Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612720 | XP_013457051.1 | 98.371 | 491 | 8 | 0 | 1 | 491 | 1 | 491 | 0.0 | 986 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612720 | sp|Q9ZPH2|GRS17_ARATH | 72.617 | 493 | 128 | 4 | 1 | 491 | 1 | 488 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612720 | G7ZZ90 | 98.371 | 491 | 8 | 0 | 1 | 491 | 1 | 491 | 0.0 | 986 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0612720 | 0.800402 | 1.466081e-48 | -8.615850e-47 |
| Msa0010500 | Msa0612720 | 0.805701 | 1.175786e-49 | -8.615850e-47 |
| Msa0020390 | Msa0612720 | 0.832177 | 1.096932e-55 | -8.615850e-47 |
| Msa0029260 | Msa0612720 | 0.834565 | 2.784480e-56 | -8.615850e-47 |
| Msa0035130 | Msa0612720 | 0.805182 | 1.510216e-49 | -8.615850e-47 |
| Msa0036540 | Msa0612720 | 0.800748 | 1.246231e-48 | -8.615850e-47 |
| Msa0072420 | Msa0612720 | 0.807846 | 4.140570e-50 | -8.615850e-47 |
| Msa0090520 | Msa0612720 | 0.801315 | 9.539959e-49 | -8.615850e-47 |
| Msa0093010 | Msa0612720 | 0.802225 | 6.206419e-49 | -8.615850e-47 |
| Msa0103790 | Msa0612720 | 0.803634 | 3.174118e-49 | -8.615850e-47 |
| Msa0115370 | Msa0612720 | 0.803107 | 4.082663e-49 | -8.615850e-47 |
| Msa0119900 | Msa0612720 | 0.822988 | 1.763798e-53 | -8.615850e-47 |
| Msa0603570 | Msa0612720 | 0.803831 | 2.889591e-49 | -8.615850e-47 |
| Msa0607690 | Msa0612720 | 0.835433 | 1.682830e-56 | -8.615850e-47 |
| Msa0612720 | Msa0615580 | 0.848656 | 5.333356e-60 | -8.615850e-47 |
| Msa0612720 | Msa0615680 | 0.818562 | 1.837078e-52 | -8.615850e-47 |
| Msa0612720 | Msa0642970 | 0.800881 | 1.170427e-48 | -8.615850e-47 |
| Msa0612720 | Msa0643320 | 0.805530 | 1.277018e-49 | -8.615850e-47 |
| Msa0612720 | Msa0669720 | 0.827026 | 1.963616e-54 | -8.615850e-47 |
| Msa0612720 | Msa0669760 | 0.817574 | 3.073322e-52 | -8.615850e-47 |
| Msa0612720 | Msa0672100 | 0.813967 | 1.957633e-51 | -8.615850e-47 |
| Msa0612720 | Msa0675000 | 0.805043 | 1.615050e-49 | -8.615850e-47 |
| Msa0612720 | Msa0748920 | 0.800031 | 1.743622e-48 | -8.615850e-47 |
| Msa0612720 | Msa0751010 | 0.822509 | 2.281099e-53 | -8.615850e-47 |
| Msa0612720 | Msa0794050 | 0.828403 | 9.167807e-55 | -8.615850e-47 |
| Msa0612720 | Msa0800370 | 0.845582 | 3.712724e-59 | -8.615850e-47 |
| Msa0612720 | Msa0818770 | 0.821852 | 3.238458e-53 | -8.615850e-47 |
| Msa0612720 | Msa0826500 | 0.816263 | 6.050132e-52 | -8.615850e-47 |
| Msa0612720 | Msa0833190 | -0.830820 | 2.368175e-55 | -8.615850e-47 |
| Msa0612720 | Msa0879850 | 0.803021 | 4.252595e-49 | -8.615850e-47 |
| Msa0612720 | Msa0887250 | 0.810254 | 1.263075e-50 | -8.615850e-47 |
| Msa0612720 | Msa0923780 | 0.802055 | 6.728080e-49 | -8.615850e-47 |
| Msa0612720 | Msa0933380 | 0.835032 | 2.124374e-56 | -8.615850e-47 |
| Msa0612720 | Msa0944200 | 0.825896 | 3.649507e-54 | -8.615850e-47 |
| Msa0612720 | Msa0944610 | 0.831892 | 1.290157e-55 | -8.615850e-47 |
| Msa0612720 | Msa0958000 | 0.825226 | 5.260193e-54 | -8.615850e-47 |
| Msa0612720 | Msa0971160 | 0.829427 | 5.180193e-55 | -8.615850e-47 |
| Msa0612720 | Msa0974950 | 0.833287 | 5.816048e-56 | -8.615850e-47 |
| Msa0612720 | Msa0997430 | 0.812490 | 4.130999e-51 | -8.615850e-47 |
| Msa0612720 | Msa1019240 | 0.809992 | 1.438323e-50 | -8.615850e-47 |
| Msa0612720 | Msa1019260 | 0.807288 | 5.438704e-50 | -8.615850e-47 |
| Msa0612720 | Msa1021520 | 0.803561 | 3.286817e-49 | -8.615850e-47 |
| Msa0612720 | Msa1029050 | 0.805035 | 1.621338e-49 | -8.615850e-47 |
| Msa0612720 | Msa1042480 | 0.806884 | 6.623274e-50 | -8.615850e-47 |
| Msa0612720 | Msa1070390 | 0.807060 | 6.078189e-50 | -8.615850e-47 |
| Msa0612720 | Msa1104210 | 0.811871 | 5.635865e-51 | -8.615850e-47 |
| Msa0612720 | Msa1125790 | -0.815139 | 1.077092e-51 | -8.615850e-47 |
| Msa0612720 | Msa1126830 | 0.817798 | 2.735247e-52 | -8.615850e-47 |
| Msa0612720 | Msa1131560 | 0.803439 | 3.484196e-49 | -8.615850e-47 |
| Msa0612720 | Msa1165780 | 0.859691 | 3.470374e-63 | -8.615850e-47 |
| Msa0612720 | Msa1166870 | 0.821050 | 4.961607e-53 | -8.615850e-47 |
| Msa0612720 | Msa1200320 | 0.833846 | 4.217290e-56 | -8.615850e-47 |
| Msa0612720 | Msa1211830 | 0.828043 | 1.119668e-54 | -8.615850e-47 |
| Msa0612720 | Msa1254730 | 0.805938 | 1.048202e-49 | -8.615850e-47 |
| Msa0612720 | Msa1262890 | 0.838504 | 2.765755e-57 | -8.615850e-47 |
| Msa0612720 | Msa1264210 | 0.812851 | 3.443247e-51 | -8.615850e-47 |
| Msa0612720 | Msa1278900 | 0.807552 | 4.779699e-50 | -8.615850e-47 |
| Msa0612720 | Msa1296830 | 0.853380 | 2.482420e-61 | -8.615850e-47 |
| Msa0612720 | Msa1299700 | 0.801598 | 8.350063e-49 | -8.615850e-47 |
| Msa0612720 | Msa1303580 | 0.821968 | 3.044450e-53 | -8.615850e-47 |
| Msa0612720 | Msa1332590 | 0.808046 | 3.753585e-50 | -8.615850e-47 |
| Msa0612720 | Msa1336560 | 0.848460 | 6.045247e-60 | -8.615850e-47 |
| Msa0612720 | Msa1342630 | 0.802107 | 6.561693e-49 | -8.615850e-47 |
| Msa0612720 | Msa1351540 | 0.867475 | 1.331537e-65 | -8.615850e-47 |
| Msa0612720 | Msa1352890 | 0.801132 | 1.040212e-48 | -8.615850e-47 |
| Msa0612720 | Msa1376650 | 0.809215 | 2.112521e-50 | -8.615850e-47 |
| Msa0612720 | Msa1422810 | 0.800131 | 1.664420e-48 | -8.615850e-47 |
| Msa0612720 | Msa1433600 | 0.808573 | 2.898792e-50 | -8.615850e-47 |
| Msa0612720 | Msa1447180 | 0.812525 | 4.058325e-51 | -8.615850e-47 |
| Msa0612720 | Msa1454450 | 0.823096 | 1.664849e-53 | -8.615850e-47 |
| Msa0612720 | Msa1454680 | 0.828666 | 7.919345e-55 | -8.615850e-47 |
| Msa0612720 | Msa1458090 | 0.805298 | 1.428153e-49 | -8.615850e-47 |
| Msa0612720 | Msa1459960 | 0.830697 | 2.538504e-55 | -8.615850e-47 |
| Msa0612720 | Msa1465260 | 0.822413 | 2.400957e-53 | -8.615850e-47 |
| Msa0121820 | Msa0612720 | 0.810233 | 1.276499e-50 | -8.615850e-47 |
| Msa0123510 | Msa0612720 | 0.803199 | 3.907700e-49 | -8.615850e-47 |
| Msa0136120 | Msa0612720 | 0.807481 | 4.950339e-50 | -8.615850e-47 |
| Msa0150260 | Msa0612720 | 0.812282 | 4.586123e-51 | -8.615850e-47 |
| Msa0169300 | Msa0612720 | 0.831002 | 2.136081e-55 | -8.615850e-47 |
