AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302980 MtrunA17_Chr2g0329421 98.104 211 4 0 1 211 1 211 6.30e-155 427
Msa0302980 MtrunA17_Chr4g0033611 68.878 196 58 2 1 194 50 244 7.67e-96 280
Msa0302980 MtrunA17_Chr3g0078041 41.304 184 99 3 23 202 46 224 9.10e-41 138
Msa0302980 MtrunA17_Chr2g0329361 36.757 185 104 4 26 198 60 243 4.85e-35 124
Msa0302980 MtrunA17_Chr7g0233911 37.705 183 104 3 24 202 31 207 1.87e-33 119
Msa0302980 MtrunA17_Chr5g0448761 54.128 109 45 3 26 129 59 167 1.03e-21 92.8
Msa0302980 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 182 271 2.32e-21 91.7
Msa0302980 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 28 117 1.93e-18 83.2
Msa0302980 MtrunA17_Chr6g0458391 40.196 102 60 1 27 127 225 326 3.35e-20 88.2
Msa0302980 MtrunA17_Chr6g0458391 38.318 107 65 1 27 132 91 197 1.40e-16 77.8
Msa0302980 MtrunA17_Chr1g0202341 38.596 114 58 3 26 132 50 158 1.72e-19 86.3
Msa0302980 MtrunA17_Chr3g0082121 40.952 105 60 2 27 129 43 147 1.85e-18 83.2
Msa0302980 MtrunA17_Chr5g0401121 39.815 108 59 3 27 130 56 161 2.57e-18 78.6
Msa0302980 MtrunA17_Chr1g0203721 39.796 98 58 1 29 125 65 162 1.73e-17 80.5
Msa0302980 MtrunA17_Chr2g0291591 34.058 138 86 2 22 157 57 191 1.40e-15 74.7
Msa0302980 MtrunA17_Chr5g0440451 36.538 104 54 2 24 127 40 131 9.32e-15 72.4
Msa0302980 MtrunA17_Chr2g0291581 38.235 102 58 2 27 127 71 168 4.03e-13 67.8
Msa0302980 MtrunA17_Chr3g0080351 31.405 121 69 2 26 132 75 195 1.04e-12 66.6
Msa0302980 MtrunA17_Chr8g0363841 30.088 113 75 2 25 133 12 124 1.55e-12 65.9
Msa0302980 MtrunA17_Chr7g0258861 35.577 104 64 2 26 127 9 111 6.36e-12 63.5
Msa0302980 MtrunA17_Chr2g0324011 38.462 104 60 3 26 127 9 110 2.07e-11 62.4
Msa0302980 MtrunA17_Chr2g0329031 31.304 115 73 3 20 132 7 117 2.11e-11 62.8
Msa0302980 MtrunA17_Chr1g0171741 36.275 102 59 4 32 129 138 237 9.64e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302980 AT3G59470.3 67.391 184 60 0 25 208 68 251 4.32e-95 278
Msa0302980 AT3G59470.1 67.391 184 60 0 25 208 68 251 4.32e-95 278
Msa0302980 AT3G59470.2 67.391 184 60 0 25 208 80 263 6.74e-95 278
Msa0302980 AT3G07500.1 42.487 193 100 4 18 199 17 209 4.71e-47 154
Msa0302980 AT2G43280.1 38.462 195 107 4 16 202 7 196 2.01e-35 124
Msa0302980 AT4G12850.1 34.973 183 106 3 24 202 8 181 3.01e-34 120
Msa0302980 AT2G43280.2 39.394 165 91 3 42 202 2 161 1.01e-32 116
Msa0302980 AT4G38180.1 56.481 108 43 2 26 129 72 179 2.60e-25 103
Msa0302980 AT4G12850.4 44.231 104 56 1 24 127 8 109 1.91e-24 94.4
Msa0302980 AT4G12850.2 44.231 104 56 1 24 127 8 109 2.35e-24 94.0
Msa0302980 AT3G06250.2 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa0302980 AT3G06250.2 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa0302980 AT3G06250.1 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa0302980 AT3G06250.1 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa0302980 AT3G06250.3 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa0302980 AT3G06250.3 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa0302980 AT5G18960.2 43.137 102 46 1 26 127 42 131 3.16e-21 91.7
Msa0302980 AT5G18960.2 40.367 109 53 1 23 131 207 303 3.38e-21 91.7
Msa0302980 AT5G18960.1 43.137 102 46 1 26 127 42 131 3.16e-21 91.7
Msa0302980 AT5G18960.1 40.367 109 53 1 23 131 207 303 3.38e-21 91.7
Msa0302980 AT1G52520.1 36.792 106 64 1 22 127 80 182 7.54e-17 79.0
