Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768530 | XP_013453837.1 | 98.598 | 428 | 6 | 0 | 1 | 428 | 1 | 428 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768530 | sp|Q9ZQ89|UPS2_ARATH | 79.800 | 401 | 78 | 2 | 27 | 427 | 1 | 398 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768530 | A0A072UFK6 | 98.598 | 428 | 6 | 0 | 1 | 428 | 1 | 428 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036140 | Msa0768530 | 0.831808 | 1.353104e-55 | -8.615850e-47 |
| Msa0043980 | Msa0768530 | 0.805269 | 1.447990e-49 | -8.615850e-47 |
| Msa0079070 | Msa0768530 | 0.817481 | 3.225339e-52 | -8.615850e-47 |
| Msa0084080 | Msa0768530 | 0.817163 | 3.801976e-52 | -8.615850e-47 |
| Msa0095560 | Msa0768530 | 0.808335 | 3.257513e-50 | -8.615850e-47 |
| Msa0638350 | Msa0768530 | 0.810862 | 9.334326e-51 | -8.615850e-47 |
| Msa0703780 | Msa0768530 | 0.807074 | 6.036947e-50 | -8.615850e-47 |
| Msa0709270 | Msa0768530 | 0.800559 | 1.361665e-48 | -8.615850e-47 |
| Msa0724210 | Msa0768530 | 0.806415 | 8.320095e-50 | -8.615850e-47 |
| Msa0756320 | Msa0768530 | 0.811057 | 8.468414e-51 | -8.615850e-47 |
| Msa0768530 | Msa0784480 | 0.811307 | 7.474389e-51 | -8.615850e-47 |
| Msa0768530 | Msa0797770 | 0.830454 | 2.910349e-55 | -8.615850e-47 |
| Msa0768530 | Msa0817460 | 0.802049 | 6.744418e-49 | -8.615850e-47 |
| Msa0768530 | Msa0818060 | 0.807651 | 4.554930e-50 | -8.615850e-47 |
| Msa0768530 | Msa0831850 | 0.814776 | 1.296492e-51 | -8.615850e-47 |
| Msa0768530 | Msa0835230 | 0.838743 | 2.398634e-57 | -8.615850e-47 |
| Msa0768530 | Msa0870380 | 0.827499 | 1.512452e-54 | -8.615850e-47 |
| Msa0768530 | Msa0927310 | 0.804146 | 2.484943e-49 | -8.615850e-47 |
| Msa0768530 | Msa0965080 | 0.808325 | 3.273669e-50 | -8.615850e-47 |
| Msa0768530 | Msa0965290 | 0.804077 | 2.568791e-49 | -8.615850e-47 |
| Msa0768530 | Msa0999680 | 0.805005 | 1.644634e-49 | -8.615850e-47 |
| Msa0768530 | Msa1035480 | 0.809928 | 1.484350e-50 | -8.615850e-47 |
| Msa0768530 | Msa1039710 | -0.804436 | 2.162639e-49 | -8.615850e-47 |
| Msa0768530 | Msa1048220 | 0.802503 | 5.438470e-49 | -8.615850e-47 |
| Msa0768530 | Msa1054990 | 0.808646 | 2.795678e-50 | -8.615850e-47 |
| Msa0768530 | Msa1056240 | 0.804533 | 2.064254e-49 | -8.615850e-47 |
| Msa0768530 | Msa1083840 | 0.800712 | 1.267021e-48 | -8.615850e-47 |
| Msa0768530 | Msa1104560 | 0.817831 | 2.689117e-52 | -8.615850e-47 |
| Msa0768530 | Msa1110120 | 0.818147 | 2.281745e-52 | -8.615850e-47 |
| Msa0768530 | Msa1122150 | 0.814093 | 1.836582e-51 | -8.615850e-47 |
| Msa0768530 | Msa1129550 | 0.815545 | 8.752224e-52 | -8.615850e-47 |
| Msa0768530 | Msa1129730 | 0.818160 | 2.266303e-52 | -8.615850e-47 |
| Msa0768530 | Msa1147740 | 0.802743 | 4.854151e-49 | -8.615850e-47 |
| Msa0768530 | Msa1152440 | 0.803332 | 3.666346e-49 | -8.615850e-47 |
| Msa0768530 | Msa1162780 | 0.823261 | 1.523677e-53 | -8.615850e-47 |
| Msa0768530 | Msa1190920 | 0.802250 | 6.132313e-49 | -8.615850e-47 |
| Msa0768530 | Msa1204530 | 0.800209 | 1.604837e-48 | -8.615850e-47 |
| Msa0768530 | Msa1204630 | 0.809260 | 2.066396e-50 | -8.615850e-47 |
| Msa0768530 | Msa1212940 | 0.801516 | 8.678633e-49 | -8.615850e-47 |
| Msa0768530 | Msa1225130 | 0.826023 | 3.405534e-54 | -8.615850e-47 |
| Msa0768530 | Msa1226460 | 0.804457 | 2.141062e-49 | -8.615850e-47 |
| Msa0768530 | Msa1277690 | 0.831220 | 1.888809e-55 | -8.615850e-47 |
| Msa0768530 | Msa1305810 | 0.813273 | 2.782985e-51 | -8.615850e-47 |
| Msa0768530 | Msa1308870 | 0.801546 | 8.555686e-49 | -8.615850e-47 |
| Msa0768530 | Msa1331000 | 0.826420 | 2.740150e-54 | -8.615850e-47 |
| Msa0768530 | Msa1368360 | 0.807066 | 6.061768e-50 | -8.615850e-47 |
| Msa0768530 | Msa1397120 | 0.818160 | 2.266184e-52 | -8.615850e-47 |
| Msa0768530 | Msa1403890 | 0.813256 | 2.806661e-51 | -8.615850e-47 |
| Msa0768530 | Msa1420820 | 0.805444 | 1.330971e-49 | -8.615850e-47 |
| Msa0768530 | Msa1427230 | 0.801377 | 9.265264e-49 | -8.615850e-47 |
| Msa0768530 | Msa1436650 | 0.805109 | 1.564060e-49 | -8.615850e-47 |
| Msa0768530 | Msa1448560 | 0.802781 | 4.767743e-49 | -8.615850e-47 |
| Msa0131770 | Msa0768530 | 0.803501 | 3.382454e-49 | -8.615850e-47 |
| Msa0138020 | Msa0768530 | 0.809697 | 1.664896e-50 | -8.615850e-47 |
| Msa0160960 | Msa0768530 | 0.800628 | 1.318519e-48 | -8.615850e-47 |
| Msa0204840 | Msa0768530 | 0.809358 | 1.968539e-50 | -8.615850e-47 |
| Msa0206010 | Msa0768530 | 0.806861 | 6.695216e-50 | -8.615850e-47 |
| Msa0226180 | Msa0768530 | 0.815079 | 1.111023e-51 | -8.615850e-47 |
| Msa0232020 | Msa0768530 | 0.803988 | 2.679560e-49 | -8.615850e-47 |
| Msa0367870 | Msa0768530 | 0.807890 | 4.051220e-50 | -8.615850e-47 |
