AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0275360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275360 MtrunA17_Chr2g0287391 81.865 193 18 2 1 193 1 176 1.04e-94 276
Msa0275360 MtrunA17_Chr2g0287381 98.413 63 1 0 205 267 1 63 6.81e-39 130
Msa0275360 MtrunA17_Chr2g0286581 43.781 201 93 4 3 203 13 193 4.61e-38 132
Msa0275360 MtrunA17_Chr2g0287311 42.157 204 101 5 1 193 11 208 4.13e-31 115
Msa0275360 MtrunA17_Chr2g0287401 39.896 193 79 4 1 193 1 156 4.38e-27 103
Msa0275360 MtrunA17_Chr2g0287351 57.778 90 37 1 3 92 2 90 6.38e-25 100
Msa0275360 MtrunA17_Chr4g0019961 38.298 188 102 3 4 191 3 176 9.55e-19 81.6
Msa0275360 MtrunA17_Chr2g0287331 54.667 75 33 1 7 81 3 76 9.78e-19 79.7
Msa0275360 MtrunA17_Chr1g0156951 46.465 99 42 2 3 101 2 89 4.45e-18 80.5
Msa0275360 MtrunA17_Chr2g0287321 33.505 194 92 5 4 196 13 170 1.22e-17 78.6
Msa0275360 MtrunA17_Chr2g0287301 35.638 188 77 5 3 190 13 156 3.34e-17 76.6
Msa0275360 MtrunA17_Chr2g0287421 53.333 75 34 1 1 75 1 74 2.68e-16 74.7
Msa0275360 MtrunA17_Chr1g0170131 50.649 77 33 1 3 79 2 73 3.42e-16 75.5
Msa0275360 MtrunA17_Chr5g0420551 46.988 83 43 1 7 89 2 83 1.59e-14 71.2
Msa0275360 MtrunA17_Chr2g0288061 36.702 188 101 4 9 191 11 185 3.63e-13 66.6
Msa0275360 MtrunA17_Chr2g0287371 45.631 103 55 1 1 103 4 105 2.98e-12 64.7
Msa0275360 MtrunA17_Chr2g0287341 62.963 54 17 2 1 54 1 51 1.63e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTGCTTCTTAAGGAATTT+AGG 0.194647 2_3:+7406239 None:intergenic
ATTATGTCAACAATTCTATT+TGG 0.233493 2_3:-7404247 Msa0275360:CDS
GGAGAGTTTGTCACATAATA+AGG 0.235361 2_3:-7404175 Msa0275360:CDS
AAGTAGCCTTTCATTCTTCT+TGG 0.256471 2_3:+7404200 None:intergenic
TTCTGACGTGGATAATCTTT+TGG 0.310646 2_3:-7405937 Msa0275360:CDS
GAATATGAATGTAGCTTCTA+AGG 0.326077 2_3:-7404106 Msa0275360:CDS
ATCCTCCAGTGCTTGGGATT+GGG 0.342543 2_3:+7405860 None:intergenic
GAAGAATGAAAGGCTACTTA+TGG 0.345047 2_3:-7404196 Msa0275360:CDS
TATCCTCCAGTGCTTGGGAT+TGG 0.354112 2_3:+7405859 None:intergenic
TCCGGAAGAACCACCGTGTT+TGG 0.360103 2_3:+7406356 None:intergenic
CGAATTGAAACGGGTGTTGA+TGG 0.362790 2_3:-7405967 Msa0275360:CDS
AGATCTAACCTCCAAGGCTT+TGG 0.383571 2_3:-7406192 Msa0275360:CDS
ATTTCGATTATCAGTTCTTC+CGG 0.390404 2_3:+7406338 None:intergenic
TTTGGAAGAAGATTTAGAAA+TGG 0.411692 2_3:-7404229 Msa0275360:CDS
CATTATATCCTCCAGTGCTT+GGG 0.417270 2_3:+7405854 None:intergenic
TCATTATATCCTCCAGTGCT+TGG 0.419753 2_3:+7405853 None:intergenic
TTGATAACCCAACTCAGGTT+TGG 0.422699 2_3:+7404132 None:intergenic
ACCAAACACGGTGGTTCTTC+CGG 0.423653 2_3:-7406357 Msa0275360:CDS
GAATTCCATCGTTTGCAAAC+GGG 0.440834 2_3:+7406275 None:intergenic
CGAATTCCATCGTTTGCAAA+CGG 0.446779 2_3:+7406274 None:intergenic
TCATTTCCAGAGTTGATTCA+AGG 0.453871 2_3:-7406316 Msa0275360:CDS
AGTTTAGACCAAACCTGAGT+TGG 0.465609 2_3:-7404140 Msa0275360:CDS
GTTTAGACCAAACCTGAGTT+GGG 0.469369 2_3:-7404139 Msa0275360:CDS
AGCTCTGAAAGTGCTTCTTA+AGG 0.482555 2_3:+7406231 None:intergenic
AGCAATGACGGCGGAAGCAA+CGG 0.488849 2_3:-7406387 None:intergenic
GCACTTTCAGAGCTTGTTCA+CGG 0.493716 2_3:-7406222 Msa0275360:CDS
GGACTGTTCCAAAGCCTTGG+AGG 0.494324 2_3:+7406184 None:intergenic
ATCTGTTTAGTTCAAGCGAC+GGG 0.503518 2_3:-7404083 Msa0275360:CDS
TCTTCTTCTTCCTCCTCTTG+AGG 0.507183 2_3:+7406119 None:intergenic
ATTGGACTGTTCCAAAGCCT+TGG 0.508501 2_3:+7406181 None:intergenic
AGTATTCCTTGAATCAACTC+TGG 0.529325 2_3:+7406310 None:intergenic
AGTTTGTCACATAATAAGGA+TGG 0.549319 2_3:-7404171 Msa0275360:CDS
