGCTCAAAC+CGG 0.484679 tig0030658:+1747 Msa1444090:CDS
TCGGTAATTTGTGTTCGTAC+AGG 0.488513 tig0030658:-4787 None:intergenic
TGATTATAGGGCGGAATGCT+CGG 0.498257 tig0030658:+4211 Msa1444090:intron
AGACCTAAAGGAAGTAATAG+AGG 0.501377 tig0030658:-5604 None:intergenic
CAAGTGCAAGCGGTGTGTCT+GGG 0.502228 tig0030658:-1682 None:intergenic
TTAGGAATGCCACCAGGTCT+CGG 0.506708 tig0030658:+5402 Msa1444090:CDS
GCTTTCACAGTTTCTCTCAC+AGG 0.511069 tig0030658:+1713 Msa1444090:CDS
TTTGAAGTTGAAGTTGGAGT+TGG 0.511833 tig0030658:-1659 None:intergenic
ACCGCTTGCACTTGAAGGAA+TGG 0.518445 tig0030658:+1691 Msa1444090:CDS
TCCTAATTCCATAGCAGCCT+CGG 0.521629 tig0030658:-4806 None:intergenic
TCTGTTCGAGACTGTGAAGA+AGG 0.525704 tig0030658:+4255 Msa1444090:CDS
TTGTCCAAGTAGAATCAAAT+CGG 0.528710 tig0030658:+4287 Msa1444090:CDS
ATGCCACCAGGTCTCGGTGA+AGG 0.535474 tig0030658:+5408 Msa1444090:CDS
AAAAGGGGTGAGGGGAGTAG+AGG 0.543965 tig0030658:-5575 None:intergenic
GGCGGAATGCTCGGTCAGCT+CGG 0.544938 tig0030658:+4220 Msa1444090:CDS
TGCCACCAGGTCTCGGTGAA+GGG 0.550963 tig0030658:+5409 Msa1444090:CDS
GTGCTAACGTAGTTGATATG+AGG 0.552449 tig0030658:+2350 Msa1444090:CDS
CATATCAACTACGTTAGCAC+TGG 0.554883 tig0030658:-2347 None:intergenic
TTCAACCCTTCACCGAGACC+TGG 0.556038 tig0030658:-5414 None:intergenic
TGCACACCAGAAGAGTGTCC+AGG 0.557903 tig0030658:+5253 Msa1444090:CDS
TAAAGGAAGTAATAGAGGAC+AGG 0.559751 tig0030658:-5599 None:intergenic
TTGATATGAGGTTAGTATCC+CGG 0.570131 tig0030658:+2362 Msa1444090:CDS
GACTGTGAAGAAGGCGCAAG+CGG 0.577851 tig0030658:+4264 Msa1444090:CDS
GGGATCACTTGAAATGGAGA+TGG 0.579296 tig0030658:+5551 Msa1444090:three_prime_UTR
AGAGTCCACGCCCTCTTCGG+AGG 0.582564 tig0030658:+2424 Msa1444090:CDS
GCCATTCCTTCAAGTGCAAG+CGG 0.589519 tig0030658:-1692 None:intergenic
CTCACAGTAACCATCAAACT+CGG 0.600828 tig0030658:-4438 None:intergenic
GTTCCGGTTTGAGCATTGAG+TGG 0.601986 tig0030658:-1750 None:intergenic
GGTTGAAGTGATGACAGAGA+AGG 0.611077 tig0030658:+5430 Msa1444090:exon
TTGAGCATTGAGTGGTTGCG+TGG 0.613680 tig0030658:-1742 None:intergenic
CAGAGTTTAGGAATGCCACC+AGG 0.628036 tig0030658:+5396 Msa1444090:CDS
GAGTTTGATGGTTACTGTGA+GGG 0.628368 tig0030658:+4440 Msa1444090:CDS
AACCCTTCACCGAGACCTGG+TGG 0.649082 tig0030658:-5411 None:intergenic
GAAGTGATGACAGAGAAGGA+TGG 0.670547 tig0030658:+5434 Msa1444090:exon
CGAGTTTGATGGTTACTGTG+AGG 0.677449 tig0030658:+4439 Msa1444090:CDS
ATGAGGTTAGTATCCCGGCG+TGG 0.743978 tig0030658:+2367 Msa1444090:CDS
TGTACGAACACAAATTACCG+AGG 0.748644 tig0030658:+4789 Msa1444090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTGACATAAACTA+AGG - tig0030658:1875-1894 None:intergenic 15.0%
!!! TAATTTGTAATTACACAAAT+GGG - tig0030658:2966-2985 None:intergenic 15.0%
!!! ATAATTTGTAATTACACAAA+TGG - tig0030658:2967-2986 None:intergenic 15.0%
!! AAAATAAAATAAATGAACAC+AGG - tig0030658:3485-3504 None:intergenic 15.0%
!!! ACAAATTTTATTCAATGTAA+GGG - tig0030658:3546-3565 None:intergenic 15.0%
!! TTGAATAAAATTTGTGAAAT+AGG + tig0030658:3551-3570 Msa1444090:intron 15.0%
!! TACCAAATTAATTTATACAT+CGG + tig0030658:3595-3614 Msa1444090:intron 15.0%
!!! AAGAAAATCACTTTTATATT+TGG + tig0030658:4023-4042 Msa1444090:intron 15.0%