| Msa0376910 | Msa0768530 | 0.807127 | 5.881972e-50 | -8.615850e-47 |
| Msa0455760 | Msa0768530 | 0.809800 | 1.581902e-50 | -8.615850e-47 |
| Msa0464100 | Msa0768530 | 0.824368 | 8.383879e-54 | -8.615850e-47 |
| Msa0464120 | Msa0768530 | 0.830691 | 2.546767e-55 | -8.615850e-47 |
| Msa0471900 | Msa0768530 | 0.829281 | 5.619091e-55 | -8.615850e-47 |
| Msa0267370 | Msa0768530 | 0.814918 | 1.206415e-51 | -8.615850e-47 |
| Msa0290870 | Msa0768530 | 0.802862 | 4.586756e-49 | -8.615850e-47 |
| Msa0326110 | Msa0768530 | 0.806531 | 7.860655e-50 | -8.615850e-47 |
| Msa0363790 | Msa0768530 | 0.823906 | 1.076442e-53 | -8.615850e-47 |
| Msa0512750 | Msa0768530 | 0.800131 | 1.664540e-48 | -8.615850e-47 |
| Msa0518380 | Msa0768530 | 0.824556 | 7.573300e-54 | -8.615850e-47 |
| Msa0559500 | Msa0768530 | 0.805012 | 1.639157e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768530 | MtrunA17_Chr5g0419571 | 98.598 | 428 | 6 | 0 | 1 | 428 | 1 | 428 | 0.0 | 857 |
| Msa0768530 | MtrunA17_Chr5g0419251 | 81.975 | 405 | 61 | 4 | 27 | 427 | 1 | 397 | 0.0 | 643 |
| Msa0768530 | MtrunA17_Chr5g0419581 | 79.208 | 404 | 78 | 3 | 27 | 427 | 1 | 401 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768530 | AT2G03530.2 | 79.800 | 401 | 78 | 2 | 27 | 427 | 1 | 398 | 0.0 | 625 |
| Msa0768530 | AT2G03530.1 | 79.800 | 401 | 78 | 2 | 27 | 427 | 1 | 398 | 0.0 | 625 |
| Msa0768530 | AT2G03530.4 | 79.683 | 379 | 74 | 2 | 27 | 405 | 1 | 376 | 0.0 | 592 |
| Msa0768530 | AT2G03590.2 | 74.564 | 401 | 91 | 3 | 27 | 427 | 1 | 390 | 0.0 | 583 |
| Msa0768530 | AT2G03590.1 | 74.564 | 401 | 91 | 3 | 27 | 427 | 1 | 390 | 0.0 | 583 |
| Msa0768530 | AT2G03520.1 | 71.072 | 401 | 116 | 0 | 27 | 427 | 1 | 401 | 0.0 | 559 |
| Msa0768530 | AT1G26440.3 | 68.049 | 410 | 127 | 2 | 20 | 427 | 2 | 409 | 0.0 | 542 |
| Msa0768530 | AT1G26440.2 | 68.049 | 410 | 127 | 2 | 20 | 427 | 2 | 409 | 0.0 | 542 |
| Msa0768530 | AT1G26440.1 | 62.195 | 410 | 115 | 3 | 20 | 427 | 2 | 373 | 3.30e-168 | 477 |
| Msa0768530 | AT1G26440.6 | 61.707 | 410 | 118 | 3 | 20 | 427 | 2 | 374 | 7.42e-168 | 476 |
| Msa0768530 | AT2G03530.5 | 77.532 | 316 | 68 | 2 | 112 | 427 | 1 | 313 | 6.19e-166 | 469 |
| Msa0768530 | AT2G03530.3 | 77.532 | 316 | 68 | 2 | 112 | 427 | 1 | 313 | 6.19e-166 | 469 |
| Msa0768530 | AT1G26440.7 | 68.111 | 323 | 101 | 1 | 105 | 427 | 16 | 336 | 2.49e-153 | 438 |
| Msa0768530 | AT1G26440.8 | 68.111 | 323 | 101 | 1 | 105 | 427 | 16 | 336 | 2.49e-153 | 438 |
| Msa0768530 | AT2G03600.4 | 62.824 | 347 | 97 | 6 | 27 | 363 | 1 | 325 | 3.18e-147 | 422 |
| Msa0768530 | AT2G03600.5 | 61.808 | 343 | 99 | 5 | 27 | 363 | 1 | 317 | 4.14e-145 | 417 |
| Msa0768530 | AT2G03600.6 | 67.636 | 275 | 66 | 3 | 27 | 297 | 1 | 256 | 3.58e-129 | 373 |
| Msa0768530 | AT2G03600.1 | 67.636 | 275 | 66 | 3 | 27 | 297 | 1 | 256 | 3.58e-129 | 373 |
| Msa0768530 | AT1G26440.5 | 60.062 | 323 | 92 | 2 | 105 | 427 | 16 | 301 | 9.05e-128 | 371 |
| Msa0768530 | AT2G03600.2 | 62.712 | 295 | 64 | 4 | 27 | 294 | 1 | 276 | 2.85e-123 | 359 |
| Msa0768530 | AT1G26440.4 | 64.341 | 258 | 90 | 1 | 170 | 427 | 92 | 347 | 9.38e-108 | 322 |
| Msa0768530 | AT1G26440.4 | 70.707 | 99 | 27 | 1 | 20 | 116 | 2 | 100 | 9.47e-36 | 135 |
| Msa0768530 | AT2G03600.3 | 65.263 | 190 | 46 | 2 | 112 | 297 | 1 | 174 | 3.02e-77 | 238 |
Find 101 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTGACAAATTATT+TGG | 0.104477 | 5_2:-34867835 | Msa0768530:CDS |
| TGGGAATGGCCTTCAGTTTA+TGG | 0.150076 | 5_2:-34867760 | Msa0768530:CDS |
| GCAAGTTGAGTTAAGAAATT+TGG | 0.189492 | 5_2:+34869710 | None:intergenic |
| GCTGGTTTCCTTTGTGGATT+TGG | 0.212587 | 5_2:-34867780 | Msa0768530:CDS |
| TTACTCAATCACCAATTTCT+TGG | 0.250935 | 5_2:-34869789 | Msa0768530:CDS |
| TGAAAACAGAAGAGCTATTA+AGG | 0.260814 | 5_2:-34868198 | Msa0768530:intron |
| ATTGTTACTTGCAGGATAAT+TGG | 0.271037 | 5_2:-34869445 | Msa0768530:intron |
| CTTGAGCTTAGCTTGATTAT+CGG | 0.289315 | 5_2:+34869017 | None:intergenic |
| CTGGTTTCCTTTGTGGATTT+GGG | 0.304929 | 5_2:-34867779 | Msa0768530:CDS |
| CACAAATGTATATAGTAATA+AGG | 0.321507 | 5_2:-34867275 | Msa0768530:three_prime_UTR |
| ATTATAATTGCCTTTACATT+TGG | 0.325118 | 5_2:-34869761 | Msa0768530:CDS |
| GCAAGCATAACTGTTGTTAT+AGG | 0.325327 | 5_2:-34869314 | Msa0768530:intron |
| TGCTGAGTTGAAAATGTATT+TGG | 0.325479 | 5_2:-34869933 | Msa0768530:CDS |
| TATAATAGCAGCCAAGAAAT+TGG | 0.330308 | 5_2:+34869778 | None:intergenic |
| TTGTTGGCTGGTTTCCTTTG+TGG | 0.337117 | 5_2:-34867786 | Msa0768530:CDS |
| TGGAAGAGGCTGGGCCTTGT+TGG | 0.345029 | 5_2:-34867802 | Msa0768530:CDS |
| GGGAATGGCCTTCAGTTTAT+GGG | 0.352549 | 5_2:-34867759 | Msa0768530:CDS |