| Msa0183870 | Msa0612720 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0183900 | Msa0612720 | 0.800492 | 1.405357e-48 | -8.615850e-47 |
| Msa0188350 | Msa0612720 | 0.802502 | 5.443148e-49 | -8.615850e-47 |
| Msa0190120 | Msa0612720 | 0.817681 | 2.906865e-52 | -8.615850e-47 |
| Msa0191080 | Msa0612720 | 0.814937 | 1.194350e-51 | -8.615850e-47 |
| Msa0206690 | Msa0612720 | 0.834426 | 3.018595e-56 | -8.615850e-47 |
| Msa0207670 | Msa0612720 | 0.838152 | 3.407131e-57 | -8.615850e-47 |
| Msa0209350 | Msa0612720 | 0.823323 | 1.473218e-53 | -8.615850e-47 |
| Msa0209500 | Msa0612720 | 0.840432 | 8.727502e-58 | -8.615850e-47 |
| Msa0231100 | Msa0612720 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0365860 | Msa0612720 | 0.832434 | 9.474536e-56 | -8.615850e-47 |
| Msa0384880 | Msa0612720 | 0.800790 | 1.221403e-48 | -8.615850e-47 |
| Msa0385500 | Msa0612720 | 0.823361 | 1.443575e-53 | -8.615850e-47 |
| Msa0419720 | Msa0612720 | 0.818130 | 2.301270e-52 | -8.615850e-47 |
| Msa0423750 | Msa0612720 | 0.809789 | 1.590351e-50 | -8.615850e-47 |
| Msa0427860 | Msa0612720 | -0.804565 | 2.032353e-49 | -8.615850e-47 |
| Msa0443390 | Msa0612720 | 0.831491 | 1.619888e-55 | -8.615850e-47 |
| Msa0443430 | Msa0612720 | 0.813015 | 3.170212e-51 | -8.615850e-47 |
| Msa0474090 | Msa0612720 | -0.800710 | 1.268552e-48 | -8.615850e-47 |
| Msa0244980 | Msa0612720 | 0.813438 | 2.559699e-51 | -8.615850e-47 |
| Msa0249580 | Msa0612720 | 0.827156 | 1.828266e-54 | -8.615850e-47 |
| Msa0257490 | Msa0612720 | 0.819608 | 1.062191e-52 | -8.615850e-47 |
| Msa0262480 | Msa0612720 | 0.802632 | 5.117087e-49 | -8.615850e-47 |
| Msa0269470 | Msa0612720 | 0.809210 | 2.117780e-50 | -8.615850e-47 |
| Msa0271890 | Msa0612720 | 0.805968 | 1.033100e-49 | -8.615850e-47 |
| Msa0275360 | Msa0612720 | 0.801732 | 7.837358e-49 | -8.615850e-47 |
| Msa0281530 | Msa0612720 | 0.804284 | 2.325608e-49 | -8.615850e-47 |
| Msa0283420 | Msa0612720 | 0.810219 | 1.285310e-50 | -8.615850e-47 |
| Msa0296790 | Msa0612720 | 0.806013 | 1.010662e-49 | -8.615850e-47 |
| Msa0304590 | Msa0612720 | 0.811983 | 5.327755e-51 | -8.615850e-47 |
| Msa0304660 | Msa0612720 | 0.823862 | 1.101852e-53 | -8.615850e-47 |
| Msa0310860 | Msa0612720 | 0.805901 | 1.067032e-49 | -8.615850e-47 |
| Msa0320590 | Msa0612720 | 0.806705 | 7.225449e-50 | -8.615850e-47 |
| Msa0321690 | Msa0612720 | 0.814371 | 1.593945e-51 | -8.615850e-47 |
| Msa0331700 | Msa0612720 | 0.823204 | 1.571116e-53 | -8.615850e-47 |
| Msa0357900 | Msa0612720 | 0.811600 | 6.454704e-51 | -8.615850e-47 |
| Msa0506400 | Msa0612720 | 0.825047 | 5.798808e-54 | -8.615850e-47 |
| Msa0511770 | Msa0612720 | 0.831231 | 1.876580e-55 | -8.615850e-47 |
| Msa0524590 | Msa0612720 | 0.805176 | 1.514807e-49 | -8.615850e-47 |
| Msa0531650 | Msa0612720 | 0.823463 | 1.366449e-53 | -8.615850e-47 |
| Msa0534900 | Msa0612720 | 0.807482 | 4.947119e-50 | -8.615850e-47 |
| Msa0540550 | Msa0612720 | 0.823244 | 1.537806e-53 | -8.615850e-47 |
| Msa0542560 | Msa0612720 | 0.808716 | 2.701131e-50 | -8.615850e-47 |
| Msa0581110 | Msa0612720 | 0.816177 | 6.324864e-52 | -8.615850e-47 |
| Msa0588260 | Msa0612720 | 0.812002 | 5.277492e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612720 | MtrunA17_Chr4g0047431 | 98.371 | 491 | 8 | 0 | 1 | 491 | 1 | 491 | 0.0 | 986 |
| Msa0612720 | MtrunA17_Chr2g0332591 | 43.200 | 125 | 71 | 0 | 259 | 383 | 29 | 153 | 1.59e-29 | 113 |
| Msa0612720 | MtrunA17_Chr2g0332591 | 46.535 | 101 | 54 | 0 | 154 | 254 | 53 | 153 | 5.17e-29 | 112 |
| Msa0612720 | MtrunA17_Chr2g0332591 | 47.826 | 92 | 47 | 1 | 400 | 491 | 63 | 153 | 3.65e-25 | 101 |
| Msa0612720 | MtrunA17_Chr4g0006981 | 49.123 | 114 | 51 | 2 | 147 | 253 | 199 | 312 | 9.11e-27 | 110 |
| Msa0612720 | MtrunA17_Chr4g0006981 | 33.854 | 192 | 103 | 10 | 312 | 485 | 122 | 307 | 1.25e-21 | 95.5 |
| Msa0612720 | MtrunA17_Chr4g0006981 | 39.423 | 104 | 60 | 1 | 277 | 377 | 204 | 307 | 5.41e-19 | 87.8 |
| Msa0612720 | MtrunA17_Chr8g0393201 | 33.333 | 111 | 70 | 1 | 3 | 109 | 227 | 337 | 9.38e-14 | 72.4 |
| Msa0612720 | MtrunA17_Chr2g0280411 | 33.708 | 89 | 59 | 0 | 14 | 102 | 24 | 112 | 1.17e-13 | 67.8 |
| Msa0612720 | MtrunA17_Chr7g0216481 | 34.568 | 81 | 53 | 0 | 24 | 104 | 51 | 131 | 1.62e-12 | 64.7 |
| Msa0612720 | MtrunA17_Chr1g0155721 | 31.132 | 106 | 69 | 1 | 3 | 104 | 6 | 111 | 1.68e-12 | 64.3 |
| Msa0612720 | MtrunA17_Chr2g0319291 | 34.831 | 89 | 58 | 0 | 23 | 111 | 34 | 122 | 1.94e-12 | 64.3 |
| Msa0612720 | MtrunA17_Chr3g0142051 | 33.735 | 83 | 55 | 0 | 24 | 106 | 31 | 113 | 4.86e-12 | 62.8 |
| Msa0612720 | MtrunA17_Chr8g0334481 | 27.778 | 108 | 74 | 2 | 2 | 105 | 25 | 132 | 3.81e-11 | 60.8 |
| Msa0612720 | MtrunA17_Chr7g0245141 | 28.571 | 112 | 76 | 1 | 2 | 109 | 23 | 134 | 5.35e-11 | 60.5 |
| Msa0612720 | MtrunA17_Chr4g0042051 | 30.208 | 96 | 67 | 0 | 16 | 111 | 27 | 122 | 5.46e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612720 | AT4G04950.1 | 72.617 | 493 | 128 | 4 | 1 | 491 | 1 | 488 | 0.0 | 726 |
| Msa0612720 | AT4G32580.1 | 64.242 | 165 | 48 | 3 | 1 | 164 | 1 | 155 | 1.22e-66 | 212 |
| Msa0612720 | AT3G54900.1 | 56.863 | 102 | 44 | 0 | 278 | 379 | 64 | 165 | 1.18e-31 | 120 |
| Msa0612720 | AT3G54900.1 | 52.000 | 100 | 48 | 0 | 151 | 250 | 66 | 165 | 5.85e-29 | 112 |
| Msa0612720 | AT3G54900.1 | 52.632 | 95 | 44 | 1 | 392 | 486 | 71 | 164 | 4.99e-26 | 104 |
| Msa0612720 | AT3G15660.2 | 45.370 | 108 | 59 | 0 | 147 | 254 | 56 | 163 | 1.34e-28 | 111 |
| Msa0612720 | AT3G15660.2 | 45.192 | 104 | 57 | 0 | 280 | 383 | 60 | 163 | 1.93e-27 | 108 |
| Msa0612720 | AT3G15660.2 | 42.157 | 102 | 58 | 1 | 390 | 491 | 63 | 163 | 1.60e-24 | 100 |
| Msa0612720 | AT3G15660.1 | 45.370 | 108 | 59 | 0 | 147 | 254 | 56 | 163 | 1.34e-28 | 111 |
| Msa0612720 | AT3G15660.1 | 45.192 | 104 | 57 | 0 | 280 | 383 | 60 | 163 | 1.93e-27 | 108 |
| Msa0612720 | AT3G15660.1 | 42.157 | 102 | 58 | 1 | 390 | 491 | 63 | 163 | 1.60e-24 | 100 |
| Msa0612720 | AT2G38270.1 | 46.018 | 113 | 54 | 2 | 147 | 252 | 180 | 292 | 1.19e-26 | 109 |
| Msa0612720 | AT2G38270.1 | 46.429 | 112 | 53 | 3 | 382 | 490 | 186 | 293 | 2.56e-24 | 103 |
