AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183900 MtrunA17_Chr1g0210481 96.471 85 3 0 1 85 57 141 3.35e-56 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183900 AT5G04750.1 57.143 70 24 4 13 80 25 90 5.53e-14 61.6

Find 53 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGTTGAGGAGGGAGTT+TGG 0.243867 1_4:+72886769 Msa0183900:three_prime_UTR
TCGAAGCTACTCTCAATTCT+AGG 0.308350 1_4:+72886801 Msa0183900:three_prime_UTR
ATAATTTGGTACCTTGTTAT+CGG 0.335217 1_4:-72884839 None:intergenic
TCATGTAGAACTGTTCGATT+TGG 0.346117 1_4:+72886934 Msa0183900:three_prime_UTR
ACATGATGGATGCAACTAAA+TGG 0.355735 1_4:-72886576 None:intergenic
ATCTGTAGGTTTCTCCGCCT+TGG 0.365908 1_4:-72884812 None:intergenic
CTAGCCGTCAAGGTCACTTA+AGG 0.384006 1_4:+72886438 Msa0183900:three_prime_UTR
ATGCATGTGATGTGAGCATT+AGG 0.389168 1_4:-72886829 None:intergenic
TCACATGCATATAAAATTGT+TGG 0.391346 1_4:+72886842 Msa0183900:three_prime_UTR
TTAGTTGCATCCATCATGTT+TGG 0.401272 1_4:+72886580 Msa0183900:three_prime_UTR
CAAAGAAAACGTCTACATTC+AGG 0.413338 1_4:+72884662 Msa0183900:CDS
GAAATGGGAGAGGGAAAGGT+TGG 0.423182 1_4:+72884762 Msa0183900:intron
ACAGAAGCTAGCGGCTGATA+AGG 0.427012 1_4:+72884789 Msa0183900:CDS
TTTATTTGTAGTTTCGTCAA+TGG 0.432771 1_4:+72886541 Msa0183900:three_prime_UTR
TGCATGTGATGTGAGCATTA+GGG 0.448966 1_4:-72886828 None:intergenic
CACCTAGGCTGACCTTAGAT+TGG 0.453589 1_4:-72886909 None:intergenic
AGGGATCGTGACTCGTTCAA+TGG 0.456515 1_4:+72884566 Msa0183900:CDS
GGAGTCTTAGCTCCAATCTA+AGG 0.465363 1_4:+72886897 Msa0183900:three_prime_UTR
CTTCCCTTAAGTGACCTTGA+CGG 0.483822 1_4:-72886442 None:intergenic
TAGCCGTCAAGGTCACTTAA+GGG 0.484955 1_4:+72886439 Msa0183900:three_prime_UTR
TTGTTATCGGCATTATCTGT+AGG 0.488471 1_4:-72884826 None:intergenic
AGATTAAGATAGTAATGAAA+GGG 0.490479 1_4:+72886876 Msa0183900:three_prime_UTR
TATTGAGATTCAGTTGAGGA+GGG 0.492764 1_4:+72886762 Msa0183900:three_prime_UTR
ATCGGTCTTGCTAGCCGTCA+AGG 0.499625 1_4:+72886428 Msa0183900:three_prime_UTR
TAGATTAAGATAGTAATGAA+AGG 0.501246 1_4:+72886875 Msa0183900:three_prime_UTR
ATTTGAATGTAGAAACCTGA+TGG 0.520627 1_4:+72886385 Msa0183900:intron
ATATTGAGATTCAGTTGAGG+AGG 0.524048 1_4:+72886761 Msa0183900:three_prime_UTR
TCTCGCTTCTTCAGCGGCAA+AGG 0.525127 1_4:+72884612 Msa0183900:CDS
CCAGCCCAGTAAAATATCAC+AGG 0.534808 1_4:-72886629 None:intergenic
TTTGTGTGTAGAAATGGGAG+AGG 0.537501 1_4:+72884752 Msa0183900:intron
TCTTGCTAAATAAAAGAGCT+AGG 0.543420 1_4:+72886983 Msa0183900:three_prime_UTR
TTGTGTGTAGAAATGGGAGA+GGG 0.546268 1_4:+72884753 Msa0183900:intron
TGTAGAAATGGGAGAGGGAA+AGG 0.549281 1_4:+72884758 Msa0183900:intron