| AGAGGCTGGGCCTTGTTGGC+TGG | 0.355695 | 5_2:-34867798 | Msa0768530:CDS |
| ACATTTGGTCAGATAGGAAA+TGG | 0.356798 | 5_2:-34869746 | Msa0768530:CDS |
| AGGAAGAACATATATCTTAC+TGG | 0.373403 | 5_2:-34867415 | Msa0768530:CDS |
| GCCTTTACATTTGGTCAGAT+AGG | 0.376790 | 5_2:-34869752 | Msa0768530:CDS |
| CTCAATAAGAATGTTAACTT+TGG | 0.378588 | 5_2:+34867161 | None:intergenic |
| TGTGAGTTCAAACTAATCAT+TGG | 0.388279 | 5_2:+34867294 | None:intergenic |
| CAGTATGCATTTGCTCTAGT+TGG | 0.397774 | 5_2:-34869362 | Msa0768530:CDS |
| GGTGTGCTCATGGCATCATC+AGG | 0.399673 | 5_2:-34867360 | Msa0768530:CDS |
| GGTGGTGTGGTCCTTAGCCT+TGG | 0.413336 | 5_2:-34869398 | Msa0768530:CDS |
| TCATCATTGACAAATTATTT+GGG | 0.414871 | 5_2:-34867834 | Msa0768530:CDS |
| TGACAAATTATTTGGGAGAC+TGG | 0.417397 | 5_2:-34867827 | Msa0768530:CDS |
| TTTCTTAACTCAACTTGCTC+AGG | 0.423669 | 5_2:-34869705 | Msa0768530:intron |
| TTCGGGAAAAGACCTTTGAT+TGG | 0.426740 | 5_2:-34868068 | Msa0768530:CDS |
| TTCCTTTGTGGATTTGGGAA+TGG | 0.434124 | 5_2:-34867774 | Msa0768530:CDS |
| CTCAGAAATTGAACTAATCA+AGG | 0.443307 | 5_2:+34869967 | None:intergenic |
| TTTATGTTTATTGTGGCTGT+TGG | 0.443744 | 5_2:-34867381 | Msa0768530:CDS |
| GCCAGGGACTCTTTGAAAGA+AGG | 0.444967 | 5_2:-34868399 | Msa0768530:intron |
| GAGAGCAAGGGAGGTGCCAT+AGG | 0.456449 | 5_2:-34869908 | Msa0768530:CDS |
| TGCTGCCGCTGATGCTGTCC+AGG | 0.459250 | 5_2:-34867718 | Msa0768530:intron |
| TGTGGCTGTTGGTGTGCTCA+TGG | 0.472927 | 5_2:-34867370 | Msa0768530:CDS |
| GATTCCAGCGAAGAAAACTA+TGG | 0.475490 | 5_2:+34868040 | None:intergenic |
| CTTCTGATTTATGGATTCAA+AGG | 0.477990 | 5_2:-34870436 | None:intergenic |
| GGAGAATATAGGAAATCATC+AGG | 0.478060 | 5_2:-34867435 | Msa0768530:CDS |
| AATGTATTTGGTGGAGAGCA+AGG | 0.480973 | 5_2:-34869921 | Msa0768530:CDS |
| GTGGTGTGGTCCTTAGCCTT+GGG | 0.483800 | 5_2:-34869397 | Msa0768530:CDS |
| TCAGTAATGTTTGCAATGGC+AGG | 0.486775 | 5_2:-34869419 | Msa0768530:CDS |
| AGTATGCATTTGCTCTAGTT+GGG | 0.489967 | 5_2:-34869361 | Msa0768530:CDS |
| AGTTCAAGACAGGGTGGTAA+AGG | 0.491004 | 5_2:+34867865 | None:intergenic |
| CATTTGGTCAGATAGGAAAT+GGG | 0.496722 | 5_2:-34869745 | Msa0768530:CDS |
| GACTTGGGTAAGTTCAAGAC+AGG | 0.501949 | 5_2:+34867855 | None:intergenic |
| TGCCATAGGGTGCATGCTGT+TGG | 0.512313 | 5_2:-34869894 | Msa0768530:CDS |
| AGCCAACAGCATGCACCCTA+TGG | 0.513094 | 5_2:+34869892 | None:intergenic |
| TATGTTGTTTATGTTTATTG+TGG | 0.518587 | 5_2:-34867388 | Msa0768530:CDS |
| TCCTATCTGACCAAATGTAA+AGG | 0.520820 | 5_2:+34869751 | None:intergenic |
| AATTATTTGGGAGACTGGAA+TGG | 0.521853 | 5_2:-34867822 | Msa0768530:CDS |
| TTTGTTGCTAAGTTGAATGC+TGG | 0.524858 | 5_2:+34867999 | None:intergenic |
| GAGACTGGAATGGAAGAGGC+TGG | 0.524923 | 5_2:-34867812 | Msa0768530:CDS |
| ATAATTTGTCAATGATGACT+TGG | 0.527562 | 5_2:+34867839 | None:intergenic |
| CTGTATTGACTCTGTTAGAA+AGG | 0.527795 | 5_2:-34869844 | Msa0768530:CDS |
| TTGGGAGACTGGAATGGAAG+AGG | 0.530432 | 5_2:-34867816 | Msa0768530:CDS |
| TTAAATAATAGTTAAATCAA+AGG | 0.538296 | 5_2:-34868288 | Msa0768530:intron |
| AACTCCTGGGAAAAGAATCT+CGG | 0.540525 | 5_2:+34869095 | None:intergenic |
| GGAAGAACATATATCTTACT+GGG | 0.545902 | 5_2:-34867414 | Msa0768530:CDS |
| TTTATGGGAGGTCAAGCTGC+TGG | 0.548399 | 5_2:-34867744 | Msa0768530:CDS |
| ATTTGCTCTAGTTGGGCTGT+CGG | 0.550748 | 5_2:-34869354 | Msa0768530:CDS |
| TAATTTGTCAATGATGACTT+GGG | 0.560239 | 5_2:+34867840 | None:intergenic |
| GCCCTCAGTAATGTTTGCAA+TGG | 0.568356 | 5_2:-34869423 | Msa0768530:CDS |
| ACAAAGGAAACCAGCCAACA+AGG | 0.568825 | 5_2:+34867788 | None:intergenic |
| ACTATGGTTAATCCAATCAA+AGG | 0.569183 | 5_2:+34868056 | None:intergenic |
| ATGTATTTGGTGGAGAGCAA+GGG | 0.570462 | 5_2:-34869920 | Msa0768530:CDS |
| TGGACAGATTCCCAAGGCTA+AGG | 0.573485 | 5_2:+34869387 | None:intergenic |
| GTTTGCAATGGCAGGTGGTG+TGG | 0.575901 | 5_2:-34869411 | Msa0768530:CDS |
| AAATCAAAGGATCTTGAAAG+TGG | 0.575914 | 5_2:-34868275 | Msa0768530:CDS |
| TCTAACAGAGTCAATACAGC+AGG | 0.576923 | 5_2:+34869848 | None:intergenic |
| AGACTGGAATGGAAGAGGCT+GGG | 0.582182 | 5_2:-34867811 | Msa0768530:CDS |
| GGTAAGTATGCTGAGGAAGA+CGG | 0.584747 | 5_2:+34869816 | None:intergenic |
| AATTGGTGATTGAGTAATCG+AGG | 0.594955 | 5_2:+34869795 | None:intergenic |
| TCATGGCATCATCAGGGCAC+AGG | 0.595088 | 5_2:-34867353 | Msa0768530:CDS |
| TATGCTTGCTGTAATCACTT+CGG | 0.598723 | 5_2:+34869328 | None:intergenic |
| TGAGTTGAAAATGTATTTGG+TGG | 0.599251 | 5_2:-34869930 | Msa0768530:CDS |
| TCTTTGAAAGAAGGAAACAT+AGG | 0.600384 | 5_2:-34868390 | Msa0768530:intron |
| GTGTGCTCATGGCATCATCA+GGG | 0.603350 | 5_2:-34867359 | Msa0768530:CDS |