!!! AGAAAATCACTTTTATATTT+GGG + tig0030658:4024-4043 Msa1444090:intron 15.0%
!! ATATTCATAATAATTATTGG+TGG + tig0030658:4178-4197 Msa1444090:intron 15.0%
!! TATTCATAATAATTATTGGT+GGG + tig0030658:4179-4198 Msa1444090:intron 15.0%
!!! GTAAATTATTTGATCTTTTT+AGG + tig0030658:5004-5023 Msa1444090:intron 15.0%
!!! GTAAATTATTTGATCTTTTT+AGG + tig0030658:5004-5023 Msa1444090:intron 15.0%
!!! CTTTTTCAATAATCTAAATA+TGG + tig0030658:5152-5171 Msa1444090:intron 15.0%
!! ATTTGATATTTAAACATCTT+TGG + tig0030658:5188-5207 Msa1444090:intron 15.0%
!! TTTGATATTTAAACATCTTT+GGG + tig0030658:5189-5208 Msa1444090:intron 15.0%
!! AATAAAAATATAAGACCTAA+AGG - tig0030658:5619-5638 None:intergenic 15.0%
!!! TTATTTTTTTTGAGCAATTT+AGG + tig0030658:5634-5653 Msa1444090:intron 15.0%
!!! AAATAAAAGTGCAAAATTCA+AGG - tig0030658:1911-1930 None:intergenic 20.0%
!!! TAGTTTGATTTTCTGATTTT+TGG + tig0030658:2165-2184 Msa1444090:intron 20.0%
!!! TCATTTATTTTATTTTCTCG+TGG + tig0030658:3489-3508 Msa1444090:intron 20.0%
!!! CATTTATTTTATTTTCTCGT+GGG + tig0030658:3490-3509 Msa1444090:intron 20.0%
!!! CACAAATTTTATTCAATGTA+AGG - tig0030658:3547-3566 None:intergenic 20.0%
!!! ATAAATTAATTTGGTACACA+TGG - tig0030658:3591-3610 None:intergenic 20.0%
!! AACCGATGTATAAATTAATT+TGG - tig0030658:3600-3619 None:intergenic 20.0%
!!! GTTTTATAAAGGTCTTAATT+AGG + tig0030658:3827-3846 Msa1444090:intron 20.0%
!!! AGTGATTTTCTTTTTTGTAT+TGG - tig0030658:4015-4034 None:intergenic 20.0%
!!! TTTTATATTTGGGAAAATGT+TGG + tig0030658:4034-4053 Msa1444090:intron 20.0%
!!! CAATTTTTAATTTGATGGAT+TGG - tig0030658:4110-4129 None:intergenic 20.0%
!! TCCATCAAATTAAAAATTGT+TGG + tig0030658:4111-4130 Msa1444090:intron 20.0%
!!! TCCAACAATTTTTAATTTGA+TGG - tig0030658:4115-4134 None:intergenic 20.0%
!! ATAATATAATAGATCTGCAA+TGG + tig0030658:4630-4649 Msa1444090:intron 20.0%
!!! TTTGATTAGGTTTAATTTTC+AGG + tig0030658:4741-4760 Msa1444090:intron 20.0%
!! TAATAGCTATACTATGATTT+AGG + tig0030658:4936-4955 Msa1444090:intron 20.0%
!!! TTTAGGATTAGACTTTTATA+AGG + tig0030658:4953-4972 Msa1444090:intron 20.0%
!! TTTATAAGGTGAACAAAAAT+AGG + tig0030658:4967-4986 Msa1444090:intron 20.0%
!! TTTATAAGGTGAACAAAAAT+AGG + tig0030658:4967-4986 Msa1444090:intron 20.0%
!! TATTTGTCTTATACAATTCA+AGG + tig0030658:5662-5681 Msa1444090:three_prime_UTR 20.0%
! TACATAGAGATGATGATAAA+GGG - tig0030658:1775-1794 None:intergenic 25.0%
! TTACATAGAGATGATGATAA+AGG - tig0030658:1776-1795 None:intergenic 25.0%
! AATGAAATTAAAGTGCGTAA+TGG - tig0030658:1843-1862 None:intergenic 25.0%
! GCAAAATTCAAGGTTTAAAT+TGG - tig0030658:1901-1920 None:intergenic 25.0%
!!! AAGTTTATTTTCCAACGATA+CGG - tig0030658:1944-1963 None:intergenic 25.0%
!! ATTTTGTTAGTTGAATTCCT+TGG + tig0030658:2007-2026 Msa1444090:intron 25.0%
! TTGAAACATTCAAATACCAT+GGG - tig0030658:2076-2095 None:intergenic 25.0%
!! TTTGAAACATTCAAATACCA+TGG - tig0030658:2077-2096 None:intergenic 25.0%
! TCAGAAAATCAAACTAACTA+GGG - tig0030658:2161-2180 None:intergenic 25.0%
! ATCAGAAAATCAAACTAACT+AGG - tig0030658:2162-2181 None:intergenic 25.0%
!!! GTTGTTGACTTTAATTCTAT+AGG + tig0030658:2313-2332 Msa1444090:intron 25.0%