ACATAATGTACCAAACATGA+TGG 0.562912 1_4:-72886590 None:intergenic
ATGTGATTGCAATGAACCGC+TGG 0.586162 1_4:-72884491 None:intergenic
TACAGATAATGCCGATAACA+AGG 0.591322 1_4:+72884828 Msa0183900:CDS
CCAGTAAAATATCACAGGGA+AGG 0.592299 1_4:-72886624 None:intergenic
TTTGAATGTAGAAACCTGAT+GGG 0.600438 1_4:+72886386 Msa0183900:intron
TCAATGGATTCAACATCTCG+TGG 0.600776 1_4:+72884582 Msa0183900:CDS
TGAGATCAGCACTGAGTCGA+GGG 0.604557 1_4:+72884547 Msa0183900:CDS
ATGAGATCAGCACTGAGTCG+AGG 0.608842 1_4:+72884546 Msa0183900:CDS
GCTTCTTCTCGCTTCTTCAG+CGG 0.618308 1_4:+72884606 Msa0183900:CDS
GCATGTGATGTGAGCATTAG+GGG 0.628230 1_4:-72886827 None:intergenic
CTCCAATCTAAGGTCAGCCT+AGG 0.629742 1_4:+72886907 Msa0183900:three_prime_UTR
GCTAGCGGCTGATAAGGCCA+AGG 0.640541 1_4:+72884795 Msa0183900:CDS
CAAAGGTAAGATTCTTAGCG+AGG 0.644514 1_4:+72884629 Msa0183900:CDS
CAGCCCAGTAAAATATCACA+GGG 0.644544 1_4:-72886628 None:intergenic
CAGTTCTACATGAATCACCT+AGG 0.663049 1_4:-72886924 None:intergenic
AGCGGCTGATAAGGCCAAGG+CGG 0.664107 1_4:+72884798 Msa0183900:CDS
TGGATATTGAGATTCAGTTG+AGG 0.669746 1_4:+72886758 Msa0183900:three_prime_UTR
ACTTAAGGGAAGCAATCATG+AGG 0.694142 1_4:+72886453 Msa0183900:three_prime_UTR
GTTGGAGAAACAGAAGCTAG+CGG 0.726434 1_4:+72884780 Msa0183900:CDS
ATGTAATGTGAGTTTCACTG+TGG 0.776960 1_4:+72886738 Msa0183900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATATGTCATATA+TGG + chr1_4:72886213-72886232 Msa0183900:intron 10.0%
!!! TACCAAATTATTTTGTTTTT+AGG + chr1_4:72884851-72884870 Msa0183900:intron 15.0%
!! AACCTAAAAACAAAATAATT+TGG - chr1_4:72884856-72884875 None:intergenic 15.0%
!!! AATTTTAAGATATGAATCAT+AGG - chr1_4:72885084-72885103 None:intergenic 15.0%
!! AAAGAAAAAAAAAAAAGGAA+GGG - chr1_4:72885718-72885737 None:intergenic 15.0%
!! GAAAGAAAGAAAAAAAAAAA+AGG - chr1_4:72885723-72885742 None:intergenic 15.0%
!!! TTTTTTTTTTTCTTTCTTTC+TGG + chr1_4:72885723-72885742 Msa0183900:intron 15.0%
!!! TTTTTTTTTTCTTTCTTTCT+GGG + chr1_4:72885724-72885743 Msa0183900:intron 15.0%
!!! AATTTTAAAAGTGAAGAATT+TGG - chr1_4:72885901-72885920 None:intergenic 15.0%
!!! GAAATCATTTTGTTCAAAAA+TGG + chr1_4:72884521-72884540 Msa0183900:exon 20.0%
!! TAAAAAAGGATGAAGAAAAA+GGG - chr1_4:72884700-72884719 None:intergenic 20.0%
!!! ATATTTCTTTCTGCATATTT+TGG + chr1_4:72884886-72884905 Msa0183900:intron 20.0%
!!! TATTTCTTTCTGCATATTTT+GGG + chr1_4:72884887-72884906 Msa0183900:intron 20.0%
!! ATATTAATAGATCACAAATC+TGG - chr1_4:72884924-72884943 None:intergenic 20.0%
!!! TTTTTGATTTGGTGTATTTT+TGG + chr1_4:72884977-72884996 Msa0183900:intron 20.0%
!!! TTTGAAATTGTATCATATGA+TGG + chr1_4:72885056-72885075 Msa0183900:intron 20.0%