| AGAGCAAGGGAGGTGCCATA+GGG | 0.611608 | 5_2:-34869907 | Msa0768530:CDS |
| CTTGACCTCCCATAAACTGA+AGG | 0.611748 | 5_2:+34867751 | None:intergenic |
| CGATAATCAAGCTAAGCTCA+AGG | 0.612303 | 5_2:-34869016 | Msa0768530:CDS |
| GCCATTGCAAACATTACTGA+GGG | 0.615245 | 5_2:+34869422 | None:intergenic |
| TGCCATTGCAAACATTACTG+AGG | 0.624016 | 5_2:+34869421 | None:intergenic |
| TCAAAGGATCTTGAAAGTGG+AGG | 0.634334 | 5_2:-34868272 | Msa0768530:CDS |
| GCGGTGTAAACATTCAAATG+AGG | 0.637587 | 5_2:+34867945 | None:intergenic |
| ACTCACCTGGACAGCATCAG+CGG | 0.649515 | 5_2:+34867713 | None:intergenic |
| AATGGCCTTCAGTTTATGGG+AGG | 0.649540 | 5_2:-34867756 | Msa0768530:CDS |
| TATTTGGTGGAGAGCAAGGG+AGG | 0.652359 | 5_2:-34869917 | Msa0768530:CDS |
| TGATTAGTTCAATTTCTGAG+AGG | 0.660284 | 5_2:-34869964 | Msa0768530:CDS |
| TAATCGAGGTAAGTATGCTG+AGG | 0.662144 | 5_2:+34869809 | None:intergenic |
| GGCCATTCCCAAATCCACAA+AGG | 0.662272 | 5_2:+34867772 | None:intergenic |
| TTGACTCTGTTAGAAAGGCG+AGG | 0.664406 | 5_2:-34869839 | Msa0768530:CDS |
| AGAAATTGAACTAATCAAGG+AGG | 0.679840 | 5_2:+34869970 | None:intergenic |
| GTAATGTTTGCAATGGCAGG+TGG | 0.686758 | 5_2:-34869416 | Msa0768530:CDS |
| TAGAGCAAATGCATACTGTG+TGG | 0.706616 | 5_2:+34869367 | None:intergenic |
| GAAGAACATATATCTTACTG+GGG | 0.713784 | 5_2:-34867413 | Msa0768530:CDS |
| ACTTAGCAACAAATGACCAG+TGG | 0.727226 | 5_2:-34867989 | Msa0768530:CDS |
| ACTGTGTGGACAGATTCCCA+AGG | 0.729854 | 5_2:+34869381 | None:intergenic |
| ACTTGGGTAAGTTCAAGACA+GGG | 0.732443 | 5_2:+34867856 | None:intergenic |
| TGGGTAAGTTCAAGACAGGG+TGG | 0.743598 | 5_2:+34867859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTGATTTTGAAATAT+TGG | - | chr5_2:34867999-34868018 | Msa0768530:CDS | 10.0% |
| !!! | TAAATTGATTTTGAAATATT+GGG | - | chr5_2:34868000-34868019 | Msa0768530:CDS | 10.0% |
| !! | TTAAATAATAGTTAAATCAA+AGG | - | chr5_2:34869303-34869322 | Msa0768530:intron | 10.0% |
| !!! | TTAATCATTTAGAATTCAAA+TGG | + | chr5_2:34867263-34867282 | None:intergenic | 15.0% |
| !!! | ATCTTTTGTATTTATCAATT+TGG | - | chr5_2:34867303-34867322 | Msa0768530:three_prime_UTR | 15.0% |
| !! | ATAGCTTATATAAATTAAGT+TGG | - | chr5_2:34867525-34867544 | Msa0768530:intron | 15.0% |
| !!! | AAATTGATTTTGAAATATTG+GGG | - | chr5_2:34868001-34868020 | Msa0768530:CDS | 15.0% |
| !!! | TTTTCTTTCTCTTTTTTAAA+AGG | + | chr5_2:34868743-34868762 | None:intergenic | 15.0% |
| !! | AATTGAAACTATAAATTACA+AGG | + | chr5_2:34869099-34869118 | None:intergenic | 15.0% |
| !! | CTATTATTTAAACATTGAAA+AGG | + | chr5_2:34869294-34869313 | None:intergenic | 15.0% |
| !! | TTAGATATATTGAGAAAATT+AGG | + | chr5_2:34870027-34870046 | None:intergenic | 15.0% |
| !!! | ATTGATTAAGCTTTTATATA+TGG | - | chr5_2:34870265-34870284 | Msa0768530:intron | 15.0% |
| !!! | GTTTGACTTTCTAAAATTTA+AGG | - | chr5_2:34867210-34867229 | Msa0768530:three_prime_UTR | 20.0% |
| !!! | TTTAGAATTCAAATGGAAAA+AGG | + | chr5_2:34867256-34867275 | None:intergenic | 20.0% |
| !! | ATTATAATTGCCTTTACATT+TGG | - | chr5_2:34867830-34867849 | Msa0768530:CDS | 20.0% |
| !!! | TTCTCTTTTTTAAAAGGAAA+AGG | + | chr5_2:34868737-34868756 | None:intergenic | 20.0% |
| !! | GTGTAAATAATTCTTTCAAA+AGG | - | chr5_2:34868835-34868854 | Msa0768530:intron | 20.0% |
| !!! | CTTCTTTTGTTATATAAATC+TGG | - | chr5_2:34869134-34869153 | Msa0768530:CDS | 20.0% |
| !!! | TTTTGTTATATAAATCTGGT+AGG | - | chr5_2:34869138-34869157 | Msa0768530:CDS | 20.0% |
| !!! | TTTGTTATATAAATCTGGTA+GGG | - | chr5_2:34869139-34869158 | Msa0768530:CDS | 20.0% |
| !! | TATTTAAACATTGAAAAGGT+AGG | + | chr5_2:34869290-34869309 | None:intergenic | 20.0% |
| !! | TCATCATTGACAAATTATTT+GGG | - | chr5_2:34869757-34869776 | Msa0768530:CDS | 20.0% |
| !!! | TATGTTGTTTATGTTTATTG+TGG | - | chr5_2:34870203-34870222 | Msa0768530:intron | 20.0% |
| !! | CACAAATGTATATAGTAATA+AGG | - | chr5_2:34870316-34870335 | Msa0768530:intron | 20.0% |
| !!! | CCTTATAAGCTATTTTCATA+AGG | + | chr5_2:34867469-34867488 | None:intergenic | 25.0% |
| ! | CCTTATGAAAATAGCTTATA+AGG | - | chr5_2:34867466-34867485 | Msa0768530:CDS | 25.0% |
| !!! | ATTAAGTTGGTTATCCAAAT+AGG | - | chr5_2:34867538-34867557 | Msa0768530:intron | 25.0% |
| ! | ACCTAATAGCTTATCATTTA+AGG | - | chr5_2:34867561-34867580 | Msa0768530:intron | 25.0% |
| ! | TCCTTAAATGATAAGCTATT+AGG | + | chr5_2:34867565-34867584 | None:intergenic | 25.0% |
| !!! | GACTAATTCATTTTGTTTTC+AGG | - | chr5_2:34867583-34867602 | Msa0768530:intron | 25.0% |
| ! | ATCAGTGTTAATATCATTTC+AGG | + | chr5_2:34867962-34867981 | None:intergenic | 25.0% |
| !!! | TAATTTTCCATCGATTATGT+CGG | + | chr5_2:34868310-34868329 | None:intergenic | 25.0% |