! GGAAAAAAAGATAATGAAAG+TGG + tig0030658:2445-2464 Msa1444090:CDS 25.0%
! TAATGAAAGTGGTGATAATA+AGG + tig0030658:2456-2475 Msa1444090:CDS 25.0%
! TGCATAAGTGACAATTATTA+AGG + tig0030658:2593-2612 Msa1444090:intron 25.0%
! ATGCTTTCATCAAAGAAAAA+TGG - tig0030658:2638-2657 None:intergenic 25.0%
! TTATAAAAAACCTCTTCTAC+AGG + tig0030658:2747-2766 Msa1444090:intron 25.0%
! TCTTAAAATGCATCTTTGTA+AGG - tig0030658:2848-2867 None:intergenic 25.0%
!! TTTAACATTACGAAGTATCA+TGG - tig0030658:2937-2956 None:intergenic 25.0%
! GACATGTAAATTATGTAGTA+AGG + tig0030658:3266-3285 Msa1444090:intron 25.0%
!! GATTCTCTTATAGTTTTTCT+TGG - tig0030658:3340-3359 None:intergenic 25.0%
!! TAATGAGTTGGATAGAAATA+TGG + tig0030658:3381-3400 Msa1444090:intron 25.0%
! GAAAACTACAAAAGTTTAAG+CGG - tig0030658:3760-3779 None:intergenic 25.0%
!! ATGCACAACATGTTTTATAA+AGG + tig0030658:3816-3835 Msa1444090:intron 25.0%
!!! TGTATTGGACTTTTTAAAGA+GGG - tig0030658:4000-4019 None:intergenic 25.0%
!!! TTGTATTGGACTTTTTAAAG+AGG - tig0030658:4001-4020 None:intergenic 25.0%
!!! TGGGTTTGTTAATTGATTAT+AGG + tig0030658:4198-4217 Msa1444090:intron 25.0%
!!! GGGTTTGTTAATTGATTATA+GGG + tig0030658:4199-4218 Msa1444090:intron 25.0%
! TTTGTTAATTGATTATAGGG+CGG + tig0030658:4202-4221 Msa1444090:intron 25.0%
!!! CTGTTTACTTCATTTTGATT+AGG + tig0030658:4728-4747 Msa1444090:intron 25.0%
! CTGCTTAAGGAAAATTTATA+AGG + tig0030658:5027-5046 Msa1444090:intron 25.0%
!! AATTTTTATGCACTGAATGT+TGG + tig0030658:5112-5131 Msa1444090:intron 25.0%
!! ATTTTTATGCACTGAATGTT+GGG + tig0030658:5113-5132 Msa1444090:intron 25.0%
! TCTAAATATGGTCTAGAAAT+TGG + tig0030658:5164-5183 Msa1444090:intron 25.0%
!!! CTTGAAAAGTTATTTTTACC+TGG - tig0030658:5274-5293 None:intergenic 25.0%
!!! GGTAAAAATAACTTTTCAAG+AGG + tig0030658:5274-5293 Msa1444090:intron 25.0%
! AACAAATCAACATACTACAA+AGG - tig0030658:5319-5338 None:intergenic 25.0%
!! TACTTCTTTTACTGTGATTA+TGG + tig0030658:5499-5518 Msa1444090:three_prime_UTR 25.0%
TCCTTGGTAAATTATCAGTT+TGG + tig0030658:2023-2042 Msa1444090:intron 30.0%
ACCAAACTGATAATTTACCA+AGG - tig0030658:2027-2046 None:intergenic 30.0%
ACTAAGGAAAAACACATTCA+CGG - tig0030658:2113-2132 None:intergenic 30.0%
! TGACATTACTTCACACATTT+TGG + tig0030658:2214-2233 Msa1444090:intron 30.0%
! GACATTACTTCACACATTTT+GGG + tig0030658:2215-2234 Msa1444090:intron 30.0%
! GATTAGATCCAACTTTTTGT+AGG - tig0030658:2393-2412 None:intergenic 30.0%
AATGAATGAATACTCAGACA+GGG + tig0030658:2516-2535 Msa1444090:intron 30.0%
AAGCAAACAGATAGCAAATA+TGG - tig0030658:2562-2581 None:intergenic 30.0%
AATGGCAATGAAAAAAGTCA+TGG - tig0030658:2620-2639 None:intergenic 30.0%
!! TTCTTTGATGAAAGCATTAC+AGG + tig0030658:2641-2660 Msa1444090:intron 30.0%
TTGTGAGAACTTCTCATATT+TGG + tig0030658:2808-2827 Msa1444090:intron 30.0%
ATCTGTTATAAGACTGCATT+AGG + tig0030658:2868-2887 Msa1444090:intron 30.0%
TTGAAAGGTTTCTATTGCTT+GGG - tig0030658:2910-2929 None:intergenic 30.0%
ATTGAAAGGTTTCTATTGCT+TGG - tig0030658:2911-2930 None:intergenic 30.0%
GTAATTACACAAATGGGAAA+AGG - tig0030658:2960-2979 None:intergenic 30.0%
!!! ACACTGTGAATTCAGTTTTT+TGG + tig0030658:3016-3035 Msa1444090:intron 30.0%