| Msa0612720 | AT2G38270.1 | 40.367 | 109 | 62 | 1 | 277 | 382 | 185 | 293 | 1.14e-21 | 95.5 |
| Msa0612720 | AT3G17880.2 | 33.636 | 110 | 69 | 1 | 3 | 108 | 263 | 372 | 6.37e-14 | 73.6 |
| Msa0612720 | AT3G17880.1 | 33.636 | 110 | 69 | 1 | 3 | 108 | 270 | 379 | 6.54e-14 | 73.6 |
| Msa0612720 | AT1G11530.1 | 37.805 | 82 | 51 | 0 | 21 | 102 | 24 | 105 | 3.96e-13 | 66.6 |
| Msa0612720 | AT3G56420.1 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.68e-13 | 66.6 |
| Msa0612720 | AT3G56420.2 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.68e-13 | 66.6 |
| Msa0612720 | AT3G56420.3 | 36.170 | 94 | 60 | 0 | 13 | 106 | 54 | 147 | 7.68e-13 | 66.6 |
| Msa0612720 | AT2G40790.2 | 33.333 | 96 | 64 | 0 | 11 | 106 | 52 | 147 | 2.22e-12 | 65.5 |
| Msa0612720 | AT2G40790.1 | 33.333 | 96 | 64 | 0 | 11 | 106 | 52 | 147 | 2.22e-12 | 65.5 |
| Msa0612720 | AT1G19730.1 | 33.333 | 96 | 63 | 1 | 13 | 107 | 20 | 115 | 2.88e-11 | 61.2 |
| Msa0612720 | AT1G45145.1 | 27.778 | 108 | 69 | 1 | 5 | 112 | 20 | 118 | 3.28e-11 | 60.8 |
| Msa0612720 | AT3G51030.1 | 30.435 | 92 | 64 | 0 | 13 | 104 | 20 | 111 | 3.31e-11 | 60.8 |
Find 146 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGGTGGTGCTTCACTTC+TGG | 0.087525 | 4_2:-61227783 | Msa0612720:CDS |
| CTGTTAATTCTTAGAATAAT+TGG | 0.105084 | 4_2:-61224991 | Msa0612720:three_prime_UTR |
| GCTGAGGGTATTGTTAATTT+TGG | 0.185655 | 4_2:-61224942 | Msa0612720:three_prime_UTR |
| CGTATATTAAAGCTTTATTT+TGG | 0.207804 | 4_2:-61227926 | Msa0612720:five_prime_UTR |
| TTGGTTATATAGGGAGAATT+AGG | 0.211245 | 4_2:-61227907 | Msa0612720:five_prime_UTR |
| CGATCTTCAATGGTCTCTTT+TGG | 0.228425 | 4_2:+61225311 | None:intergenic |
| TCATCATCATCGAGAGAAAA+TGG | 0.232309 | 4_2:-61227866 | Msa0612720:exon |
| TCCGGTGGTGCTTCACTTCT+GGG | 0.239526 | 4_2:-61227782 | Msa0612720:CDS |
| TTTCTGCTAAATCCACATTT+TGG | 0.245986 | 4_2:+61225935 | None:intergenic |
| TGAGGTGAGACAGGGGATTA+AGG | 0.268053 | 4_2:-61225138 | Msa0612720:CDS |
| GCATGAGAGTGGGGAGTTAA+AGG | 0.272046 | 4_2:-61225747 | Msa0612720:CDS |
| CTGGAAAGCTTGGTCAATTC+AGG | 0.285616 | 4_2:-61225608 | Msa0612720:CDS |
| GAGGAGGGTGTGGTGGATTT+TGG | 0.308068 | 4_2:-61225185 | Msa0612720:CDS |
| CCCTCATACCCATTTCTTAA+GGG | 0.316341 | 4_2:-61227698 | Msa0612720:intron |
| GATATATAGTTGAGGATAAC+TGG | 0.318174 | 4_2:+61225424 | None:intergenic |
| GAAACAAATATAACAGATTC+AGG | 0.318310 | 4_2:-61225689 | Msa0612720:CDS |
| AAACCGCATCTTGGAGCATC+TGG | 0.332380 | 4_2:+61225236 | None:intergenic |
| AAGGAAGAGAAGGTTAAGTT+TGG | 0.337919 | 4_2:-61225896 | Msa0612720:CDS |
| AAGTGATGATGAGGTGAGAC+AGG | 0.342056 | 4_2:-61225147 | Msa0612720:CDS |
| GGATTAAGGTATTCTCAAAT+TGG | 0.345844 | 4_2:-61225124 | Msa0612720:CDS |
| TCCCTCATACCCATTTCTTA+AGG | 0.350830 | 4_2:-61227699 | Msa0612720:CDS |
| GAAGAGTTGGTCCATGTGTT+TGG | 0.361641 | 4_2:+61227741 | None:intergenic |
| ATTATGGAGCTGCGAAATAA+TGG | 0.375569 | 4_2:-61225047 | Msa0612720:CDS |
| CTGAGGAAATGTGGGCCAAT+TGG | 0.383188 | 4_2:+61225820 | None:intergenic |
| TGGTTATATAGGGAGAATTA+GGG | 0.383575 | 4_2:-61227906 | Msa0612720:five_prime_UTR |
| AAAACCGAACCCTTAAGAAA+TGG | 0.386272 | 4_2:+61227689 | None:intergenic |
| ACCTTGTTGGCTAAACTTGA+TGG | 0.387462 | 4_2:+61226190 | None:intergenic |
| TGTTAATTCTTAGAATAATT+GGG | 0.393222 | 4_2:-61224990 | Msa0612720:three_prime_UTR |
| TTTCTTCAAACGATCTTCAA+TGG | 0.395624 | 4_2:+61225301 | None:intergenic |
| CTCAGTTATGCTGTTTATGA+AGG | 0.400437 | 4_2:-61225585 | Msa0612720:CDS |
| TCTATATACTGTTTGATATG+AGG | 0.403515 | 4_2:-61224873 | Msa0612720:three_prime_UTR |
| GCCGCTTCTCCTGCTAGTCT+TGG | 0.404417 | 4_2:-61226133 | Msa0612720:CDS |
| CAGAAAACTTTACATGAGAA+AGG | 0.407675 | 4_2:-61225341 | Msa0612720:CDS |
| AAACCACACTTAGGTTCATC+TGG | 0.410689 | 4_2:+61225557 | None:intergenic |
| GACTCGAGGTTTATTCAAAC+TGG | 0.417021 | 4_2:-61225448 | Msa0612720:CDS |
| TACTGCAAAGGAGAACTTGT+TGG | 0.433798 | 4_2:-61225794 | Msa0612720:CDS |
| CCCTTCATGAAGAGCATCAC+AGG | 0.434696 | 4_2:+61225263 | None:intergenic |
| AGGTGGTTGTGATATCATTA+TGG | 0.435007 | 4_2:-61225063 | Msa0612720:CDS |
| AGAAAACTTTACATGAGAAA+GGG | 0.438785 | 4_2:-61225340 | Msa0612720:CDS |
| CCCTGTGATGCTCTTCATGA+AGG | 0.447763 | 4_2:-61225264 | Msa0612720:CDS |
| CCGCTTCTCCTGCTAGTCTT+GGG | 0.449817 | 4_2:-61226132 | Msa0612720:CDS |
| AGCCTCTCGGCTGGAAAGCT+TGG | 0.460278 | 4_2:-61225618 | Msa0612720:CDS |
| ACCCTTAAGAAATGGGTATG+AGG | 0.465816 | 4_2:+61227697 | None:intergenic |
| AATAAACCTCGAGTCCTTGT+CGG | 0.467389 | 4_2:+61225456 | None:intergenic |
| GCAATATATAGAAGCAAAAG+AGG | 0.473114 | 4_2:+61224819 | None:intergenic |
| AAACCGAACCCTTAAGAAAT+GGG | 0.473857 | 4_2:+61227690 | None:intergenic |
| TTATCCTCAACTATATATCA+AGG | 0.480228 | 4_2:-61225420 | Msa0612720:CDS |
| TGAGTACAAATTTAGCCTCT+CGG | 0.483522 | 4_2:-61225631 | Msa0612720:CDS |
| TTCAGTTGACTACTAAGCCC+TGG | 0.486626 | 4_2:+61226025 | None:intergenic |
| TCGAGAGAAAATGGGTGGTT+CGG | 0.487809 | 4_2:-61227857 | Msa0612720:exon |
| GGTGGTTCGTGGCGGTTCTC+CGG | 0.491409 | 4_2:-61227800 | Msa0612720:CDS |
| CGCCCTTCGAGAGGAGGGTG+TGG | 0.494304 | 4_2:-61225195 | Msa0612720:CDS |
| CTGGAACTAAAACCGCATCT+TGG | 0.495657 | 4_2:+61225227 | None:intergenic |
| GCTAGTCTTGGGATGGCCGC+AGG | 0.498693 | 4_2:-61226121 | Msa0612720:CDS |
| AACCTAAGTGTGGTTTCAGC+AGG | 0.498764 | 4_2:-61225550 | Msa0612720:CDS |
| AACCGCATCTTGGAGCATCT+GGG | 0.499723 | 4_2:+61225237 | None:intergenic |
| CGTGAATTCAAAGTCGGAGT+TGG | 0.501506 | 4_2:-61227827 | Msa0612720:CDS |
| TGCTTCACTTCTGGGCGTCA+TGG | 0.501679 | 4_2:-61227774 | Msa0612720:CDS |
| GAATAAGCCTCGGATATCTC+TGG | 0.508311 | 4_2:+61227561 | None:intergenic |
| GCGGCCATCCCAAGACTAGC+AGG | 0.516474 | 4_2:+61226124 | None:intergenic |
| CATCATCATCGAGAGAAAAT+GGG | 0.521224 | 4_2:-61227865 | Msa0612720:exon |
| TGTTATATTTGTTTCATCAA+CGG | 0.521323 | 4_2:+61225697 | None:intergenic |
| GAAGAGCATCACAGGGGAAG+AGG | 0.521960 | 4_2:+61225271 | None:intergenic |
| TACAAATTTAGCCTCTCGGC+TGG | 0.523434 | 4_2:-61225627 | Msa0612720:CDS |
