Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675000 | XP_013455328.1 | 96.694 | 242 | 7 | 1 | 1 | 242 | 1 | 241 | 7.75e-173 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675000 | sp|O24464|KCY_PRUAR | 59.414 | 239 | 89 | 2 | 1 | 239 | 1 | 231 | 3.97e-101 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675000 | A0A072UI20 | 96.694 | 242 | 7 | 1 | 1 | 242 | 1 | 241 | 3.70e-173 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042280 | Msa0675000 | 0.804105 | 2.533914e-49 | -8.615850e-47 |
| Msa0090520 | Msa0675000 | 0.801024 | 1.094550e-48 | -8.615850e-47 |
| Msa0612720 | Msa0675000 | 0.805043 | 1.615050e-49 | -8.615850e-47 |
| Msa0615580 | Msa0675000 | 0.831230 | 1.877751e-55 | -8.615850e-47 |
| Msa0616870 | Msa0675000 | -0.803398 | 3.553186e-49 | -8.615850e-47 |
| Msa0631350 | Msa0675000 | 0.816149 | 6.415870e-52 | -8.615850e-47 |
| Msa0642970 | Msa0675000 | 0.801390 | 9.211339e-49 | -8.615850e-47 |
| Msa0669720 | Msa0675000 | 0.823982 | 1.032849e-53 | -8.615850e-47 |
| Msa0669760 | Msa0675000 | 0.814424 | 1.551372e-51 | -8.615850e-47 |
| Msa0675000 | Msa0800370 | 0.821378 | 4.167350e-53 | -8.615850e-47 |
| Msa0675000 | Msa0913240 | 0.807692 | 4.465389e-50 | -8.615850e-47 |
| Msa0675000 | Msa0944200 | 0.803817 | 2.909010e-49 | -8.615850e-47 |
| Msa0675000 | Msa0944610 | 0.827334 | 1.656444e-54 | -8.615850e-47 |
| Msa0675000 | Msa1104210 | 0.802681 | 4.998002e-49 | -8.615850e-47 |
| Msa0675000 | Msa1126830 | 0.806685 | 7.294633e-50 | -8.615850e-47 |
| Msa0675000 | Msa1131560 | 0.834216 | 3.406489e-56 | -8.615850e-47 |
| Msa0675000 | Msa1165780 | 0.830106 | 3.539452e-55 | -8.615850e-47 |
| Msa0675000 | Msa1165960 | 0.800564 | 1.358720e-48 | -8.615850e-47 |
| Msa0675000 | Msa1166870 | 0.800431 | 1.445947e-48 | -8.615850e-47 |
| Msa0675000 | Msa1202580 | 0.829762 | 4.293635e-55 | -8.615850e-47 |
| Msa0675000 | Msa1206270 | 0.805873 | 1.081818e-49 | -8.615850e-47 |
| Msa0675000 | Msa1211830 | 0.825153 | 5.476080e-54 | -8.615850e-47 |
| Msa0675000 | Msa1254730 | 0.803486 | 3.407410e-49 | -8.615850e-47 |
| Msa0675000 | Msa1264210 | 0.821580 | 3.743902e-53 | -8.615850e-47 |
| Msa0675000 | Msa1265590 | 0.825242 | 5.215903e-54 | -8.615850e-47 |
| Msa0675000 | Msa1275110 | 0.800703 | 1.272851e-48 | -8.615850e-47 |
| Msa0675000 | Msa1294820 | 0.806964 | 6.369311e-50 | -8.615850e-47 |
| Msa0675000 | Msa1296830 | 0.812378 | 4.369094e-51 | -8.615850e-47 |
| Msa0675000 | Msa1299700 | 0.804686 | 1.917769e-49 | -8.615850e-47 |
| Msa0675000 | Msa1302380 | 0.809541 | 1.798080e-50 | -8.615850e-47 |
| Msa0675000 | Msa1332220 | 0.800100 | 1.688849e-48 | -8.615850e-47 |
| Msa0675000 | Msa1332590 | 0.829887 | 4.003870e-55 | -8.615850e-47 |
| Msa0675000 | Msa1336560 | 0.819920 | 9.014094e-53 | -8.615850e-47 |
| Msa0675000 | Msa1351540 | 0.838486 | 2.795265e-57 | -8.615850e-47 |
| Msa0675000 | Msa1422810 | 0.816002 | 6.919764e-52 | -8.615850e-47 |
| Msa0675000 | Msa1433600 | 0.808392 | 3.167090e-50 | -8.615850e-47 |
| Msa0675000 | Msa1454450 | 0.825288 | 5.086493e-54 | -8.615850e-47 |
| Msa0675000 | Msa1454680 | 0.820128 | 8.079149e-53 | -8.615850e-47 |
| Msa0675000 | Msa1458090 | 0.821737 | 3.442928e-53 | -8.615850e-47 |
| Msa0183900 | Msa0675000 | 0.805749 | 1.148871e-49 | -8.615850e-47 |
| Msa0209500 | Msa0675000 | 0.804942 | 1.695336e-49 | -8.615850e-47 |
| Msa0231100 | Msa0675000 | 0.800912 | 1.153688e-48 | -8.615850e-47 |
| Msa0376690 | Msa0675000 | 0.802520 | 5.395678e-49 | -8.615850e-47 |
| Msa0385500 | Msa0675000 | 0.807440 | 5.048895e-50 | -8.615850e-47 |
| Msa0419720 | Msa0675000 | 0.810879 | 9.252510e-51 | -8.615850e-47 |
| Msa0423450 | Msa0675000 | -0.801916 | 7.183392e-49 | -8.615850e-47 |
| Msa0443390 | Msa0675000 | 0.809652 | 1.702179e-50 | -8.615850e-47 |
| Msa0450480 | Msa0675000 | 0.805407 | 1.355092e-49 | -8.615850e-47 |
| Msa0458060 | Msa0675000 | 0.800812 | 1.208945e-48 | -8.615850e-47 |
| Msa0469620 | Msa0675000 | -0.802155 | 6.415990e-49 | -8.615850e-47 |
| Msa0249580 | Msa0675000 | 0.821161 | 4.677899e-53 | -8.615850e-47 |
| Msa0257490 | Msa0675000 | 0.816366 | 5.739928e-52 | -8.615850e-47 |
| Msa0275360 | Msa0675000 | 0.812434 | 4.247349e-51 | -8.615850e-47 |
| Msa0281530 | Msa0675000 | 0.810030 | 1.411175e-50 | -8.615850e-47 |
| Msa0283420 | Msa0675000 | 0.809256 | 2.070275e-50 | -8.615850e-47 |
| Msa0296790 | Msa0675000 | 0.818703 | 1.706546e-52 | -8.615850e-47 |
| Msa0304590 | Msa0675000 | 0.807005 | 6.242830e-50 | -8.615850e-47 |
| Msa0304660 | Msa0675000 | 0.816946 | 4.253679e-52 | -8.615850e-47 |
| Msa0321690 | Msa0675000 | 0.805324 | 1.410123e-49 | -8.615850e-47 |
| Msa0331700 | Msa0675000 | 0.815786 | 7.734771e-52 | -8.615850e-47 |
| Msa0511770 | Msa0675000 | 0.809873 | 1.525420e-50 | -8.615850e-47 |
| Msa0534900 | Msa0675000 | 0.827902 | 1.210443e-54 | -8.615850e-47 |
| Msa0540550 | Msa0675000 | 0.941890 | 1.886414e-101 | -8.615850e-47 |
| Msa0542290 | Msa0675000 | 0.803355 | 3.627147e-49 | -8.615850e-47 |
| Msa0581110 | Msa0675000 | 0.804203 | 2.417399e-49 | -8.615850e-47 |