CGCTTAATTTATTTACGTGT+TGG - tig0030658:3090-3109 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG + tig0030658:3369-3388 Msa1444090:intron 30.0%
TGGTATATGATAGAGCATAA+TGG + tig0030658:3401-3420 Msa1444090:intron 30.0%
AGTACACAAATATTGTGAAC+TGG + tig0030658:3671-3690 Msa1444090:intron 30.0%
GTACACAAATATTGTGAACT+GGG + tig0030658:3672-3691 Msa1444090:intron 30.0%
! TAATGATTGAGTTTTCGCTT+CGG - tig0030658:3910-3929 None:intergenic 30.0%
ATATATCATCCAACTCAGAA+GGG - tig0030658:3946-3965 None:intergenic 30.0%
TTGTCCAAGTAGAATCAAAT+CGG + tig0030658:4287-4306 Msa1444090:CDS 30.0%
TGTGATTAACTCGTATAACT+TGG - tig0030658:4382-4401 None:intergenic 30.0%
! TTTTCTCACATAAGCATGAA+AGG - tig0030658:4530-4549 None:intergenic 30.0%
AAAATGTTAGAGAAGAACCT+CGG + tig0030658:4554-4573 Msa1444090:intron 30.0%
AAACCAAGAAATGGGTAATA+TGG - tig0030658:4699-4718 None:intergenic 30.0%
TGAAAGTGAAACCAAGAAAT+GGG - tig0030658:4707-4726 None:intergenic 30.0%
ATGAAAGTGAAACCAAGAAA+TGG - tig0030658:4708-4727 None:intergenic 30.0%
CTATTAGTCATCACTTATCA+CGG - tig0030658:4922-4941 None:intergenic 30.0%
! TTTTTATGCACTGAATGTTG+GGG + tig0030658:5114-5133 Msa1444090:intron 30.0%
! TTTGAAGTTGAAGTTGGAGT+TGG - tig0030658:1662-1681 None:intergenic 35.0%
TTACCCTTTGACATATAGCT+AGG + tig0030658:1962-1981 Msa1444090:intron 35.0%
TACCCTTTGACATATAGCTA+GGG + tig0030658:1963-1982 Msa1444090:intron 35.0%
ACTAGGGAAAAACACATTCT+AGG - tig0030658:2145-2164 None:intergenic 35.0%
TGTGTGAAGTAATGTCAGTA+GGG - tig0030658:2211-2230 None:intergenic 35.0%
ATGTGTGAAGTAATGTCAGT+AGG - tig0030658:2212-2231 None:intergenic 35.0%
TTGATATGAGGTTAGTATCC+CGG + tig0030658:2362-2381 Msa1444090:CDS 35.0%
!!! ATCTTTTTTTCCTCCGAAGA+GGG - tig0030658:2437-2456 None:intergenic 35.0%
!!! TATCTTTTTTTCCTCCGAAG+AGG - tig0030658:2438-2457 None:intergenic 35.0%
ATGGAAAAAGAAAGCTGAGA+TGG - tig0030658:2486-2505 None:intergenic 35.0%
! TCATTCATTCGTAGCATTGA+TGG - tig0030658:2505-2524 None:intergenic 35.0%
GAATGAATGAATACTCAGAC+AGG + tig0030658:2515-2534 Msa1444090:intron 35.0%
AATGAGATGAAGATCGAACA+AGG - tig0030658:2679-2698 None:intergenic 35.0%
!! AACTTCTCATATTTGGTGTG+TGG + tig0030658:2815-2834 Msa1444090:intron 35.0%
GTTATAAGACTGCATTAGGT+AGG + tig0030658:2872-2891 Msa1444090:intron 35.0%
!! AAGTATCATGGTGGATTGAA+AGG - tig0030658:2925-2944 None:intergenic 35.0%
! AACATTACGAAGTATCATGG+TGG - tig0030658:2934-2953 None:intergenic 35.0%
TAATATCCACCTTCAATGCT+AGG + tig0030658:2989-3008 Msa1444090:intron 35.0%
! AGTGTAATTCCTAGCATTGA+AGG - tig0030658:3001-3020 None:intergenic 35.0%
CATGTTATCCTTTGTTCGTA+TGG + tig0030658:3040-3059 Msa1444090:intron 35.0%
AACAACATTAGAGAGAGAGT+TGG + tig0030658:3178-3197 Msa1444090:intron 35.0%
ACAACATTAGAGAGAGAGTT+GGG + tig0030658:3179-3198 Msa1444090:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + tig0030658:3204-3223 Msa1444090:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + tig0030658:3207-3226 Msa1444090:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - tig0030658:3211-3230 None:intergenic 35.0%
AAACTAGACTTAGGTGGTTT+GGG + tig0030658:3230-3249 Msa1444090:intron 35.0%