| CCTTTCATGAAAAGCAAGAC+AGG | 0.524095 | 4_2:+61225971 | None:intergenic |
| GCCCAGAAGTGAAGCACCAC+CGG | 0.524542 | 4_2:+61227781 | None:intergenic |
| TCCATCAAGTTTAGCCAACA+AGG | 0.525625 | 4_2:-61226191 | Msa0612720:CDS |
| TTCTCCTGCTAGTCTTGGGA+TGG | 0.527299 | 4_2:-61226128 | Msa0612720:CDS |
| AGATTTAGAGATGCCACCCT+TGG | 0.527838 | 4_2:+61225661 | None:intergenic |
| TGGCTAAGTGAGAGAAGAGT+TGG | 0.528504 | 4_2:+61227728 | None:intergenic |
| GTAGCAGGCTCAATTAACTC+TGG | 0.529527 | 4_2:-61226160 | Msa0612720:CDS |
| AACAAGGTTTCAAAAGTAGC+AGG | 0.531530 | 4_2:-61226175 | Msa0612720:CDS |
| TCGAAGGGCGTTTACAACTC+TGG | 0.534132 | 4_2:+61225208 | None:intergenic |
| CCCTTAAGAAATGGGTATGA+GGG | 0.534349 | 4_2:+61227698 | None:intergenic |
| GCAGTAAAGCTGAGGAAATG+TGG | 0.537101 | 4_2:+61225811 | None:intergenic |
| TTTCCTCAGCTTTACTGCAA+AGG | 0.540810 | 4_2:-61225806 | Msa0612720:CDS |
| AGAATGTCAAAACTCTCAAA+CGG | 0.542425 | 4_2:+61225494 | None:intergenic |
| CTCGGATTCAGAGGTTCGTG+AGG | 0.545103 | 4_2:-61225858 | Msa0612720:CDS |
| TACTACAAAGGTGAGCTGAT+AGG | 0.545331 | 4_2:-61225083 | Msa0612720:CDS |
| TTCAAAGTCGGAGTTGGATG+AGG | 0.547629 | 4_2:-61227821 | Msa0612720:CDS |
| CCTGTGATGCTCTTCATGAA+GGG | 0.548900 | 4_2:-61225263 | Msa0612720:CDS |
| GGGTGGCATCTCTAAATCTA+CGG | 0.552243 | 4_2:-61225657 | Msa0612720:CDS |
| GAGTTGGATGAGGTGGTTCG+TGG | 0.555304 | 4_2:-61227811 | Msa0612720:CDS |
| CAATTGCTATGCATGAGAGT+GGG | 0.557425 | 4_2:-61225757 | Msa0612720:CDS |
| TGCAAAGGAGAACTTGTTGG+CGG | 0.559580 | 4_2:-61225791 | Msa0612720:CDS |
| TGGCAAGACTGTTGACACAT+TGG | 0.563114 | 4_2:-61226224 | Msa0612720:CDS |
| GAAGTCAACTTTATCTGAGT+AGG | 0.564861 | 4_2:-61225018 | Msa0612720:exon |
| GAAAACTTTACATGAGAAAG+GGG | 0.565814 | 4_2:-61225339 | Msa0612720:CDS |
| TATCCTCAACTATATATCAA+GGG | 0.567280 | 4_2:-61225419 | Msa0612720:CDS |
| TGATATCCTCTCGGATTCAG+AGG | 0.567907 | 4_2:-61225867 | Msa0612720:CDS |
| CACCACACCCTCCTCTCGAA+GGG | 0.574638 | 4_2:+61225193 | None:intergenic |
| TCAGTTATGCTGTTTATGAA+GGG | 0.574849 | 4_2:-61225584 | Msa0612720:CDS |
| TTTCCTCAGCTTTACTACAA+AGG | 0.576171 | 4_2:-61225095 | Msa0612720:CDS |
| CCACCACACCCTCCTCTCGA+AGG | 0.579100 | 4_2:+61225192 | None:intergenic |
| CAAGACTGTTGACACATTGG+AGG | 0.580038 | 4_2:-61226221 | Msa0612720:CDS |
| AGTGATGATGAGGTGAGACA+GGG | 0.582895 | 4_2:-61225146 | Msa0612720:CDS |
| CCCAAGACTAGCAGGAGAAG+CGG | 0.585473 | 4_2:+61226132 | None:intergenic |
| CCTTCGAGAGGAGGGTGTGG+TGG | 0.585829 | 4_2:-61225192 | Msa0612720:CDS |
| AAAGTCGGAGTTGGATGAGG+TGG | 0.589138 | 4_2:-61227818 | Msa0612720:CDS |
| GCAATTGCTATGCATGAGAG+TGG | 0.592542 | 4_2:-61225758 | Msa0612720:CDS |
| TAGTAAAGCTGAGGAAAGGT+AGG | 0.596200 | 4_2:+61225101 | None:intergenic |
| AAGACTGTTGACACATTGGA+GGG | 0.599834 | 4_2:-61226220 | Msa0612720:CDS |
| CAGTAAAGCTGAGGAAATGT+GGG | 0.600655 | 4_2:+61225812 | None:intergenic |
| TTCCTGCTGAAACCACACTT+AGG | 0.600780 | 4_2:+61225548 | None:intergenic |
| GCAAAGGAGAACTTGTTGGC+GGG | 0.600992 | 4_2:-61225790 | Msa0612720:CDS |
| TGTAAACGCCCTTCGAGAGG+AGG | 0.601040 | 4_2:-61225201 | Msa0612720:CDS |
| ATCCTCAACTATATATCAAG+GGG | 0.601469 | 4_2:-61225418 | Msa0612720:CDS |
| TGGTGGATCAGACATTGTGT+TGG | 0.602781 | 4_2:-61225387 | Msa0612720:CDS |
| GGTTCGTGGCGGTTCTCCGG+TGG | 0.602795 | 4_2:-61227797 | Msa0612720:CDS |
| AACAGATTCAGGAAACGCCA+AGG | 0.605465 | 4_2:-61225678 | Msa0612720:CDS |
| AGCAGAGACAGAATAAGCCT+CGG | 0.606508 | 4_2:+61227551 | None:intergenic |
| GTAAACGCCCTTCGAGAGGA+GGG | 0.607590 | 4_2:-61225200 | Msa0612720:CDS |
| TCGGATTCAGAGGTTCGTGA+GGG | 0.608082 | 4_2:-61225857 | Msa0612720:CDS |
| TATAAGCCACACTATAGCTG+AGG | 0.608986 | 4_2:-61224958 | Msa0612720:three_prime_UTR |
| GTGATGATGAGGTGAGACAG+GGG | 0.611525 | 4_2:-61225145 | Msa0612720:CDS |
| ACCCCAGATGCTCCAAGATG+CGG | 0.614566 | 4_2:-61225239 | Msa0612720:CDS |
| AGTCCTGAAGAGCCAAAATG+TGG | 0.615193 | 4_2:-61225947 | Msa0612720:CDS |
| ACCGCATCTTGGAGCATCTG+GGG | 0.616858 | 4_2:+61225238 | None:intergenic |
| GTGTGAAGCTTCCAAACACA+TGG | 0.616893 | 4_2:-61227752 | Msa0612720:CDS |
| TTTGTAGTAAAGCTGAGGAA+AGG | 0.624743 | 4_2:+61225097 | None:intergenic |
| AGTTGTAAACGCCCTTCGAG+AGG | 0.628177 | 4_2:-61225204 | Msa0612720:CDS |
| TCTCCTTTGCAGTAAAGCTG+AGG | 0.629246 | 4_2:+61225803 | None:intergenic |
| ACAGATTCAGGAAACGCCAA+GGG | 0.630607 | 4_2:-61225677 | Msa0612720:CDS |
| AATTGCTATGCATGAGAGTG+GGG | 0.633961 | 4_2:-61225756 | Msa0612720:CDS |
| GCGAGACGTGAATTCAAAGT+CGG | 0.634026 | 4_2:-61227833 | Msa0612720:CDS |
| TAAGTGTGGTTTCAGCAGGA+AGG | 0.635846 | 4_2:-61225546 | Msa0612720:CDS |
| ATAAGCCACACTATAGCTGA+GGG | 0.637121 | 4_2:-61224957 | Msa0612720:three_prime_UTR |
| CCTTCATGAAGAGCATCACA+GGG | 0.642910 | 4_2:+61225264 | None:intergenic |
| TGATATATTAAGTGATGATG+AGG | 0.646285 | 4_2:-61225156 | Msa0612720:CDS |
| TTGGATGAGGTGGTTCGTGG+CGG | 0.646766 | 4_2:-61227808 | Msa0612720:CDS |
| GATTCAGGAAACGCCAAGGG+TGG | 0.648240 | 4_2:-61225674 | Msa0612720:CDS |
| TTCAAGAACAGCAGATCCTG+CGG | 0.648687 | 4_2:+61226105 | None:intergenic |
| TCACCTTTGTAGTAAAGCTG+AGG | 0.655861 | 4_2:+61225092 | None:intergenic |
| CAATACCCTCAGCTATAGTG+TGG | 0.655881 | 4_2:+61224952 | None:intergenic |
| TACAAAGGTGAGCTGATAGG+TGG | 0.660078 | 4_2:-61225080 | Msa0612720:CDS |
| GACCAAGCTTTCCAGCCGAG+AGG | 0.661429 | 4_2:+61225616 | None:intergenic |
| AAACCAGATGAACCTAAGTG+TGG | 0.682029 | 4_2:-61225560 | Msa0612720:CDS |
| CATCATCGAGAGAAAATGGG+TGG | 0.688702 | 4_2:-61227862 | Msa0612720:exon |
| AGAAGTCCGACAAGGACTCG+AGG | 0.698957 | 4_2:-61225462 | Msa0612720:CDS |
| TGACATTGTAATGTTCTGCG+TGG | 0.704967 | 4_2:-61224900 | Msa0612720:three_prime_UTR |
| CACGAACCTCTGAATCCGAG+AGG | 0.707101 | 4_2:+61225861 | None:intergenic |
| ATGGGTATGAGGGAAATCAG+TGG | 0.723809 | 4_2:+61227708 | None:intergenic |
| ACTGATGAAGAAGTCCGACA+AGG | 0.725862 | 4_2:-61225470 | Msa0612720:CDS |
| TCCTCAACTATATATCAAGG+GGG | 0.735477 | 4_2:-61225417 | Msa0612720:CDS |
| AGAACAACCAGAGATATCCG+AGG | 0.738447 | 4_2:-61227568 | Msa0612720:CDS |