| Msa0588260 | Msa0675000 | 0.805137 | 1.543199e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675000 | MtrunA17_Chr4g0018221 | 96.694 | 242 | 7 | 1 | 1 | 242 | 1 | 241 | 7.13e-177 | 485 |
| Msa0675000 | MtrunA17_Chr5g0428971 | 87.190 | 242 | 7 | 2 | 1 | 242 | 1 | 218 | 3.59e-151 | 419 |
| Msa0675000 | MtrunA17_Chr8g0337051 | 58.421 | 190 | 79 | 0 | 52 | 241 | 18 | 207 | 3.18e-79 | 237 |
| Msa0675000 | MtrunA17_Chr4g0017231 | 35.766 | 137 | 78 | 4 | 45 | 178 | 82 | 211 | 4.97e-19 | 84.0 |
| Msa0675000 | MtrunA17_Chr2g0305051 | 24.107 | 224 | 140 | 5 | 45 | 241 | 62 | 282 | 1.15e-17 | 81.6 |
| Msa0675000 | MtrunA17_Chr1g0181801 | 24.883 | 213 | 115 | 4 | 61 | 230 | 117 | 327 | 7.96e-17 | 78.6 |
| Msa0675000 | MtrunA17_Chr4g0057771 | 27.143 | 210 | 120 | 4 | 59 | 235 | 33 | 242 | 3.21e-16 | 75.5 |
| Msa0675000 | MtrunA17_Chr7g0263541 | 23.214 | 224 | 127 | 3 | 50 | 230 | 31 | 252 | 3.66e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675000 | AT4G25280.1 | 67.513 | 197 | 64 | 0 | 43 | 239 | 41 | 237 | 1.25e-96 | 283 |
| Msa0675000 | AT4G25280.2 | 67.513 | 197 | 64 | 0 | 43 | 239 | 41 | 237 | 1.25e-96 | 283 |
| Msa0675000 | AT3G60180.1 | 59.358 | 187 | 76 | 0 | 50 | 236 | 16 | 202 | 5.39e-80 | 239 |
| Msa0675000 | AT3G60180.2 | 59.358 | 187 | 76 | 0 | 50 | 236 | 16 | 202 | 5.39e-80 | 239 |
| Msa0675000 | AT5G26667.3 | 61.111 | 180 | 70 | 0 | 56 | 235 | 15 | 194 | 8.26e-78 | 233 |
| Msa0675000 | AT5G26667.2 | 61.111 | 180 | 70 | 0 | 56 | 235 | 15 | 194 | 8.26e-78 | 233 |
| Msa0675000 | AT5G26667.4 | 61.111 | 180 | 70 | 0 | 56 | 235 | 15 | 194 | 8.26e-78 | 233 |
| Msa0675000 | AT5G26667.1 | 61.111 | 180 | 70 | 0 | 56 | 235 | 15 | 194 | 1.21e-77 | 233 |
| Msa0675000 | AT3G60961.1 | 58.647 | 133 | 51 | 1 | 108 | 236 | 2 | 134 | 1.64e-51 | 164 |
| Msa0675000 | AT5G47840.2 | 30.317 | 221 | 140 | 7 | 22 | 230 | 31 | 249 | 4.73e-25 | 100 |
| Msa0675000 | AT5G47840.1 | 34.375 | 160 | 100 | 4 | 22 | 178 | 31 | 188 | 6.65e-25 | 100 |
| Msa0675000 | AT5G63400.1 | 30.288 | 208 | 112 | 4 | 61 | 235 | 39 | 246 | 5.14e-21 | 89.0 |
| Msa0675000 | AT5G35170.2 | 25.962 | 208 | 124 | 5 | 58 | 238 | 82 | 286 | 1.12e-19 | 88.2 |
| Msa0675000 | AT5G35170.1 | 25.962 | 208 | 124 | 5 | 58 | 238 | 82 | 286 | 1.16e-19 | 87.8 |
| Msa0675000 | AT2G37250.1 | 25.652 | 230 | 124 | 5 | 36 | 221 | 32 | 258 | 1.66e-18 | 82.8 |
| Msa0675000 | AT5G50370.1 | 29.268 | 205 | 111 | 5 | 54 | 225 | 34 | 237 | 3.99e-17 | 78.2 |
| Msa0675000 | AT2G39270.1 | 25.381 | 197 | 102 | 3 | 61 | 214 | 70 | 264 | 5.21e-16 | 75.9 |
| Msa0675000 | AT5G63400.2 | 32.787 | 122 | 78 | 2 | 61 | 178 | 39 | 160 | 1.62e-12 | 64.7 |
| Msa0675000 | AT5G50370.2 | 27.684 | 177 | 95 | 4 | 61 | 204 | 40 | 216 | 4.50e-12 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCACCATCTCTTCTTC+AGG | 0.214393 | 4_4:-23102478 | None:intergenic |
| GAGCAAATCAGCCAGGAATT+TGG | 0.247846 | 4_4:-23103894 | None:intergenic |
| ATGCGGTTCTCCTCACTTCT+AGG | 0.250539 | 4_4:-23102119 | None:intergenic |
| TGGATCGCCTTTACACTTTC+AGG | 0.259735 | 4_4:+23099063 | Msa0675000:CDS |
| TCAAAACAGCGCGATGATTC+TGG | 0.264727 | 4_4:+23101992 | Msa0675000:intron |
| AATCGTAAGTTTCTTATTGA+TGG | 0.280210 | 4_4:+23102092 | Msa0675000:CDS |
| TTGTGAGAGCATCGTAAATT+TGG | 0.285319 | 4_4:+23103809 | Msa0675000:three_prime_UTR |
| ATGGTTTCCGACAGTGAATA+TGG | 0.306208 | 4_4:+23101896 | Msa0675000:CDS |
| TTGGTTCTAGCGAAAGGATT+TGG | 0.306697 | 4_4:+23104083 | Msa0675000:three_prime_UTR |
| TTACCTGTGTGATGTGAAAA+AGG | 0.308101 | 4_4:-23098914 | None:intergenic |
| TATAACCGAATCCATATGTT+TGG | 0.320695 | 4_4:-23100718 | None:intergenic |
| GCAAGAATTGTTGAAACATT+TGG | 0.322361 | 4_4:+23101833 | Msa0675000:CDS |
| TCGTAAATTTGGGTGAAGTA+TGG | 0.333501 | 4_4:+23103820 | Msa0675000:three_prime_UTR |
| CGCTAGAACCAACATATTGT+TGG | 0.364819 | 4_4:-23104072 | None:intergenic |
| CGTGATTTCTCCCAAACATA+TGG | 0.371968 | 4_4:+23100707 | Msa0675000:CDS |
| ATTTGATAATAACCTGATTA+CGG | 0.389843 | 4_4:-23102510 | None:intergenic |
| ATGAAATATTTGAGCAAGTT+CGG | 0.399297 | 4_4:+23103315 | Msa0675000:CDS |
| TGCCTTTAGTATCTTAAAGA+AGG | 0.401794 | 4_4:+23104174 | Msa0675000:three_prime_UTR |
| ACGGGTGCTGAGCCGTAATC+AGG | 0.406509 | 4_4:+23102498 | Msa0675000:CDS |
| TTCTCCCAAACATATGGATT+CGG | 0.410215 | 4_4:+23100713 | Msa0675000:CDS |
| TCAAAGAAAAGAACAAAATC+TGG | 0.410965 | 4_4:-23102451 | None:intergenic |
| CATTGCCATAGATTTATCTC+TGG | 0.430367 | 4_4:+23099043 | Msa0675000:CDS |
| GCGATCCAGAGATAAATCTA+TGG | 0.432864 | 4_4:-23099048 | None:intergenic |
| ATTCTAAGAGAGATGCAATA+TGG | 0.435899 | 4_4:+23102065 | Msa0675000:CDS |
| GAAACGTCTTAAAGTATTTG+AGG | 0.438315 | 4_4:+23102631 | Msa0675000:CDS |
| ATAACCGAATCCATATGTTT+GGG | 0.442781 | 4_4:-23100717 | None:intergenic |
| AATTCCTGGCTGATTTGCTC+TGG | 0.446154 | 4_4:+23103897 | Msa0675000:three_prime_UTR |
| AGCTACAAGATCCAAATTCC+TGG | 0.446239 | 4_4:+23103883 | Msa0675000:three_prime_UTR |
| TCCCTTCTTTAAGATACTAA+AGG | 0.456295 | 4_4:-23104176 | None:intergenic |
| GTTTCACCATCTCTTCTTCA+GGG | 0.464125 | 4_4:-23102477 | None:intergenic |
| ATCTACTGTTATTCCTGTCA+AGG | 0.473309 | 4_4:-23104005 | None:intergenic |