| !!! | CACAACCTTAAATTACTTTT+TGG | - | chr5_2:34868455-34868474 | Msa0768530:intron | 25.0% |
| ! | GTCATCCAAAAAGTAATTTA+AGG | + | chr5_2:34868463-34868482 | None:intergenic | 25.0% |
| ! | GTTAATGAGTTATGATTCAT+TGG | + | chr5_2:34868970-34868989 | None:intergenic | 25.0% |
| ! | AGATACTGAAAAATAGAAGA+AGG | + | chr5_2:34869671-34869690 | None:intergenic | 25.0% |
| !!! | TCAGTATCTTGTTTTGTTAT+CGG | - | chr5_2:34869682-34869701 | Msa0768530:intron | 25.0% |
| !! | TAATTTGTCAATGATGACTT+GGG | + | chr5_2:34869754-34869773 | None:intergenic | 25.0% |
| !! | ATAATTTGTCAATGATGACT+TGG | + | chr5_2:34869755-34869774 | None:intergenic | 25.0% |
| ! | GTCATCATTGACAAATTATT+TGG | - | chr5_2:34869756-34869775 | Msa0768530:CDS | 25.0% |
| ! | GAAAATTGTGATTACAAAGT+TGG | + | chr5_2:34869978-34869997 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTTGGAGAATAT+AGG | - | chr5_2:34870145-34870164 | Msa0768530:intron | 25.0% |
| TACTGATATAAGCACTTTCA+AGG | - | chr5_2:34867354-34867373 | Msa0768530:CDS | 30.0% | |
| !! | GCTATTTTCATAAGGTATCT+TGG | + | chr5_2:34867461-34867480 | None:intergenic | 30.0% |
| ATAAGCTATTAGGTCCTATT+TGG | + | chr5_2:34867555-34867574 | None:intergenic | 30.0% | |
| AGAAATTGAACTAATCAAGG+AGG | + | chr5_2:34867624-34867643 | None:intergenic | 30.0% | |
| CTCAGAAATTGAACTAATCA+AGG | + | chr5_2:34867627-34867646 | None:intergenic | 30.0% | |
| ! | TGATTAGTTCAATTTCTGAG+AGG | - | chr5_2:34867627-34867646 | Msa0768530:intron | 30.0% |
| ! | TGCTGAGTTGAAAATGTATT+TGG | - | chr5_2:34867658-34867677 | Msa0768530:intron | 30.0% |
| ! | TGAGTTGAAAATGTATTTGG+TGG | - | chr5_2:34867661-34867680 | Msa0768530:intron | 30.0% |
| TTACTCAATCACCAATTTCT+TGG | - | chr5_2:34867802-34867821 | Msa0768530:CDS | 30.0% | |
| TATAATAGCAGCCAAGAAAT+TGG | + | chr5_2:34867816-34867835 | None:intergenic | 30.0% | |
| ! | GCAAGTTGAGTTAAGAAATT+TGG | + | chr5_2:34867884-34867903 | None:intergenic | 30.0% |
| !! | TTCACTTGTTTTCATCGTAA+TGG | - | chr5_2:34867929-34867948 | Msa0768530:CDS | 30.0% |
| TGAAGCAATTAGTAATACCT+AGG | - | chr5_2:34868029-34868048 | Msa0768530:CDS | 30.0% | |
| GAAGCAATTAGTAATACCTA+GGG | - | chr5_2:34868030-34868049 | Msa0768530:CDS | 30.0% | |
| ! | CTTCATAAATTGTTACTTGC+AGG | - | chr5_2:34868138-34868157 | Msa0768530:intron | 30.0% |
| ! | ATTGTTACTTGCAGGATAAT+TGG | - | chr5_2:34868146-34868165 | Msa0768530:intron | 30.0% |
| AATACAGCAGAATTCAATAC+TGG | + | chr5_2:34868412-34868431 | None:intergenic | 30.0% | |
| AACTTTGTTCAATTTGTCAC+AGG | - | chr5_2:34868432-34868451 | Msa0768530:intron | 30.0% | |
| !! | CAAGTTGATAATCATACGAA+GGG | + | chr5_2:34868680-34868699 | None:intergenic | 30.0% |
| CACTGTTTAGAAACAGAAAT+AGG | - | chr5_2:34868777-34868796 | Msa0768530:intron | 30.0% | |
| ACTTATAAAAGTGATTGAGC+TGG | + | chr5_2:34868896-34868915 | None:intergenic | 30.0% | |
| ! | TAAAAGAGTTCCCTCTATTT+TGG | + | chr5_2:34868926-34868945 | None:intergenic | 30.0% |
| !!! | ATCAAAAACTTTGTTTTGCC+AGG | - | chr5_2:34869175-34869194 | Msa0768530:intron | 30.0% |
| !!! | TCAAAAACTTTGTTTTGCCA+GGG | - | chr5_2:34869176-34869195 | Msa0768530:intron | 30.0% |
| ! | TCTTTGAAAGAAGGAAACAT+AGG | - | chr5_2:34869201-34869220 | Msa0768530:intron | 30.0% |
| AACTTAAAGGATTGCTTCAT+TGG | - | chr5_2:34869245-34869264 | Msa0768530:intron | 30.0% | |
| AAATCAAAGGATCTTGAAAG+TGG | - | chr5_2:34869316-34869335 | Msa0768530:CDS | 30.0% | |
| ATTCTCTATGAGAAAAACTG+CGG | + | chr5_2:34869374-34869393 | None:intergenic | 30.0% | |
| TGAAAACAGAAGAGCTATTA+AGG | - | chr5_2:34869393-34869412 | Msa0768530:CDS | 30.0% | |
| ACTATGGTTAATCCAATCAA+AGG | + | chr5_2:34869538-34869557 | None:intergenic | 30.0% | |
| AGTGGCACAGTTTAAAAAAA+GGG | - | chr5_2:34869620-34869639 | Msa0768530:intron | 30.0% | |
| TACTGAAAAATAGAAGAAGG+CGG | + | chr5_2:34869668-34869687 | None:intergenic | 30.0% | |
| GACGAGTTCTCATTAAATAT+CGG | + | chr5_2:34869942-34869961 | None:intergenic | 30.0% | |
| ! | GATTACAAAGTTGGCTTATA+TGG | + | chr5_2:34869969-34869988 | None:intergenic | 30.0% |
| ! | TTTGAATGTGTTGATGAAAC+AGG | - | chr5_2:34870092-34870111 | Msa0768530:intron | 30.0% |
| !! | TTTTGGGGAATTGTTTTGTT+TGG | - | chr5_2:34870135-34870154 | Msa0768530:intron | 30.0% |
| AGGAAGAACATATATCTTAC+TGG | - | chr5_2:34870176-34870195 | Msa0768530:intron | 30.0% | |
| GGAAGAACATATATCTTACT+GGG | - | chr5_2:34870177-34870196 | Msa0768530:intron | 30.0% | |
| GAAGAACATATATCTTACTG+GGG | - | chr5_2:34870178-34870197 | Msa0768530:intron | 30.0% | |
| TTTATGTTTATTGTGGCTGT+TGG | - | chr5_2:34870210-34870229 | Msa0768530:intron | 30.0% | |
| TGTGAGTTCAAACTAATCAT+TGG | + | chr5_2:34870300-34870319 | None:intergenic | 30.0% | |