| CTTCATGAAGAGCATCACAG+GGG | 0.778155 | 4_2:+61225265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTATTTTTTTT+AGG | - | chr4_2:61225148-61225167 | Msa0612720:CDS | 0.0% |
| !! | AAAATATAAGTATTATTTGT+AGG | + | chr4_2:61226067-61226086 | None:intergenic | 10.0% |
| !! | GAAAATAAAAAAATAGCTTA+TGG | - | chr4_2:61225611-61225630 | Msa0612720:CDS | 15.0% |
| !!! | TAAAAAAAGATAACTCTTTT+GGG | + | chr4_2:61226382-61226401 | None:intergenic | 15.0% |
| !!! | ATAAAAAAAGATAACTCTTT+TGG | + | chr4_2:61226383-61226402 | None:intergenic | 15.0% |
| !! | TGTTAATTCTTAGAATAATT+GGG | - | chr4_2:61227759-61227778 | Msa0612720:CDS | 15.0% |
| !!! | CGTATATTAAAGCTTTATTT+TGG | - | chr4_2:61224823-61224842 | Msa0612720:three_prime_UTR | 20.0% |
| !!! | AAGCTTTATTTTGGTTATAT+AGG | - | chr4_2:61224832-61224851 | Msa0612720:three_prime_UTR | 20.0% |
| !!! | AGCTTTATTTTGGTTATATA+GGG | - | chr4_2:61224833-61224852 | Msa0612720:three_prime_UTR | 20.0% |
| !!! | TTTTGTATAAGTTGCATTAT+AGG | - | chr4_2:61225368-61225387 | Msa0612720:CDS | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+GGG | + | chr4_2:61225426-61225445 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | + | chr4_2:61225427-61225446 | None:intergenic | 20.0% |
| !! | TTTATTGAAAACTTGATATC+CGG | + | chr4_2:61225591-61225610 | None:intergenic | 20.0% |
| !!! | GTTTAAATTGGCTTTATTTT+AGG | + | chr4_2:61225703-61225722 | None:intergenic | 20.0% |
| !! | AAAATAAAGCCAATTTAAAC+AGG | - | chr4_2:61225703-61225722 | Msa0612720:CDS | 20.0% |
| !! | TCCAAATGAATATCAAAATT+TGG | - | chr4_2:61225726-61225745 | Msa0612720:CDS | 20.0% |
| !! | CCAAATGAATATCAAAATTT+GGG | - | chr4_2:61225727-61225746 | Msa0612720:CDS | 20.0% |
| !! | CAAATGAATATCAAAATTTG+GGG | - | chr4_2:61225728-61225747 | Msa0612720:CDS | 20.0% |
| !! | ACTATATTCCATTGTTTAAT+TGG | + | chr4_2:61225950-61225969 | None:intergenic | 20.0% |
| !!! | AAAAGTTGTTGATATTTTGA+AGG | - | chr4_2:61226834-61226853 | Msa0612720:intron | 20.0% |
| !! | TGTTATATTTGTTTCATCAA+CGG | + | chr4_2:61227055-61227074 | None:intergenic | 20.0% |
| !! | CTGTTAATTCTTAGAATAAT+TGG | - | chr4_2:61227758-61227777 | Msa0612720:CDS | 20.0% |
| ! | AATTGCAAAGGGAATAAAAA+GGG | + | chr4_2:61225099-61225118 | None:intergenic | 25.0% |
| ! | AAATTGCAAAGGGAATAAAA+AGG | + | chr4_2:61225100-61225119 | None:intergenic | 25.0% |
| ! | AGTAAGATGAAAATTGCAAA+GGG | + | chr4_2:61225110-61225129 | None:intergenic | 25.0% |
| ! | AAGTAAGATGAAAATTGCAA+AGG | + | chr4_2:61225111-61225130 | None:intergenic | 25.0% |
| ! | GAACTTAATATTATTGTTGC+TGG | - | chr4_2:61225282-61225301 | Msa0612720:CDS | 25.0% |
| !!! | TCAAAACTTTGTTGATTCTT+AGG | - | chr4_2:61225321-61225340 | Msa0612720:CDS | 25.0% |
| !! | ATAAGCTAATTTTATGACAG+AGG | - | chr4_2:61225473-61225492 | Msa0612720:CDS | 25.0% |
| !! | TAAGCTAATTTTATGACAGA+GGG | - | chr4_2:61225474-61225493 | Msa0612720:CDS | 25.0% |
| ! | ATCTTAAAGAGCTTATGAAA+TGG | - | chr4_2:61225549-61225568 | Msa0612720:CDS | 25.0% |
| !!! | CCCAAATTTTGATATTCATT+TGG | + | chr4_2:61225730-61225749 | None:intergenic | 25.0% |
| ! | TGATCAATCCAATTAAACAA+TGG | - | chr4_2:61225939-61225958 | Msa0612720:CDS | 25.0% |
| ! | TGGTTAAATTACATGTGATT+AGG | - | chr4_2:61226008-61226027 | Msa0612720:CDS | 25.0% |
| ! | TTAAATTACATGTGATTAGG+TGG | - | chr4_2:61226011-61226030 | Msa0612720:CDS | 25.0% |
| ! | TAAATTACATGTGATTAGGT+GGG | - | chr4_2:61226012-61226031 | Msa0612720:CDS | 25.0% |
| ! | ATAAGTATTATTTGTAGGTG+AGG | + | chr4_2:61226062-61226081 | None:intergenic | 25.0% |
| !!! | GCAGATTTTTAATTAAGACT+TGG | - | chr4_2:61226313-61226332 | Msa0612720:intron | 25.0% |
| ! | ATGATTCATACTGTCAATAT+GGG | - | chr4_2:61226423-61226442 | Msa0612720:intron | 25.0% |
| ! | ATTAGTAGTTATTATCTGTC+AGG | - | chr4_2:61226501-61226520 | Msa0612720:intron | 25.0% |
| ! | AAAAAAGTAAAGTTCAACCA+GGG | - | chr4_2:61226707-61226726 | Msa0612720:intron | 25.0% |
| ! | GAAACAAATATAACAGATTC+AGG | - | chr4_2:61227060-61227079 | Msa0612720:intron | 25.0% |
| ! | TTATCCTCAACTATATATCA+AGG | - | chr4_2:61227329-61227348 | Msa0612720:intron | 25.0% |
| ! | TATCCTCAACTATATATCAA+GGG | - | chr4_2:61227330-61227349 | Msa0612720:intron | 25.0% |
| ! | AGAAAACTTTACATGAGAAA+GGG | - | chr4_2:61227409-61227428 | Msa0612720:intron | 25.0% |
| !! | TGATATATTAAGTGATGATG+AGG | - | chr4_2:61227593-61227612 | Msa0612720:intron | 25.0% |
| ! | TCTATATACTGTTTGATATG+AGG | - | chr4_2:61227876-61227895 | Msa0612720:five_prime_UTR | 25.0% |
| TTGGTTATATAGGGAGAATT+AGG | - | chr4_2:61224842-61224861 | Msa0612720:three_prime_UTR | 30.0% | |
| TGGTTATATAGGGAGAATTA+GGG | - | chr4_2:61224843-61224862 | Msa0612720:three_prime_UTR | 30.0% | |
| ATTGCAAAGGGAATAAAAAG+GGG | + | chr4_2:61225098-61225117 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTTTGTCTTCTTCA+AGG | - | chr4_2:61225223-61225242 | Msa0612720:CDS | 30.0% |
| ACCTTGAAGAAGACAAAAAA+AGG | + | chr4_2:61225227-61225246 | None:intergenic | 30.0% | |
| ! | TTTCTGTTTTCTTAGTAGAG+TGG | - | chr4_2:61225394-61225413 | Msa0612720:CDS | 30.0% |
| TCATTTGGACCTGTTTAAAT+TGG | + | chr4_2:61225715-61225734 | None:intergenic | 30.0% | |
| TTCACTATTTCAACGTGTTA+TGG | - | chr4_2:61225768-61225787 | Msa0612720:CDS | 30.0% | |
| GATGATTCATACTGTCAATA+TGG | - | chr4_2:61226422-61226441 | Msa0612720:intron | 30.0% | |
| TCAATATGGGATGTCAATAT+GGG | - | chr4_2:61226436-61226455 | Msa0612720:intron | 30.0% | |
| GAAAAAAGTAAAGTTCAACC+AGG | - | chr4_2:61226706-61226725 | Msa0612720:intron | 30.0% | |
| ! | TTTCTGCTAAATCCACATTT+TGG | + | chr4_2:61226817-61226836 | None:intergenic | 30.0% |
| !! | TGATATTTTGAAGGAAGAGA+AGG | - | chr4_2:61226843-61226862 | Msa0612720:intron | 30.0% |
| ! | AAGGATGTTTTCAAAGATCA+CGG | - | chr4_2:61227021-61227040 | Msa0612720:intron | 30.0% |
| ! | TCAGTTATGCTGTTTATGAA+GGG | - | chr4_2:61227165-61227184 | Msa0612720:intron | 30.0% |
| AGAATGTCAAAACTCTCAAA+CGG | + | chr4_2:61227258-61227277 | None:intergenic | 30.0% | |
| GATATATAGTTGAGGATAAC+TGG | + | chr4_2:61227328-61227347 | None:intergenic | 30.0% | |