GCAAACCCAATCCCAAGCAC+TGG 0.551500 2_3:-7405865 Msa0275360:CDS
TCAATTTGATAACCCAACTC+AGG 0.557378 2_3:+7404127 None:intergenic
AAGAAGATTTAGAAATGGAA+AGG 0.567041 2_3:-7404224 Msa0275360:CDS
CAAGGAATACTCTGCAACTG+AGG 0.574910 2_3:-7406298 Msa0275360:CDS
CGCGGTCATGCCTCAAGAGG+AGG 0.582975 2_3:-7406129 Msa0275360:CDS
AAAGGTCCAAGAAGAATGAA+AGG 0.591888 2_3:-7404206 Msa0275360:CDS
AACCCAATCCCAAGCACTGG+AGG 0.597028 2_3:-7405862 Msa0275360:CDS
TTCAAGCGACGGGAAAGTGA+GGG 0.601245 2_3:-7404073 Msa0275360:CDS
GTTCAAGCGACGGGAAAGTG+AGG 0.608237 2_3:-7404074 Msa0275360:CDS
AACGGCGGTGTCACCAAACA+CGG 0.611937 2_3:-7406369 Msa0275360:CDS
TGAGGCCCGTTTGCAAACGA+TGG 0.616269 2_3:-7406280 Msa0275360:CDS
GTTTGTCACATAATAAGGAT+GGG 0.619352 2_3:-7404170 Msa0275360:CDS
TAACGCGGTCATGCCTCAAG+AGG 0.630152 2_3:-7406132 Msa0275360:CDS
ATGTTGCGATATGAAAGCAT+TGG 0.637121 2_3:+7406163 None:intergenic
GATCTGTTTAGTTCAAGCGA+CGG 0.639457 2_3:-7404084 Msa0275360:CDS
CATCAAAGATCTAACCTCCA+AGG 0.641038 2_3:-7406198 Msa0275360:CDS
AATGACGGCGGAAGCAACGG+CGG 0.652409 2_3:-7406384 Msa0275360:CDS
GATGGATTTAGTTTCTGACG+TGG 0.707895 2_3:-7405949 Msa0275360:CDS
CTTAACGAGAGCAATGACGG+CGG 0.742276 2_3:-7406396 None:intergenic
ATTGGGTTTGCATATCAACG+TGG 0.746293 2_3:+7405877 None:intergenic
GGCGGTGTCACCAAACACGG+TGG 0.758113 2_3:-7406366 Msa0275360:CDS
GCAACATATTATAAATAACG+CGG 0.783690 2_3:-7406147 Msa0275360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATATATAGTAAGAAT+CGG + chr2_3:7405486-7405505 None:intergenic 10.0%
!!! ATTCTTACTATATATTTTAA+TGG - chr2_3:7405486-7405505 Msa0275360:intron 10.0%
!!! TTCTTACTATATATTTTAAT+GGG - chr2_3:7405487-7405506 Msa0275360:intron 10.0%
!! ATTTATTTGATTATCTAATA+TGG - chr2_3:7405611-7405630 Msa0275360:intron 10.0%
!! TTAAAATATATAGTAAGAAT+CGG + chr2_3:7405486-7405505 None:intergenic 10.0%
!!! ATTCTTACTATATATTTTAA+TGG - chr2_3:7405486-7405505 Msa0275360:intron 10.0%
!!! TTCTTACTATATATTTTAAT+GGG - chr2_3:7405487-7405506 Msa0275360:intron 10.0%
!! ATTTATTTGATTATCTAATA+TGG - chr2_3:7405611-7405630 Msa0275360:intron 10.0%
!!! TTTATTTTGATTCATAATGT+TGG - chr2_3:7405129-7405148 Msa0275360:intron 15.0%
!!! ATCTGAGTTATTTAATTTTT+AGG - chr2_3:7405882-7405901 Msa0275360:CDS 15.0%
!!! TTTATTTTGATTCATAATGT+TGG - chr2_3:7405129-7405148 Msa0275360:intron 15.0%
!!! ATCTGAGTTATTTAATTTTT+AGG - chr2_3:7405882-7405901 Msa0275360:CDS 15.0%
!!! TTAATCTGAAATTACAATGA+AGG - chr2_3:7404746-7404765 Msa0275360:intron 20.0%
!!! TTAGAGATTTTGATGTTATT+GGG - chr2_3:7404773-7404792 Msa0275360:intron 20.0%
!!! TTTGAGTATGTTATTTTGAT+TGG - chr2_3:7405001-7405020 Msa0275360:intron 20.0%
!! AAATTAAAGGAAAAGAGAAT+GGG + chr2_3:7405168-7405187 None:intergenic 20.0%
!! TGTAAAATTATTTACAGTTG+CGG - chr2_3:7405513-7405532 Msa0275360:intron 20.0%
!!! GTAAAAATGACATTCTAAAA+TGG + chr2_3:7405554-7405573 None:intergenic 20.0%
!!! TTTTAGAATGTCATTTTTAC+TGG - chr2_3:7405554-7405573 Msa0275360:intron 20.0%
!! ATTATGTCAACAATTCTATT+TGG - chr2_3:7406177-7406196 Msa0275360:CDS 20.0%
!!! TTAATCTGAAATTACAATGA+AGG - chr2_3:7404746-7404765 Msa0275360:intron 20.0%
!!! TTAGAGATTTTGATGTTATT+GGG - chr2_3:7404773-7404792 Msa0275360:intron 20.0%
!!! TTTGAGTATGTTATTTTGAT+TGG - chr2_3:7405001-7405020 Msa0275360:intron 20.0%
!! AAATTAAAGGAAAAGAGAAT+GGG + chr2_3:7405168-7405187 None:intergenic 20.0%
!! TGTAAAATTATTTACAGTTG+CGG - chr2_3:7405513-7405532 Msa0275360:intron 20.0%