Msa0302980 AT1G80010.1 36.792 106 64 1 27 132 95 197 2.05e-15 74.7
Msa0302980 AT4G19990.6 30.000 150 75 3 24 159 21 154 2.23e-14 71.6
Msa0302980 AT4G19990.2 30.000 150 75 3 24 159 21 154 2.23e-14 71.6
Msa0302980 AT4G19990.7 30.000 150 75 3 24 159 35 168 2.41e-14 71.6
Msa0302980 AT4G19990.3 30.000 150 75 3 24 159 21 154 2.63e-14 71.6
Msa0302980 AT4G19990.4 30.000 150 75 3 24 159 21 154 2.63e-14 71.6
Msa0302980 AT4G19990.5 30.000 150 75 3 24 159 21 154 2.81e-14 71.2
Msa0302980 AT5G28530.1 31.707 123 78 4 10 127 38 159 5.66e-13 67.4
Msa0302980 AT5G28530.3 31.707 123 78 4 10 127 38 159 5.87e-13 67.4
Msa0302980 AT5G28530.2 31.707 123 78 4 10 127 38 159 5.87e-13 67.4
Msa0302980 AT5G28530.4 30.597 134 85 5 1 127 27 159 5.96e-13 67.4
Msa0302980 AT5G28530.5 30.597 134 85 5 1 127 27 159 6.06e-13 67.4
Msa0302980 AT2G32250.6 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa0302980 AT2G32250.1 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa0302980 AT2G32250.3 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa0302980 AT2G32250.2 33.333 129 78 3 5 129 14 138 8.99e-13 67.0
Msa0302980 AT2G32250.4 33.333 129 78 3 5 129 14 138 8.99e-13 67.0
Msa0302980 AT2G32250.5 33.333 129 78 3 5 129 14 138 9.59e-13 67.0
Msa0302980 AT3G22170.2 30.137 146 85 4 2 132 46 189 1.05e-11 63.9
Msa0302980 AT3G22170.1 30.137 146 85 4 2 132 46 189 1.05e-11 63.9
Msa0302980 AT2G32250.7 35.000 100 59 2 32 129 2 97 1.68e-11 63.2
Msa0302980 AT2G32250.8 35.000 100 59 2 32 129 2 97 1.79e-11 63.2
Msa0302980 AT2G27110.2 28.708 209 123 7 4 206 27 215 1.94e-11 63.2
Msa0302980 AT2G27110.1 28.708 209 123 7 4 206 27 215 1.94e-11 63.2
Msa0302980 AT1G76320.2 35.000 100 59 3 32 129 2 97 5.61e-11 61.6
Msa0302980 AT1G76320.1 35.000 100 59 3 32 129 2 97 6.00e-11 61.6
Msa0302980 AT1G76320.4 35.000 100 59 3 32 129 2 97 6.00e-11 61.6
Msa0302980 AT1G76320.3 35.000 100 59 3 32 129 2 97 7.51e-11 61.2

Find 73 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAATGCCTCACCATTAC+TGG 0.248927 2_3:+60012854 None:intergenic
AGGCGTGATGGATCTGTTAT+TGG 0.276667 2_3:-60012546 Msa0302980:CDS
TGGTTGCAGGGCAATGATTA+TGG 0.280378 2_3:-60012439 Msa0302980:CDS
CAGAAACAAGGGTTGGTTGC+AGG 0.300475 2_3:-60012452 Msa0302980:CDS
CAGGAACTATTGAGGTGATT+TGG 0.320322 2_3:+60012706 None:intergenic
TTGTAACTCAGTCCAGCTTT+AGG 0.332915 2_3:-60011301 Msa0302980:three_prime_UTR
AGCGAGCTGAAACCTATAAA+AGG 0.338658 2_3:-60011532 Msa0302980:CDS
GTTCTCATAACCGATGTTAC+AGG 0.348049 2_3:+60012687 None:intergenic
AAGTCCCTTCTGCCTCTTCC+AGG 0.350515 2_3:+60012348 None:intergenic
GTTCAGTTTGTTAAGTTCAA+TGG 0.356308 2_3:-60011261 Msa0302980:three_prime_UTR
CAATGGAATTCAATATTCAT+TGG 0.361135 2_3:-60011244 Msa0302980:three_prime_UTR
AATATGACTCAAGATTCTTC+TGG 0.372511 2_3:-60012735 Msa0302980:CDS
TTTCGATCCAACTGATGAAC+AGG 0.398044 2_3:-60012769 Msa0302980:five_prime_UTR
GCATTAGCAAATGCTACTAT+TGG 0.399597 2_3:-60012840 Msa0302980:five_prime_UTR
GGAAATTAAATTCTGGTCTA+TGG 0.402271 2_3:-60012413 Msa0302980:CDS
ATTGCATTAATTCACAAGAA+TGG 0.410516 2_3:+60011149 None:intergenic
AGTAGAGAGTGTGAAGGAGA+TGG 0.412908 2_3:-60011441 Msa0302980:CDS
ATGGTGAGGAAATTAAATTC+TGG 0.421065 2_3:-60012420 Msa0302980:CDS
GGAATAAGAAAATTCTATCA+TGG 0.429067 2_3:+60011088 None:intergenic
ACAAGAGGGTCAGTTTCAAT+TGG 0.447254 2_3:-60011408 Msa0302980:CDS
GGCGTGATGGATCTGTTATT+GGG 0.455689 2_3:-60012545 Msa0302980:CDS
