Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743800 | RHN57949.1 | 84.651 | 215 | 23 | 2 | 1 | 209 | 1 | 211 | 2.07e-102 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743800 | A0A396HXA4 | 84.651 | 215 | 23 | 2 | 1 | 209 | 1 | 211 | 9.87e-103 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002380 | Msa0743800 | 0.809258 | 2.068197e-50 | -8.615850e-47 |
| Msa0002540 | Msa0743800 | 0.807444 | 5.038809e-50 | -8.615850e-47 |
| Msa0003700 | Msa0743800 | 0.803069 | 4.155920e-49 | -8.615850e-47 |
| Msa0006290 | Msa0743800 | 0.809808 | 1.575554e-50 | -8.615850e-47 |
| Msa0008090 | Msa0743800 | 0.814689 | 1.355743e-51 | -8.615850e-47 |
| Msa0008410 | Msa0743800 | 0.822992 | 1.759931e-53 | -8.615850e-47 |
| Msa0009760 | Msa0743800 | 0.815549 | 8.733333e-52 | -8.615850e-47 |
| Msa0016670 | Msa0743800 | 0.808274 | 3.356142e-50 | -8.615850e-47 |
| Msa0029630 | Msa0743800 | 0.800372 | 1.486528e-48 | -8.615850e-47 |
| Msa0029710 | Msa0743800 | 0.800481 | 1.412359e-48 | -8.615850e-47 |
| Msa0032260 | Msa0743800 | 0.803629 | 3.182124e-49 | -8.615850e-47 |
| Msa0032840 | Msa0743800 | -0.801707 | 7.929636e-49 | -8.615850e-47 |
| Msa0044020 | Msa0743800 | 0.828902 | 6.944671e-55 | -8.615850e-47 |
| Msa0047980 | Msa0743800 | 0.800622 | 1.321779e-48 | -8.615850e-47 |
| Msa0051170 | Msa0743800 | 0.800966 | 1.124690e-48 | -8.615850e-47 |
| Msa0051270 | Msa0743800 | 0.803884 | 2.817071e-49 | -8.615850e-47 |
| Msa0054930 | Msa0743800 | 0.804083 | 2.560541e-49 | -8.615850e-47 |
| Msa0057710 | Msa0743800 | 0.809293 | 2.032860e-50 | -8.615850e-47 |
| Msa0064350 | Msa0743800 | 0.812255 | 4.648620e-51 | -8.615850e-47 |
| Msa0069330 | Msa0743800 | 0.815280 | 1.002525e-51 | -8.615850e-47 |
| Msa0072370 | Msa0743800 | 0.808348 | 3.237355e-50 | -8.615850e-47 |
| Msa0073670 | Msa0743800 | 0.867139 | 1.704917e-65 | -8.615850e-47 |
| Msa0077200 | Msa0743800 | 0.811992 | 5.305398e-51 | -8.615850e-47 |
| Msa0078650 | Msa0743800 | 0.802544 | 5.334439e-49 | -8.615850e-47 |
| Msa0096670 | Msa0743800 | 0.808524 | 2.969530e-50 | -8.615850e-47 |
| Msa0100300 | Msa0743800 | 0.808982 | 2.369564e-50 | -8.615850e-47 |
| Msa0104550 | Msa0743800 | 0.807580 | 4.714663e-50 | -8.615850e-47 |
| Msa0109050 | Msa0743800 | 0.810261 | 1.258420e-50 | -8.615850e-47 |
| Msa0110970 | Msa0743800 | 0.817539 | 3.129048e-52 | -8.615850e-47 |
| Msa0114540 | Msa0743800 | -0.800418 | 1.454657e-48 | -8.615850e-47 |
| Msa0628890 | Msa0743800 | 0.812167 | 4.857769e-51 | -8.615850e-47 |