AGTAAGGAGAATAGATCAGA+TGG + tig0030658:3282-3301 Msa1444090:intron 35.0%
GAGAGTAGTCAAATTACTAG+AGG + tig0030658:3304-3323 Msa1444090:intron 35.0%
TATTCCTCAAACAAGTCACA+AGG + tig0030658:3619-3638 Msa1444090:intron 35.0%
TATTGTGAACTGGGTAAAAG+AGG + tig0030658:3681-3700 Msa1444090:intron 35.0%
ATTGATCCATGACAAACCTT+CGG + tig0030658:3865-3884 Msa1444090:intron 35.0%
TATATCATCCAACTCAGAAG+GGG - tig0030658:3945-3964 None:intergenic 35.0%
CATATATCATCCAACTCAGA+AGG - tig0030658:3947-3966 None:intergenic 35.0%
! GTATCCGATTTGATTCTACT+TGG - tig0030658:4294-4313 None:intergenic 35.0%
GTACCATATTACCCATTTCT+TGG + tig0030658:4693-4712 Msa1444090:intron 35.0%
!!! AATTTTCAGGTGACACTATC+AGG + tig0030658:4754-4773 Msa1444090:intron 35.0%
!!! ATTTTCAGGTGACACTATCA+GGG + tig0030658:4755-4774 Msa1444090:intron 35.0%
GCTATTAGATACAATCTGAC+AGG - tig0030658:4884-4903 None:intergenic 35.0%
!! TGATCTTTTTAGGCTGCTTA+AGG + tig0030658:5014-5033 Msa1444090:intron 35.0%
!! TGATCTTTTTAGGCTGCTTA+AGG + tig0030658:5014-5033 Msa1444090:intron 35.0%
! GTTGCAGAAACTTTCACTTT+TGG + tig0030658:5211-5230 Msa1444090:intron 35.0%
!! ATGCTGTTGCTTATGTTTTC+AGG + tig0030658:5344-5363 Msa1444090:intron 35.0%
!!! TAGTTTTGTATGCGAAATCG+AGG - tig0030658:5462-5481 None:intergenic 35.0%
! TCTTGTTTACTCAGTTGTGT+AGG + tig0030658:5530-5549 Msa1444090:three_prime_UTR 35.0%
CTTGTTTACTCAGTTGTGTA+GGG + tig0030658:5531-5550 Msa1444090:three_prime_UTR 35.0%
TAATAGAGGACAGGAAAAAG+GGG - tig0030658:5593-5612 None:intergenic 35.0%
GTAATAGAGGACAGGAAAAA+GGG - tig0030658:5594-5613 None:intergenic 35.0%
AGTAATAGAGGACAGGAAAA+AGG - tig0030658:5595-5614 None:intergenic 35.0%
TAAAGGAAGTAATAGAGGAC+AGG - tig0030658:5602-5621 None:intergenic 35.0%
TGTCCTCTATTACTTCCTTT+AGG + tig0030658:5601-5620 Msa1444090:three_prime_UTR 35.0%
AGACCTAAAGGAAGTAATAG+AGG - tig0030658:5607-5626 None:intergenic 35.0%
! TCTGGGTTTGAAGTTGAAGT+TGG - tig0030658:1668-1687 None:intergenic 40.0%
GAGATGATGATAAAGGGTTC+CGG - tig0030658:1769-1788 None:intergenic 40.0%
AGCCCTAGCTATATGTCAAA+GGG - tig0030658:1968-1987 None:intergenic 40.0%
TAGCCCTAGCTATATGTCAA+AGG - tig0030658:1969-1988 None:intergenic 40.0%
! GGGAAAAACACATTCTAGGA+TGG - tig0030658:2141-2160 None:intergenic 40.0%
AGTAATGTCAGTAGGGACTA+TGG - tig0030658:2204-2223 None:intergenic 40.0%
CATATCAACTACGTTAGCAC+TGG - tig0030658:2350-2369 None:intergenic 40.0%
! GTGCTAACGTAGTTGATATG+AGG + tig0030658:2350-2369 Msa1444090:CDS 40.0%
AAAGAACACTCCTGTAGAAG+AGG - tig0030658:2760-2779 None:intergenic 40.0%
! GTAATTCCTAGCATTGAAGG+TGG - tig0030658:2998-3017 None:intergenic 40.0%
ACTCTGTTCCATACGAACAA+AGG - tig0030658:3051-3070 None:intergenic 40.0%
! TTCGTATGGAACAGAGTGTT+GGG + tig0030658:3054-3073 Msa1444090:intron 40.0%
TAGAGATGAGGATGTTGCAT+TGG + tig0030658:3119-3138 Msa1444090:intron 40.0%
CAACATTAGAGAGAGAGTTG+GGG + tig0030658:3180-3199 Msa1444090:intron 40.0%
!! AGATGGTGGAAACTAGACTT+AGG + tig0030658:3221-3240 Msa1444090:intron 40.0%
GAAACTAGACTTAGGTGGTT+TGG + tig0030658:3229-3248 Msa1444090:intron 40.0%
!! AGTACCTTGTGACTTGTTTG+AGG - tig0030658:3626-3645 None:intergenic 40.0%