| TAAGCACTTTCAAGGTTGTT+TGG | - | chr5_2:34867362-34867381 | Msa0768530:CDS | 35.0% | |
| AAGCACTTTCAAGGTTGTTT+GGG | - | chr5_2:34867363-34867382 | Msa0768530:CDS | 35.0% | |
| !!! | TGTTGGCTCTTTTCTTCTTA+GGG | - | chr5_2:34867714-34867733 | Msa0768530:intron | 35.0% |
| !! | CTGTATTGACTCTGTTAGAA+AGG | - | chr5_2:34867747-34867766 | Msa0768530:CDS | 35.0% |
| ! | AATTGGTGATTGAGTAATCG+AGG | + | chr5_2:34867799-34867818 | None:intergenic | 35.0% |
| TCCTATCTGACCAAATGTAA+AGG | + | chr5_2:34867843-34867862 | None:intergenic | 35.0% | |
| ACATTTGGTCAGATAGGAAA+TGG | - | chr5_2:34867845-34867864 | Msa0768530:CDS | 35.0% | |
| CATTTGGTCAGATAGGAAAT+GGG | - | chr5_2:34867846-34867865 | Msa0768530:CDS | 35.0% | |
| ! | TTTCTTAACTCAACTTGCTC+AGG | - | chr5_2:34867886-34867905 | Msa0768530:CDS | 35.0% |
| CAATTAGTAATACCTAGGGA+AGG | - | chr5_2:34868034-34868053 | Msa0768530:CDS | 35.0% | |
| AAAATACTCAAACCTTCCCT+AGG | + | chr5_2:34868049-34868068 | None:intergenic | 35.0% | |
| AGTATGCATTTGCTCTAGTT+GGG | - | chr5_2:34868230-34868249 | Msa0768530:CDS | 35.0% | |
| !! | TATGCTTGCTGTAATCACTT+CGG | + | chr5_2:34868266-34868285 | None:intergenic | 35.0% |
| GCAAGCATAACTGTTGTTAT+AGG | - | chr5_2:34868277-34868296 | Msa0768530:CDS | 35.0% | |
| CAATACTGGATCAAGTTCAA+GGG | + | chr5_2:34868398-34868417 | None:intergenic | 35.0% | |
| TCAATACTGGATCAAGTTCA+AGG | + | chr5_2:34868399-34868418 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTGTTTTTTGGTTG+CGG | - | chr5_2:34868515-34868534 | Msa0768530:intron | 35.0% |
| ! | CTTGAGCTTAGCTTGATTAT+CGG | + | chr5_2:34868577-34868596 | None:intergenic | 35.0% |
| GTAAGCACACAATACATACA+AGG | + | chr5_2:34868628-34868647 | None:intergenic | 35.0% | |
| !! | GCAAGTTGATAATCATACGA+AGG | + | chr5_2:34868681-34868700 | None:intergenic | 35.0% |
| ! | AGAAATAGGAATTGCCACTT+TGG | - | chr5_2:34868791-34868810 | Msa0768530:intron | 35.0% |
| !! | GAAATAGGAATTGCCACTTT+GGG | - | chr5_2:34868792-34868811 | Msa0768530:intron | 35.0% |
| AAGTAGTACCTCCAAAATAG+AGG | - | chr5_2:34868912-34868931 | Msa0768530:intron | 35.0% | |
| AGTAGTACCTCCAAAATAGA+GGG | - | chr5_2:34868913-34868932 | Msa0768530:intron | 35.0% | |
| GATTCATTGGAGAAGAGAAA+AGG | + | chr5_2:34868957-34868976 | None:intergenic | 35.0% | |
| GATTGTTACTGCTGATAAAG+AGG | - | chr5_2:34868994-34869013 | Msa0768530:CDS | 35.0% | |
| !! | TTTAAGTTGAACCTTGTTGG+AGG | + | chr5_2:34869233-34869252 | None:intergenic | 35.0% |
| TCCAACAAGGTTCAACTTAA+AGG | - | chr5_2:34869232-34869251 | Msa0768530:intron | 35.0% | |
| !! | TCCTTTAAGTTGAACCTTGT+TGG | + | chr5_2:34869236-34869255 | None:intergenic | 35.0% |
| TCTGCAGAAAAATTGAAAGC+AGG | - | chr5_2:34869346-34869365 | Msa0768530:CDS | 35.0% | |
| ! | TTAACCATAGTTTTCTTCGC+TGG | - | chr5_2:34869547-34869566 | Msa0768530:intron | 35.0% |
| ! | TTTGTTGCTAAGTTGAATGC+TGG | + | chr5_2:34869595-34869614 | None:intergenic | 35.0% |
| !!! | CTTTTTTTAAACTGTGCCAC+TGG | + | chr5_2:34869621-34869640 | None:intergenic | 35.0% |
| CAGTGGCACAGTTTAAAAAA+AGG | - | chr5_2:34869619-34869638 | Msa0768530:intron | 35.0% | |
| GTGGCACAGTTTAAAAAAAG+GGG | - | chr5_2:34869621-34869640 | Msa0768530:intron | 35.0% | |
| TGACAAATTATTTGGGAGAC+TGG | - | chr5_2:34869764-34869783 | Msa0768530:CDS | 35.0% | |
| AATTATTTGGGAGACTGGAA+TGG | - | chr5_2:34869769-34869788 | Msa0768530:CDS | 35.0% | |
| TAGTGTCAAACGAAGTCAAA+CGG | - | chr5_2:34869999-34870018 | Msa0768530:intron | 35.0% | |
| GGAGAATATAGGAAATCATC+AGG | - | chr5_2:34870156-34870175 | Msa0768530:intron | 35.0% | |
| AGCACTTTCAAGGTTGTTTG+GGG | - | chr5_2:34867364-34867383 | Msa0768530:CDS | 40.0% | |
| ! | AAGGTATCTTGGAGAGCTTA+TGG | + | chr5_2:34867450-34867469 | None:intergenic | 40.0% |
| ! | AATGTATTTGGTGGAGAGCA+AGG | - | chr5_2:34867670-34867689 | Msa0768530:intron | 40.0% |
| ! | ATGTATTTGGTGGAGAGCAA+GGG | - | chr5_2:34867671-34867690 | Msa0768530:intron | 40.0% |
| !!! | CTGTTGGCTCTTTTCTTCTT+AGG | - | chr5_2:34867713-34867732 | Msa0768530:intron | 40.0% |
| ! | CTCTTTTCTTCTTAGGGACA+TGG | - | chr5_2:34867720-34867739 | Msa0768530:CDS | 40.0% |
| TCTAACAGAGTCAATACAGC+AGG | + | chr5_2:34867746-34867765 | None:intergenic | 40.0% | |
| TAATCGAGGTAAGTATGCTG+AGG | + | chr5_2:34867785-34867804 | None:intergenic | 40.0% | |
| GCCTTTACATTTGGTCAGAT+AGG | - | chr5_2:34867839-34867858 | Msa0768530:CDS | 40.0% | |
| ! | TAACTCAACTTGCTCAGGTT+CGG | - | chr5_2:34867891-34867910 | Msa0768530:CDS | 40.0% |
| GCCATTGCAAACATTACTGA+GGG | + | chr5_2:34868172-34868191 | None:intergenic | 40.0% | |
| TGCCATTGCAAACATTACTG+AGG | + | chr5_2:34868173-34868192 | None:intergenic | 40.0% | |