| Msa0639120 | Msa0743800 | 0.837959 | 3.820484e-57 | -8.615850e-47 |
| Msa0642720 | Msa0743800 | 0.800047 | 1.730856e-48 | -8.615850e-47 |
| Msa0663900 | Msa0743800 | 0.813005 | 3.185666e-51 | -8.615850e-47 |
| Msa0684500 | Msa0743800 | 0.830175 | 3.404994e-55 | -8.615850e-47 |
| Msa0687630 | Msa0743800 | 0.840692 | 7.460335e-58 | -8.615850e-47 |
| Msa0689500 | Msa0743800 | 0.810450 | 1.145926e-50 | -8.615850e-47 |
| Msa0692840 | Msa0743800 | 0.808365 | 3.210310e-50 | -8.615850e-47 |
| Msa0695130 | Msa0743800 | 0.802341 | 5.873343e-49 | -8.615850e-47 |
| Msa0697690 | Msa0743800 | 0.801550 | 8.539972e-49 | -8.615850e-47 |
| Msa0702340 | Msa0743800 | 0.827495 | 1.516192e-54 | -8.615850e-47 |
| Msa0702590 | Msa0743800 | 0.827341 | 1.650803e-54 | -8.615850e-47 |
| Msa0702660 | Msa0743800 | 0.830211 | 3.336365e-55 | -8.615850e-47 |
| Msa0703230 | Msa0743800 | 0.805247 | 1.463506e-49 | -8.615850e-47 |
| Msa0713820 | Msa0743800 | 0.810681 | 1.021475e-50 | -8.615850e-47 |
| Msa0734960 | Msa0743800 | 0.838149 | 3.414041e-57 | -8.615850e-47 |
| Msa0741900 | Msa0743800 | 0.803631 | 3.178836e-49 | -8.615850e-47 |
| Msa0743800 | Msa0752510 | 0.806673 | 7.338758e-50 | -8.615850e-47 |
| Msa0743800 | Msa0755340 | 0.816412 | 5.604015e-52 | -8.615850e-47 |
| Msa0743800 | Msa0760380 | 0.807198 | 5.682508e-50 | -8.615850e-47 |
| Msa0743800 | Msa0784060 | 0.803246 | 3.821101e-49 | -8.615850e-47 |
| Msa0743800 | Msa0787750 | 0.822012 | 2.974599e-53 | -8.615850e-47 |
| Msa0743800 | Msa0787810 | 0.812239 | 4.685998e-51 | -8.615850e-47 |
| Msa0743800 | Msa0788770 | 0.812827 | 3.485309e-51 | -8.615850e-47 |
| Msa0743800 | Msa0797750 | 0.829871 | 4.038788e-55 | -8.615850e-47 |
| Msa0743800 | Msa0804680 | 0.800989 | 1.112463e-48 | -8.615850e-47 |
| Msa0743800 | Msa0814320 | 0.815881 | 7.365779e-52 | -8.615850e-47 |
| Msa0743800 | Msa0822990 | 0.804693 | 1.911206e-49 | -8.615850e-47 |
| Msa0743800 | Msa0823090 | 0.808833 | 2.549610e-50 | -8.615850e-47 |
| Msa0743800 | Msa0824640 | 0.932067 | 1.484628e-94 | -8.615850e-47 |
| Msa0743800 | Msa0840260 | 0.816734 | 4.746765e-52 | -8.615850e-47 |
| Msa0743800 | Msa0846140 | 0.801495 | 8.763789e-49 | -8.615850e-47 |
| Msa0743800 | Msa0864010 | 0.930394 | 1.746197e-93 | -8.615850e-47 |
| Msa0743800 | Msa0869100 | 0.832319 | 1.011538e-55 | -8.615850e-47 |
| Msa0743800 | Msa0872310 | 0.810069 | 1.384120e-50 | -8.615850e-47 |
| Msa0743800 | Msa0888940 | 0.813338 | 2.691987e-51 | -8.615850e-47 |