! TAAAAGAGGTTCTGGTAGTG+TGG + tig0030658:3695-3714 Msa1444090:intron 40.0%
CTTCTATGGATCAAGTCTCT+TGG - tig0030658:3735-3754 None:intergenic 40.0%
AAGTTTAAGCGGTGCTTCTA+TGG - tig0030658:3749-3768 None:intergenic 40.0%
! AGTTTTCGCTTCGGCATATA+AGG - tig0030658:3901-3920 None:intergenic 40.0%
GCACAATATCATGTGACACA+TGG + tig0030658:4071-4090 Msa1444090:intron 40.0%
CTCACAGTAACCATCAAACT+CGG - tig0030658:4441-4460 None:intergenic 40.0%
! GAGTTTGATGGTTACTGTGA+GGG + tig0030658:4440-4459 Msa1444090:CDS 40.0%
CTGTGAGGGTGAGTTAATAA+AGG + tig0030658:4454-4473 Msa1444090:CDS 40.0%
! TCGGTAATTTGTGTTCGTAC+AGG - tig0030658:4790-4809 None:intergenic 40.0%
TGTACGAACACAAATTACCG+AGG + tig0030658:4789-4808 Msa1444090:CDS 40.0%
!! ACTTTCACTTTTGGTCACAG+AGG + tig0030658:5220-5239 Msa1444090:CDS 40.0%
! TTTTTACCTGGACACTCTTC+TGG - tig0030658:5262-5281 None:intergenic 40.0%
!! CTTATGTTTTCAGGCCATGA+AGG + tig0030658:5353-5372 Msa1444090:intron 40.0%
ATCACTCATCCTTTCCTTCA+TGG - tig0030658:5370-5389 None:intergenic 40.0%
AGTGATCTTGCTCAGAGTTT+AGG + tig0030658:5384-5403 Msa1444090:CDS 40.0%
TGTGTAGGGATCACTTGAAA+TGG + tig0030658:5545-5564 Msa1444090:three_prime_UTR 40.0%
GTTGAAGTTGGAGTTGGAGT+TGG - tig0030658:1656-1675 None:intergenic 45.0%
GCTTTCACAGTTTCTCTCAC+AGG + tig0030658:1713-1732 Msa1444090:CDS 45.0%
CAACCACTCAATGCTCAAAC+CGG + tig0030658:1747-1766 Msa1444090:CDS 45.0%
TTCGTGTTTGACCGTATCGT+TGG + tig0030658:1930-1949 Msa1444090:intron 45.0%
!! TTCTAGGATGGCACTCACTA+AGG - tig0030658:2129-2148 None:intergenic 45.0%
GTTCGTATGGAACAGAGTGT+TGG + tig0030658:3053-3072 Msa1444090:intron 45.0%
AGGATGTTGCATTGGATGTG+TGG + tig0030658:3127-3146 Msa1444090:intron 45.0%
TGGTGGAAACTAGACTTAGG+TGG + tig0030658:3224-3243 Msa1444090:intron 45.0%
! AAGCCTTATCCCACTATGTG+GGG - tig0030658:3450-3469 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG - tig0030658:3451-3470 None:intergenic 45.0%
GAACTGGGTAAAAGAGGTTC+TGG + tig0030658:3687-3706 Msa1444090:intron 45.0%
GAAGAACCGAAGGTTTGTCA+TGG - tig0030658:3874-3893 None:intergenic 45.0%
ATAAGGCAGTGAAGAACCGA+AGG - tig0030658:3884-3903 None:intergenic 45.0%
TGATTATAGGGCGGAATGCT+CGG + tig0030658:4211-4230 Msa1444090:intron 45.0%
TCTGTTCGAGACTGTGAAGA+AGG + tig0030658:4255-4274 Msa1444090:CDS 45.0%
! CGAGTTTGATGGTTACTGTG+AGG + tig0030658:4439-4458 Msa1444090:CDS 45.0%
CACAACATTAGAGAGAGAGC+AGG - tig0030658:4491-4510 None:intergenic 45.0%
GCTCTCTCTCTAATGTTGTG+TGG + tig0030658:4491-4510 Msa1444090:intron 45.0%
CAACTCTAACTATTGTGCCG+AGG - tig0030658:4574-4593 None:intergenic 45.0%
ACAAATTACCGAGGCTGCTA+TGG + tig0030658:4798-4817 Msa1444090:CDS 45.0%
TCCTAATTCCATAGCAGCCT+CGG - tig0030658:4809-4828 None:intergenic 45.0%
TTTGGTCACAGAGGCTTACA+AGG + tig0030658:5229-5248 Msa1444090:CDS 45.0%
!! GTTTTCAGGCCATGAAGGAA+AGG + tig0030658:5358-5377 Msa1444090:intron 45.0%
GGTTGAAGTGATGACAGAGA+AGG + tig0030658:5430-5449 Msa1444090:exon 45.0%
GAAGTGATGACAGAGAAGGA+TGG + tig0030658:5434-5453 Msa1444090:exon 45.0%
GGGATCACTTGAAATGGAGA+TGG + tig0030658:5551-5570 Msa1444090:three_prime_UTR 45.0%
!! ATAATATTCATAATAATTAT+TGG + tig0030658:4175-4194 Msa1444090:intron 5.0%