CTTCGTTTATGAGCAATATC+CGG 0.471781 2_3:-60012328 Msa0302980:intron
TTGTAAATTTGATTCATGGC+TGG 0.473514 2_3:-60011055 None:intergenic
GCTCTAGTTTGTAACAAAGA+AGG 0.478666 2_3:-60012519 Msa0302980:CDS
AACTCACTTGCACCTAAAGC+TGG 0.484241 2_3:+60011289 None:intergenic
AAATGCATGTGCTTCAGCTT+CGG 0.486804 2_3:+60012629 None:intergenic
GGTGCAGTGGAGATTGAGAT+TGG 0.489609 2_3:-60012882 Msa0302980:intron
AATTCATATGCTACACGTGT+TGG 0.492545 2_3:-60012603 Msa0302980:CDS
TGATGGATCTGTTATTGGGC+GGG 0.492905 2_3:-60012541 Msa0302980:CDS
TCTTGATCCTGTTCATCAGT+TGG 0.497177 2_3:+60012762 None:intergenic
CTTTATCAGTGAATGAATGA+TGG 0.507759 2_3:-60011364 Msa0302980:three_prime_UTR
AGAAACAAGGGTTGGTTGCA+GGG 0.508414 2_3:-60012451 Msa0302980:CDS
CTGCCTCTTCCAGGTGTCAG+AGG 0.510409 2_3:+60012357 None:intergenic
CTCAATAGTTCCTGTAACAT+CGG 0.518345 2_3:-60012697 Msa0302980:CDS
GAATAAGAAAATTCTATCAT+GGG 0.524623 2_3:+60011089 None:intergenic
TACAAACTCCTGGCCGATGT+AGG 0.525221 2_3:+60012653 None:intergenic
ACAAGCGGGAAAAGATTGTA+AGG 0.526019 2_3:-60012482 Msa0302980:CDS
CACACACATCCTCTGACACC+TGG 0.532917 2_3:-60012366 Msa0302980:CDS
TACAATAAGCTGCTGAAATG+TGG 0.534589 2_3:-60013712 Msa0302980:five_prime_UTR
CTCTCAAGATCAAGGCGTGA+TGG 0.535255 2_3:-60012558 Msa0302980:CDS
ACAAACTCCTGGCCGATGTA+GGG 0.537780 2_3:+60012654 None:intergenic
TTTCAGAATGCCTGACAAGC+GGG 0.539722 2_3:-60012496 Msa0302980:CDS
GACTAGTTCAGTCAATGTAC+AGG 0.545014 2_3:-60011185 Msa0302980:three_prime_UTR
CATCCTCTGACACCTGGAAG+AGG 0.555269 2_3:-60012360 Msa0302980:CDS
GACTCAAGATTCTTCTGGAG+TGG 0.558618 2_3:-60012730 Msa0302980:CDS
TAAGTAAGCTCTCAAGATCA+AGG 0.559347 2_3:-60012566 Msa0302980:CDS
CAAATTTACAAAATTAACCA+TGG 0.560215 2_3:+60011067 None:intergenic
TAAGGCAAAGGGCAGAAACA+AGG 0.561852 2_3:-60012464 Msa0302980:CDS
TCGAGAACTAACTCAACAGT+TGG 0.562574 2_3:-60011567 Msa0302980:CDS
TGACACCTGGAAGAGGCAGA+AGG 0.566441 2_3:-60012353 Msa0302980:CDS
AAATATAAATAATGCTACAC+AGG 0.567351 2_3:+60013739 None:intergenic
TGATGAACCCTACATCGGCC+AGG 0.568038 2_3:-60012661 Msa0302980:CDS
GGGAAAAGATTGTAAGGCAA+AGG 0.569600 2_3:-60012476 Msa0302980:CDS
GGAAAAGATTGTAAGGCAAA+GGG 0.570713 2_3:-60012475 Msa0302980:CDS
CAGCTTCGGATACAAACTCC+TGG 0.571675 2_3:+60012643 None:intergenic
GGACTGAGTTACAAGTTCAA+TGG 0.572522 2_3:+60011310 None:intergenic
CGATGTTACAGGAACTATTG+AGG 0.587098 2_3:+60012698 None:intergenic
GACACCTGGAAGAGGCAGAA+GGG 0.590498 2_3:-60012352 Msa0302980:CDS
GATGGAAGCTAAAGAACAAG+AGG 0.602786 2_3:-60011423 Msa0302980:CDS
TGTACTCATATAACAAGTCA+AGG 0.602934 2_3:+60011507 None:intergenic
GTGATGGATCTGTTATTGGG+CGG 0.611640 2_3:-60012542 Msa0302980:CDS
CAAAGGGCAGAAACAAGGGT+TGG 0.628129 2_3:-60012459 Msa0302980:CDS
AGCAAATGCTACTATTGGAG+AGG 0.632541 2_3:-60012835 Msa0302980:five_prime_UTR
GTTTCAGAATGCCTGACAAG+CGG 0.633841 2_3:-60012497 Msa0302980:CDS
GAGATTGGTGACTCCAGTAA+TGG 0.635105 2_3:-60012867 Msa0302980:five_prime_UTR
ACAATTGATGAACCCTACAT+CGG 0.643960 2_3:-60012666 Msa0302980:CDS
TGGTGACTCCAGTAATGGTG+AGG 0.657202 2_3:-60012862 Msa0302980:five_prime_UTR
AAGGCAAAGGGCAGAAACAA+GGG 0.671184 2_3:-60012463 Msa0302980:CDS
GCAGGGCAATGATTATGGTG+AGG 0.678028 2_3:-60012434 Msa0302980:CDS
GCACATAGTAGAGAGTGTGA+AGG 0.682029 2_3:-60011447 Msa0302980:CDS
ATGGAAGCTAAAGAACAAGA+GGG 0.719285 2_3:-60011422 Msa0302980:CDS
ATTCACAAGAATGGACTCAG+AGG 0.720890 2_3:+60011158 None:intergenic