| TGAAGAAGAGATGGTGAAAC+GGG | 0.483819 | 4_4:+23102480 | Msa0675000:CDS |
| TGTGAGAGCATCGTAAATTT+GGG | 0.491439 | 4_4:+23103810 | Msa0675000:three_prime_UTR |
| GCCTTTAGTATCTTAAAGAA+GGG | 0.515319 | 4_4:+23104175 | Msa0675000:three_prime_UTR |
| GGATTTAAGCATCTGAGTGC+TGG | 0.521519 | 4_4:+23101854 | Msa0675000:CDS |
| AATCTGACAGTCACCGCTGA+TGG | 0.523930 | 4_4:-23102041 | None:intergenic |
| GTCGAATCGTAACCCTTGAC+AGG | 0.530453 | 4_4:+23103992 | Msa0675000:three_prime_UTR |
| TTACCGTAAAACTCATCCAC+TGG | 0.533946 | 4_4:+23103923 | Msa0675000:three_prime_UTR |
| TGCGGTTCTCCTCACTTCTA+GGG | 0.534418 | 4_4:-23102118 | None:intergenic |
| AGTTAATACCAACAATATGT+TGG | 0.536815 | 4_4:+23104064 | Msa0675000:three_prime_UTR |
| TGCATGAAAGCTGTGTGAAT+AGG | 0.540671 | 4_4:+23103782 | Msa0675000:exon |
| TGGTTTCCGACAGTGAATAT+GGG | 0.541266 | 4_4:+23101897 | Msa0675000:CDS |
| TATAGTACCTGAAAGTGTAA+AGG | 0.547370 | 4_4:-23099070 | None:intergenic |
| TCTACTGTTATTCCTGTCAA+GGG | 0.548709 | 4_4:-23104004 | None:intergenic |
| TTTGCATAATGATCAATCAC+AGG | 0.554235 | 4_4:-23102665 | None:intergenic |
| AATATGTTGGTTCTAGCGAA+AGG | 0.556726 | 4_4:+23104077 | Msa0675000:three_prime_UTR |
| TTTAAAGTGACTGGTTGTAA+CGG | 0.566306 | 4_4:+23103951 | Msa0675000:three_prime_UTR |
| TAGCTAACTAGAAGTTAACT+AGG | 0.567149 | 4_4:-23103865 | None:intergenic |
| AATTCAAGAAACAGAAAATG+TGG | 0.570280 | 4_4:+23098856 | Msa0675000:exon |
| ATCTCCGCAGATCAATGCTG+TGG | 0.571341 | 4_4:+23103283 | Msa0675000:intron |
| CTGAAGAAGAGATGGTGAAA+CGG | 0.581877 | 4_4:+23102479 | Msa0675000:CDS |
| ATTCTGGAAACAATAAGAGA+AGG | 0.596485 | 4_4:+23102008 | Msa0675000:CDS |
| AAATTACCCATATTCACTGT+CGG | 0.597914 | 4_4:-23101903 | None:intergenic |
| ATTTCCAGAGCAAATCAGCC+AGG | 0.600652 | 4_4:-23103901 | None:intergenic |
| AAGTGATGATTTGAATGAAG+AGG | 0.606557 | 4_4:-23098889 | None:intergenic |
| TGATGGTTTCCCTAGAAGTG+AGG | 0.612889 | 4_4:+23102109 | Msa0675000:CDS |
| TGATTGCCCTGAAGAAGAGA+TGG | 0.623914 | 4_4:+23102471 | Msa0675000:CDS |
| GTCACTTTAAAATTCTCCAG+TGG | 0.630321 | 4_4:-23103939 | None:intergenic |
| AGGAAGAATCGTTCCATCAG+CGG | 0.632469 | 4_4:+23102028 | Msa0675000:CDS |
| TCTCCGCAGATCAATGCTGT+GGG | 0.641952 | 4_4:+23103284 | Msa0675000:intron |
| GATCAATGCTGTGGGAACAG+AGG | 0.655407 | 4_4:+23103292 | Msa0675000:intron |
| CAATATGTTCAAAAGCTATG+CGG | 0.685079 | 4_4:-23102136 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCATGTATATATTATTTA+TGG | + | chr4_4:23099442-23099461 | Msa0675000:intron | 10.0% |
| !! | TTCATATTTATTATTAGATT+TGG | + | chr4_4:23100984-23101003 | Msa0675000:intron | 10.0% |
| !! | TTTCTATAACATAAATTTAA+GGG | - | chr4_4:23102188-23102207 | None:intergenic | 10.0% |
| !!! | AATTAATTGTTTTATAATGA+GGG | + | chr4_4:23103423-23103442 | Msa0675000:intron | 10.0% |
| !! | GTATAAAAAAAATATATTGA+GGG | + | chr4_4:23104147-23104166 | Msa0675000:three_prime_UTR | 10.0% |
| !! | ATAGTAATTTGAAAGATTTA+TGG | + | chr4_4:23099708-23099727 | Msa0675000:intron | 15.0% |
| !! | TAGTAATTTGAAAGATTTAT+GGG | + | chr4_4:23099709-23099728 | Msa0675000:intron | 15.0% |
| !! | TATACACTTAAAAATGATTA+AGG | + | chr4_4:23100085-23100104 | Msa0675000:intron | 15.0% |
| !!! | TTTTTATATACTAACTTCAA+GGG | - | chr4_4:23100179-23100198 | None:intergenic | 15.0% |
| !!! | ATTTTTATATACTAACTTCA+AGG | - | chr4_4:23100180-23100199 | None:intergenic | 15.0% |
| !!! | TTTTTTATACCTTATACTTT+AGG | + | chr4_4:23100328-23100347 | Msa0675000:intron | 15.0% |
| !!! | TATTTATTATTAGATTTGGT+AGG | + | chr4_4:23100988-23101007 | Msa0675000:intron | 15.0% |
| !! | AATGTAAAAGTTATTTGAAA+TGG | + | chr4_4:23101474-23101493 | Msa0675000:intron | 15.0% |
| !! | CTTTCTATAACATAAATTTA+AGG | - | chr4_4:23102189-23102208 | None:intergenic | 15.0% |
| !! | ATAAAATATCTATAACCAAA+AGG | - | chr4_4:23102808-23102827 | None:intergenic | 15.0% |
| !! | AAAACAATTAATTGTGTAAA+TGG | - | chr4_4:23103416-23103435 | None:intergenic | 15.0% |
| !!! | CAATTAATTGTTTTATAATG+AGG | + | chr4_4:23103422-23103441 | Msa0675000:intron | 15.0% |
| !! | ATTAGTATTACAAGTTATTA+AGG | + | chr4_4:23103508-23103527 | Msa0675000:intron | 15.0% |
| !! | CGTATAAAAAAAATATATTG+AGG | + | chr4_4:23104146-23104165 | Msa0675000:three_prime_UTR | 15.0% |
| !!! | TTTTTTTAGAAAAGCATCTA+TGG | + | chr4_4:23099208-23099227 | Msa0675000:intron | 20.0% |
| !!! | AATTTGTTCAACTTTATTTC+TGG | + | chr4_4:23099272-23099291 | Msa0675000:intron | 20.0% |
| !!! | ATTTGTTCAACTTTATTTCT+GGG | + | chr4_4:23099273-23099292 | Msa0675000:intron | 20.0% |
| !!! | TACCAACTTTTCTTAATATA+CGG | - | chr4_4:23099406-23099425 | None:intergenic | 20.0% |
| !! | AATTAATGTATCTAGTCAAT+CGG | + | chr4_4:23099510-23099529 | Msa0675000:intron | 20.0% |
| !! | TTAATACTAATCATTTGTCT+AGG | - | chr4_4:23099655-23099674 | None:intergenic | 20.0% |
| !! | TTAGTATTAATAACGATGTT+TGG | + | chr4_4:23099665-23099684 | Msa0675000:intron | 20.0% |
| !!! | TAAATGAATTGATTTCGTAA+AGG | + | chr4_4:23099841-23099860 | Msa0675000:intron | 20.0% |
| !! | AACCAAAAGTTACAAATTAT+AGG | + | chr4_4:23099963-23099982 | Msa0675000:intron | 20.0% |