!!! GTAAAAATGACATTCTAAAA+TGG + chr2_3:7405554-7405573 None:intergenic 20.0%
!!! TTTTAGAATGTCATTTTTAC+TGG - chr2_3:7405554-7405573 Msa0275360:intron 20.0%
!! ATTATGTCAACAATTCTATT+TGG - chr2_3:7406177-7406196 Msa0275360:CDS 20.0%
! GCAACATATTATAAATAACG+CGG - chr2_3:7404277-7404296 Msa0275360:intron 25.0%
! AAGAAAAAGACGAATTGAAA+CGG - chr2_3:7404447-7404466 Msa0275360:intron 25.0%
!! ATAATCTTTTGGTGAATCTT+CGG - chr2_3:7404498-7404517 Msa0275360:intron 25.0%
!!! GTTAGAGATTTTGATGTTAT+TGG - chr2_3:7404772-7404791 Msa0275360:intron 25.0%
! CTCAAATTGTTGTAAATGAA+TGG - chr2_3:7404819-7404838 Msa0275360:intron 25.0%
!!! GAATGGATTAATTAGTTGAA+TGG - chr2_3:7404836-7404855 Msa0275360:intron 25.0%
!!! CGTTTCTTGCTATATTTTAA+TGG - chr2_3:7404933-7404952 Msa0275360:intron 25.0%
! TGTAAAATTATTTGCAGTTG+TGG - chr2_3:7404960-7404979 Msa0275360:intron 25.0%
! GGTAAAATTATTTGCTCAAA+TGG - chr2_3:7405056-7405075 Msa0275360:intron 25.0%
! GAAATTAAAGGAAAAGAGAA+TGG + chr2_3:7405169-7405188 None:intergenic 25.0%
!!! ATTAGTGTTTTTGATGCTAT+TGG - chr2_3:7405686-7405705 Msa0275360:intron 25.0%
!!! TTAGTGTTTTTGATGCTATT+GGG - chr2_3:7405687-7405706 Msa0275360:intron 25.0%
! CTCAAATGGTTGTAAATTAA+TGG - chr2_3:7405733-7405752 Msa0275360:intron 25.0%
! GAGACTCAAATATTAAAACT+AGG + chr2_3:7405991-7406010 None:intergenic 25.0%
! TCTTTACTATTTGAGTGTTT+GGG + chr2_3:7406013-7406032 None:intergenic 25.0%
! ATCTTTACTATTTGAGTGTT+TGG + chr2_3:7406014-7406033 None:intergenic 25.0%
! CACTCAAATAGTAAAGATAA+AGG - chr2_3:7406016-7406035 Msa0275360:CDS 25.0%
! ATTGTGCAATTTAACAATTG+AGG - chr2_3:7406110-7406129 Msa0275360:CDS 25.0%
! TTTGGAAGAAGATTTAGAAA+TGG - chr2_3:7406195-7406214 Msa0275360:CDS 25.0%
! AAGAAGATTTAGAAATGGAA+AGG - chr2_3:7406200-7406219 Msa0275360:CDS 25.0%
! GCAACATATTATAAATAACG+CGG - chr2_3:7404277-7404296 Msa0275360:intron 25.0%
! AAGAAAAAGACGAATTGAAA+CGG - chr2_3:7404447-7404466 Msa0275360:intron 25.0%
!! ATAATCTTTTGGTGAATCTT+CGG - chr2_3:7404498-7404517 Msa0275360:intron 25.0%
!!! GTTAGAGATTTTGATGTTAT+TGG - chr2_3:7404772-7404791 Msa0275360:intron 25.0%
! CTCAAATTGTTGTAAATGAA+TGG - chr2_3:7404819-7404838 Msa0275360:intron 25.0%
!!! GAATGGATTAATTAGTTGAA+TGG - chr2_3:7404836-7404855 Msa0275360:intron 25.0%
!!! CGTTTCTTGCTATATTTTAA+TGG - chr2_3:7404933-7404952 Msa0275360:intron 25.0%
! TGTAAAATTATTTGCAGTTG+TGG - chr2_3:7404960-7404979 Msa0275360:intron 25.0%
! GGTAAAATTATTTGCTCAAA+TGG - chr2_3:7405056-7405075 Msa0275360:intron 25.0%
! GAAATTAAAGGAAAAGAGAA+TGG + chr2_3:7405169-7405188 None:intergenic 25.0%
!!! ATTAGTGTTTTTGATGCTAT+TGG - chr2_3:7405686-7405705 Msa0275360:intron 25.0%
!!! TTAGTGTTTTTGATGCTATT+GGG - chr2_3:7405687-7405706 Msa0275360:intron 25.0%
! CTCAAATGGTTGTAAATTAA+TGG - chr2_3:7405733-7405752 Msa0275360:intron 25.0%
! GAGACTCAAATATTAAAACT+AGG + chr2_3:7405991-7406010 None:intergenic 25.0%
! TCTTTACTATTTGAGTGTTT+GGG + chr2_3:7406013-7406032 None:intergenic 25.0%
! ATCTTTACTATTTGAGTGTT+TGG + chr2_3:7406014-7406033 None:intergenic 25.0%
! CACTCAAATAGTAAAGATAA+AGG - chr2_3:7406016-7406035 Msa0275360:CDS 25.0%
! ATTGTGCAATTTAACAATTG+AGG - chr2_3:7406110-7406129 Msa0275360:CDS 25.0%
! TTTGGAAGAAGATTTAGAAA+TGG - chr2_3:7406195-7406214 Msa0275360:CDS 25.0%
! AAGAAGATTTAGAAATGGAA+AGG - chr2_3:7406200-7406219 Msa0275360:CDS 25.0%
ATTTCGATTATCAGTTCTTC+CGG + chr2_3:7404089-7404108 None:intergenic 30.0%
AAGTGCTTCTTAAGGAATTT+AGG + chr2_3:7404188-7404207 None:intergenic 30.0%