| Msa0743800 | Msa0905550 | 0.806759 | 7.037155e-50 | -8.615850e-47 |
| Msa0743800 | Msa0930780 | 0.843763 | 1.147142e-58 | -8.615850e-47 |
| Msa0743800 | Msa0931950 | 0.809514 | 1.822731e-50 | -8.615850e-47 |
| Msa0743800 | Msa0936340 | 0.801382 | 9.244776e-49 | -8.615850e-47 |
| Msa0743800 | Msa0937550 | 0.801388 | 9.219903e-49 | -8.615850e-47 |
| Msa0743800 | Msa0943170 | 0.820444 | 6.836891e-53 | -8.615850e-47 |
| Msa0743800 | Msa0959840 | 0.805583 | 1.244515e-49 | -8.615850e-47 |
| Msa0743800 | Msa0967370 | 0.802895 | 4.516018e-49 | -8.615850e-47 |
| Msa0743800 | Msa0968590 | 0.800775 | 1.230243e-48 | -8.615850e-47 |
| Msa0743800 | Msa0980940 | 0.822891 | 1.858368e-53 | -8.615850e-47 |
| Msa0743800 | Msa1008060 | -0.807770 | 4.296282e-50 | -8.615850e-47 |
| Msa0743800 | Msa1012810 | 0.804961 | 1.679843e-49 | -8.615850e-47 |
| Msa0743800 | Msa1013770 | 0.831769 | 1.383642e-55 | -8.615850e-47 |
| Msa0743800 | Msa1019240 | 0.803995 | 2.671396e-49 | -8.615850e-47 |
| Msa0743800 | Msa1019260 | 0.809279 | 2.046817e-50 | -8.615850e-47 |
| Msa0743800 | Msa1040400 | 0.806275 | 8.903996e-50 | -8.615850e-47 |
| Msa0743800 | Msa1049510 | -0.800219 | 1.596869e-48 | -8.615850e-47 |
| Msa0743800 | Msa1063950 | 0.814860 | 1.242631e-51 | -8.615850e-47 |
| Msa0743800 | Msa1082700 | 0.816368 | 5.732900e-52 | -8.615850e-47 |
| Msa0743800 | Msa1093840 | 0.816357 | 5.767126e-52 | -8.615850e-47 |
| Msa0743800 | Msa1102770 | 0.806554 | 7.775576e-50 | -8.615850e-47 |
| Msa0743800 | Msa1126510 | 0.813658 | 2.289728e-51 | -8.615850e-47 |
| Msa0743800 | Msa1126770 | 0.824649 | 7.199902e-54 | -8.615850e-47 |
| Msa0743800 | Msa1127890 | 0.830910 | 2.250681e-55 | -8.615850e-47 |
| Msa0743800 | Msa1134110 | 0.819712 | 1.005476e-52 | -8.615850e-47 |
| Msa0743800 | Msa1139810 | 0.815144 | 1.074812e-51 | -8.615850e-47 |
| Msa0743800 | Msa1140690 | 0.800093 | 1.694082e-48 | -8.615850e-47 |
| Msa0743800 | Msa1157870 | 0.805927 | 1.053843e-49 | -8.615850e-47 |
| Msa0743800 | Msa1165870 | 0.834038 | 3.775139e-56 | -8.615850e-47 |
| Msa0743800 | Msa1166330 | 0.804036 | 2.619366e-49 | -8.615850e-47 |
| Msa0743800 | Msa1166340 | 0.803141 | 4.016028e-49 | -8.615850e-47 |
| Msa0743800 | Msa1174100 | 0.848418 | 6.206311e-60 | -8.615850e-47 |
| Msa0743800 | Msa1183660 | 0.810062 | 1.389223e-50 | -8.615850e-47 |
| Msa0743800 | Msa1184370 | 0.841630 | 4.230295e-58 | -8.615850e-47 |
| Msa0743800 | Msa1192850 | 0.807633 | 4.594902e-50 | -8.615850e-47 |