| !!! | AACCTATAATTTGTAACTTT+TGG | - | chr4_4:23099968-23099987 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTGTTATGTC+TGG | - | chr4_4:23100020-23100039 | None:intergenic | 20.0% |
| !!! | TATATTTGATTTCACTTTAG+AGG | - | chr4_4:23100069-23100088 | None:intergenic | 20.0% |
| !! | TTTATTTGTTCCTTTCTAAT+TGG | + | chr4_4:23100437-23100456 | Msa0675000:intron | 20.0% |
| !!! | TTAAAGTATTGACTGTATTA+CGG | + | chr4_4:23100777-23100796 | Msa0675000:intron | 20.0% |
| !!! | TAGACTTATATATTTTGTTG+CGG | - | chr4_4:23101061-23101080 | None:intergenic | 20.0% |
| !!! | TGTTACTATGTTTAAAATCA+AGG | + | chr4_4:23101120-23101139 | Msa0675000:intron | 20.0% |
| !!! | ATGTTTAAAATCAAGGATTT+TGG | + | chr4_4:23101127-23101146 | Msa0675000:intron | 20.0% |
| !!! | TGTTTAAAATCAAGGATTTT+GGG | + | chr4_4:23101128-23101147 | Msa0675000:intron | 20.0% |
| !! | AATAATCTAATTAACCTAGA+TGG | - | chr4_4:23101189-23101208 | None:intergenic | 20.0% |
| !! | AATACAAAAATATTCTAACC+AGG | - | chr4_4:23101314-23101333 | None:intergenic | 20.0% |
| !!! | GAATATTTTTGTATTTGATG+TGG | + | chr4_4:23101319-23101338 | Msa0675000:intron | 20.0% |
| !! | AACACAGAATTAGAAAATTA+TGG | - | chr4_4:23101420-23101439 | None:intergenic | 20.0% |
| !!! | ATTCCTTAATTCATTTTAGT+CGG | - | chr4_4:23101633-23101652 | None:intergenic | 20.0% |
| !!! | ATTCTATTCACTATTGTTTT+TGG | + | chr4_4:23101726-23101745 | Msa0675000:intron | 20.0% |
| !!! | GTTTTTTTTATATGTTTCCT+CGG | + | chr4_4:23101939-23101958 | Msa0675000:intron | 20.0% |
| !! | TTAATGAGTTGTTATAGTAT+AGG | + | chr4_4:23102245-23102264 | Msa0675000:intron | 20.0% |
| !! | TAATGAGTTGTTATAGTATA+GGG | + | chr4_4:23102246-23102265 | Msa0675000:intron | 20.0% |
| !! | AGGTATAATAAACAATAAAG+AGG | - | chr4_4:23102330-23102349 | None:intergenic | 20.0% |
| !! | TAAAAATAGTGCATTTGTAA+AGG | - | chr4_4:23102350-23102369 | None:intergenic | 20.0% |
| !!! | ATTTGATAATAACCTGATTA+CGG | - | chr4_4:23102513-23102532 | None:intergenic | 20.0% |
| !! | TGTTGAATTCAAATAAAAAC+TGG | - | chr4_4:23102724-23102743 | None:intergenic | 20.0% |
| !! | ATATTCAGTTTAATGTCTAA+CGG | + | chr4_4:23102866-23102885 | Msa0675000:intron | 20.0% |
| !!! | CTTAAATTATGATTTGACTT+GGG | + | chr4_4:23102926-23102945 | Msa0675000:intron | 20.0% |
| !!! | ATTTAGATATATGTTTGTTG+TGG | + | chr4_4:23102949-23102968 | Msa0675000:intron | 20.0% |
| !! | CAATTAAAGACAAATTTACT+TGG | - | chr4_4:23103089-23103108 | None:intergenic | 20.0% |
| !! | ACTTGTAATACTAATGAAAA+AGG | - | chr4_4:23103503-23103522 | None:intergenic | 20.0% |
| !!! | ATATTCCAAAACACTATTTT+TGG | + | chr4_4:23103638-23103657 | Msa0675000:intron | 20.0% |
| !!! | TATTCCAAAACACTATTTTT+GGG | + | chr4_4:23103639-23103658 | Msa0675000:intron | 20.0% |
| !! | AATATTAATACACAAAGAGA+TGG | - | chr4_4:23103709-23103728 | None:intergenic | 20.0% |
| !!! | TTTCTTGAATTGATTTTGTG+GGG | - | chr4_4:23098847-23098866 | None:intergenic | 25.0% |
| !!! | GTTTCTTGAATTGATTTTGT+GGG | - | chr4_4:23098848-23098867 | None:intergenic | 25.0% |
| !!! | TGTTTCTTGAATTGATTTTG+TGG | - | chr4_4:23098849-23098868 | None:intergenic | 25.0% |
| ! | AATTCAAGAAACAGAAAATG+TGG | + | chr4_4:23098856-23098875 | Msa0675000:exon | 25.0% |
| !! | TACGGTAAAATTTTGTGAAA+AGG | - | chr4_4:23099388-23099407 | None:intergenic | 25.0% |
| ! | TACCGTATATTAAGAAAAGT+TGG | + | chr4_4:23099401-23099420 | Msa0675000:intron | 25.0% |
| !!! | AAAAGTTGGTAGTGTAATTA+AGG | + | chr4_4:23099415-23099434 | Msa0675000:intron | 25.0% |
| !! | AATGTAAAGTGATTTAGCTT+TGG | + | chr4_4:23099884-23099903 | Msa0675000:intron | 25.0% |
| ! | GTGAATTGAATAAAAATCCA+AGG | + | chr4_4:23099923-23099942 | Msa0675000:intron | 25.0% |
| ! | TCTATAATTAATGTTTGCCT+TGG | - | chr4_4:23099943-23099962 | None:intergenic | 25.0% |
| ! | ATATACTTTAGTGACTAAGT+AGG | + | chr4_4:23100264-23100283 | Msa0675000:intron | 25.0% |
| ! | GTTTATCTAACCAATTAGAA+AGG | - | chr4_4:23100450-23100469 | None:intergenic | 25.0% |
| ! | ATAATACAATCATGAGTTTG+TGG | + | chr4_4:23100510-23100529 | Msa0675000:intron | 25.0% |
| !!! | TCGGTTATAACTTTTGTTTT+AGG | + | chr4_4:23100732-23100751 | Msa0675000:CDS | 25.0% |
| ! | TAATTACAAAAATGCTACCT+TGG | - | chr4_4:23100809-23100828 | None:intergenic | 25.0% |
| ! | CTTGCAATTAACATTATGTA+TGG | + | chr4_4:23100951-23100970 | Msa0675000:intron | 25.0% |
| !!! | ATCTTTGAAGTTACAAGAAA+AGG | - | chr4_4:23101035-23101054 | None:intergenic | 25.0% |
| ! | TTGTTCTCATTATATCTATC+TGG | + | chr4_4:23101527-23101546 | Msa0675000:intron | 25.0% |
| ! | CTGGATATTATTACACAAAT+TGG | + | chr4_4:23101546-23101565 | Msa0675000:intron | 25.0% |
| ! | AAACCGACTAAAATGAATTA+AGG | + | chr4_4:23101627-23101646 | Msa0675000:intron | 25.0% |
| ! | ATAGAATCGTAAAAAACATG+CGG | - | chr4_4:23101713-23101732 | None:intergenic | 25.0% |
| !!! | TATTCACTATTGTTTTTGGT+TGG | + | chr4_4:23101730-23101749 | Msa0675000:intron | 25.0% |
| ! | AATCGTAAGTTTCTTATTGA+TGG | + | chr4_4:23102092-23102111 | Msa0675000:CDS | 25.0% |
| ! | TCATTAACATTAGAAAGAAG+AGG | - | chr4_4:23102232-23102251 | None:intergenic | 25.0% |
| ! | AATAAACAATAAAGAGGATG+TGG | - | chr4_4:23102324-23102343 | None:intergenic | 25.0% |
| ! | TCAAAGAAAAGAACAAAATC+TGG | - | chr4_4:23102454-23102473 | None:intergenic | 25.0% |