!! TATCAAAGTTACAGAATATT+GGG - chr1_4:72885165-72885184 None:intergenic 20.0%
!! ATATCAAAGTTACAGAATAT+TGG - chr1_4:72885166-72885185 None:intergenic 20.0%
!! TAACTTTGATATGAATATGA+TGG + chr1_4:72885174-72885193 Msa0183900:intron 20.0%
!! GAAAGAAAAAAAAAAAAGGA+AGG - chr1_4:72885719-72885738 None:intergenic 20.0%
!!! TTTTTTTTTCTTTCTTTCTG+GGG + chr1_4:72885725-72885744 Msa0183900:intron 20.0%
!! GCTTAAGATAATAATCTAAA+GGG + chr1_4:72886094-72886113 Msa0183900:intron 20.0%
!! TAGATTAAGATAGTAATGAA+AGG + chr1_4:72886875-72886894 Msa0183900:three_prime_UTR 20.0%
!! AGATTAAGATAGTAATGAAA+GGG + chr1_4:72886876-72886895 Msa0183900:three_prime_UTR 20.0%
! AAAAAAGGATGAAGAAAAAG+GGG - chr1_4:72884699-72884718 None:intergenic 25.0%
! CTAAAAAAGGATGAAGAAAA+AGG - chr1_4:72884701-72884720 None:intergenic 25.0%
! CAAGAAATTGGATCTAAAAA+AGG - chr1_4:72884714-72884733 None:intergenic 25.0%
!! TTGATTTTTGTGTGTAGAAA+TGG + chr1_4:72884746-72884765 Msa0183900:intron 25.0%
!! TGATTTTTGTGTGTAGAAAT+GGG + chr1_4:72884747-72884766 Msa0183900:intron 25.0%
!! ATAATTTGGTACCTTGTTAT+CGG - chr1_4:72884842-72884861 None:intergenic 25.0%
! TCAAAAAATCATCTCAGAAT+TGG - chr1_4:72884964-72884983 None:intergenic 25.0%
!!! TCTGAGATGATTTTTTGATT+TGG + chr1_4:72884966-72884985 Msa0183900:intron 25.0%
! AGAATTTAAGAAGCTAAAAG+TGG - chr1_4:72885218-72885237 None:intergenic 25.0%
!!! CTTTTAGCTTCTTAAATTCT+TGG + chr1_4:72885218-72885237 Msa0183900:intron 25.0%
!!! GAATTTTGTTTCTTTTACCA+AGG + chr1_4:72885246-72885265 Msa0183900:intron 25.0%
!!! GAACATATTTTTGCTTAATG+TGG + chr1_4:72885272-72885291 Msa0183900:intron 25.0%
! ATTCGATTTCATTGAAACTT+GGG - chr1_4:72885509-72885528 None:intergenic 25.0%
! AATTCGATTTCATTGAAACT+TGG - chr1_4:72885510-72885529 None:intergenic 25.0%
!!! TTTAGTTGATAGCAAAATTG+TGG - chr1_4:72885838-72885857 None:intergenic 25.0%
! CGCTTAAGATAATAATCTAA+AGG + chr1_4:72886093-72886112 Msa0183900:intron 25.0%
!! ATTAGATTAGTTATCTTTGG+AGG - chr1_4:72886129-72886148 None:intergenic 25.0%
! TCCAAAGATAACTAATCTAA+TGG + chr1_4:72886128-72886147 Msa0183900:intron 25.0%
! CCAAAGATAACTAATCTAAT+GGG + chr1_4:72886129-72886148 Msa0183900:intron 25.0%
! TCCAAAGATAACTAATCTAA+GGG + chr1_4:72886128-72886147 Msa0183900:intron 25.0%
! TTAATAAAACGTGAACTTGA+TGG - chr1_4:72886202-72886221 None:intergenic 25.0%
!!! ACATTTAAGTTTTACTGCTA+TGG + chr1_4:72886305-72886324 Msa0183900:intron 25.0%
!!! CTCAAAAGAACTGATTTTAT+CGG + chr1_4:72886410-72886429 Msa0183900:exon 25.0%
! TTTATTTGTAGTTTCGTCAA+TGG + chr1_4:72886541-72886560 Msa0183900:three_prime_UTR 25.0%
! TCACATGCATATAAAATTGT+TGG + chr1_4:72886842-72886861 Msa0183900:three_prime_UTR 25.0%