| Msa0743800 | Msa1201830 | 0.829086 | 6.267470e-55 | -8.615850e-47 |
| Msa0743800 | Msa1204850 | 0.803026 | 4.243192e-49 | -8.615850e-47 |
| Msa0743800 | Msa1224830 | 0.802777 | 4.776919e-49 | -8.615850e-47 |
| Msa0743800 | Msa1224840 | 0.833290 | 5.806602e-56 | -8.615850e-47 |
| Msa0743800 | Msa1227690 | 0.826935 | 2.064422e-54 | -8.615850e-47 |
| Msa0743800 | Msa1228290 | 0.825499 | 4.534334e-54 | -8.615850e-47 |
| Msa0743800 | Msa1228890 | 0.815623 | 8.406186e-52 | -8.615850e-47 |
| Msa0743800 | Msa1235250 | 0.804004 | 2.659928e-49 | -8.615850e-47 |
| Msa0743800 | Msa1252190 | 0.815879 | 7.372867e-52 | -8.615850e-47 |
| Msa0743800 | Msa1254710 | 0.801829 | 7.484431e-49 | -8.615850e-47 |
| Msa0743800 | Msa1274280 | 0.803110 | 4.075403e-49 | -8.615850e-47 |
| Msa0743800 | Msa1292830 | 0.813170 | 2.930906e-51 | -8.615850e-47 |
| Msa0743800 | Msa1294840 | 0.825143 | 5.504921e-54 | -8.615850e-47 |
| Msa0743800 | Msa1295110 | 0.806408 | 8.346860e-50 | -8.615850e-47 |
| Msa0743800 | Msa1295490 | -0.801534 | 8.605931e-49 | -8.615850e-47 |
| Msa0743800 | Msa1299360 | 0.845372 | 4.231366e-59 | -8.615850e-47 |
| Msa0743800 | Msa1303250 | 0.800588 | 1.343285e-48 | -8.615850e-47 |
| Msa0743800 | Msa1306990 | 0.811795 | 5.854564e-51 | -8.615850e-47 |
| Msa0743800 | Msa1307950 | 0.847472 | 1.131896e-59 | -8.615850e-47 |
| Msa0743800 | Msa1320740 | 0.803805 | 2.925629e-49 | -8.615850e-47 |
| Msa0743800 | Msa1327490 | 0.807382 | 5.195066e-50 | -8.615850e-47 |
| Msa0743800 | Msa1331910 | 0.808958 | 2.397908e-50 | -8.615850e-47 |
| Msa0743800 | Msa1344850 | 0.843885 | 1.064294e-58 | -8.615850e-47 |
| Msa0743800 | Msa1359390 | 0.809677 | 1.681308e-50 | -8.615850e-47 |
| Msa0743800 | Msa1361410 | 0.800884 | 1.168773e-48 | -8.615850e-47 |
| Msa0743800 | Msa1365150 | 0.833611 | 4.827176e-56 | -8.615850e-47 |
| Msa0743800 | Msa1367880 | 0.830357 | 3.073584e-55 | -8.615850e-47 |
| Msa0743800 | Msa1368210 | 0.802123 | 6.513577e-49 | -8.615850e-47 |
| Msa0743800 | Msa1373330 | 0.823366 | 1.439793e-53 | -8.615850e-47 |
| Msa0743800 | Msa1374040 | 0.828641 | 8.029603e-55 | -8.615850e-47 |
| Msa0743800 | Msa1387190 | 0.821336 | 4.262378e-53 | -8.615850e-47 |
| Msa0743800 | Msa1397940 | 0.813494 | 2.487413e-51 | -8.615850e-47 |
| Msa0743800 | Msa1404190 | 0.839393 | 1.627811e-57 | -8.615850e-47 |
| Msa0743800 | Msa1427060 | 0.807362 | 5.245080e-50 | -8.615850e-47 |
| Msa0743800 | Msa1438640 | 0.828535 | 8.516613e-55 | -8.615850e-47 |