| ATCCTCAACTATATATCAAG+GGG | - | chr4_2:61227331-61227350 | Msa0612720:intron | 30.0% | |
| CAGAAAACTTTACATGAGAA+AGG | - | chr4_2:61227408-61227427 | Msa0612720:intron | 30.0% | |
| GAAAACTTTACATGAGAAAG+GGG | - | chr4_2:61227410-61227429 | Msa0612720:intron | 30.0% | |
| TTTCTTCAAACGATCTTCAA+TGG | + | chr4_2:61227451-61227470 | None:intergenic | 30.0% | |
| ! | GGATTAAGGTATTCTCAAAT+TGG | - | chr4_2:61227625-61227644 | Msa0612720:intron | 30.0% |
| GCAATATATAGAAGCAAAAG+AGG | + | chr4_2:61227933-61227952 | None:intergenic | 30.0% | |
| ! | CTTTTGCTTCTATATATTGC+TGG | - | chr4_2:61227933-61227952 | Msa0612720:five_prime_UTR | 30.0% |
| TCATCATCATCGAGAGAAAA+TGG | - | chr4_2:61224883-61224902 | Msa0612720:three_prime_UTR | 35.0% | |
| CATCATCATCGAGAGAAAAT+GGG | - | chr4_2:61224884-61224903 | Msa0612720:three_prime_UTR | 35.0% | |
| ATACCCATTTCTTAAGGGTT+CGG | - | chr4_2:61225056-61225075 | Msa0612720:CDS | 35.0% | |
| AAACCGAACCCTTAAGAAAT+GGG | + | chr4_2:61225062-61225081 | None:intergenic | 35.0% | |
| AAAACCGAACCCTTAAGAAA+TGG | + | chr4_2:61225063-61225082 | None:intergenic | 35.0% | |
| AAGCACAAGTGAGACTATTT+GGG | + | chr4_2:61225666-61225685 | None:intergenic | 35.0% | |
| TAAGCACAAGTGAGACTATT+TGG | + | chr4_2:61225667-61225686 | None:intergenic | 35.0% | |
| ATGAACCTAATAAGCAGAGT+TGG | + | chr4_2:61225872-61225891 | None:intergenic | 35.0% | |
| !!! | GGTTGGTGTTTTGTTTTTGT+TGG | - | chr4_2:61225988-61226007 | Msa0612720:CDS | 35.0% |
| ATTAGTCCACAAGTATTCAC+TGG | - | chr4_2:61226151-61226170 | Msa0612720:CDS | 35.0% | |
| TTAGTCCACAAGTATTCACT+GGG | - | chr4_2:61226152-61226171 | Msa0612720:CDS | 35.0% | |
| AATTTCCCAGTGAATACTTG+TGG | + | chr4_2:61226160-61226179 | None:intergenic | 35.0% | |
| !! | AGATAACTCTTTTGGGTACA+TGG | + | chr4_2:61226375-61226394 | None:intergenic | 35.0% |
| GTCAATATGGGATGTCAATA+TGG | - | chr4_2:61226435-61226454 | Msa0612720:intron | 35.0% | |
| GTAGTTATTATCTGTCAGGA+TGG | - | chr4_2:61226505-61226524 | Msa0612720:intron | 35.0% | |
| !!! | TGCTACTTTTGAAACCTTGT+TGG | + | chr4_2:61226575-61226594 | None:intergenic | 35.0% |
| AACAAGGTTTCAAAAGTAGC+AGG | - | chr4_2:61226574-61226593 | Msa0612720:intron | 35.0% | |
| !! | CTGTCTTGCTTTTCATGAAA+GGG | - | chr4_2:61226779-61226798 | Msa0612720:intron | 35.0% |
| AAGGAAGAGAAGGTTAAGTT+TGG | - | chr4_2:61226853-61226872 | Msa0612720:intron | 35.0% | |
| !! | TGGAAGTTTTGATATCCTCT+CGG | - | chr4_2:61226873-61226892 | Msa0612720:intron | 35.0% |
| ! | GCTTGAAGAAGTTTTCCAAT+TGG | - | chr4_2:61226914-61226933 | Msa0612720:intron | 35.0% |
| TGAGTACAAATTTAGCCTCT+CGG | - | chr4_2:61227118-61227137 | Msa0612720:intron | 35.0% | |
| ! | CTCAGTTATGCTGTTTATGA+AGG | - | chr4_2:61227164-61227183 | Msa0612720:intron | 35.0% |
| ! | CAAACGGAACATTTTCTTGT+CGG | + | chr4_2:61227242-61227261 | None:intergenic | 35.0% |
| TCCTCAACTATATATCAAGG+GGG | - | chr4_2:61227332-61227351 | Msa0612720:intron | 35.0% | |
| TTTGTAGTAAAGCTGAGGAA+AGG | + | chr4_2:61227655-61227674 | None:intergenic | 35.0% | |
| TTTCCTCAGCTTTACTACAA+AGG | - | chr4_2:61227654-61227673 | Msa0612720:intron | 35.0% | |
| AGGTGGTTGTGATATCATTA+TGG | - | chr4_2:61227686-61227705 | Msa0612720:intron | 35.0% | |
| ATTATGGAGCTGCGAAATAA+TGG | - | chr4_2:61227702-61227721 | Msa0612720:CDS | 35.0% | |
| GAAGTCAACTTTATCTGAGT+AGG | - | chr4_2:61227731-61227750 | Msa0612720:CDS | 35.0% | |
| !!! | GCTGAGGGTATTGTTAATTT+TGG | - | chr4_2:61227807-61227826 | Msa0612720:CDS | 35.0% |
| !!! | TTGTTAATTTTGGTGCCATG+AGG | - | chr4_2:61227817-61227836 | Msa0612720:CDS | 35.0% |
| ATGTCAAAAACAAAGCCTCA+TGG | + | chr4_2:61227835-61227854 | None:intergenic | 35.0% | |
| TCCCTCATACCCATTTCTTA+AGG | - | chr4_2:61225050-61225069 | Msa0612720:CDS | 40.0% | |
| CCCTTAAGAAATGGGTATGA+GGG | + | chr4_2:61225054-61225073 | None:intergenic | 40.0% | |
| CCCTCATACCCATTTCTTAA+GGG | - | chr4_2:61225051-61225070 | Msa0612720:CDS | 40.0% | |
| ACCCTTAAGAAATGGGTATG+AGG | + | chr4_2:61225055-61225074 | None:intergenic | 40.0% | |
| ! | AACAAAGTCCTGCATTTTCC+TGG | + | chr4_2:61225819-61225838 | None:intergenic | 40.0% |
| TCTTGCCAACTCTGCTTATT+AGG | - | chr4_2:61225864-61225883 | Msa0612720:CDS | 40.0% | |
| !! | CATAGTCATCGACTCATTGA+TGG | + | chr4_2:61225907-61225926 | None:intergenic | 40.0% |
| CATCAATGAGTCGATGACTA+TGG | - | chr4_2:61225905-61225924 | Msa0612720:CDS | 40.0% | |
| ATTACATGTGATTAGGTGGG+AGG | - | chr4_2:61226015-61226034 | Msa0612720:CDS | 40.0% | |
| TTACATGTGATTAGGTGGGA+GGG | - | chr4_2:61226016-61226035 | Msa0612720:CDS | 40.0% | |
| TGCAATTGTTCGTCACTGAA+GGG | + | chr4_2:61226228-61226247 | None:intergenic | 40.0% | |
| ATGCAATTGTTCGTCACTGA+AGG | + | chr4_2:61226229-61226248 | None:intergenic | 40.0% | |
| AAGACTGTTGACACATTGGA+GGG | - | chr4_2:61226529-61226548 | Msa0612720:intron | 40.0% | |
| TCCATCAAGTTTAGCCAACA+AGG | - | chr4_2:61226558-61226577 | Msa0612720:intron | 40.0% | |
| ! | ACCTTGTTGGCTAAACTTGA+TGG | + | chr4_2:61226562-61226581 | None:intergenic | 40.0% |
| TCAACTGAAAAAGCGATTGC+AGG | - | chr4_2:61226738-61226757 | Msa0612720:intron | 40.0% | |
| CCTTTCATGAAAAGCAAGAC+AGG | + | chr4_2:61226781-61226800 | None:intergenic | 40.0% | |
| !! | CCTGTCTTGCTTTTCATGAA+AGG | - | chr4_2:61226778-61226797 | Msa0612720:intron | 40.0% |
| !!! | AATCCACATTTTGGCTCTTC+AGG | + | chr4_2:61226808-61226827 | None:intergenic | 40.0% |
| CAGTAAAGCTGAGGAAATGT+GGG | + | chr4_2:61226940-61226959 | None:intergenic | 40.0% | |
| TTTCCTCAGCTTTACTGCAA+AGG | - | chr4_2:61226943-61226962 | Msa0612720:intron | 40.0% | |
| TACTGCAAAGGAGAACTTGT+TGG | - | chr4_2:61226955-61226974 | Msa0612720:intron | 40.0% | |
| CAATTGCTATGCATGAGAGT+GGG | - | chr4_2:61226992-61227011 | Msa0612720:intron | 40.0% | |
| AATTGCTATGCATGAGAGTG+GGG | - | chr4_2:61226993-61227012 | Msa0612720:intron | 40.0% | |
| AAACCAGATGAACCTAAGTG+TGG | - | chr4_2:61227189-61227208 | Msa0612720:intron | 40.0% | |
| AAACCACACTTAGGTTCATC+TGG | + | chr4_2:61227195-61227214 | None:intergenic | 40.0% | |
| AATAAACCTCGAGTCCTTGT+CGG | + | chr4_2:61227296-61227315 | None:intergenic | 40.0% | |