AAAAAGGATGAAGAAAAAGG+GGG - chr1_4:72884698-72884717 None:intergenic 30.0%
GCAAAAATATGTTCAAACCT+TGG - chr1_4:72885266-72885285 None:intergenic 30.0%
AATTCGATTTCACTGTCATA+TGG + chr1_4:72885346-72885365 Msa0183900:intron 30.0%
! AAGCAACACACTCTTTTTAA+AGG + chr1_4:72885397-72885416 Msa0183900:intron 30.0%
! AGCAACACACTCTTTTTAAA+GGG + chr1_4:72885398-72885417 Msa0183900:intron 30.0%
TAGTTAATGACTAAACAGTG+AGG - chr1_4:72885429-72885448 None:intergenic 30.0%
TAGTTTCACTCGATTTCTAA+AGG - chr1_4:72885535-72885554 None:intergenic 30.0%
AAATCGAGTGAAACTAGAAA+TGG + chr1_4:72885539-72885558 Msa0183900:intron 30.0%
! AATTTATGCTGTACCCTTTT+TGG + chr1_4:72885652-72885671 Msa0183900:intron 30.0%
TTGGTTACTCTTTCCAAAAA+GGG - chr1_4:72885668-72885687 None:intergenic 30.0%
ATTGGTTACTCTTTCCAAAA+AGG - chr1_4:72885669-72885688 None:intergenic 30.0%
AGTTGTGTATAGTGTAAAAG+AGG - chr1_4:72885774-72885793 None:intergenic 30.0%
! TCTTTTACACTATACACAAC+TGG + chr1_4:72885773-72885792 Msa0183900:intron 30.0%
!!! GTATGCTTTAGCACATTTTT+TGG + chr1_4:72885959-72885978 Msa0183900:intron 30.0%
! CCCATTAGATTAGTTATCTT+TGG - chr1_4:72886132-72886151 None:intergenic 30.0%
! CTTAGATTAGTTATCTTTGG+AGG - chr1_4:72886164-72886183 None:intergenic 30.0%
CTCCAAAGATAACTAATCTA+AGG + chr1_4:72886127-72886146 Msa0183900:intron 30.0%
CCAAAGATAACTAATCTAAG+GGG + chr1_4:72886164-72886183 Msa0183900:intron 30.0%
! TTTTACTGCTATGGTGAATT+TGG + chr1_4:72886314-72886333 Msa0183900:intron 30.0%
ATTTGAATGTAGAAACCTGA+TGG + chr1_4:72886385-72886404 Msa0183900:intron 30.0%
TTTGAATGTAGAAACCTGAT+GGG + chr1_4:72886386-72886405 Msa0183900:intron 30.0%
ACATAATGTACCAAACATGA+TGG - chr1_4:72886593-72886612 None:intergenic 30.0%
TCTTGCTAAATAAAAGAGCT+AGG + chr1_4:72886983-72887002 Msa0183900:three_prime_UTR 30.0%
! CTGAATGTAGACGTTTTCTT+TGG - chr1_4:72884664-72884683 None:intergenic 35.0%
CAAAGAAAACGTCTACATTC+AGG + chr1_4:72884662-72884681 Msa0183900:CDS 35.0%
! CCAATTTCTTGCTTCTGAAA+CGG + chr1_4:72884723-72884742 Msa0183900:intron 35.0%
TTGTTATCGGCATTATCTGT+AGG - chr1_4:72884829-72884848 None:intergenic 35.0%
TACAGATAATGCCGATAACA+AGG + chr1_4:72884828-72884847 Msa0183900:CDS 35.0%
AGAATATTGGGAGCTACAAA+AGG - chr1_4:72885153-72885172 None:intergenic 35.0%
!! GCAACACACTCTTTTTAAAG+GGG + chr1_4:72885399-72885418 Msa0183900:intron 35.0%
!! CAACACACTCTTTTTAAAGG+GGG + chr1_4:72885400-72885419 Msa0183900:intron 35.0%
AGTGAAACTAGAAATGGAGT+TGG + chr1_4:72885545-72885564 Msa0183900:intron 35.0%
AACTAGAAATGGAGTTGGAA+TGG + chr1_4:72885550-72885569 Msa0183900:intron 35.0%
AGAGTAACCAATGTTAGACT+TGG + chr1_4:72885677-72885696 Msa0183900:intron 35.0%