| TCAGTAATGTTTGCAATGGC+AGG | - | chr5_2:34868172-34868191 | Msa0768530:intron | 40.0% | |
| TAGAGCAAATGCATACTGTG+TGG | + | chr5_2:34868227-34868246 | None:intergenic | 40.0% | |
| CAGTATGCATTTGCTCTAGT+TGG | - | chr5_2:34868229-34868248 | Msa0768530:CDS | 40.0% | |
| TATCTCACCGACATAATCGA+TGG | - | chr5_2:34868300-34868319 | Msa0768530:intron | 40.0% | |
| AACTCCTGGGAAAAGAATCT+CGG | + | chr5_2:34868499-34868518 | None:intergenic | 40.0% | |
| CCAAAAAACAACCAACTCCT+GGG | + | chr5_2:34868512-34868531 | None:intergenic | 40.0% | |
| ACCAAAAAACAACCAACTCC+TGG | + | chr5_2:34868513-34868532 | None:intergenic | 40.0% | |
| !!! | TTTTTGGTTGCGGTTTGTCT+AGG | - | chr5_2:34868525-34868544 | Msa0768530:intron | 40.0% |
| CGATAATCAAGCTAAGCTCA+AGG | - | chr5_2:34868575-34868594 | Msa0768530:intron | 40.0% | |
| TGATAATCATACGAAGGGAC+CGG | + | chr5_2:34868675-34868694 | None:intergenic | 40.0% | |
| AGCTATGATAGTTCCCAAAG+TGG | + | chr5_2:34868808-34868827 | None:intergenic | 40.0% | |
| !! | AAGAGTTCCCTCTATTTTGG+AGG | + | chr5_2:34868923-34868942 | None:intergenic | 40.0% |
| TGGAGAAGAGAAAAGGAGTT+TGG | + | chr5_2:34868950-34868969 | None:intergenic | 40.0% | |
| TGAATTTCAGTTGCTGAGTG+CGG | - | chr5_2:34869042-34869061 | Msa0768530:CDS | 40.0% | |
| GAGTGCGGAATTTGTGTTTA+TGG | - | chr5_2:34869057-34869076 | Msa0768530:CDS | 40.0% | |
| ATAGGTAAGAACCTCCAACA+AGG | - | chr5_2:34869219-34869238 | Msa0768530:intron | 40.0% | |
| TCAAAGGATCTTGAAAGTGG+AGG | - | chr5_2:34869319-34869338 | Msa0768530:CDS | 40.0% | |
| TTCGGGAAAAGACCTTTGAT+TGG | - | chr5_2:34869523-34869542 | Msa0768530:intron | 40.0% | |
| GATTCCAGCGAAGAAAACTA+TGG | + | chr5_2:34869554-34869573 | None:intergenic | 40.0% | |
| ACTTAGCAACAAATGACCAG+TGG | - | chr5_2:34869602-34869621 | Msa0768530:intron | 40.0% | |
| GCGGTGTAAACATTCAAATG+AGG | + | chr5_2:34869649-34869668 | None:intergenic | 40.0% | |
| ACTTGGGTAAGTTCAAGACA+GGG | + | chr5_2:34869738-34869757 | None:intergenic | 40.0% | |
| CTGGTTTCCTTTGTGGATTT+GGG | - | chr5_2:34869812-34869831 | Msa0768530:CDS | 40.0% | |
| TTCCTTTGTGGATTTGGGAA+TGG | - | chr5_2:34869817-34869836 | Msa0768530:CDS | 40.0% | |
| GCAATCTTGTTAAACTCACC+TGG | + | chr5_2:34869894-34869913 | None:intergenic | 40.0% | |
| ! | TTCCACTTGTGAGCACTTTT+TGG | - | chr5_2:34870118-34870137 | Msa0768530:intron | 40.0% |
| !! | TCCACTTGTGAGCACTTTTT+GGG | - | chr5_2:34870119-34870138 | Msa0768530:intron | 40.0% |
| TTGACTCTGTTAGAAAGGCG+AGG | - | chr5_2:34867752-34867771 | Msa0768530:CDS | 45.0% | |
| GGTAAGTATGCTGAGGAAGA+CGG | + | chr5_2:34867778-34867797 | None:intergenic | 45.0% | |
| GCCCTCAGTAATGTTTGCAA+TGG | - | chr5_2:34868168-34868187 | Msa0768530:intron | 45.0% | |
| GTAATGTTTGCAATGGCAGG+TGG | - | chr5_2:34868175-34868194 | Msa0768530:intron | 45.0% | |
| ATTTGCTCTAGTTGGGCTGT+CGG | - | chr5_2:34868237-34868256 | Msa0768530:CDS | 45.0% | |
| ! | AAAGCCGAGATTCTTTTCCC+AGG | - | chr5_2:34868492-34868511 | Msa0768530:intron | 45.0% |
| ! | GAGATTCTTTTCCCAGGAGT+TGG | - | chr5_2:34868498-34868517 | Msa0768530:intron | 45.0% |
| !!! | CCCAGGAGTTGGTTGTTTTT+TGG | - | chr5_2:34868509-34868528 | Msa0768530:intron | 45.0% |
| GTCTATTTAACTCCCCTTGC+CGG | - | chr5_2:34868653-34868672 | Msa0768530:intron | 45.0% | |
| TCCTTCTTTCAAAGAGTCCC+TGG | + | chr5_2:34869196-34869215 | None:intergenic | 45.0% | |
| TACTCTTAAAGTTCCGCTGC+AGG | - | chr5_2:34869498-34869517 | Msa0768530:intron | 45.0% | |
| ! | AAAGTTCCGCTGCAGGTTTT+CGG | - | chr5_2:34869505-34869524 | Msa0768530:intron | 45.0% |
| AGTTCAAGACAGGGTGGTAA+AGG | + | chr5_2:34869729-34869748 | None:intergenic | 45.0% | |
| GACTTGGGTAAGTTCAAGAC+AGG | + | chr5_2:34869739-34869758 | None:intergenic | 45.0% | |
| ACAAAGGAAACCAGCCAACA+AGG | + | chr5_2:34869806-34869825 | None:intergenic | 45.0% | |
| !! | TTGTTGGCTGGTTTCCTTTG+TGG | - | chr5_2:34869805-34869824 | Msa0768530:CDS | 45.0% |
| ! | GCTGGTTTCCTTTGTGGATT+TGG | - | chr5_2:34869811-34869830 | Msa0768530:CDS | 45.0% |
| TGGGAATGGCCTTCAGTTTA+TGG | - | chr5_2:34869831-34869850 | Msa0768530:CDS | 45.0% | |
| GGGAATGGCCTTCAGTTTAT+GGG | - | chr5_2:34869832-34869851 | Msa0768530:CDS | 45.0% | |
| AATGGCCTTCAGTTTATGGG+AGG | - | chr5_2:34869835-34869854 | Msa0768530:CDS | 45.0% | |
| CTTGACCTCCCATAAACTGA+AGG | + | chr5_2:34869843-34869862 | None:intergenic | 45.0% | |
| !! | CCACTTGTGAGCACTTTTTG+GGG | - | chr5_2:34870120-34870139 | Msa0768530:intron | 45.0% |
| ! | TATTTGGTGGAGAGCAAGGG+AGG | - | chr5_2:34867674-34867693 | Msa0768530:intron | 50.0% |
| TGGACAGATTCCCAAGGCTA+AGG | + | chr5_2:34868207-34868226 | None:intergenic | 50.0% | |
| ACTGTGTGGACAGATTCCCA+AGG | + | chr5_2:34868213-34868232 | None:intergenic | 50.0% | |