CTTGTTATATGAGTACATCG+AGG 0.731335 2_3:-60011501 Msa0302980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAATAGATTAATAAATTT+TGG + chr2_3:60011325-60011344 None:intergenic 10.0%
!!! TTTTTTTCTTATAAGAAATT+AGG - chr2_3:60011603-60011622 Msa0302980:intron 10.0%
!!! TTTTTTCTTATAAGAAATTA+GGG - chr2_3:60011604-60011623 Msa0302980:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013172-60013191 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013172-60013191 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013172-60013191 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013172-60013191 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013172-60013191 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013172-60013191 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013172-60013191 None:intergenic 100.0%
!!! TCTTTTTCTTTTTTTCATTT+AGG - chr2_3:60011420-60011439 Msa0302980:CDS 15.0%
!!! TTTTTTTCATTTAGGTTTTT+GGG - chr2_3:60011428-60011447 Msa0302980:CDS 15.0%
!! GGGAAATTATTATTAATAAT+CGG - chr2_3:60011630-60011649 Msa0302980:intron 15.0%
!!! TCTTATATCAAATTTTTTGT+TGG - chr2_3:60011916-60011935 Msa0302980:intron 15.0%
!!! TTTTAAATAAAGATTTGTAG+AGG + chr2_3:60012603-60012622 None:intergenic 15.0%
!!! AATTTTGTAAATTTGATTCA+TGG - chr2_3:60013760-60013779 Msa0302980:five_prime_UTR 15.0%
!! AAATATAAATAATGCTACAC+AGG + chr2_3:60011083-60011102 None:intergenic 20.0%
!!! TGCTTCTTTTAGTAATAAAT+AGG - chr2_3:60011156-60011175 Msa0302980:three_prime_UTR 20.0%
!! TTGGATTTGATAAAACTTAA+CGG + chr2_3:60011306-60011325 None:intergenic 20.0%
!! AAAATATGAAAATAACCATC+TGG - chr2_3:60011360-60011379 Msa0302980:three_prime_UTR 20.0%
!! GAAAAAAATTGACAATCTTT+AGG + chr2_3:60011402-60011421 None:intergenic 20.0%
!!! CTTTTTTTCATTTAGGTTTT+TGG - chr2_3:60011427-60011446 Msa0302980:CDS 20.0%
!!! AAATATTTAGTGTCATTCAT+AGG - chr2_3:60011683-60011702 Msa0302980:intron 20.0%
!!! AATATTTAGTGTCATTCATA+GGG - chr2_3:60011684-60011703 Msa0302980:intron 20.0%
!!! TAGTATTTAGTTTAAACCAT+AGG - chr2_3:60011759-60011778 Msa0302980:intron 20.0%
!!! AGTATTTAGTTTAAACCATA+GGG - chr2_3:60011760-60011779 Msa0302980:intron 20.0%
!!! AATTCCAAAATTATCCTTTT+TGG + chr2_3:60011789-60011808 None:intergenic 20.0%
!! AAGTGAAAAGATTAAATGAA+AGG - chr2_3:60012661-60012680 Msa0302980:CDS 20.0%
!! GAATAAGAAAATTCTATCAT+GGG + chr2_3:60013733-60013752 None:intergenic 20.0%
!! CAAATTTACAAAATTAACCA+TGG + chr2_3:60013755-60013774 None:intergenic 20.0%
! ATGGTTATTACTGAGTTATA+AGG + chr2_3:60011268-60011287 None:intergenic 25.0%
! AATCTTTAGGTAAAGCTTAA+TGG + chr2_3:60011389-60011408 None:intergenic 25.0%
!!! TTTAAGTTGACTGATCTTTA+TGG - chr2_3:60011466-60011485 Msa0302980:CDS 25.0%
! ATGCTAACTTAACTAGTAAT+CGG - chr2_3:60011567-60011586 Msa0302980:CDS 25.0%
!! GTTTCCAAAAAGGATAATTT+TGG - chr2_3:60011782-60011801 Msa0302980:intron 25.0%
! AAAGAGTGAAAAAAGAGAAA+GGG + chr2_3:60012580-60012599 None:intergenic 25.0%
! GATGGAAATAAAAAACCAAA+AGG - chr2_3:60012687-60012706 Msa0302980:CDS 25.0%
! AAAAAACTATGCCCATTTAA+GGG + chr2_3:60012713-60012732 None:intergenic 25.0%
! TAAAAAACTATGCCCATTTA+AGG + chr2_3:60012714-60012733 None:intergenic 25.0%
! TTTACAATGAAAAATCATCG+AGG - chr2_3:60012737-60012756 Msa0302980:exon 25.0%
! CTGAAACCATTAGAATTTAA+AGG - chr2_3:60012765-60012784 Msa0302980:five_prime_UTR 25.0%
! TGAGATCCTTTAAATTCTAA+TGG + chr2_3:60012774-60012793 None:intergenic 25.0%