GTTAGTACCAAGTCTAACAT+TGG - chr1_4:72885687-72885706 None:intergenic 35.0%
TGTGTATAGTGTAAAAGAGG+TGG - chr1_4:72885771-72885790 None:intergenic 35.0%
TTGTGGAGAGATGAATGTAA+GGG - chr1_4:72885821-72885840 None:intergenic 35.0%
ATTGTGGAGAGATGAATGTA+AGG - chr1_4:72885822-72885841 None:intergenic 35.0%
ATTTGGTTGCAGTCGTTTAA+GGG - chr1_4:72885884-72885903 None:intergenic 35.0%
AATTTGGTTGCAGTCGTTTA+AGG - chr1_4:72885885-72885904 None:intergenic 35.0%
TGTCCATTGCAAATTGTTTG+TGG + chr1_4:72886011-72886030 Msa0183900:intron 35.0%
ATGCCACAAACAATTTGCAA+TGG - chr1_4:72886017-72886036 None:intergenic 35.0%
! CCCCTTAGATTAGTTATCTT+TGG - chr1_4:72886167-72886186 None:intergenic 35.0%
!! ACATGATGGATGCAACTAAA+TGG - chr1_4:72886579-72886598 None:intergenic 35.0%
TTAGTTGCATCCATCATGTT+TGG + chr1_4:72886580-72886599 Msa0183900:three_prime_UTR 35.0%
! CTTCCCTGTGATATTTTACT+GGG + chr1_4:72886625-72886644 Msa0183900:three_prime_UTR 35.0%
ATGTAATGTGAGTTTCACTG+TGG + chr1_4:72886738-72886757 Msa0183900:three_prime_UTR 35.0%
TGGATATTGAGATTCAGTTG+AGG + chr1_4:72886758-72886777 Msa0183900:three_prime_UTR 35.0%
ATATTGAGATTCAGTTGAGG+AGG + chr1_4:72886761-72886780 Msa0183900:three_prime_UTR 35.0%
TATTGAGATTCAGTTGAGGA+GGG + chr1_4:72886762-72886781 Msa0183900:three_prime_UTR 35.0%
TCATGTAGAACTGTTCGATT+TGG + chr1_4:72886934-72886953 Msa0183900:three_prime_UTR 35.0%
! TCAATGGATTCAACATCTCG+TGG + chr1_4:72884582-72884601 Msa0183900:CDS 40.0%
CAAAGGTAAGATTCTTAGCG+AGG + chr1_4:72884629-72884648 Msa0183900:CDS 40.0%
CCGTTTCAGAAGCAAGAAAT+TGG - chr1_4:72884726-72884745 None:intergenic 40.0%
TTTGTGTGTAGAAATGGGAG+AGG + chr1_4:72884752-72884771 Msa0183900:intron 40.0%
TTGTGTGTAGAAATGGGAGA+GGG + chr1_4:72884753-72884772 Msa0183900:intron 40.0%
! ACGTGGTGATGACATAATTC+TGG + chr1_4:72885301-72885320 Msa0183900:intron 40.0%
!! TGACATAATTCTGGAACCTG+TGG + chr1_4:72885310-72885329 Msa0183900:intron 40.0%
ATTCAATGAAACACGACCAC+AGG - chr1_4:72885329-72885348 None:intergenic 40.0%
TCGATTTCACTGTCATATGG+TGG + chr1_4:72885349-72885368 Msa0183900:intron 40.0%
!! AAAAGAGTGTGTTGCTTGCT+AGG - chr1_4:72885394-72885413 None:intergenic 40.0%
! CTACGAACACACTCTTTTGA+AGG + chr1_4:72885450-72885469 Msa0183900:intron 40.0%
!! CACTCTTTTGAAGGTGGATT+TGG + chr1_4:72885459-72885478 Msa0183900:intron 40.0%
!! TTGAAGGTGGATTTGGCTTT+CGG + chr1_4:72885466-72885485 Msa0183900:intron 40.0%
GAAATGGAGTTGGAATGGTA+AGG + chr1_4:72885555-72885574 Msa0183900:intron 40.0%
!! TTTTCTTTCTTTCTGGGGAG+TGG + chr1_4:72885730-72885749 Msa0183900:intron 40.0%
TTCCATGTTGCTGTGAATCA+AGG + chr1_4:72885988-72886007 Msa0183900:intron 40.0%