| Msa0743800 | Msa1442850 | 0.814269 | 1.678719e-51 | -8.615850e-47 |
| Msa0743800 | Msa1459180 | 0.812484 | 4.141986e-51 | -8.615850e-47 |
| Msa0743800 | Msa1465080 | 0.825921 | 3.601254e-54 | -8.615850e-47 |
| Msa0743800 | Msa1466460 | 0.802261 | 6.101551e-49 | -8.615850e-47 |
| Msa0743800 | Msa1466990 | 0.829660 | 4.545555e-55 | -8.615850e-47 |
| Msa0124340 | Msa0743800 | 0.815326 | 9.789314e-52 | -8.615850e-47 |
| Msa0125450 | Msa0743800 | 0.800536 | 1.376242e-48 | -8.615850e-47 |
| Msa0125540 | Msa0743800 | 0.803881 | 2.821535e-49 | -8.615850e-47 |
| Msa0127310 | Msa0743800 | 0.805716 | 1.167297e-49 | -8.615850e-47 |
| Msa0130240 | Msa0743800 | 0.826592 | 2.493315e-54 | -8.615850e-47 |
| Msa0134610 | Msa0743800 | 0.833590 | 4.888092e-56 | -8.615850e-47 |
| Msa0137610 | Msa0743800 | -0.801192 | 1.010953e-48 | -8.615850e-47 |
| Msa0140300 | Msa0743800 | 0.809914 | 1.494726e-50 | -8.615850e-47 |
| Msa0140960 | Msa0743800 | 0.815430 | 9.284345e-52 | -8.615850e-47 |
| Msa0142950 | Msa0743800 | 0.808770 | 2.629997e-50 | -8.615850e-47 |
| Msa0143380 | Msa0743800 | 0.808413 | 3.135890e-50 | -8.615850e-47 |
| Msa0146260 | Msa0743800 | 0.825234 | 5.238639e-54 | -8.615850e-47 |
| Msa0148100 | Msa0743800 | 0.810089 | 1.370474e-50 | -8.615850e-47 |
| Msa0149390 | Msa0743800 | 0.818751 | 1.664706e-52 | -8.615850e-47 |
| Msa0185400 | Msa0743800 | 0.808109 | 3.639118e-50 | -8.615850e-47 |
| Msa0186890 | Msa0743800 | 0.802400 | 5.712695e-49 | -8.615850e-47 |
| Msa0197420 | Msa0743800 | 0.803914 | 2.777093e-49 | -8.615850e-47 |
| Msa0198700 | Msa0743800 | 0.800487 | 1.408143e-48 | -8.615850e-47 |
| Msa0205850 | Msa0743800 | 0.805562 | 1.257109e-49 | -8.615850e-47 |
| Msa0222920 | Msa0743800 | 0.800090 | 1.696840e-48 | -8.615850e-47 |
| Msa0225180 | Msa0743800 | 0.800622 | 1.321779e-48 | -8.615850e-47 |
| Msa0236980 | Msa0743800 | 0.801773 | 7.687131e-49 | -8.615850e-47 |
| Msa0372670 | Msa0743800 | 0.803739 | 3.019298e-49 | -8.615850e-47 |
| Msa0376040 | Msa0743800 | 0.806745 | 7.086604e-50 | -8.615850e-47 |
| Msa0376280 | Msa0743800 | 0.801350 | 9.384486e-49 | -8.615850e-47 |
| Msa0378980 | Msa0743800 | 0.801237 | 9.898182e-49 | -8.615850e-47 |
| Msa0393680 | Msa0743800 | 0.806102 | 9.683419e-50 | -8.615850e-47 |
| Msa0402330 | Msa0743800 | 0.806272 | 8.914655e-50 | -8.615850e-47 |
| Msa0410500 | Msa0743800 | 0.843337 | 1.491154e-58 | -8.615850e-47 |