! GATATAAACATTGAAGTCTT+TGG + chr2_3:60012882-60012901 None:intergenic 25.0%
!!! TCCATTTTAATTTATCTTCG+AGG - chr2_3:60012916-60012935 Msa0302980:intron 25.0%
! ACCTCGAAGATAAATTAAAA+TGG + chr2_3:60012920-60012939 None:intergenic 25.0%
! AATCCATACACATGAAAAAT+AGG - chr2_3:60012948-60012967 Msa0302980:intron 25.0%
!!! TTACCTATTTTTCATGTGTA+TGG + chr2_3:60012954-60012973 None:intergenic 25.0%
! AAAATAGGTAAAATTACTCC+CGG - chr2_3:60012963-60012982 Msa0302980:intron 25.0%
!! ATTTTGCCAGGTAAATATTT+TGG - chr2_3:60013074-60013093 Msa0302980:intron 25.0%
! AATTCATGTTACATGTCTTT+GGG - chr2_3:60013135-60013154 Msa0302980:intron 25.0%
! AAAACAAATATGTAAGACGT+GGG + chr2_3:60013201-60013220 None:intergenic 25.0%
! AAAAACAAATATGTAAGACG+TGG + chr2_3:60013202-60013221 None:intergenic 25.0%
! CAATGGAATTCAATATTCAT+TGG - chr2_3:60013575-60013594 Msa0302980:intron 25.0%
! ATTGCATTAATTCACAAGAA+TGG + chr2_3:60013673-60013692 None:intergenic 25.0%
! GGAATAAGAAAATTCTATCA+TGG + chr2_3:60013734-60013753 None:intergenic 25.0%
!! GATAGAATTTTCTTATTCCA+TGG - chr2_3:60013735-60013754 Msa0302980:five_prime_UTR 25.0%
ATAACTCAGTAATAACCATC+TGG - chr2_3:60011269-60011288 Msa0302980:three_prime_UTR 30.0%
! GATTTTGTGCAAAGTCTTTT+TGG - chr2_3:60011537-60011556 Msa0302980:CDS 30.0%
TTCTTATAAGAAATTAGGGC+AGG - chr2_3:60011608-60011627 Msa0302980:intron 30.0%
TCTTATAAGAAATTAGGGCA+GGG - chr2_3:60011609-60011628 Msa0302980:intron 30.0%
!!! ATCGGTTTTATTTGTTGAAG+TGG - chr2_3:60011648-60011667 Msa0302980:intron 30.0%
!!! GTTTTATTTGTTGAAGTGGA+GGG - chr2_3:60011652-60011671 Msa0302980:intron 30.0%
AATATGACTCAAGATTCTTC+TGG - chr2_3:60012084-60012103 Msa0302980:intron 30.0%
ATGGTGAGGAAATTAAATTC+TGG - chr2_3:60012399-60012418 Msa0302980:CDS 30.0%
GGAAATTAAATTCTGGTCTA+TGG - chr2_3:60012406-60012425 Msa0302980:CDS 30.0%
!! TTTCTAGAACTGCAAATAAC+TGG + chr2_3:60012531-60012550 None:intergenic 30.0%
AAGAGTGAAAAAAGAGAAAG+GGG + chr2_3:60012579-60012598 None:intergenic 30.0%
GAAAGAGTGAAAAAAGAGAA+AGG + chr2_3:60012581-60012600 None:intergenic 30.0%
TGAAACATAGTAAAACAGTG+TGG - chr2_3:60012626-60012645 Msa0302980:CDS 30.0%
AGATTAAATGAAAGGAGAGA+TGG - chr2_3:60012669-60012688 Msa0302980:CDS 30.0%
AAATAGGTAAAATTACTCCC+GGG - chr2_3:60012964-60012983 Msa0302980:intron 30.0%
CAATTCATGTTACATGTCTT+TGG - chr2_3:60013134-60013153 Msa0302980:intron 30.0%
AAACAAATATGTAAGACGTG+GGG + chr2_3:60013200-60013219 None:intergenic 30.0%
! TTTTTATGCAATTTCCAGAG+TGG - chr2_3:60013217-60013236 Msa0302980:intron 30.0%
TGTACTCATATAACAAGTCA+AGG + chr2_3:60013315-60013334 None:intergenic 30.0%
CTTTATCAGTGAATGAATGA+TGG - chr2_3:60013455-60013474 Msa0302980:intron 30.0%
!! GTTCAGTTTGTTAAGTTCAA+TGG - chr2_3:60013558-60013577 Msa0302980:intron 30.0%
TACAATAAGCTGCTGAAATG+TGG - chr2_3:60011107-60011126 Msa0302980:three_prime_UTR 35.0%
TCTTTCTTCTATGTTTGAGC+TGG - chr2_3:60011213-60011232 Msa0302980:three_prime_UTR 35.0%
CTTTCTTCTATGTTTGAGCT+GGG - chr2_3:60011214-60011233 Msa0302980:three_prime_UTR 35.0%
! GTAATAACCATCTGGAATTC+TGG - chr2_3:60011277-60011296 Msa0302980:three_prime_UTR 35.0%
TTTGCACAAAATCAAAGCGA+AGG + chr2_3:60011530-60011549 None:intergenic 35.0%
CTTATAAGAAATTAGGGCAG+GGG - chr2_3:60011610-60011629 Msa0302980:intron 35.0%
!!! GGTTTTATTTGTTGAAGTGG+AGG - chr2_3:60011651-60011670 Msa0302980:intron 35.0%
!! ATTAGCAGCTTTGACTTGTA+TGG - chr2_3:60011715-60011734 Msa0302980:intron 35.0%