ACTTAAGGGAAGCAATCATG+AGG + chr1_4:72886453-72886472 Msa0183900:three_prime_UTR 40.0%
CCAGTAAAATATCACAGGGA+AGG - chr1_4:72886627-72886646 None:intergenic 40.0%
! CCTTCCCTGTGATATTTTAC+TGG + chr1_4:72886624-72886643 Msa0183900:three_prime_UTR 40.0%
CAGCCCAGTAAAATATCACA+GGG - chr1_4:72886631-72886650 None:intergenic 40.0%
TCGAAGCTACTCTCAATTCT+AGG + chr1_4:72886801-72886820 Msa0183900:three_prime_UTR 40.0%
TGCATGTGATGTGAGCATTA+GGG - chr1_4:72886831-72886850 None:intergenic 40.0%
ATGCATGTGATGTGAGCATT+AGG - chr1_4:72886832-72886851 None:intergenic 40.0%
CAGTTCTACATGAATCACCT+AGG - chr1_4:72886927-72886946 None:intergenic 40.0%
TGTAGAAATGGGAGAGGGAA+AGG + chr1_4:72884758-72884777 Msa0183900:intron 45.0%
GTTGGAGAAACAGAAGCTAG+CGG + chr1_4:72884780-72884799 Msa0183900:CDS 45.0%
GCTTAATGTGGTATTGCACG+TGG + chr1_4:72885284-72885303 Msa0183900:intron 45.0%
!! CGAACACACTCTTTTGAAGG+TGG + chr1_4:72885453-72885472 Msa0183900:intron 45.0%
CACCTTGATTCACAGCAACA+TGG - chr1_4:72885993-72886012 None:intergenic 45.0%
!! CAGTTCTTTTGAGTCCCATC+AGG - chr1_4:72886403-72886422 None:intergenic 45.0%
TAGCCGTCAAGGTCACTTAA+GGG + chr1_4:72886439-72886458 Msa0183900:three_prime_UTR 45.0%
CTTCCCTTAAGTGACCTTGA+CGG - chr1_4:72886445-72886464 None:intergenic 45.0%
CCAGCCCAGTAAAATATCAC+AGG - chr1_4:72886632-72886651 None:intergenic 45.0%
! CCTGTGATATTTTACTGGGC+TGG + chr1_4:72886629-72886648 Msa0183900:three_prime_UTR 45.0%
!!! ATATTTTACTGGGCTGGCAG+TGG + chr1_4:72886635-72886654 Msa0183900:three_prime_UTR 45.0%
ATTCAGTTGAGGAGGGAGTT+TGG + chr1_4:72886769-72886788 Msa0183900:three_prime_UTR 45.0%
GCATGTGATGTGAGCATTAG+GGG - chr1_4:72886830-72886849 None:intergenic 45.0%
GGAGTCTTAGCTCCAATCTA+AGG + chr1_4:72886897-72886916 Msa0183900:three_prime_UTR 45.0%
! ATGAGATCAGCACTGAGTCG+AGG + chr1_4:72884546-72884565 Msa0183900:CDS 50.0%
! TGAGATCAGCACTGAGTCGA+GGG + chr1_4:72884547-72884566 Msa0183900:CDS 50.0%
AGGGATCGTGACTCGTTCAA+TGG + chr1_4:72884566-72884585 Msa0183900:CDS 50.0%
GCTTCTTCTCGCTTCTTCAG+CGG + chr1_4:72884606-72884625 Msa0183900:CDS 50.0%
GAAATGGGAGAGGGAAAGGT+TGG + chr1_4:72884762-72884781 Msa0183900:intron 50.0%
ACAGAAGCTAGCGGCTGATA+AGG + chr1_4:72884789-72884808 Msa0183900:CDS 50.0%
ATCTGTAGGTTTCTCCGCCT+TGG - chr1_4:72884815-72884834 None:intergenic 50.0%
TGGAGTTGGAATGGTAAGGC+AGG + chr1_4:72885559-72885578 Msa0183900:intron 50.0%
ACAACTGCGCACCATGGTAA+GGG - chr1_4:72886072-72886091 None:intergenic 50.0%
CTAGCCGTCAAGGTCACTTA+AGG + chr1_4:72886438-72886457 Msa0183900:three_prime_UTR 50.0%
! CTCCAATCTAAGGTCAGCCT+AGG + chr1_4:72886907-72886926 Msa0183900:three_prime_UTR 50.0%