| ! | ATTGATCATTATGCAAAAAG+AGG | + | chr4_4:23102671-23102690 | Msa0675000:CDS | 25.0% |
| ! | TTGATCATTATGCAAAAAGA+GGG | + | chr4_4:23102672-23102691 | Msa0675000:CDS | 25.0% |
| ! | ATAACCAAAAGGTTAAGAAA+AGG | - | chr4_4:23102797-23102816 | None:intergenic | 25.0% |
| ! | GCTTAAATTATGATTTGACT+TGG | + | chr4_4:23102925-23102944 | Msa0675000:intron | 25.0% |
| ! | TATAACAATGTGATTAAGAG+TGG | + | chr4_4:23102976-23102995 | Msa0675000:intron | 25.0% |
| ! | TTCGGTAACATATATATCAA+CGG | - | chr4_4:23103056-23103075 | None:intergenic | 25.0% |
| !! | TCTTTAATTGTTTTCTATCG+TGG | + | chr4_4:23103099-23103118 | Msa0675000:intron | 25.0% |
| !! | CTTTAATTGTTTTCTATCGT+GGG | + | chr4_4:23103100-23103119 | Msa0675000:intron | 25.0% |
| ! | ATGAAATATTTGAGCAAGTT+CGG | + | chr4_4:23103315-23103334 | Msa0675000:CDS | 25.0% |
| ! | AGCTAATAAAACACTTTAGA+GGG | - | chr4_4:23103547-23103566 | None:intergenic | 25.0% |
| ! | ATGCTTAATAAAACTCATGA+TGG | - | chr4_4:23103586-23103605 | None:intergenic | 25.0% |
| ! | AGTTAATACCAACAATATGT+TGG | + | chr4_4:23104064-23104083 | Msa0675000:three_prime_UTR | 25.0% |
| AAGTGATGATTTGAATGAAG+AGG | - | chr4_4:23098892-23098911 | None:intergenic | 30.0% | |
| ! | TTTGATTCGTTTCTGATTCT+AGG | + | chr4_4:23098994-23099013 | Msa0675000:intron | 30.0% |
| ! | TATAGTACCTGAAAGTGTAA+AGG | - | chr4_4:23099073-23099092 | None:intergenic | 30.0% |
| ! | ATTTTGTGAAAAGGACAGAA+GGG | - | chr4_4:23099379-23099398 | None:intergenic | 30.0% |
| ! | AATTTTGTGAAAAGGACAGA+AGG | - | chr4_4:23099380-23099399 | None:intergenic | 30.0% |
| ! | TTTCTTATATTTGAGACCAG+AGG | + | chr4_4:23099571-23099590 | Msa0675000:intron | 30.0% |
| ! | TTCTTATATTTGAGACCAGA+GGG | + | chr4_4:23099572-23099591 | Msa0675000:intron | 30.0% |
| TACTCATTTCATCCACTATA+AGG | - | chr4_4:23099763-23099782 | None:intergenic | 30.0% | |
| ! | GTAGTTTTCTGATTTTTGTC+TGG | + | chr4_4:23099780-23099799 | Msa0675000:intron | 30.0% |
| ! | GAATTGATTTCGTAAAGGAT+TGG | + | chr4_4:23099846-23099865 | Msa0675000:intron | 30.0% |
| TACTAACTTCAAGGGATATT+GGG | - | chr4_4:23100171-23100190 | None:intergenic | 30.0% | |
| ATACTAACTTCAAGGGATAT+TGG | - | chr4_4:23100172-23100191 | None:intergenic | 30.0% | |
| ATACTTGAAGGACTAAATTG+AGG | + | chr4_4:23100297-23100316 | Msa0675000:intron | 30.0% | |
| TATTTGAAAGACACACTCTT+CGG | - | chr4_4:23100618-23100637 | None:intergenic | 30.0% | |
| ATAACCGAATCCATATGTTT+GGG | - | chr4_4:23100720-23100739 | None:intergenic | 30.0% | |
| TATAACCGAATCCATATGTT+TGG | - | chr4_4:23100721-23100740 | None:intergenic | 30.0% | |
| CTGAGACATTCACAAAATTA+CGG | - | chr4_4:23100883-23100902 | None:intergenic | 30.0% | |
| ! | GAAAGTTGATTGATCACTAA+TGG | + | chr4_4:23101246-23101265 | Msa0675000:intron | 30.0% |
| TGAAATAAGAACTACAACTC+TGG | + | chr4_4:23101380-23101399 | Msa0675000:intron | 30.0% | |
| TAGAATCGTAAAAAACATGC+GGG | - | chr4_4:23101712-23101731 | None:intergenic | 30.0% | |
| GCAAGAATTGTTGAAACATT+TGG | + | chr4_4:23101833-23101852 | Msa0675000:CDS | 30.0% | |
| AAATTACCCATATTCACTGT+CGG | - | chr4_4:23101906-23101925 | None:intergenic | 30.0% | |
| ! | ATTCTGGAAACAATAAGAGA+AGG | + | chr4_4:23102008-23102027 | Msa0675000:CDS | 30.0% |
| ! | ATTCTAAGAGAGATGCAATA+TGG | + | chr4_4:23102065-23102084 | Msa0675000:CDS | 30.0% |
| CAATATGTTCAAAAGCTATG+CGG | - | chr4_4:23102139-23102158 | None:intergenic | 30.0% | |
| CATAATAAAGAGTGATTACG+TGG | - | chr4_4:23102416-23102435 | None:intergenic | 30.0% | |
| ! | GAAACGTCTTAAAGTATTTG+AGG | + | chr4_4:23102631-23102650 | Msa0675000:CDS | 30.0% |
| TTTGCATAATGATCAATCAC+AGG | - | chr4_4:23102668-23102687 | None:intergenic | 30.0% | |
| TTCAGTAGAATATCATTCAC+TGG | + | chr4_4:23103021-23103040 | Msa0675000:intron | 30.0% | |
| TCAGTAGAATATCATTCACT+GGG | + | chr4_4:23103022-23103041 | Msa0675000:intron | 30.0% | |
| TCGGTAACATATATATCAAC+GGG | - | chr4_4:23103055-23103074 | None:intergenic | 30.0% | |
| AAAAAAATCAGCTTGTCACA+TGG | + | chr4_4:23103212-23103231 | Msa0675000:intron | 30.0% | |
| GTAATACTAATGAAAAAGGC+CGG | - | chr4_4:23103499-23103518 | None:intergenic | 30.0% | |
| CAGCTAATAAAACACTTTAG+AGG | - | chr4_4:23103548-23103567 | None:intergenic | 30.0% | |
| !! | TAAAACTCATGATGGATGTA+TGG | - | chr4_4:23103578-23103597 | None:intergenic | 30.0% |
| ! | ACTACCCAAAAATAGTGTTT+TGG | - | chr4_4:23103646-23103665 | None:intergenic | 30.0% |
| TCTAAATTATAAGTCCACCT+TGG | + | chr4_4:23103680-23103699 | Msa0675000:intron | 30.0% | |
| TAGCTAACTAGAAGTTAACT+AGG | - | chr4_4:23103868-23103887 | None:intergenic | 30.0% | |
| ! | TTTAAAGTGACTGGTTGTAA+CGG | + | chr4_4:23103951-23103970 | Msa0675000:three_prime_UTR | 30.0% |
| TGCCTTTAGTATCTTAAAGA+AGG | + | chr4_4:23104174-23104193 | Msa0675000:three_prime_UTR | 30.0% | |
| TACCTGTGTGATGTGAAAAA+GGG | - | chr4_4:23098916-23098935 | None:intergenic | 35.0% | |
| TTACCTGTGTGATGTGAAAA+AGG | - | chr4_4:23098917-23098936 | None:intergenic | 35.0% | |
| ! | ATTCGTTTCTGATTCTAGGA+AGG | + | chr4_4:23098998-23099017 | Msa0675000:intron | 35.0% |
| CATTGCCATAGATTTATCTC+TGG | + | chr4_4:23099043-23099062 | Msa0675000:CDS | 35.0% | |