AAACCATAGGGTTTCCAAAA+AGG - chr2_3:60011772-60011791 Msa0302980:intron 35.0%
!! TATCCTTTTTGGAAACCCTA+TGG + chr2_3:60011778-60011797 None:intergenic 35.0%
!!! CAAATTTTTTGTTGGTGCAG+TGG - chr2_3:60011924-60011943 Msa0302980:intron 35.0%
GCATTAGCAAATGCTACTAT+TGG - chr2_3:60011979-60011998 Msa0302980:intron 35.0%
CTCAATAGTTCCTGTAACAT+CGG - chr2_3:60012122-60012141 Msa0302980:intron 35.0%
ACAATTGATGAACCCTACAT+CGG - chr2_3:60012153-60012172 Msa0302980:intron 35.0%
AATTCATATGCTACACGTGT+TGG - chr2_3:60012216-60012235 Msa0302980:intron 35.0%
TAAGTAAGCTCTCAAGATCA+AGG - chr2_3:60012253-60012272 Msa0302980:intron 35.0%
! GCTCTAGTTTGTAACAAAGA+AGG - chr2_3:60012300-60012319 Msa0302980:intron 35.0%
GGAAAAGATTGTAAGGCAAA+GGG - chr2_3:60012344-60012363 Msa0302980:CDS 35.0%
CTTCGTTTATGAGCAATATC+CGG - chr2_3:60012491-60012510 Msa0302980:CDS 35.0%
!! TGCAGTTCTAGAAAAGTGTA+TGG - chr2_3:60012537-60012556 Msa0302980:CDS 35.0%
! AGAAAAGTGTATGGTCTGTT+TGG - chr2_3:60012546-60012565 Msa0302980:CDS 35.0%
AAAACCAAAAGGCCCTTAAA+TGG - chr2_3:60012698-60012717 Msa0302980:CDS 35.0%
AAACCAAAAGGCCCTTAAAT+GGG - chr2_3:60012699-60012718 Msa0302980:CDS 35.0%
AATAGGTAAAATTACTCCCG+GGG - chr2_3:60012965-60012984 Msa0302980:intron 35.0%
ATGCACTTAACTTAGAGTGT+TGG - chr2_3:60012992-60013011 Msa0302980:intron 35.0%
!! GAAACTCGAAGTATCGATTT+GGG + chr2_3:60013047-60013066 None:intergenic 35.0%
!! AGAAACTCGAAGTATCGATT+TGG + chr2_3:60013048-60013067 None:intergenic 35.0%
! AAATCGATACTTCGAGTTTC+TGG - chr2_3:60013047-60013066 Msa0302980:intron 35.0%
CTGTTGCCAAAATATTTACC+TGG + chr2_3:60013083-60013102 None:intergenic 35.0%
AACAAATATGTAAGACGTGG+GGG + chr2_3:60013199-60013218 None:intergenic 35.0%
! CAAGTCAAGGTTCCTTTTAT+AGG + chr2_3:60013302-60013321 None:intergenic 35.0%
! CTTGTTATATGAGTACATCG+AGG - chr2_3:60013318-60013337 Msa0302980:intron 35.0%
ATGGAAGCTAAAGAACAAGA+GGG - chr2_3:60013397-60013416 Msa0302980:intron 35.0%
AAAGCTTAATGGCATCCAGA+TGG + chr2_3:60011378-60011397 None:intergenic 40.0%
CAAGTCAAAGCTGCTAATAC+AGG + chr2_3:60011713-60011732 None:intergenic 40.0%
AGCAAATGCTACTATTGGAG+AGG - chr2_3:60011984-60012003 Msa0302980:intron 40.0%
TTTCGATCCAACTGATGAAC+AGG - chr2_3:60012050-60012069 Msa0302980:intron 40.0%
TCTTGATCCTGTTCATCAGT+TGG + chr2_3:60012060-60012079 None:intergenic 40.0%
CAGGAACTATTGAGGTGATT+TGG + chr2_3:60012116-60012135 None:intergenic 40.0%
CGATGTTACAGGAACTATTG+AGG + chr2_3:60012124-60012143 None:intergenic 40.0%
GTTCTCATAACCGATGTTAC+AGG + chr2_3:60012135-60012154 None:intergenic 40.0%
AAATGCATGTGCTTCAGCTT+CGG + chr2_3:60012193-60012212 None:intergenic 40.0%
ACAAGCGGGAAAAGATTGTA+AGG - chr2_3:60012337-60012356 Msa0302980:CDS 40.0%
GGGAAAAGATTGTAAGGCAA+AGG - chr2_3:60012343-60012362 Msa0302980:CDS 40.0%
ACTGGTAGAACATGACTAAC+CGG + chr2_3:60012513-60012532 None:intergenic 40.0%
ATAGGTAAAATTACTCCCGG+GGG - chr2_3:60012966-60012985 Msa0302980:intron 40.0%
!!! GTTTCTGGAGTAATTTTGCC+AGG - chr2_3:60013062-60013081 Msa0302980:intron 40.0%
ACAAATATGTAAGACGTGGG+GGG + chr2_3:60013198-60013217 None:intergenic 40.0%
TCGAGAACTAACTCAACAGT+TGG - chr2_3:60013252-60013271 Msa0302980:intron 40.0%
AGCGAGCTGAAACCTATAAA+AGG - chr2_3:60013287-60013306 Msa0302980:intron 40.0%
GATGGAAGCTAAAGAACAAG+AGG - chr2_3:60013396-60013415 Msa0302980:intron 40.0%
ACAAGAGGGTCAGTTTCAAT+TGG - chr2_3:60013411-60013430 Msa0302980:intron 40.0%