!!! AATTATTGTTTTTTTTTTTT+TGG + tig0030658:4350-4369 Msa1444090:intron 5.0%
ACCGCTTGCACTTGAAGGAA+TGG + tig0030658:1691-1710 Msa1444090:CDS 50.0%
GCCATTCCTTCAAGTGCAAG+CGG - tig0030658:1695-1714 None:intergenic 50.0%
!! TTGAGCATTGAGTGGTTGCG+TGG - tig0030658:1745-1764 None:intergenic 50.0%
!! GTTCCGGTTTGAGCATTGAG+TGG - tig0030658:1753-1772 None:intergenic 50.0%
! AACTTTTTGTAGGCCACGCC+GGG - tig0030658:2383-2402 None:intergenic 50.0%
! CAACTTTTTGTAGGCCACGC+CGG - tig0030658:2384-2403 None:intergenic 50.0%
GCGACAGCGTAATAGAGATG+AGG + tig0030658:3107-3126 Msa1444090:intron 50.0%
CTTATCCCACTATGTGGGGT+CGG - tig0030658:3446-3465 None:intergenic 50.0%
! CCAAGCCTTATCCCACTATG+TGG - tig0030658:3452-3471 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG + tig0030658:3449-3468 Msa1444090:intron 50.0%
CAAGTCTCTTGGATGCAGAC+AGG - tig0030658:3724-3743 None:intergenic 50.0%
AGTTCTTGCCCCTTCTGAGT+TGG + tig0030658:3934-3953 Msa1444090:intron 50.0%
TCAAACTCGGCTCTGCATAG+TGG - tig0030658:4428-4447 None:intergenic 50.0%
CTATGCAGAGCCGAGTTTGA+TGG + tig0030658:4428-4447 Msa1444090:intron 50.0%
TGCAGACTCAAGGAAAGGGT+TGG - tig0030658:4658-4677 None:intergenic 50.0%
ACCCTTTCCTTGAGTCTGCA+AGG + tig0030658:4658-4677 Msa1444090:intron 50.0%
GCCTTGCAGACTCAAGGAAA+GGG - tig0030658:4662-4681 None:intergenic 50.0%
TGCCTTGCAGACTCAAGGAA+AGG - tig0030658:4663-4682 None:intergenic 50.0%
ATCTCTGCCTTGCAGACTCA+AGG - tig0030658:4668-4687 None:intergenic 50.0%
ACCGAGGCTGCTATGGAATT+AGG + tig0030658:4805-4824 Msa1444090:CDS 50.0%
CAGAGTTTAGGAATGCCACC+AGG + tig0030658:5396-5415 Msa1444090:CDS 50.0%
TTAGGAATGCCACCAGGTCT+CGG + tig0030658:5402-5421 Msa1444090:CDS 50.0%
AGGACAGGAAAAAGGGGTGA+GGG - tig0030658:5587-5606 None:intergenic 50.0%
CAAGTGCAAGCGGTGTGTCT+GGG - tig0030658:1685-1704 None:intergenic 55.0%
TCAAGTGCAAGCGGTGTGTC+TGG - tig0030658:1686-1705 None:intergenic 55.0%
GACACACCGCTTGCACTTGA+AGG + tig0030658:1686-1705 Msa1444090:CDS 55.0%
GTCAAGCGCAGAACAACCCA+TGG + tig0030658:2057-2076 Msa1444090:intron 55.0%
ATGAGGTTAGTATCCCGGCG+TGG + tig0030658:2367-2386 Msa1444090:CDS 55.0%
CGGCGTGGCCTACAAAAAGT+TGG + tig0030658:2382-2401 Msa1444090:CDS 55.0%
TTCAGAGTCCACGCCCTCTT+CGG + tig0030658:2421-2440 Msa1444090:CDS 55.0%
! TTTTTCCTCCGAAGAGGGCG+TGG - tig0030658:2432-2451 None:intergenic 55.0%
GGTCGGCTACATGGATCAGA+CGG - tig0030658:3429-3448 None:intergenic 55.0%
ACTATGTGGGGTCGGCTACA+TGG - tig0030658:3438-3457 None:intergenic 55.0%
ATGTAGCCGACCCCACATAG+TGG + tig0030658:3437-3456 Msa1444090:intron 55.0%
TGTAGCCGACCCCACATAGT+GGG + tig0030658:3438-3457 Msa1444090:intron 55.0%
! CGACCCCACATAGTGGGATA+AGG + tig0030658:3444-3463 Msa1444090:intron 55.0%
! GACTGTGAAGAAGGCGCAAG+CGG + tig0030658:4264-4283 Msa1444090:CDS 55.0%
!! TGCACACCAGAAGAGTGTCC+AGG + tig0030658:5253-5272 Msa1444090:CDS 55.0%
TTCAACCCTTCACCGAGACC+TGG - tig0030658:5417-5436 None:intergenic 55.0%
AAAAGGGGTGAGGGGAGTAG+AGG - tig0030658:5578-5597 None:intergenic 55.0%
GGACAGGAAAAAGGGGTGAG+GGG - tig0030658:5586-5605 None:intergenic 55.0%
GAGGACAGGAAAAAGGGGTG+AGG - tig0030658:5588-5607 None:intergenic 55.0%