| !!! | CTTTATTTCTGGGTTTTGAG+AGG | + | chr4_4:23099283-23099302 | Msa0675000:intron | 35.0% |
| GGTACATGTCAAATGGTAAA+AGG | - | chr4_4:23099354-23099373 | None:intergenic | 35.0% | |
| ! | TTTTGTGAAAAGGACAGAAG+GGG | - | chr4_4:23099378-23099397 | None:intergenic | 35.0% |
| ATCTAGTCAATCGGATACAT+TGG | + | chr4_4:23099519-23099538 | Msa0675000:intron | 35.0% | |
| ! | TCTTATATTTGAGACCAGAG+GGG | + | chr4_4:23099573-23099592 | Msa0675000:intron | 35.0% |
| TCTTCAAAGAGTCCTTATAG+TGG | + | chr4_4:23099748-23099767 | Msa0675000:intron | 35.0% | |
| AGCATCAAGCCTAAAGTATA+AGG | - | chr4_4:23100340-23100359 | None:intergenic | 35.0% | |
| TTCTCCCAAACATATGGATT+CGG | + | chr4_4:23100713-23100732 | Msa0675000:CDS | 35.0% | |
| ! | AGCTAATGCATGTTGATTGT+TGG | + | chr4_4:23101080-23101099 | Msa0675000:intron | 35.0% |
| ! | TTGGGAAGTATAGTCAATGA+TGG | + | chr4_4:23101146-23101165 | Msa0675000:intron | 35.0% |
| TAGTCAATGATGGTTAATGC+TGG | + | chr4_4:23101156-23101175 | Msa0675000:intron | 35.0% | |
| CAATCAACTTTCACTTACTC+TGG | - | chr4_4:23101238-23101257 | None:intergenic | 35.0% | |
| TTTGATGTGGTTGTTCTGTT+AGG | + | chr4_4:23101332-23101351 | Msa0675000:intron | 35.0% | |
| ACACAAATTGGCATGACTAA+AGG | + | chr4_4:23101558-23101577 | Msa0675000:intron | 35.0% | |
| ACTAAAGGCTAACCATACAA+TGG | + | chr4_4:23101573-23101592 | Msa0675000:intron | 35.0% | |
| AGTTAAGCTTAGCCATTGTA+TGG | - | chr4_4:23101588-23101607 | None:intergenic | 35.0% | |
| TTAGAAAGAAGAGGCAAAAG+AGG | - | chr4_4:23102223-23102242 | None:intergenic | 35.0% | |
| AAAGCATACAAAATCAGAGC+TGG | - | chr4_4:23102283-23102302 | None:intergenic | 35.0% | |
| TCACTCTTTATTATGCAGAC+TGG | + | chr4_4:23102421-23102440 | Msa0675000:intron | 35.0% | |
| AAAAAGAGGGAGACTTCATA+GGG | + | chr4_4:23102685-23102704 | Msa0675000:CDS | 35.0% | |
| ! | CAGTTTTTCTATGCAAGTCA+AGG | - | chr4_4:23102774-23102793 | None:intergenic | 35.0% |
| ! | ACTGCCTTTTCTTAACCTTT+TGG | + | chr4_4:23102790-23102809 | Msa0675000:intron | 35.0% |
| TCAGTTTAATGTCTAACGGT+TGG | + | chr4_4:23102870-23102889 | Msa0675000:intron | 35.0% | |
| CAGTTTAATGTCTAACGGTT+GGG | + | chr4_4:23102871-23102890 | Msa0675000:intron | 35.0% | |
| ! | AAGATAGCTTTTTGTGCGTT+TGG | + | chr4_4:23102903-23102922 | Msa0675000:intron | 35.0% |
| TTACTTGGACAGTTTCAGTT+CGG | - | chr4_4:23103074-23103093 | None:intergenic | 35.0% | |
| ! | TTTTGCCATCTGATTCAAAC+GGG | - | chr4_4:23103137-23103156 | None:intergenic | 35.0% |
| ! | GTTTTGCCATCTGATTCAAA+CGG | - | chr4_4:23103138-23103157 | None:intergenic | 35.0% |
| ! | AGTCTCTTTCTCAGTTTTCT+CGG | + | chr4_4:23103159-23103178 | Msa0675000:intron | 35.0% |
| CATGGTTGTACATTTCTTTC+TGG | + | chr4_4:23103230-23103249 | Msa0675000:intron | 35.0% | |
| TTACAAATGCTCAAGATGCT+TGG | + | chr4_4:23103388-23103407 | Msa0675000:intron | 35.0% | |
| ! | ATGCCTTTATTTGCTTCTGT+GGG | + | chr4_4:23103604-23103623 | Msa0675000:intron | 35.0% |
| AGAGTGATACAAGTGATTAG+AGG | - | chr4_4:23103750-23103769 | None:intergenic | 35.0% | |
| !! | TTGTGAGAGCATCGTAAATT+TGG | + | chr4_4:23103809-23103828 | Msa0675000:three_prime_UTR | 35.0% |
| !! | TGTGAGAGCATCGTAAATTT+GGG | + | chr4_4:23103810-23103829 | Msa0675000:three_prime_UTR | 35.0% |
| TCGTAAATTTGGGTGAAGTA+TGG | + | chr4_4:23103820-23103839 | Msa0675000:three_prime_UTR | 35.0% | |
| !! | GTCACTTTAAAATTCTCCAG+TGG | - | chr4_4:23103942-23103961 | None:intergenic | 35.0% |
| !!! | CTGGAGAATTTTAAAGTGAC+TGG | + | chr4_4:23103942-23103961 | Msa0675000:three_prime_UTR | 35.0% |
| TCTACTGTTATTCCTGTCAA+GGG | - | chr4_4:23104007-23104026 | None:intergenic | 35.0% | |
| ATCTACTGTTATTCCTGTCA+AGG | - | chr4_4:23104008-23104027 | None:intergenic | 35.0% | |
| !! | AATATGTTGGTTCTAGCGAA+AGG | + | chr4_4:23104077-23104096 | Msa0675000:three_prime_UTR | 35.0% |
| !! | TTCCCTTTTTCACATCACAC+AGG | + | chr4_4:23098911-23098930 | Msa0675000:CDS | 40.0% |
| GCGATCCAGAGATAAATCTA+TGG | - | chr4_4:23099051-23099070 | None:intergenic | 40.0% | |
| AACTTCAAGGGATATTGGGA+TGG | - | chr4_4:23100167-23100186 | None:intergenic | 40.0% | |
| ! | TCTGTTTCATTAGTCTCTGC+TGG | - | chr4_4:23100239-23100258 | None:intergenic | 40.0% |
| GGAGAGATAGTGATACTTGA+AGG | + | chr4_4:23100285-23100304 | Msa0675000:intron | 40.0% | |
| CAAAGGGAACAAAGAAAGAC+AGG | - | chr4_4:23100673-23100692 | None:intergenic | 40.0% | |
| TTCTTTGTTCCCTTTGATGC+AGG | + | chr4_4:23100677-23100696 | Msa0675000:intron | 40.0% | |
| CGTGATTTCTCCCAAACATA+TGG | + | chr4_4:23100707-23100726 | Msa0675000:CDS | 40.0% | |
| CTGTATTACGGTCAAATCCA+AGG | + | chr4_4:23100789-23100808 | Msa0675000:intron | 40.0% | |
| ATTGCAAGCATAGAACTGCA+GGG | - | chr4_4:23100939-23100958 | None:intergenic | 40.0% | |
| AATTGCAAGCATAGAACTGC+AGG | - | chr4_4:23100940-23100959 | None:intergenic | 40.0% | |
| AAAAGGACCTTATCAACCAG+TGG | - | chr4_4:23101018-23101037 | None:intergenic | 40.0% | |
| AATACTGTTCTCATGCTCTC+AGG | + | chr4_4:23101779-23101798 | Msa0675000:intron | 40.0% | |
| ATACTGTTCTCATGCTCTCA+GGG | + | chr4_4:23101780-23101799 | Msa0675000:intron | 40.0% | |
| ! | TGATCTTTTGCGGAAGGAAA+TGG | + | chr4_4:23101877-23101896 | Msa0675000:CDS | 40.0% |