CACCTAGGCTGACCTTAGAT+TGG - chr1_4:72886912-72886931 None:intergenic 50.0%
TCTCGCTTCTTCAGCGGCAA+AGG + chr1_4:72884612-72884631 Msa0183900:CDS 55.0%
AATCATCCCCCTGCTGTGCT+TGG - chr1_4:72886047-72886066 None:intergenic 55.0%
GGGATGATTGCCCCTTACCA+TGG + chr1_4:72886058-72886077 Msa0183900:intron 55.0%
CAACTGCGCACCATGGTAAG+GGG - chr1_4:72886071-72886090 None:intergenic 55.0%
CACAACTGCGCACCATGGTA+AGG - chr1_4:72886073-72886092 None:intergenic 55.0%
ATCGGTCTTGCTAGCCGTCA+AGG + chr1_4:72886428-72886447 Msa0183900:three_prime_UTR 55.0%
GCTAGCGGCTGATAAGGCCA+AGG + chr1_4:72884795-72884814 Msa0183900:CDS 60.0%
AGCGGCTGATAAGGCCAAGG+CGG + chr1_4:72884798-72884817 Msa0183900:CDS 60.0%
ATGCGCCTTCCAAGCACAGC+AGG + chr1_4:72886035-72886054 Msa0183900:intron 60.0%
TGCGCCTTCCAAGCACAGCA+GGG + chr1_4:72886036-72886055 Msa0183900:intron 60.0%
ATCCCCCTGCTGTGCTTGGA+AGG - chr1_4:72886043-72886062 None:intergenic 60.0%
AAGCGCACAACTGCGCACCA+TGG - chr1_4:72886078-72886097 None:intergenic 60.0%
GCGCCTTCCAAGCACAGCAG+GGG + chr1_4:72886037-72886056 Msa0183900:intron 65.0%
CGCCTTCCAAGCACAGCAGG+GGG + chr1_4:72886038-72886057 Msa0183900:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72884494 72887014 72884494 ID=Msa0183900;Name=Msa0183900
chr1_4 mRNA 72884494 72887014 72884494 ID=Msa0183900-mRNA-1;Parent=Msa0183900;Name=Msa0183900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|1|1|3|591|85
chr1_4 exon 72884494 72884683 72884494 ID=Msa0183900-mRNA-1:exon:24690;Parent=Msa0183900-mRNA-1
chr1_4 exon 72884763 72884849 72884763 ID=Msa0183900-mRNA-1:exon:24691;Parent=Msa0183900-mRNA-1
chr1_4 exon 72886397 72887014 72886397 ID=Msa0183900-mRNA-1:exon:24692;Parent=Msa0183900-mRNA-1
chr1_4 five_prime_UTR 72884494 72884539 72884494 ID=Msa0183900-mRNA-1:five_prime_utr;Parent=Msa0183900-mRNA-1
chr1_4 CDS 72884540 72884683 72884540 ID=Msa0183900-mRNA-1:cds;Parent=Msa0183900-mRNA-1
chr1_4 CDS 72884763 72884849 72884763 ID=Msa0183900-mRNA-1:cds;Parent=Msa0183900-mRNA-1
chr1_4 CDS 72886397 72886423 72886397 ID=Msa0183900-mRNA-1:cds;Parent=Msa0183900-mRNA-1
chr1_4 three_prime_UTR 72886424 72887014 72886424 ID=Msa0183900-mRNA-1:three_prime_utr;Parent=Msa0183900-mRNA-1
Gene Sequence

>Msa0183900

ATGGCAATGAGATCAGCACTGAGTCGAGGGATCGTGACTCGTTCAATGGATTCAACATCTCGTGGAGCTTCTTCTCGCTTCTTCAGCGGCAAAGGTAAGATTCTTAGCGAGGAAGAACAAGCCAAAGAAAACGTCTACATTCAGAAATGGGAGAGGGAAAGGTTGGAGAAACAGAAGCTAGCGGCTGATAAGGCCAAGGCGGAGAAACCTACAGATAATGCCGATAACAAGAAACCTGATGGGACTCAAAAGAACTGA

Protein sequence

>Msa0183900

MAMRSALSRGIVTRSMDSTSRGASSRFFSGKGKILSEEEQAKENVYIQKWERERLEKQKLAADKAKAEKPTDNADNKKPDGTQKN*