ATGCCACCAGGTCTCGGTGA+AGG + tig0030658:5408-5427 Msa1444090:CDS 60.0%
TGCCACCAGGTCTCGGTGAA+GGG + tig0030658:5409-5428 Msa1444090:CDS 60.0%
AACCCTTCACCGAGACCTGG+TGG - tig0030658:5414-5433 None:intergenic 60.0%
AGAGTCCACGCCCTCTTCGG+AGG + tig0030658:2424-2443 Msa1444090:CDS 65.0%
GGCGGAATGCTCGGTCAGCT+CGG + tig0030658:4220-4239 Msa1444090:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0030658 gene 1596 5725 1596 ID=Msa1444090;Name=Msa1444090
tig0030658 mRNA 1596 5725 1596 ID=Msa1444090-mRNA-1;Parent=Msa1444090;Name=Msa1444090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|1|1|0.85|0.75|8|252|230
tig0030658 exon 1596 1791 1596 ID=Msa1444090-mRNA-1:exon:14314;Parent=Msa1444090-mRNA-1
tig0030658 exon 2335 2477 2335 ID=Msa1444090-mRNA-1:exon:14315;Parent=Msa1444090-mRNA-1
tig0030658 exon 4220 4329 4220 ID=Msa1444090-mRNA-1:exon:14316;Parent=Msa1444090-mRNA-1
tig0030658 exon 4436 4475 4436 ID=Msa1444090-mRNA-1:exon:14317;Parent=Msa1444090-mRNA-1
tig0030658 exon 4763 4834 4763 ID=Msa1444090-mRNA-1:exon:14318;Parent=Msa1444090-mRNA-1
tig0030658 exon 5218 5274 5218 ID=Msa1444090-mRNA-1:exon:14319;Parent=Msa1444090-mRNA-1
tig0030658 exon 5366 5622 5366 ID=Msa1444090-mRNA-1:exon:14320;Parent=Msa1444090-mRNA-1
tig0030658 exon 5656 5725 5656 ID=Msa1444090-mRNA-1:exon:14321;Parent=Msa1444090-mRNA-1
tig0030658 CDS 1596 1791 1596 ID=Msa1444090-mRNA-1:cds;Parent=Msa1444090-mRNA-1
tig0030658 CDS 2335 2477 2335 ID=Msa1444090-mRNA-1:cds;Parent=Msa1444090-mRNA-1
tig0030658 CDS 4220 4329 4220 ID=Msa1444090-mRNA-1:cds;Parent=Msa1444090-mRNA-1
tig0030658 CDS 4436 4475 4436 ID=Msa1444090-mRNA-1:cds;Parent=Msa1444090-mRNA-1
tig0030658 CDS 4763 4834 4763 ID=Msa1444090-mRNA-1:cds;Parent=Msa1444090-mRNA-1
tig0030658 CDS 5218 5274 5218 ID=Msa1444090-mRNA-1:cds;Parent=Msa1444090-mRNA-1
tig0030658 CDS 5366 5440 5366 ID=Msa1444090-mRNA-1:cds;Parent=Msa1444090-mRNA-1
tig0030658 three_prime_UTR 5441 5622 5441 ID=Msa1444090-mRNA-1:three_prime_utr;Parent=Msa1444090-mRNA-1
tig0030658 three_prime_UTR 5656 5725 5656 ID=Msa1444090-mRNA-1:three_prime_utr;Parent=Msa1444090-mRNA-1
Gene Sequence

>Msa1444090

AAAAAAAAAAATCTTGATATTATCTATCTGACAGAACTCACAGAAGTAACATCATCTCCAACTCCAACTCCAACTTCAACTTCAAACCCAGACACACCGCTTGCACTTGAAGGAATGGCTTTCACAGTTTCTCTCACAGGTCACATCCACGCAACCACTCAATGCTCAAACCGGAACCCTTTATCATCATCTCTATGTAAACTAAGCTCCAGTGCTAACGTAGTTGATATGAGGTTAGTATCCCGGCGTGGCCTACAAAAAGTTGGATCTAATCATAGAAATTTCAGAGTCCACGCCCTCTTCGGAGGAAAAAAAGATAATGAAAGTGGTGATAATAAGGGCGGAATGCTCGGTCAGCTCGGAAACATGCAAAATCTGTTCGAGACTGTGAAGAAGGCGCAAGCGGTTGTCCAAGTAGAATCAAATCGGATACAGAAAGAACTTGCTGCAGCCGAGTTTGATGGTTACTGTGAGGGTGAGTTAATAAAGGTGACACTATCAGGGAATCAGCAACCTGTACGAACACAAATTACCGAGGCTGCTATGGAATTAGGATCAGAAAAACTTTCACTTTTGGTCACAGAGGCTTACAAGGATGCACACCAGAAGAGTGTCCAGGCCATGAAGGAAAGGATGAGTGATCTTGCTCAGAGTTTAGGAATGCCACCAGGTCTCGGTGAAGGGTTGAAGTGA

Protein sequence

>Msa1444090

KKKNLDIIYLTELTEVTSSPTPTPTSTSNPDTPLALEGMAFTVSLTGHIHATTQCSNRNPLSSSLCKLSSSANVVDMRLVSRRGLQKVGSNHRNFRVHALFGGKKDNESGDNKGGMLGQLGNMQNLFETVKKAQAVVQVESNRIQKELAAAEFDGYCEGELIKVTLSGNQQPVRTQITEAAMELGSEKLSLLVTEAYKDAHQKSVQAMKERMSDLAQSLGMPPGLGEGLK*