AGAAAAAGACGAATTGAAAC+GGG - chr2_3:7404448-7404467 Msa0275360:intron 30.0%
AAGACAAACTCTGAATTAAG+AGG + chr2_3:7404654-7404673 None:intergenic 30.0%
!!! TTTTGAAATGTTGCAACTAC+TGG - chr2_3:7404681-7404700 Msa0275360:intron 30.0%
GGTTATCTGATTGTCTTATA+TGG - chr2_3:7404702-7404721 Msa0275360:intron 30.0%
TCTTTGACCTGATAATATGT+TGG - chr2_3:7404885-7404904 Msa0275360:intron 30.0%
!! ATATGTTGGCTTCTTCTTAT+TGG - chr2_3:7404899-7404918 Msa0275360:intron 30.0%
! CTTATGTGTGTTTTACTTCT+AGG - chr2_3:7405094-7405113 Msa0275360:intron 30.0%
TTACATAGGAGACTAAACAT+GGG + chr2_3:7405193-7405212 None:intergenic 30.0%
ATTACATAGGAGACTAAACA+TGG + chr2_3:7405194-7405213 None:intergenic 30.0%
AATCATGATCCTCATTACAT+AGG + chr2_3:7405207-7405226 None:intergenic 30.0%
! ACTTCCTCAAATTGTTATTG+TGG - chr2_3:7405296-7405315 Msa0275360:intron 30.0%
CATTCCACAATAACAATTTG+AGG + chr2_3:7405303-7405322 None:intergenic 30.0%
!! GTTAGTGATTTTGATGCTAT+CGG - chr2_3:7405322-7405341 Msa0275360:intron 30.0%
!! TTAGTGATTTTGATGCTATC+GGG - chr2_3:7405323-7405342 Msa0275360:intron 30.0%
TCTTTGACCTGATAATACAT+TGG - chr2_3:7405436-7405455 Msa0275360:intron 30.0%
!! TAGTGTTTTTGATGCTATTG+GGG - chr2_3:7405688-7405707 Msa0275360:intron 30.0%
CGGATAAAAATGACATAACA+GGG + chr2_3:7405812-7405831 None:intergenic 30.0%
ACGGATAAAAATGACATAAC+AGG + chr2_3:7405813-7405832 None:intergenic 30.0%
ATCCGTGTTTCACATAATAA+AGG - chr2_3:7405827-7405846 Msa0275360:intron 30.0%
TCCGTGTTTCACATAATAAA+GGG - chr2_3:7405828-7405847 Msa0275360:intron 30.0%
ACTAGGATACTAACTACATA+GGG + chr2_3:7405974-7405993 None:intergenic 30.0%
AACTAGGATACTAACTACAT+AGG + chr2_3:7405975-7405994 None:intergenic 30.0%
TACGATACTTGAGTGATTAA+AGG - chr2_3:7406150-7406169 Msa0275360:CDS 30.0%
ATACTTGAGTGATTAAAGGT+GGG - chr2_3:7406154-7406173 Msa0275360:CDS 30.0%
AGTTTGTCACATAATAAGGA+TGG - chr2_3:7406253-7406272 Msa0275360:CDS 30.0%
GTTTGTCACATAATAAGGAT+GGG - chr2_3:7406254-7406273 Msa0275360:CDS 30.0%
GAATATGAATGTAGCTTCTA+AGG - chr2_3:7406318-7406337 Msa0275360:CDS 30.0%
ATTTCGATTATCAGTTCTTC+CGG + chr2_3:7404089-7404108 None:intergenic 30.0%
AAGTGCTTCTTAAGGAATTT+AGG + chr2_3:7404188-7404207 None:intergenic 30.0%
AGAAAAAGACGAATTGAAAC+GGG - chr2_3:7404448-7404467 Msa0275360:intron 30.0%
AAGACAAACTCTGAATTAAG+AGG + chr2_3:7404654-7404673 None:intergenic 30.0%
!!! TTTTGAAATGTTGCAACTAC+TGG - chr2_3:7404681-7404700 Msa0275360:intron 30.0%
GGTTATCTGATTGTCTTATA+TGG - chr2_3:7404702-7404721 Msa0275360:intron 30.0%
TCTTTGACCTGATAATATGT+TGG - chr2_3:7404885-7404904 Msa0275360:intron 30.0%
!! ATATGTTGGCTTCTTCTTAT+TGG - chr2_3:7404899-7404918 Msa0275360:intron 30.0%
! CTTATGTGTGTTTTACTTCT+AGG - chr2_3:7405094-7405113 Msa0275360:intron 30.0%
TTACATAGGAGACTAAACAT+GGG + chr2_3:7405193-7405212 None:intergenic 30.0%
ATTACATAGGAGACTAAACA+TGG + chr2_3:7405194-7405213 None:intergenic 30.0%
AATCATGATCCTCATTACAT+AGG + chr2_3:7405207-7405226 None:intergenic 30.0%
! ACTTCCTCAAATTGTTATTG+TGG - chr2_3:7405296-7405315 Msa0275360:intron 30.0%
CATTCCACAATAACAATTTG+AGG + chr2_3:7405303-7405322 None:intergenic 30.0%
!! GTTAGTGATTTTGATGCTAT+CGG - chr2_3:7405322-7405341 Msa0275360:intron 30.0%
!! TTAGTGATTTTGATGCTATC+GGG - chr2_3:7405323-7405342 Msa0275360:intron 30.0%
TCTTTGACCTGATAATACAT+TGG - chr2_3:7405436-7405455 Msa0275360:intron 30.0%
!! TAGTGTTTTTGATGCTATTG+GGG - chr2_3:7405688-7405707 Msa0275360:intron 30.0%
CGGATAAAAATGACATAACA+GGG + chr2_3:7405812-7405831 None:intergenic 30.0%