| GACTCGAGGTTTATTCAAAC+TGG | - | chr4_2:61227301-61227320 | Msa0612720:intron | 40.0% | |
| TCCCCCTTGATATATAGTTG+AGG | + | chr4_2:61227336-61227355 | None:intergenic | 40.0% | |
| TATATCAAGGGGGAGCTTAT+TGG | - | chr4_2:61227342-61227361 | Msa0612720:intron | 40.0% | |
| GTGTTGGAGATGCAAAAAAG+CGG | - | chr4_2:61227378-61227397 | Msa0612720:intron | 40.0% | |
| TGTTGGAGATGCAAAAAAGC+GGG | - | chr4_2:61227379-61227398 | Msa0612720:intron | 40.0% | |
| ! | CGATCTTCAATGGTCTCTTT+TGG | + | chr4_2:61227441-61227460 | None:intergenic | 40.0% |
| TAGTAAAGCTGAGGAAAGGT+AGG | + | chr4_2:61227651-61227670 | None:intergenic | 40.0% | |
| TCACCTTTGTAGTAAAGCTG+AGG | + | chr4_2:61227660-61227679 | None:intergenic | 40.0% | |
| TACTACAAAGGTGAGCTGAT+AGG | - | chr4_2:61227666-61227685 | Msa0612720:intron | 40.0% | |
| TATAAGCCACACTATAGCTG+AGG | - | chr4_2:61227791-61227810 | Msa0612720:CDS | 40.0% | |
| ATAAGCCACACTATAGCTGA+GGG | - | chr4_2:61227792-61227811 | Msa0612720:CDS | 40.0% | |
| TGACATTGTAATGTTCTGCG+TGG | - | chr4_2:61227849-61227868 | Msa0612720:CDS | 40.0% | |
| CATCATCGAGAGAAAATGGG+TGG | - | chr4_2:61224887-61224906 | Msa0612720:three_prime_UTR | 45.0% | |
| TCGAGAGAAAATGGGTGGTT+CGG | - | chr4_2:61224892-61224911 | Msa0612720:three_prime_UTR | 45.0% | |
| GCGAGACGTGAATTCAAAGT+CGG | - | chr4_2:61224916-61224935 | Msa0612720:three_prime_UTR | 45.0% | |
| CGTGAATTCAAAGTCGGAGT+TGG | - | chr4_2:61224922-61224941 | Msa0612720:three_prime_UTR | 45.0% | |
| TTCAAAGTCGGAGTTGGATG+AGG | - | chr4_2:61224928-61224947 | Msa0612720:three_prime_UTR | 45.0% | |
| GTGTGAAGCTTCCAAACACA+TGG | - | chr4_2:61224997-61225016 | Msa0612720:three_prime_UTR | 45.0% | |
| ! | GAAGAGTTGGTCCATGTGTT+TGG | + | chr4_2:61225011-61225030 | None:intergenic | 45.0% |
| TGGCTAAGTGAGAGAAGAGT+TGG | + | chr4_2:61225024-61225043 | None:intergenic | 45.0% | |
| ATGGGTATGAGGGAAATCAG+TGG | + | chr4_2:61225044-61225063 | None:intergenic | 45.0% | |
| GGGAATAAAAAGGGGCGATT+GGG | + | chr4_2:61225090-61225109 | None:intergenic | 45.0% | |
| AGGGAATAAAAAGGGGCGAT+TGG | + | chr4_2:61225091-61225110 | None:intergenic | 45.0% | |
| AGAACAACCAGAGATATCCG+AGG | - | chr4_2:61225181-61225200 | Msa0612720:CDS | 45.0% | |
| GAATAAGCCTCGGATATCTC+TGG | + | chr4_2:61225191-61225210 | None:intergenic | 45.0% | |
| AGCAGAGACAGAATAAGCCT+CGG | + | chr4_2:61225201-61225220 | None:intergenic | 45.0% | |
| AAAACTTGATATCCGGCCCA+TGG | + | chr4_2:61225584-61225603 | None:intergenic | 45.0% | |
| ! | TTTTCCTGGCAAAGATGCCA+AGG | + | chr4_2:61225805-61225824 | None:intergenic | 45.0% |
| CATCTTTGCCAGGAAAATGC+AGG | - | chr4_2:61225808-61225827 | Msa0612720:CDS | 45.0% | |
| !! | AGTTTTGTCTGTGCTGTGTC+TGG | - | chr4_2:61225967-61225986 | Msa0612720:CDS | 45.0% |
| !! | TCCACACTGACTTTCTGTCT+TGG | - | chr4_2:61226182-61226201 | Msa0612720:CDS | 45.0% |
| ACCAAGACAGAAAGTCAGTG+TGG | + | chr4_2:61226186-61226205 | None:intergenic | 45.0% | |
| TCACTGAAGGGTTTCACTCT+TGG | + | chr4_2:61226216-61226235 | None:intergenic | 45.0% | |
| TGGCAAGACTGTTGACACAT+TGG | - | chr4_2:61226525-61226544 | Msa0612720:intron | 45.0% | |
| CAAGACTGTTGACACATTGG+AGG | - | chr4_2:61226528-61226547 | Msa0612720:intron | 45.0% | |
| GTAGCAGGCTCAATTAACTC+TGG | - | chr4_2:61226589-61226608 | Msa0612720:intron | 45.0% | |
| TTCAAGAACAGCAGATCCTG+CGG | + | chr4_2:61226647-61226666 | None:intergenic | 45.0% | |
| TTCAGTTGACTACTAAGCCC+TGG | + | chr4_2:61226727-61226746 | None:intergenic | 45.0% | |
| AGTCCTGAAGAGCCAAAATG+TGG | - | chr4_2:61226802-61226821 | Msa0612720:intron | 45.0% | |
| TGATATCCTCTCGGATTCAG+AGG | - | chr4_2:61226882-61226901 | Msa0612720:intron | 45.0% | |
| GCAGTAAAGCTGAGGAAATG+TGG | + | chr4_2:61226941-61226960 | None:intergenic | 45.0% | |
| TCTCCTTTGCAGTAAAGCTG+AGG | + | chr4_2:61226949-61226968 | None:intergenic | 45.0% | |
| !! | TGCAAAGGAGAACTTGTTGG+CGG | - | chr4_2:61226958-61226977 | Msa0612720:intron | 45.0% |
| GCAATTGCTATGCATGAGAG+TGG | - | chr4_2:61226991-61227010 | Msa0612720:intron | 45.0% | |
| AACAGATTCAGGAAACGCCA+AGG | - | chr4_2:61227071-61227090 | Msa0612720:intron | 45.0% | |
| ACAGATTCAGGAAACGCCAA+GGG | - | chr4_2:61227072-61227091 | Msa0612720:intron | 45.0% | |
| AGATTTAGAGATGCCACCCT+TGG | + | chr4_2:61227091-61227110 | None:intergenic | 45.0% | |
| GGGTGGCATCTCTAAATCTA+CGG | - | chr4_2:61227092-61227111 | Msa0612720:intron | 45.0% | |
| TACAAATTTAGCCTCTCGGC+TGG | - | chr4_2:61227122-61227141 | Msa0612720:intron | 45.0% | |
| CTGGAAAGCTTGGTCAATTC+AGG | - | chr4_2:61227141-61227160 | Msa0612720:intron | 45.0% | |
| AACCTAAGTGTGGTTTCAGC+AGG | - | chr4_2:61227199-61227218 | Msa0612720:intron | 45.0% | |
| TTCCTGCTGAAACCACACTT+AGG | + | chr4_2:61227204-61227223 | None:intergenic | 45.0% | |
| TAAGTGTGGTTTCAGCAGGA+AGG | - | chr4_2:61227203-61227222 | Msa0612720:intron | 45.0% | |
| ACTGATGAAGAAGTCCGACA+AGG | - | chr4_2:61227279-61227298 | Msa0612720:intron | 45.0% | |
| ! | TGGTGGATCAGACATTGTGT+TGG | - | chr4_2:61227362-61227381 | Msa0612720:intron | 45.0% |
| GTTGGAGATGCAAAAAAGCG+GGG | - | chr4_2:61227380-61227399 | Msa0612720:intron | 45.0% | |
| !! | CTTCATGAAGAGCATCACAG+GGG | + | chr4_2:61227487-61227506 | None:intergenic | 45.0% |
| !! | CCTTCATGAAGAGCATCACA+GGG | + | chr4_2:61227488-61227507 | None:intergenic | 45.0% |
| CCTGTGATGCTCTTCATGAA+GGG | - | chr4_2:61227486-61227505 | Msa0612720:intron | 45.0% | |
| CTGGAACTAAAACCGCATCT+TGG | + | chr4_2:61227525-61227544 | None:intergenic | 45.0% | |
| ! | AAGTGATGATGAGGTGAGAC+AGG | - | chr4_2:61227602-61227621 | Msa0612720:intron | 45.0% |
| ! | AGTGATGATGAGGTGAGACA+GGG | - | chr4_2:61227603-61227622 | Msa0612720:intron | 45.0% |
| TACAAAGGTGAGCTGATAGG+TGG | - | chr4_2:61227669-61227688 | Msa0612720:intron | 45.0% | |
| CAATACCCTCAGCTATAGTG+TGG | + | chr4_2:61227800-61227819 | None:intergenic | 45.0% | |
| !! | TAAATATTAAAAACAATATA+TGG | + | chr4_2:61226132-61226151 | None:intergenic | 5.0% |
| AAAGTCGGAGTTGGATGAGG+TGG | - | chr4_2:61224931-61224950 | Msa0612720:three_prime_UTR | 50.0% | |