| Msa0413450 | Msa0743800 | 0.840666 | 7.578286e-58 | -8.615850e-47 |
| Msa0416400 | Msa0743800 | 0.809178 | 2.151885e-50 | -8.615850e-47 |
| Msa0423900 | Msa0743800 | 0.843345 | 1.483871e-58 | -8.615850e-47 |
| Msa0447370 | Msa0743800 | 0.800828 | 1.200294e-48 | -8.615850e-47 |
| Msa0448750 | Msa0743800 | 0.808688 | 2.739039e-50 | -8.615850e-47 |
| Msa0462990 | Msa0743800 | 0.805056 | 1.605026e-49 | -8.615850e-47 |
| Msa0469910 | Msa0743800 | -0.805634 | 1.214153e-49 | -8.615850e-47 |
| Msa0474950 | Msa0743800 | 0.832227 | 1.066252e-55 | -8.615850e-47 |
| Msa0475790 | Msa0743800 | 0.830938 | 2.215569e-55 | -8.615850e-47 |
| Msa0239450 | Msa0743800 | 0.835103 | 2.038890e-56 | -8.615850e-47 |
| Msa0241800 | Msa0743800 | 0.803898 | 2.798446e-49 | -8.615850e-47 |
| Msa0248980 | Msa0743800 | 0.802801 | 4.721845e-49 | -8.615850e-47 |
| Msa0259560 | Msa0743800 | 0.824876 | 6.365277e-54 | -8.615850e-47 |
| Msa0264350 | Msa0743800 | 0.804503 | 2.093567e-49 | -8.615850e-47 |
| Msa0267870 | Msa0743800 | 0.814663 | 1.373610e-51 | -8.615850e-47 |
| Msa0287650 | Msa0743800 | 0.802679 | 5.002607e-49 | -8.615850e-47 |
| Msa0299890 | Msa0743800 | 0.810199 | 1.298235e-50 | -8.615850e-47 |
| Msa0300120 | Msa0743800 | 0.813124 | 3.000128e-51 | -8.615850e-47 |
| Msa0310410 | Msa0743800 | 0.835992 | 1.214652e-56 | -8.615850e-47 |
| Msa0311700 | Msa0743800 | 0.812233 | 4.699882e-51 | -8.615850e-47 |
| Msa0333920 | Msa0743800 | 0.814908 | 1.212493e-51 | -8.615850e-47 |
| Msa0334040 | Msa0743800 | 0.822037 | 2.934411e-53 | -8.615850e-47 |
| Msa0336030 | Msa0743800 | 0.813012 | 3.174129e-51 | -8.615850e-47 |
| Msa0355270 | Msa0743800 | 0.810522 | 1.105683e-50 | -8.615850e-47 |
| Msa0484290 | Msa0743800 | 0.813399 | 2.611053e-51 | -8.615850e-47 |
| Msa0490750 | Msa0743800 | 0.806549 | 7.792925e-50 | -8.615850e-47 |
| Msa0505150 | Msa0743800 | 0.827492 | 1.518720e-54 | -8.615850e-47 |
| Msa0515640 | Msa0743800 | 0.835792 | 1.365306e-56 | -8.615850e-47 |
| Msa0516040 | Msa0743800 | 0.804919 | 1.714152e-49 | -8.615850e-47 |
| Msa0524500 | Msa0743800 | 0.810660 | 1.031974e-50 | -8.615850e-47 |
| Msa0541860 | Msa0743800 | 0.800336 | 1.511854e-48 | -8.615850e-47 |
| Msa0547020 | Msa0743800 | 0.803695 | 3.083475e-49 | -8.615850e-47 |
| Msa0552810 | Msa0743800 | 0.843761 | 1.148770e-58 | -8.615850e-47 |
| Msa0555910 | Msa0743800 | 0.803105 | 4.086313e-49 | -8.615850e-47 |
| Msa0560470 | Msa0743800 | 0.855316 | 6.847191e-62 | -8.615850e-47 |