GGACTGAGTTACAAGTTCAA+TGG + chr2_3:60013512-60013531 None:intergenic 40.0%
TTGTAACTCAGTCCAGCTTT+AGG - chr2_3:60013518-60013537 Msa0302980:intron 40.0%
! GACTAGTTCAGTCAATGTAC+AGG - chr2_3:60013634-60013653 Msa0302980:intron 40.0%
! ATTCACAAGAATGGACTCAG+AGG + chr2_3:60013664-60013683 None:intergenic 40.0%
! GAGATTGGTGACTCCAGTAA+TGG - chr2_3:60011952-60011971 Msa0302980:intron 45.0%
TGCTAATGCCTCACCATTAC+TGG + chr2_3:60011968-60011987 None:intergenic 45.0%
! GACTCAAGATTCTTCTGGAG+TGG - chr2_3:60012089-60012108 Msa0302980:intron 45.0%
!! AGGCGTGATGGATCTGTTAT+TGG - chr2_3:60012273-60012292 Msa0302980:intron 45.0%
!! GGCGTGATGGATCTGTTATT+GGG - chr2_3:60012274-60012293 Msa0302980:intron 45.0%
!! GTGATGGATCTGTTATTGGG+CGG - chr2_3:60012277-60012296 Msa0302980:intron 45.0%
! TGATGGATCTGTTATTGGGC+GGG - chr2_3:60012278-60012297 Msa0302980:intron 45.0%
GTTTCAGAATGCCTGACAAG+CGG - chr2_3:60012322-60012341 Msa0302980:intron 45.0%
TTTCAGAATGCCTGACAAGC+GGG - chr2_3:60012323-60012342 Msa0302980:intron 45.0%
! ACAATCTTTTCCCGCTTGTC+AGG + chr2_3:60012336-60012355 None:intergenic 45.0%
TAAGGCAAAGGGCAGAAACA+AGG - chr2_3:60012355-60012374 Msa0302980:CDS 45.0%
AAGGCAAAGGGCAGAAACAA+GGG - chr2_3:60012356-60012375 Msa0302980:CDS 45.0%
!! AGAAACAAGGGTTGGTTGCA+GGG - chr2_3:60012368-60012387 Msa0302980:CDS 45.0%
TGGTTGCAGGGCAATGATTA+TGG - chr2_3:60012380-60012399 Msa0302980:CDS 45.0%
! ATGCCCATTTAAGGGCCTTT+TGG + chr2_3:60012705-60012724 None:intergenic 45.0%
AAGTTAAGTGCATAGACCCC+CGG + chr2_3:60012985-60013004 None:intergenic 45.0%
AAATATGTAAGACGTGGGGG+GGG + chr2_3:60013196-60013215 None:intergenic 45.0%
CAAATATGTAAGACGTGGGG+GGG + chr2_3:60013197-60013216 None:intergenic 45.0%
! GCACATAGTAGAGAGTGTGA+AGG - chr2_3:60013372-60013391 Msa0302980:intron 45.0%
! AGTAGAGAGTGTGAAGGAGA+TGG - chr2_3:60013378-60013397 Msa0302980:intron 45.0%
AACTCACTTGCACCTAAAGC+TGG + chr2_3:60013533-60013552 None:intergenic 45.0%
ACGGCATCCAGAATTCCAGA+TGG + chr2_3:60011287-60011306 None:intergenic 50.0%
CCGAGTGATACTCTACAGAG+CGG + chr2_3:60011887-60011906 None:intergenic 50.0%
! CCGCTCTGTAGAGTATCACT+CGG - chr2_3:60011884-60011903 Msa0302980:intron 50.0%
GGTGCAGTGGAGATTGAGAT+TGG - chr2_3:60011937-60011956 Msa0302980:intron 50.0%
TGGTGACTCCAGTAATGGTG+AGG - chr2_3:60011957-60011976 Msa0302980:intron 50.0%
ACAAACTCCTGGCCGATGTA+GGG + chr2_3:60012168-60012187 None:intergenic 50.0%
TACAAACTCCTGGCCGATGT+AGG + chr2_3:60012169-60012188 None:intergenic 50.0%
CAGCTTCGGATACAAACTCC+TGG + chr2_3:60012179-60012198 None:intergenic 50.0%
CTCTCAAGATCAAGGCGTGA+TGG - chr2_3:60012261-60012280 Msa0302980:intron 50.0%
CAAAGGGCAGAAACAAGGGT+TGG - chr2_3:60012360-60012379 Msa0302980:CDS 50.0%
!! CAGAAACAAGGGTTGGTTGC+AGG - chr2_3:60012367-60012386 Msa0302980:CDS 50.0%
GCAGGGCAATGATTATGGTG+AGG - chr2_3:60012385-60012404 Msa0302980:CDS 50.0%
AGTTAAGTGCATAGACCCCC+GGG + chr2_3:60012984-60013003 None:intergenic 50.0%
AATATGTAAGACGTGGGGGG+GGG + chr2_3:60013195-60013214 None:intergenic 50.0%
TGATGAACCCTACATCGGCC+AGG - chr2_3:60012158-60012177 Msa0302980:intron 55.0%
CACACACATCCTCTGACACC+TGG - chr2_3:60012453-60012472 Msa0302980:CDS 55.0%
CATCCTCTGACACCTGGAAG+AGG - chr2_3:60012459-60012478 Msa0302980:CDS 55.0%
TGACACCTGGAAGAGGCAGA+AGG - chr2_3:60012466-60012485 Msa0302980:CDS 55.0%
GACACCTGGAAGAGGCAGAA+GGG - chr2_3:60012467-60012486 Msa0302980:CDS 55.0%