| ATGGTTTCCGACAGTGAATA+TGG | + | chr4_4:23101896-23101915 | Msa0675000:CDS | 40.0% | |
| TGGTTTCCGACAGTGAATAT+GGG | + | chr4_4:23101897-23101916 | Msa0675000:CDS | 40.0% | |
| GTTTCACCATCTCTTCTTCA+GGG | - | chr4_4:23102480-23102499 | None:intergenic | 40.0% | |
| CTGAAGAAGAGATGGTGAAA+CGG | + | chr4_4:23102479-23102498 | Msa0675000:CDS | 40.0% | |
| TGAAGAAGAGATGGTGAAAC+GGG | + | chr4_4:23102480-23102499 | Msa0675000:CDS | 40.0% | |
| ! | ATATGCTGCTCATTTTACGC+AGG | + | chr4_4:23102577-23102596 | Msa0675000:intron | 40.0% |
| ! | TATGCTGCTCATTTTACGCA+GGG | + | chr4_4:23102578-23102597 | Msa0675000:intron | 40.0% |
| CAAAAAGAGGGAGACTTCAT+AGG | + | chr4_4:23102684-23102703 | Msa0675000:CDS | 40.0% | |
| ATGTGATTAAGAGTGGTCAC+TGG | + | chr4_4:23102983-23103002 | Msa0675000:intron | 40.0% | |
| TTCTCGGTTTCAGTATGTGA+TGG | + | chr4_4:23103175-23103194 | Msa0675000:intron | 40.0% | |
| CACCTAAAATGCAAGGACTT+AGG | + | chr4_4:23103472-23103491 | Msa0675000:intron | 40.0% | |
| ! | GTCCTAAGTCCTTGCATTTT+AGG | - | chr4_4:23103477-23103496 | None:intergenic | 40.0% |
| AAAATGCAAGGACTTAGGAC+CGG | + | chr4_4:23103477-23103496 | Msa0675000:intron | 40.0% | |
| ! | CATGCCTTTATTTGCTTCTG+TGG | + | chr4_4:23103603-23103622 | Msa0675000:intron | 40.0% |
| ! | TGCCTTTATTTGCTTCTGTG+GGG | + | chr4_4:23103605-23103624 | Msa0675000:intron | 40.0% |
| TTCCCCACAGAAGCAAATAA+AGG | - | chr4_4:23103610-23103629 | None:intergenic | 40.0% | |
| TTGTATCACTCTGCAGCAAA+CGG | + | chr4_4:23103758-23103777 | Msa0675000:intron | 40.0% | |
| TGCATGAAAGCTGTGTGAAT+AGG | + | chr4_4:23103782-23103801 | Msa0675000:exon | 40.0% | |
| ! | TGGGTGAAGTATGGATTTTG+TGG | + | chr4_4:23103829-23103848 | Msa0675000:three_prime_UTR | 40.0% |
| ! | GGGTGAAGTATGGATTTTGT+GGG | + | chr4_4:23103830-23103849 | Msa0675000:three_prime_UTR | 40.0% |
| AGCTACAAGATCCAAATTCC+TGG | + | chr4_4:23103883-23103902 | Msa0675000:three_prime_UTR | 40.0% | |
| TTACCGTAAAACTCATCCAC+TGG | + | chr4_4:23103923-23103942 | Msa0675000:three_prime_UTR | 40.0% | |
| ! | TCTCCAGTGGATGAGTTTTA+CGG | - | chr4_4:23103929-23103948 | None:intergenic | 40.0% |
| CGCTAGAACCAACATATTGT+TGG | - | chr4_4:23104075-23104094 | None:intergenic | 40.0% | |
| !! | TTGGTTCTAGCGAAAGGATT+TGG | + | chr4_4:23104083-23104102 | Msa0675000:three_prime_UTR | 40.0% |
| TGGATCGCCTTTACACTTTC+AGG | + | chr4_4:23099063-23099082 | Msa0675000:CDS | 45.0% | |
| AAGGGGTGGTACATGTCAAA+TGG | - | chr4_4:23099361-23099380 | None:intergenic | 45.0% | |
| GAAGAGAATAGTTACCCCTC+TGG | - | chr4_4:23099590-23099609 | None:intergenic | 45.0% | |
| ! | GGATATTGGGATGGATTTCG+AGG | - | chr4_4:23100158-23100177 | None:intergenic | 45.0% |
| GTTCCCTTTGATGCAGGAAA+AGG | + | chr4_4:23100683-23100702 | Msa0675000:intron | 45.0% | |
| ! | CGTCCTTTTCCTGCATCAAA+GGG | - | chr4_4:23100689-23100708 | None:intergenic | 45.0% |
| ! | ACGTCCTTTTCCTGCATCAA+AGG | - | chr4_4:23100690-23100709 | None:intergenic | 45.0% |
| GTTTCATGCTGTACTCTACC+TGG | + | chr4_4:23100910-23100929 | Msa0675000:intron | 45.0% | |
| ! | AGATTTGGTAGGTACACCAC+TGG | + | chr4_4:23100999-23101018 | Msa0675000:intron | 45.0% |
| ! | AGGTACACCACTGGTTGATA+AGG | + | chr4_4:23101008-23101027 | Msa0675000:intron | 45.0% |
| !! | CTTTCACTTACTCTGGAGTC+TGG | - | chr4_4:23101231-23101250 | None:intergenic | 45.0% |
| GATGTGGTTGTTCTGTTAGG+TGG | + | chr4_4:23101335-23101354 | Msa0675000:intron | 45.0% | |
| GTTAGGTGGAAACTCTGTGT+TGG | + | chr4_4:23101349-23101368 | Msa0675000:intron | 45.0% | |
| TACTGTTCTCATGCTCTCAG+GGG | + | chr4_4:23101781-23101800 | Msa0675000:intron | 45.0% | |
| ! | TGTGTACCTTTTCCACTACC+AGG | - | chr4_4:23101809-23101828 | None:intergenic | 45.0% |
| GGATTTAAGCATCTGAGTGC+TGG | + | chr4_4:23101854-23101873 | Msa0675000:CDS | 45.0% | |
| !!! | TGAGTGCTGGTGATCTTTTG+CGG | + | chr4_4:23101867-23101886 | Msa0675000:CDS | 45.0% |
| TTTCCTCGGCGCATATTTGA+GGG | + | chr4_4:23101953-23101972 | Msa0675000:intron | 45.0% | |
| TCAAAACAGCGCGATGATTC+TGG | + | chr4_4:23101992-23102011 | Msa0675000:intron | 45.0% | |
| AGGAAGAATCGTTCCATCAG+CGG | + | chr4_4:23102028-23102047 | Msa0675000:CDS | 45.0% | |
| TGATGGTTTCCCTAGAAGTG+AGG | + | chr4_4:23102109-23102128 | Msa0675000:CDS | 45.0% | |
| TGATTGCCCTGAAGAAGAGA+TGG | + | chr4_4:23102471-23102490 | Msa0675000:CDS | 45.0% | |
| CGTTTCACCATCTCTTCTTC+AGG | - | chr4_4:23102481-23102500 | None:intergenic | 45.0% | |
| GATTAAGAGTGGTCACTGGT+TGG | + | chr4_4:23102987-23103006 | Msa0675000:intron | 45.0% | |
| TGACACCCGTTTGAATCAGA+TGG | + | chr4_4:23103129-23103148 | Msa0675000:intron | 45.0% | |
| !! | CCTTGCATTTTAGGTGCTCA+GGG | - | chr4_4:23103468-23103487 | None:intergenic | 45.0% |
| !! | TCCTTGCATTTTAGGTGCTC+AGG | - | chr4_4:23103469-23103488 | None:intergenic | 45.0% |
| TTGCTTCTGTGGGGAAGAAA+AGG | + | chr4_4:23103614-23103633 | Msa0675000:intron | 45.0% | |
| ACACAAAGAGATGGAAGCCA+AGG | - | chr4_4:23103700-23103719 | None:intergenic | 45.0% | |
| GAGCAAATCAGCCAGGAATT+TGG | - | chr4_4:23103897-23103916 | None:intergenic | 45.0% | |