| ! | GCCAGGGACTCTTTGAAAGA+AGG | - | chr5_2:34869192-34869211 | Msa0768530:intron | 50.0% |
| ! | AAGTTCCGCTGCAGGTTTTC+GGG | - | chr5_2:34869506-34869525 | Msa0768530:intron | 50.0% |
| ! | CTTTTCCCGAAAACCTGCAG+CGG | + | chr5_2:34869514-34869533 | None:intergenic | 50.0% |
| TGGGTAAGTTCAAGACAGGG+TGG | + | chr5_2:34869735-34869754 | None:intergenic | 50.0% | |
| TTGGGAGACTGGAATGGAAG+AGG | - | chr5_2:34869775-34869794 | Msa0768530:CDS | 50.0% | |
| AGACTGGAATGGAAGAGGCT+GGG | - | chr5_2:34869780-34869799 | Msa0768530:CDS | 50.0% | |
| GGCCATTCCCAAATCCACAA+AGG | + | chr5_2:34869822-34869841 | None:intergenic | 50.0% | |
| TTTATGGGAGGTCAAGCTGC+TGG | - | chr5_2:34869847-34869866 | Msa0768530:CDS | 50.0% | |
| !! | CCCCAAAAAGTGCTCACAAG+TGG | + | chr5_2:34870123-34870142 | None:intergenic | 50.0% |
| GTGTGCTCATGGCATCATCA+GGG | - | chr5_2:34870232-34870251 | Msa0768530:intron | 50.0% | |
| !! | AGAGCAAGGGAGGTGCCATA+GGG | - | chr5_2:34867684-34867703 | Msa0768530:intron | 55.0% |
| TGCCATAGGGTGCATGCTGT+TGG | - | chr5_2:34867697-34867716 | Msa0768530:intron | 55.0% | |
| AGCCAACAGCATGCACCCTA+TGG | + | chr5_2:34867702-34867721 | None:intergenic | 55.0% | |
| GTTTGCAATGGCAGGTGGTG+TGG | - | chr5_2:34868180-34868199 | Msa0768530:intron | 55.0% | |
| ! | GTGGTGTGGTCCTTAGCCTT+GGG | - | chr5_2:34868194-34868213 | Msa0768530:intron | 55.0% |
| TCATACGAAGGGACCGGCAA+GGG | + | chr5_2:34868669-34868688 | None:intergenic | 55.0% | |
| ATCATACGAAGGGACCGGCA+AGG | + | chr5_2:34868670-34868689 | None:intergenic | 55.0% | |
| GAGACTGGAATGGAAGAGGC+TGG | - | chr5_2:34869779-34869798 | Msa0768530:CDS | 55.0% | |
| ACTCACCTGGACAGCATCAG+CGG | + | chr5_2:34869881-34869900 | None:intergenic | 55.0% | |
| TGTGGCTGTTGGTGTGCTCA+TGG | - | chr5_2:34870221-34870240 | Msa0768530:intron | 55.0% | |
| GGTGTGCTCATGGCATCATC+AGG | - | chr5_2:34870231-34870250 | Msa0768530:intron | 55.0% | |
| TCATGGCATCATCAGGGCAC+AGG | - | chr5_2:34870238-34870257 | Msa0768530:intron | 55.0% | |
| !! | GAGAGCAAGGGAGGTGCCAT+AGG | - | chr5_2:34867683-34867702 | Msa0768530:intron | 60.0% |
| GGTGGTGTGGTCCTTAGCCT+TGG | - | chr5_2:34868193-34868212 | Msa0768530:intron | 60.0% | |
| CATACGAAGGGACCGGCAAG+GGG | + | chr5_2:34868668-34868687 | None:intergenic | 60.0% | |
| ! | TGGAAGAGGCTGGGCCTTGT+TGG | - | chr5_2:34869789-34869808 | Msa0768530:CDS | 60.0% |
| !! | AGAGGCTGGGCCTTGTTGGC+TGG | - | chr5_2:34869793-34869812 | Msa0768530:CDS | 65.0% |
| TGCTGCCGCTGATGCTGTCC+AGG | - | chr5_2:34869873-34869892 | Msa0768530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 34867165 | 34870448 | 34867165 | ID=Msa0768530;Name=Msa0768530 |
| chr5_2 | mRNA | 34867165 | 34870448 | 34867165 | ID=Msa0768530-mRNA-1;Parent=Msa0768530;Name=Msa0768530-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.85|0.75|0.87|1|1|8|179|428 |
| chr5_2 | exon | 34867165 | 34867499 | 34867165 | ID=Msa0768530-mRNA-1:exon:11951;Parent=Msa0768530-mRNA-1 |
| chr5_2 | exon | 34867719 | 34868093 | 34867719 | ID=Msa0768530-mRNA-1:exon:11950;Parent=Msa0768530-mRNA-1 |
| chr5_2 | exon | 34868199 | 34868299 | 34868199 | ID=Msa0768530-mRNA-1:exon:11949;Parent=Msa0768530-mRNA-1 |
| chr5_2 | exon | 34868391 | 34868416 | 34868391 | ID=Msa0768530-mRNA-1:exon:11948;Parent=Msa0768530-mRNA-1 |
| chr5_2 | exon | 34868985 | 34869159 | 34868985 | ID=Msa0768530-mRNA-1:exon:11947;Parent=Msa0768530-mRNA-1 |
| chr5_2 | exon | 34869315 | 34869453 | 34869315 | ID=Msa0768530-mRNA-1:exon:11946;Parent=Msa0768530-mRNA-1 |
| chr5_2 | exon | 34869706 | 34870008 | 34869706 | ID=Msa0768530-mRNA-1:exon:11945;Parent=Msa0768530-mRNA-1 |
| chr5_2 | exon | 34870437 | 34870448 | 34870437 | ID=Msa0768530-mRNA-1:exon:11944;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34870437 | 34870448 | 34870437 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34869706 | 34870008 | 34869706 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34869315 | 34869453 | 34869315 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34868985 | 34869159 | 34868985 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34868391 | 34868416 | 34868391 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34868199 | 34868299 | 34868199 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34867719 | 34868093 | 34867719 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | CDS | 34867344 | 34867499 | 34867344 | ID=Msa0768530-mRNA-1:cds;Parent=Msa0768530-mRNA-1 |
| chr5_2 | three_prime_UTR | 34867165 | 34867343 | 34867165 | ID=Msa0768530-mRNA-1:three_prime_utr;Parent=Msa0768530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