AAGTCCCTTCTGCCTCTTCC+AGG + chr2_3:60012474-60012493 None:intergenic 55.0%
ATATGTAAGACGTGGGGGGG+GGG + chr2_3:60013194-60013213 None:intergenic 55.0%
GAACTCTGTCGTGTCCACTC+TGG + chr2_3:60013234-60013253 None:intergenic 55.0%
CTGCCTCTTCCAGGTGTCAG+AGG + chr2_3:60012465-60012484 None:intergenic 60.0%
TATGTAAGACGTGGGGGGGG+GGG + chr2_3:60013193-60013212 None:intergenic 60.0%
GGGGGGGGGGAACTGAAAAG+GGG + chr2_3:60013162-60013181 None:intergenic 65.0%
GGGGGGGGGGGAACTGAAAA+GGG + chr2_3:60013163-60013182 None:intergenic 65.0%
ATGTAAGACGTGGGGGGGGG+GGG + chr2_3:60013192-60013211 None:intergenic 65.0%
GGGGGGGGGGGGAACTGAAA+AGG + chr2_3:60013164-60013183 None:intergenic 70.0%
TGTAAGACGTGGGGGGGGGG+GGG + chr2_3:60013191-60013210 None:intergenic 70.0%
TAAGACGTGGGGGGGGGGGG+GGG + chr2_3:60013189-60013208 None:intergenic 75.0%
GTAAGACGTGGGGGGGGGGG+GGG + chr2_3:60013190-60013209 None:intergenic 75.0%
! AAGACGTGGGGGGGGGGGGG+GGG + chr2_3:60013188-60013207 None:intergenic 80.0%
! AGACGTGGGGGGGGGGGGGG+GGG + chr2_3:60013187-60013206 None:intergenic 85.0%
! ACGTGGGGGGGGGGGGGGGG+GGG + chr2_3:60013185-60013204 None:intergenic 90.0%
! GACGTGGGGGGGGGGGGGGG+GGG + chr2_3:60013186-60013205 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013182-60013201 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013183-60013202 None:intergenic 95.0%
! CGTGGGGGGGGGGGGGGGGG+GGG + chr2_3:60013184-60013203 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 60011056 60013785 60011056 ID=Msa0302980;Name=Msa0302980
chr2_3 mRNA 60011056 60013785 60011056 ID=Msa0302980-mRNA-1;Parent=Msa0302980;Name=Msa0302980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=265|1|1|1|0.5|0.66|3|341|211
chr2_3 exon 60011056 60011606 60011056 ID=Msa0302980-mRNA-1:exon:19543;Parent=Msa0302980-mRNA-1
chr2_3 exon 60012329 60012897 60012329 ID=Msa0302980-mRNA-1:exon:19542;Parent=Msa0302980-mRNA-1
chr2_3 exon 60013664 60013785 60013664 ID=Msa0302980-mRNA-1:exon:19541;Parent=Msa0302980-mRNA-1
chr2_3 five_prime_UTR 60013664 60013785 60013664 ID=Msa0302980-mRNA-1:five_prime_utr;Parent=Msa0302980-mRNA-1
chr2_3 five_prime_UTR 60012755 60012897 60012755 ID=Msa0302980-mRNA-1:five_prime_utr;Parent=Msa0302980-mRNA-1
chr2_3 CDS 60012329 60012754 60012329 ID=Msa0302980-mRNA-1:cds;Parent=Msa0302980-mRNA-1
chr2_3 CDS 60011397 60011606 60011397 ID=Msa0302980-mRNA-1:cds;Parent=Msa0302980-mRNA-1
chr2_3 three_prime_UTR 60011056 60011396 60011056 ID=Msa0302980-mRNA-1:three_prime_utr;Parent=Msa0302980-mRNA-1
Gene Sequence

>Msa0302980

ATGACTCAAGATTCTTCTGGAGTGGACCAAATCACCTCAATAGTTCCTGTAACATCGGTTATGAGAACAATTGATGAACCCTACATCGGCCAGGAGTTTGTATCCGAAGCTGAAGCACATGCATTTTATAATTCATATGCTACACGTGTTGGATTCGTCATACGTGTAAGTAAGCTCTCAAGATCAAGGCGTGATGGATCTGTTATTGGGCGGGCTCTAGTTTGTAACAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAATTAAATTCTGGTCTATGGTCTATAACAAAGTTTGTAAAAGAGCACACACATCCTCTGACACCTGGAAGAGGCAGAAGGGACTTCGTTTATGAGCAATATCCGAGTGGACACGACAGAGTTCGAGAACTAACTCAACAGTTGGCTATAGAGAAAAAGCGAGCTGAAACCTATAAAAGGAACCTTGACTTGTTATATGAGTACATCGAGGAGCATAATGAAGCTGTTTCAAAGAAGATACAGCACATAGTAGAGAGTGTGAAGGAGATGGAAGCTAAAGAACAAGAGGGTCAGTTTCAATTGGCTGTTATCTAG

Protein sequence

>Msa0302980

MTQDSSGVDQITSIVPVTSVMRTIDEPYIGQEFVSEAEAHAFYNSYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVRELTQQLAIEKKRAETYKRNLDLLYEYIEEHNEAVSKKIQHIVESVKEMEAKEQEGQFQLAVI*