| !! | AATTCCTGGCTGATTTGCTC+TGG | + | chr4_4:23103897-23103916 | Msa0675000:three_prime_UTR | 45.0% |
| ATTTCCAGAGCAAATCAGCC+AGG | - | chr4_4:23103904-23103923 | None:intergenic | 45.0% | |
| !! | GAAATATTAAAATATTAAAT+TGG | + | chr4_4:23100532-23100551 | Msa0675000:intron | 5.0% |
| TGTGAAAAGGACAGAAGGGG+TGG | - | chr4_4:23099375-23099394 | None:intergenic | 50.0% | |
| ! | CATAGAACTGCAGGGTATCC+AGG | - | chr4_4:23100931-23100950 | None:intergenic | 50.0% |
| GACACAGTCACTGTCTAGAG+AGG | + | chr4_4:23101288-23101307 | Msa0675000:intron | 50.0% | |
| ACTGTTCTCATGCTCTCAGG+GGG | + | chr4_4:23101782-23101801 | Msa0675000:intron | 50.0% | |
| ! | TGCTGGTGATCTTTTGCGGA+AGG | + | chr4_4:23101871-23101890 | Msa0675000:CDS | 50.0% |
| GTTTCCTCGGCGCATATTTG+AGG | + | chr4_4:23101952-23101971 | Msa0675000:intron | 50.0% | |
| AAACCCTCAAATATGCGCCG+AGG | - | chr4_4:23101959-23101978 | None:intergenic | 50.0% | |
| AATCTGACAGTCACCGCTGA+TGG | - | chr4_4:23102044-23102063 | None:intergenic | 50.0% | |
| TGCGGTTCTCCTCACTTCTA+GGG | - | chr4_4:23102121-23102140 | None:intergenic | 50.0% | |
| ATGCGGTTCTCCTCACTTCT+AGG | - | chr4_4:23102122-23102141 | None:intergenic | 50.0% | |
| ATCTCCGCAGATCAATGCTG+TGG | + | chr4_4:23103283-23103302 | Msa0675000:intron | 50.0% | |
| TCTCCGCAGATCAATGCTGT+GGG | + | chr4_4:23103284-23103303 | Msa0675000:intron | 50.0% | |
| !! | GTTCCCACAGCATTGATCTG+CGG | - | chr4_4:23103290-23103309 | None:intergenic | 50.0% |
| GATCAATGCTGTGGGAACAG+AGG | + | chr4_4:23103292-23103311 | Msa0675000:intron | 50.0% | |
| ! | GCAAGTTCGGCCAGTTTTTG+CGG | + | chr4_4:23103328-23103347 | Msa0675000:CDS | 50.0% |
| ACCTCACATGCCGCAAAAAC+TGG | - | chr4_4:23103341-23103360 | None:intergenic | 50.0% | |
| CCCTGAGCACCTAAAATGCA+AGG | + | chr4_4:23103465-23103484 | Msa0675000:intron | 50.0% | |
| CAAAGAGATGGAAGCCAAGG+TGG | - | chr4_4:23103697-23103716 | None:intergenic | 50.0% | |
| GTCGAATCGTAACCCTTGAC+AGG | + | chr4_4:23103992-23104011 | Msa0675000:three_prime_UTR | 50.0% | |
| ATGCTGGAGCTGAGCCATCT+AGG | + | chr4_4:23101172-23101191 | Msa0675000:intron | 55.0% | |
| AGTCACTGTCTAGAGAGGCC+TGG | + | chr4_4:23101293-23101312 | Msa0675000:intron | 55.0% | |
| CTGTTCTCATGCTCTCAGGG+GGG | + | chr4_4:23101783-23101802 | Msa0675000:intron | 55.0% | |
| ! | GCCAGTTTTTGCGGCATGTG+AGG | + | chr4_4:23103337-23103356 | Msa0675000:CDS | 55.0% |
| !! | ACGGGTGCTGAGCCGTAATC+AGG | + | chr4_4:23102498-23102517 | Msa0675000:CDS | 60.0% |
| !! | GGGGGGCCTGGTAGTGGAAA+AGG | + | chr4_4:23101800-23101819 | Msa0675000:intron | 65.0% |
| CTCATGCTCTCAGGGGGGCC+TGG | + | chr4_4:23101788-23101807 | Msa0675000:intron | 70.0% | |
| CTCTCAGGGGGGCCTGGTAG+TGG | + | chr4_4:23101794-23101813 | Msa0675000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 23098843 | 23104197 | 23098843 | ID=Msa0675000;Name=Msa0675000 |
| chr4_4 | mRNA | 23098843 | 23104197 | 23098843 | ID=Msa0675000-mRNA-1;Parent=Msa0675000;Name=Msa0675000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|1|1|9|409|242 |
| chr4_4 | exon | 23098843 | 23098932 | 23098843 | ID=Msa0675000-mRNA-1:exon:6427;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23099016 | 23099084 | 23099016 | ID=Msa0675000-mRNA-1:exon:6428;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23100699 | 23100753 | 23100699 | ID=Msa0675000-mRNA-1:exon:6429;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23101801 | 23101918 | 23101801 | ID=Msa0675000-mRNA-1:exon:6430;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23102001 | 23102157 | 23102001 | ID=Msa0675000-mRNA-1:exon:6431;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23102439 | 23102519 | 23102439 | ID=Msa0675000-mRNA-1:exon:6432;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23102599 | 23102706 | 23102599 | ID=Msa0675000-mRNA-1:exon:6433;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23103293 | 23103358 | 23103293 | ID=Msa0675000-mRNA-1:exon:6434;Parent=Msa0675000-mRNA-1 |
| chr4_4 | exon | 23103774 | 23104197 | 23103774 | ID=Msa0675000-mRNA-1:exon:6435;Parent=Msa0675000-mRNA-1 |
| chr4_4 | five_prime_UTR | 23098843 | 23098872 | 23098843 | ID=Msa0675000-mRNA-1:five_prime_utr;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23098873 | 23098932 | 23098873 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23099016 | 23099084 | 23099016 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23100699 | 23100753 | 23100699 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23101801 | 23101918 | 23101801 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23102001 | 23102157 | 23102001 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23102439 | 23102519 | 23102439 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23102599 | 23102706 | 23102599 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23103293 | 23103358 | 23103293 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | CDS | 23103774 | 23103788 | 23103774 | ID=Msa0675000-mRNA-1:cds;Parent=Msa0675000-mRNA-1 |
| chr4_4 | three_prime_UTR | 23103789 | 23104197 | 23103789 | ID=Msa0675000-mRNA-1:three_prime_utr;Parent=Msa0675000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