ACGGATAAAAATGACATAAC+AGG + chr2_3:7405813-7405832 None:intergenic 30.0%
ATCCGTGTTTCACATAATAA+AGG - chr2_3:7405827-7405846 Msa0275360:intron 30.0%
TCCGTGTTTCACATAATAAA+GGG - chr2_3:7405828-7405847 Msa0275360:intron 30.0%
ACTAGGATACTAACTACATA+GGG + chr2_3:7405974-7405993 None:intergenic 30.0%
AACTAGGATACTAACTACAT+AGG + chr2_3:7405975-7405994 None:intergenic 30.0%
TACGATACTTGAGTGATTAA+AGG - chr2_3:7406150-7406169 Msa0275360:CDS 30.0%
ATACTTGAGTGATTAAAGGT+GGG - chr2_3:7406154-7406173 Msa0275360:CDS 30.0%
AGTTTGTCACATAATAAGGA+TGG - chr2_3:7406253-7406272 Msa0275360:CDS 30.0%
GTTTGTCACATAATAAGGAT+GGG - chr2_3:7406254-7406273 Msa0275360:CDS 30.0%
GAATATGAATGTAGCTTCTA+AGG - chr2_3:7406318-7406337 Msa0275360:CDS 30.0%
! TCATTTCCAGAGTTGATTCA+AGG - chr2_3:7404108-7404127 Msa0275360:CDS 35.0%
AGTATTCCTTGAATCAACTC+TGG + chr2_3:7404117-7404136 None:intergenic 35.0%
! ATGTTGCGATATGAAAGCAT+TGG + chr2_3:7404264-7404283 None:intergenic 35.0%
! TTCTGACGTGGATAATCTTT+TGG - chr2_3:7404487-7404506 Msa0275360:intron 35.0%
GAAGAAGCCAACATATTATC+AGG + chr2_3:7404895-7404914 None:intergenic 35.0%
CTAAACATGGGGGAAATTAA+AGG + chr2_3:7405181-7405200 None:intergenic 35.0%
TACATAGGAGACTAAACATG+GGG + chr2_3:7405192-7405211 None:intergenic 35.0%
GTTTAGTCTCCTATGTAATG+AGG - chr2_3:7405195-7405214 Msa0275360:intron 35.0%
TGTGTACCATTGAAAGATGA+AGG - chr2_3:7405257-7405276 Msa0275360:intron 35.0%
! CTTTTGCCTTCATCTTTCAA+TGG + chr2_3:7405266-7405285 None:intergenic 35.0%
GAAGAAGCCAATGTATTATC+AGG + chr2_3:7405446-7405465 None:intergenic 35.0%
!! ATACATTGGCTTCTTCTTGT+TGG - chr2_3:7405450-7405469 Msa0275360:intron 35.0%
TCAATTCAACATGAAGCAAC+AGG - chr2_3:7405649-7405668 Msa0275360:intron 35.0%
CCCCTTTATTATGTGAAACA+CGG + chr2_3:7405832-7405851 None:intergenic 35.0%
CCGTGTTTCACATAATAAAG+GGG - chr2_3:7405829-7405848 Msa0275360:intron 35.0%
ACTACATAGGGGACAAAAAA+GGG + chr2_3:7405962-7405981 None:intergenic 35.0%
AACTACATAGGGGACAAAAA+AGG + chr2_3:7405963-7405982 None:intergenic 35.0%
CTAGGATACTAACTACATAG+GGG + chr2_3:7405973-7405992 None:intergenic 35.0%
GATACTTGAGTGATTAAAGG+TGG - chr2_3:7406153-7406172 Msa0275360:CDS 35.0%
AAAGGTCCAAGAAGAATGAA+AGG - chr2_3:7406218-7406237 Msa0275360:CDS 35.0%
AAGTAGCCTTTCATTCTTCT+TGG + chr2_3:7406227-7406246 None:intergenic 35.0%
GAAGAATGAAAGGCTACTTA+TGG - chr2_3:7406228-7406247 Msa0275360:CDS 35.0%
GGAGAGTTTGTCACATAATA+AGG - chr2_3:7406249-7406268 Msa0275360:CDS 35.0%
! TCAATTTGATAACCCAACTC+AGG + chr2_3:7406300-7406319 None:intergenic 35.0%
!! AAAGTGAGGGATTTTAATGG+AGG - chr2_3:7406364-7406383 Msa0275360:CDS 35.0%
!! AAGTGAGGGATTTTAATGGA+GGG - chr2_3:7406365-7406384 Msa0275360:CDS 35.0%
! TCATTTCCAGAGTTGATTCA+AGG - chr2_3:7404108-7404127 Msa0275360:CDS 35.0%
AGTATTCCTTGAATCAACTC+TGG + chr2_3:7404117-7404136 None:intergenic 35.0%
! ATGTTGCGATATGAAAGCAT+TGG + chr2_3:7404264-7404283 None:intergenic 35.0%
! TTCTGACGTGGATAATCTTT+TGG - chr2_3:7404487-7404506 Msa0275360:intron 35.0%
GAAGAAGCCAACATATTATC+AGG + chr2_3:7404895-7404914 None:intergenic 35.0%
CTAAACATGGGGGAAATTAA+AGG + chr2_3:7405181-7405200 None:intergenic 35.0%
TACATAGGAGACTAAACATG+GGG + chr2_3:7405192-7405211 None:intergenic 35.0%
GTTTAGTCTCCTATGTAATG+AGG - chr2_3:7405195-7405214 Msa0275360:intron 35.0%
TGTGTACCATTGAAAGATGA+AGG - chr2_3:7405257-7405276 Msa0275360:intron 35.0%
! CTTTTGCCTTCATCTTTCAA+TGG + chr2_3:7405266-7405285 None:intergenic 35.0%