| TGAAATGGACACCGAGTCCA+TGG | - | chr4_2:61225564-61225583 | Msa0612720:CDS | 50.0% | |
| GAAATGGACACCGAGTCCAT+GGG | - | chr4_2:61225565-61225584 | Msa0612720:CDS | 50.0% | |
| TTGTCTGTGCTGTGTCTGGT+TGG | - | chr4_2:61225971-61225990 | Msa0612720:CDS | 50.0% | |
| TAGGTGAGGACGCATGTTCA+AGG | + | chr4_2:61226048-61226067 | None:intergenic | 50.0% | |
| !! | TTCTCCTGCTAGTCTTGGGA+TGG | - | chr4_2:61226621-61226640 | Msa0612720:intron | 50.0% |
| TCGGATTCAGAGGTTCGTGA+GGG | - | chr4_2:61226892-61226911 | Msa0612720:intron | 50.0% | |
| CTGAGGAAATGTGGGCCAAT+TGG | + | chr4_2:61226932-61226951 | None:intergenic | 50.0% | |
| !! | GCAAAGGAGAACTTGTTGGC+GGG | - | chr4_2:61226959-61226978 | Msa0612720:intron | 50.0% |
| GCATGAGAGTGGGGAGTTAA+AGG | - | chr4_2:61227002-61227021 | Msa0612720:intron | 50.0% | |
| ATCAAGGGGGAGCTTATTGG+TGG | - | chr4_2:61227345-61227364 | Msa0612720:intron | 50.0% | |
| CCCTGTGATGCTCTTCATGA+AGG | - | chr4_2:61227485-61227504 | Msa0612720:intron | 50.0% | |
| !! | CCCTTCATGAAGAGCATCAC+AGG | + | chr4_2:61227489-61227508 | None:intergenic | 50.0% |
| ! | AACCGCATCTTGGAGCATCT+GGG | + | chr4_2:61227515-61227534 | None:intergenic | 50.0% |
| ! | AAACCGCATCTTGGAGCATC+TGG | + | chr4_2:61227516-61227535 | None:intergenic | 50.0% |
| !! | TCGAAGGGCGTTTACAACTC+TGG | + | chr4_2:61227544-61227563 | None:intergenic | 50.0% |
| AGTTGTAAACGCCCTTCGAG+AGG | - | chr4_2:61227545-61227564 | Msa0612720:CDS | 50.0% | |
| ! | GTGATGATGAGGTGAGACAG+GGG | - | chr4_2:61227604-61227623 | Msa0612720:intron | 50.0% |
| TGAGGTGAGACAGGGGATTA+AGG | - | chr4_2:61227611-61227630 | Msa0612720:intron | 50.0% | |
| GAGTTGGATGAGGTGGTTCG+TGG | - | chr4_2:61224938-61224957 | Msa0612720:three_prime_UTR | 55.0% | |
| TTGGATGAGGTGGTTCGTGG+CGG | - | chr4_2:61224941-61224960 | Msa0612720:three_prime_UTR | 55.0% | |
| TCCGGTGGTGCTTCACTTCT+GGG | - | chr4_2:61224967-61224986 | Msa0612720:three_prime_UTR | 55.0% | |
| TGCTTCACTTCTGGGCGTCA+TGG | - | chr4_2:61224975-61224994 | Msa0612720:three_prime_UTR | 55.0% | |
| TGATATCCGGCCCATGGACT+CGG | + | chr4_2:61225578-61225597 | None:intergenic | 55.0% | |
| ! | TTATGGTTCTGCCGCCTCCT+TGG | - | chr4_2:61225785-61225804 | Msa0612720:CDS | 55.0% |
| TGGCAAAGATGCCAAGGAGG+CGG | + | chr4_2:61225799-61225818 | None:intergenic | 55.0% | |
| TCCTGGCAAAGATGCCAAGG+AGG | + | chr4_2:61225802-61225821 | None:intergenic | 55.0% | |
| CCCAAGACTAGCAGGAGAAG+CGG | + | chr4_2:61226620-61226639 | None:intergenic | 55.0% | |
| !! | CCGCTTCTCCTGCTAGTCTT+GGG | - | chr4_2:61226617-61226636 | Msa0612720:intron | 55.0% |
| CACGAACCTCTGAATCCGAG+AGG | + | chr4_2:61226891-61226910 | None:intergenic | 55.0% | |
| CTCGGATTCAGAGGTTCGTG+AGG | - | chr4_2:61226891-61226910 | Msa0612720:intron | 55.0% | |
| GATTCAGGAAACGCCAAGGG+TGG | - | chr4_2:61227075-61227094 | Msa0612720:intron | 55.0% | |
| AGAAGTCCGACAAGGACTCG+AGG | - | chr4_2:61227287-61227306 | Msa0612720:intron | 55.0% | |
| !! | GAAGAGCATCACAGGGGAAG+AGG | + | chr4_2:61227481-61227500 | None:intergenic | 55.0% |
| ACCCCAGATGCTCCAAGATG+CGG | - | chr4_2:61227510-61227529 | Msa0612720:intron | 55.0% | |
| ! | ACCGCATCTTGGAGCATCTG+GGG | + | chr4_2:61227514-61227533 | None:intergenic | 55.0% |
| TGTAAACGCCCTTCGAGAGG+AGG | - | chr4_2:61227548-61227567 | Msa0612720:CDS | 55.0% | |
| GTAAACGCCCTTCGAGAGGA+GGG | - | chr4_2:61227549-61227568 | Msa0612720:CDS | 55.0% | |
| !!! | GAGGAGGGTGTGGTGGATTT+TGG | - | chr4_2:61227564-61227583 | Msa0612720:CDS | 55.0% |
| CTCCGGTGGTGCTTCACTTC+TGG | - | chr4_2:61224966-61224985 | Msa0612720:three_prime_UTR | 60.0% | |
| ! | GCCCAGAAGTGAAGCACCAC+CGG | + | chr4_2:61224971-61224990 | None:intergenic | 60.0% |
| GCCTCCTTGGCATCTTTGCC+AGG | - | chr4_2:61225798-61225817 | Msa0612720:CDS | 60.0% | |
| ! | GCCGCTTCTCCTGCTAGTCT+TGG | - | chr4_2:61226616-61226635 | Msa0612720:intron | 60.0% |
| AGCCTCTCGGCTGGAAAGCT+TGG | - | chr4_2:61227131-61227150 | Msa0612720:intron | 60.0% | |
| GACCAAGCTTTCCAGCCGAG+AGG | + | chr4_2:61227136-61227155 | None:intergenic | 60.0% | |
| CACCACACCCTCCTCTCGAA+GGG | + | chr4_2:61227559-61227578 | None:intergenic | 60.0% | |
| GGTGGTTCGTGGCGGTTCTC+CGG | - | chr4_2:61224949-61224968 | Msa0612720:three_prime_UTR | 65.0% | |
| TGGACACCGAGTCCATGGGC+CGG | - | chr4_2:61225569-61225588 | Msa0612720:CDS | 65.0% | |
| GCGGCCATCCCAAGACTAGC+AGG | + | chr4_2:61226628-61226647 | None:intergenic | 65.0% | |
| !! | GCTAGTCTTGGGATGGCCGC+AGG | - | chr4_2:61226628-61226647 | Msa0612720:intron | 65.0% |
| CCACCACACCCTCCTCTCGA+AGG | + | chr4_2:61227560-61227579 | None:intergenic | 65.0% | |
| ! | CCTTCGAGAGGAGGGTGTGG+TGG | - | chr4_2:61227557-61227576 | Msa0612720:CDS | 65.0% |
| GGTTCGTGGCGGTTCTCCGG+TGG | - | chr4_2:61224952-61224971 | Msa0612720:three_prime_UTR | 70.0% | |
| CGCCCTTCGAGAGGAGGGTG+TGG | - | chr4_2:61227554-61227573 | Msa0612720:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61224807 | 61227964 | 61224807 | ID=Msa0612720;Name=Msa0612720 |
| chr4_2 | mRNA | 61224807 | 61227964 | 61224807 | ID=Msa0612720-mRNA-1;Parent=Msa0612720;Name=Msa0612720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=95|1|1|1|1|1|3|212|491 |
| chr4_2 | exon | 61224807 | 61226248 | 61224807 | ID=Msa0612720-mRNA-1:exon:16628;Parent=Msa0612720-mRNA-1 |
| chr4_2 | exon | 61227527 | 61227601 | 61227527 | ID=Msa0612720-mRNA-1:exon:16627;Parent=Msa0612720-mRNA-1 |
| chr4_2 | exon | 61227699 | 61227964 | 61227699 | ID=Msa0612720-mRNA-1:exon:16626;Parent=Msa0612720-mRNA-1 |
| chr4_2 | five_prime_UTR | 61227870 | 61227964 | 61227870 | ID=Msa0612720-mRNA-1:five_prime_utr;Parent=Msa0612720-mRNA-1 |
| chr4_2 | CDS | 61227699 | 61227869 | 61227699 | ID=Msa0612720-mRNA-1:cds;Parent=Msa0612720-mRNA-1 |
| chr4_2 | CDS | 61227527 | 61227601 | 61227527 | ID=Msa0612720-mRNA-1:cds;Parent=Msa0612720-mRNA-1 |
| chr4_2 | CDS | 61225019 | 61226248 | 61225019 | ID=Msa0612720-mRNA-1:cds;Parent=Msa0612720-mRNA-1 |
| chr4_2 | three_prime_UTR | 61224807 | 61225018 | 61224807 | ID=Msa0612720-mRNA-1:three_prime_utr;Parent=Msa0612720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