GAAGAAGCCAATGTATTATC+AGG + chr2_3:7405446-7405465 None:intergenic 35.0%
!! ATACATTGGCTTCTTCTTGT+TGG - chr2_3:7405450-7405469 Msa0275360:intron 35.0%
TCAATTCAACATGAAGCAAC+AGG - chr2_3:7405649-7405668 Msa0275360:intron 35.0%
CCCCTTTATTATGTGAAACA+CGG + chr2_3:7405832-7405851 None:intergenic 35.0%
CCGTGTTTCACATAATAAAG+GGG - chr2_3:7405829-7405848 Msa0275360:intron 35.0%
ACTACATAGGGGACAAAAAA+GGG + chr2_3:7405962-7405981 None:intergenic 35.0%
AACTACATAGGGGACAAAAA+AGG + chr2_3:7405963-7405982 None:intergenic 35.0%
CTAGGATACTAACTACATAG+GGG + chr2_3:7405973-7405992 None:intergenic 35.0%
GATACTTGAGTGATTAAAGG+TGG - chr2_3:7406153-7406172 Msa0275360:CDS 35.0%
AAAGGTCCAAGAAGAATGAA+AGG - chr2_3:7406218-7406237 Msa0275360:CDS 35.0%
AAGTAGCCTTTCATTCTTCT+TGG + chr2_3:7406227-7406246 None:intergenic 35.0%
GAAGAATGAAAGGCTACTTA+TGG - chr2_3:7406228-7406247 Msa0275360:CDS 35.0%
GGAGAGTTTGTCACATAATA+AGG - chr2_3:7406249-7406268 Msa0275360:CDS 35.0%
! TCAATTTGATAACCCAACTC+AGG + chr2_3:7406300-7406319 None:intergenic 35.0%
!! AAAGTGAGGGATTTTAATGG+AGG - chr2_3:7406364-7406383 Msa0275360:CDS 35.0%
!! AAGTGAGGGATTTTAATGGA+GGG - chr2_3:7406365-7406384 Msa0275360:CDS 35.0%
GAATTCCATCGTTTGCAAAC+GGG + chr2_3:7404152-7404171 None:intergenic 40.0%
CGAATTCCATCGTTTGCAAA+CGG + chr2_3:7404153-7404172 None:intergenic 40.0%
!! AGCTCTGAAAGTGCTTCTTA+AGG + chr2_3:7404196-7404215 None:intergenic 40.0%
CATCAAAGATCTAACCTCCA+AGG - chr2_3:7404226-7404245 Msa0275360:CDS 40.0%
! GATGGATTTAGTTTCTGACG+TGG - chr2_3:7404475-7404494 Msa0275360:intron 40.0%
ATTGGGTTTGCATATCAACG+TGG + chr2_3:7404550-7404569 None:intergenic 40.0%
CATTATATCCTCCAGTGCTT+GGG + chr2_3:7404573-7404592 None:intergenic 40.0%
TCATTATATCCTCCAGTGCT+TGG + chr2_3:7404574-7404593 None:intergenic 40.0%
TGCAAACTCATTTGCACTTG+TGG - chr2_3:7405035-7405054 Msa0275360:intron 40.0%
! AAAGAGAATGGGTTTGCACA+AGG + chr2_3:7405157-7405176 None:intergenic 40.0%
ACATAGGAGACTAAACATGG+GGG + chr2_3:7405191-7405210 None:intergenic 40.0%
ATTGGGGTTGTGTTCAGATA+TGG - chr2_3:7405704-7405723 Msa0275360:intron 40.0%
AGATATGGTTCTCGCTCAAA+TGG - chr2_3:7405719-7405738 Msa0275360:intron 40.0%
TGAAGAAGTAAACGCACAAG+TGG + chr2_3:7405856-7405875 None:intergenic 40.0%
TACATAGGGGACAAAAAAGG+GGG + chr2_3:7405960-7405979 None:intergenic 40.0%
CTACATAGGGGACAAAAAAG+GGG + chr2_3:7405961-7405980 None:intergenic 40.0%
! AAAAAGCGCACAATCGCAAT+TGG - chr2_3:7406040-7406059 Msa0275360:CDS 40.0%
AATTAGAGCTTATCGTGCGA+TGG - chr2_3:7406068-7406087 Msa0275360:CDS 40.0%
ATTAGAGCTTATCGTGCGAT+GGG - chr2_3:7406069-7406088 Msa0275360:CDS 40.0%
AGTTTAGACCAAACCTGAGT+TGG - chr2_3:7406284-7406303 Msa0275360:CDS 40.0%
GTTTAGACCAAACCTGAGTT+GGG - chr2_3:7406285-7406304 Msa0275360:CDS 40.0%
! TTGATAACCCAACTCAGGTT+TGG + chr2_3:7406295-7406314 None:intergenic 40.0%
! GATCTGTTTAGTTCAAGCGA+CGG - chr2_3:7406340-7406359 Msa0275360:CDS 40.0%
! ATCTGTTTAGTTCAAGCGAC+GGG - chr2_3:7406341-7406360 Msa0275360:CDS 40.0%
! GGGAAAGTGAGGGATTTTAA+TGG - chr2_3:7406361-7406380 Msa0275360:CDS 40.0%
!! AGTGAGGGATTTTAATGGAG+GGG - chr2_3:7406366-7406385 Msa0275360:CDS 40.0%
GAATTCCATCGTTTGCAAAC+GGG + chr2_3:7404152-7404171 None:intergenic 40.0%
CGAATTCCATCGTTTGCAAA+CGG + chr2_3:7404153-7404172 None:intergenic 40.0%
!! AGCTCTGAAAGTGCTTCTTA+AGG + chr2_3:7404196-7404215 None:intergenic 40.0%
CATCAAAGATCTAACCTCCA+AGG - chr2_3:7404226-7404245 Msa0275360:CDS 40.0%
! GATGGATTTAGTTTCTGACG+TGG - chr2_3:7404475-7404494 Msa0275360:intron 40.0%
ATTGGGTTTGCATATCAACG+TGG + chr2_3:7404550-7404569 None:intergenic 40.0%
CATTATATCCTCCAGTGCTT+GGG + chr2_3:7404573-7404592 None:intergenic 40.0%
TCATTATATCCTCCAGTGCT+TGG + chr2_3:7404574-7404593 None:intergenic 40.0%
TGCAAACTCATTTGCACTTG+TGG - chr2_3:7405035-7405054 Msa0275360:intron 40.0%
! AAAGAGAATGGGTTTGCACA+AGG + chr2_3:7405157-7405176 None:intergenic 40.0%
ACATAGGAGACTAAACATGG+GGG + chr2_3:7405191-7405210 None:intergenic 40.0%
ATTGGGGTTGTGTTCAGATA+TGG - chr2_3:7405704-7405723 Msa0275360:intron 40.0%
AGATATGGTTCTCGCTCAAA+TGG - chr2_3:7405719-7405738 Msa0275360:intron 40.0%
TGAAGAAGTAAACGCACAAG+TGG + chr2_3:7405856-7405875 None:intergenic 40.0%
TACATAGGGGACAAAAAAGG+GGG + chr2_3:7405960-7405979 None:intergenic 40.0%
CTACATAGGGGACAAAAAAG+GGG + chr2_3:7405961-7405980 None:intergenic 40.0%
! AAAAAGCGCACAATCGCAAT+TGG - chr2_3:7406040-7406059 Msa0275360:CDS 40.0%
AATTAGAGCTTATCGTGCGA+TGG - chr2_3:7406068-7406087 Msa0275360:CDS 40.0%
ATTAGAGCTTATCGTGCGAT+GGG - chr2_3:7406069-7406088 Msa0275360:CDS 40.0%
AGTTTAGACCAAACCTGAGT+TGG - chr2_3:7406284-7406303 Msa0275360:CDS 40.0%
GTTTAGACCAAACCTGAGTT+GGG - chr2_3:7406285-7406304 Msa0275360:CDS 40.0%
! TTGATAACCCAACTCAGGTT+TGG + chr2_3:7406295-7406314 None:intergenic 40.0%
! GATCTGTTTAGTTCAAGCGA+CGG - chr2_3:7406340-7406359 Msa0275360:CDS 40.0%
! ATCTGTTTAGTTCAAGCGAC+GGG - chr2_3:7406341-7406360 Msa0275360:CDS 40.0%
! GGGAAAGTGAGGGATTTTAA+TGG - chr2_3:7406361-7406380 Msa0275360:CDS 40.0%
!! AGTGAGGGATTTTAATGGAG+GGG - chr2_3:7406366-7406385 Msa0275360:CDS 40.0%
CAAGGAATACTCTGCAACTG+AGG - chr2_3:7404126-7404145 Msa0275360:CDS 45.0%
! GCACTTTCAGAGCTTGTTCA+CGG - chr2_3:7404202-7404221 Msa0275360:CDS 45.0%
AGATCTAACCTCCAAGGCTT+TGG - chr2_3:7404232-7404251 Msa0275360:CDS 45.0%
ATTGGACTGTTCCAAAGCCT+TGG + chr2_3:7404246-7404265 None:intergenic 45.0%
TCTTCTTCTTCCTCCTCTTG+AGG + chr2_3:7404308-7404327 None:intergenic 45.0%
!! CGAATTGAAACGGGTGTTGA+TGG - chr2_3:7404457-7404476 Msa0275360:intron 45.0%
TTAGAGCTTATCGTGCGATG+GGG - chr2_3:7406070-7406089 Msa0275360:CDS 45.0%
TCGTGCGATGGGGAAAAATT+AGG - chr2_3:7406080-7406099 Msa0275360:CDS 45.0%
CGTGCGATGGGGAAAAATTA+GGG - chr2_3:7406081-7406100 Msa0275360:CDS 45.0%
CAAGGAATACTCTGCAACTG+AGG - chr2_3:7404126-7404145 Msa0275360:CDS 45.0%
! GCACTTTCAGAGCTTGTTCA+CGG - chr2_3:7404202-7404221 Msa0275360:CDS 45.0%
AGATCTAACCTCCAAGGCTT+TGG - chr2_3:7404232-7404251 Msa0275360:CDS 45.0%
ATTGGACTGTTCCAAAGCCT+TGG + chr2_3:7404246-7404265 None:intergenic 45.0%
TCTTCTTCTTCCTCCTCTTG+AGG + chr2_3:7404308-7404327 None:intergenic 45.0%
!! CGAATTGAAACGGGTGTTGA+TGG - chr2_3:7404457-7404476 Msa0275360:intron 45.0%
TTAGAGCTTATCGTGCGATG+GGG - chr2_3:7406070-7406089 Msa0275360:CDS 45.0%
TCGTGCGATGGGGAAAAATT+AGG - chr2_3:7406080-7406099 Msa0275360:CDS 45.0%
CGTGCGATGGGGAAAAATTA+GGG - chr2_3:7406081-7406100 Msa0275360:CDS 45.0%
ACCAAACACGGTGGTTCTTC+CGG - chr2_3:7404067-7404086 Msa0275360:CDS 50.0%
ATCCTCCAGTGCTTGGGATT+GGG + chr2_3:7404567-7404586 None:intergenic 50.0%
TATCCTCCAGTGCTTGGGAT+TGG + chr2_3:7404568-7404587 None:intergenic 50.0%
TTCAAGCGACGGGAAAGTGA+GGG - chr2_3:7406351-7406370 Msa0275360:CDS 50.0%
!! GAGGGATTTTAATGGAGGGG+AGG - chr2_3:7406369-7406388 Msa0275360:CDS 50.0%
ACCAAACACGGTGGTTCTTC+CGG - chr2_3:7404067-7404086 Msa0275360:CDS 50.0%
ATCCTCCAGTGCTTGGGATT+GGG + chr2_3:7404567-7404586 None:intergenic 50.0%
TATCCTCCAGTGCTTGGGAT+TGG + chr2_3:7404568-7404587 None:intergenic 50.0%
TTCAAGCGACGGGAAAGTGA+GGG - chr2_3:7406351-7406370 Msa0275360:CDS 50.0%
!! GAGGGATTTTAATGGAGGGG+AGG - chr2_3:7406369-7406388 Msa0275360:CDS 50.0%
!! AACGGCGGTGTCACCAAACA+CGG - chr2_3:7404055-7404074 Msa0275360:CDS 55.0%
TCCGGAAGAACCACCGTGTT+TGG + chr2_3:7404071-7404090 None:intergenic 55.0%
TGAGGCCCGTTTGCAAACGA+TGG - chr2_3:7404144-7404163 Msa0275360:CDS 55.0%
GGACTGTTCCAAAGCCTTGG+AGG + chr2_3:7404243-7404262 None:intergenic 55.0%
TAACGCGGTCATGCCTCAAG+AGG - chr2_3:7404292-7404311 Msa0275360:intron 55.0%
GCAAACCCAATCCCAAGCAC+TGG - chr2_3:7404559-7404578 Msa0275360:intron 55.0%
!! AACCCAATCCCAAGCACTGG+AGG - chr2_3:7404562-7404581 Msa0275360:intron 55.0%
GTTCAAGCGACGGGAAAGTG+AGG - chr2_3:7406350-7406369 Msa0275360:CDS 55.0%
!! AACGGCGGTGTCACCAAACA+CGG - chr2_3:7404055-7404074 Msa0275360:CDS 55.0%
TCCGGAAGAACCACCGTGTT+TGG + chr2_3:7404071-7404090 None:intergenic 55.0%
TGAGGCCCGTTTGCAAACGA+TGG - chr2_3:7404144-7404163 Msa0275360:CDS 55.0%
GGACTGTTCCAAAGCCTTGG+AGG + chr2_3:7404243-7404262 None:intergenic 55.0%
TAACGCGGTCATGCCTCAAG+AGG - chr2_3:7404292-7404311 Msa0275360:intron 55.0%
GCAAACCCAATCCCAAGCAC+TGG - chr2_3:7404559-7404578 Msa0275360:intron 55.0%
!! AACCCAATCCCAAGCACTGG+AGG - chr2_3:7404562-7404581 Msa0275360:intron 55.0%
GTTCAAGCGACGGGAAAGTG+AGG - chr2_3:7406350-7406369 Msa0275360:CDS 55.0%
!! GGCGGTGTCACCAAACACGG+TGG - chr2_3:7404058-7404077 Msa0275360:CDS 65.0%
CGCGGTCATGCCTCAAGAGG+AGG - chr2_3:7404295-7404314 Msa0275360:intron 65.0%
!! GGCGGTGTCACCAAACACGG+TGG - chr2_3:7404058-7404077 Msa0275360:CDS 65.0%
CGCGGTCATGCCTCAAGAGG+AGG - chr2_3:7404295-7404314 Msa0275360:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 7404041 7406405 7404041 ID=Msa0275360;Name=Msa0275360
chr2_3 mRNA 7404041 7406405 7404041 ID=Msa0275360-mRNA-1;Parent=Msa0275360;Name=Msa0275360-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0|0.5|2|0|267
chr2_3 exon 7405836 7406405 7405836 ID=Msa0275360-mRNA-1:exon:3449;Parent=Msa0275360-mRNA-1
chr2_3 exon 7404041 7404274 7404041 ID=Msa0275360-mRNA-1:exon:3448;Parent=Msa0275360-mRNA-1
chr2_3 CDS 7405836 7406405 7405836 ID=Msa0275360-mRNA-1:cds;Parent=Msa0275360-mRNA-1
chr2_3 CDS 7404041 7404274 7404041 ID=Msa0275360-mRNA-1:cds;Parent=Msa0275360-mRNA-1
Gene Sequence

>Msa0275360

ATGACGGCGGAAGCAACGGCGGTGTCACCAAACACGGTGGTTCTTCCGGAAGAACTGATAATCGAAATCATTTCCAGAGTTGATTCAAGGAATACTCTGCAACTGAGGCCCGTTTGCAAACGATGGAATTCGCTTATTACTGATCCTAAATTCCTTAAGAAGCACTTTCAGAGCTTGTTCACGGACATCAAAGATCTAACCTCCAAGGCTTTGGAACAGTCCAATGCTTTCATATCGCAACATATTATAAATAACGCGGTCATGCCTCAAGAGGAGGAAGAAGAAGATGCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCTGCTGTTGTTGAAGAAGAAGATGTTGTTGTTGCTGCTGTTGATGAAGAAGAAGATGTTGCTGCTGTTGATGAAGAAAAAGACGAATTGAAACGGGTGTTGATGGATTTAGTTTCTGACGTGGATAATCTTTTGGTGAATCTTCGGTTTATCAAAGACAATACAGAAACTATCCACGTTGATATGCAAACCCAATCCCAAGCACTGGAGGATATAATGAAGTGTTTTCGAAGCTTTGTGGGATTATGTCAACAATTCTATTTGGAAGAAGATTTAGAAATGGAAAGGTCCAAGAAGAATGAAAGGCTACTTATGGAGAGTTTGTCACATAATAAGGATGGGTGTTTAGAGTTTAGACCAAACCTGAGTTGGGTTATCAAATTGAATATGAATGTAGCTTCTAAGGATCTGTTTAGTTCAAGCGACGGGAAAGTGAGGGATTTTAATGGAGGGGAGGTGAAATGCTGCTGA

Protein sequence

>Msa0275360

MTAEATAVSPNTVVLPEELIIEIISRVDSRNTLQLRPVCKRWNSLITDPKFLKKHFQSLFTDIKDLTSKALEQSNAFISQHIINNAVMPQEEEEEDAEEEEEEEEEEEEEDAAVVEEEDVVVAAVDEEEDVAAVDEEKDELKRVLMDLVSDVDNLLVNLRFIKDNTETIHVDMQTQSQALEDIMKCFRSFVGLCQQFYLEEDLEMERSKKNERLLMESLSHNKDGCLEFRPNLSWVIKLNMNVASKDLFSSSDGKVRDFNGGEVKCC*