| Msa0580710 | Msa0743800 | 0.809235 | 2.091195e-50 | -8.615850e-47 |
| Msa0581070 | Msa0743800 | 0.829875 | 4.029480e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743800 | MtrunA17_Chr5g0445871 | 84.651 | 215 | 23 | 2 | 1 | 209 | 1 | 211 | 1.90e-106 | 305 |
| Msa0743800 | MtrunA17_Chr5g0445881 | 87.215 | 219 | 19 | 2 | 1 | 210 | 257 | 475 | 1.58e-94 | 283 |
| Msa0743800 | MtrunA17_Chr5g0445771 | 45.902 | 244 | 74 | 6 | 1 | 194 | 262 | 497 | 6.37e-39 | 139 |
| Msa0743800 | MtrunA17_Chr5g0445821 | 56.481 | 108 | 39 | 3 | 98 | 203 | 5 | 106 | 2.09e-24 | 92.8 |
| Msa0743800 | MtrunA17_Chr5g0445801 | 52.778 | 108 | 46 | 3 | 98 | 203 | 5 | 109 | 2.55e-19 | 79.7 |
| Msa0743800 | MtrunA17_Chr5g0445851 | 60.000 | 85 | 31 | 1 | 123 | 204 | 29 | 113 | 6.73e-18 | 75.9 |
| Msa0743800 | MtrunA17_Chr5g0446181 | 46.094 | 128 | 45 | 5 | 41 | 168 | 247 | 350 | 1.43e-17 | 79.7 |
| Msa0743800 | MtrunA17_Chr5g0445831 | 42.574 | 101 | 27 | 2 | 1 | 95 | 334 | 409 | 1.27e-14 | 71.6 |
| Msa0743800 | MtrunA17_Chr5g0434151 | 52.308 | 65 | 23 | 2 | 90 | 152 | 18 | 76 | 8.64e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAAGAGATTTGTGAAAA+AGG | 0.177538 | 5_1:-64301066 | Msa0743800:five_prime_UTR |
| GAGGAAAATGATTGGTAAAT+TGG | 0.230977 | 5_1:-64300782 | Msa0743800:five_prime_UTR |
| AGTGATACCACAGACCTTAT+TGG | 0.263574 | 5_1:+64298358 | None:intergenic |
| TGAGCTAGAGGCTAAGATTT+TGG | 0.268067 | 5_1:-64300860 | Msa0743800:five_prime_UTR |
| CTTGCACATCCTTGTTCCCT+TGG | 0.337027 | 5_1:+64300285 | None:intergenic |
| AACTATTAGCCAAAGTAATT+AGG | 0.340914 | 5_1:-64298296 | Msa0743800:three_prime_UTR |
| TAAGAAGAAGAATGAATTAG+AGG | 0.349069 | 5_1:-64300956 | Msa0743800:five_prime_UTR |
| CGTAAGATTGAGATATTACT+TGG | 0.360048 | 5_1:-64300563 | Msa0743800:five_prime_UTR |
| TAGGAATAAGGTTCGTGTAT+TGG | 0.381629 | 5_1:-64300689 | Msa0743800:five_prime_UTR |
| AGCTAGTGGAAGAGTGAAAC+TGG | 0.389413 | 5_1:-64298644 | Msa0743800:CDS |
| TTCTCGATGATCTTCCAATA+AGG | 0.392872 | 5_1:-64298372 | Msa0743800:CDS |
| TTTAACAGTGTCAGCTGCAT+TGG | 0.395113 | 5_1:+64298462 | None:intergenic |
| TAAATTGGAGCATGAAGTTT+CGG | 0.399727 | 5_1:-64300767 | Msa0743800:five_prime_UTR |
| TTGAAGAGTGTAGGTGTCTC+TGG | 0.402552 | 5_1:-64300473 | Msa0743800:CDS |
| AAGGAAACTATAAGTAGGTT+GGG | 0.404054 | 5_1:-64300617 | Msa0743800:five_prime_UTR |
| TCCTCTAAATTTCTTGTACA+TGG | 0.413034 | 5_1:+64300538 | None:intergenic |
| GAAGGAAACTATAAGTAGGT+TGG | 0.440805 | 5_1:-64300618 | Msa0743800:five_prime_UTR |
| GTCCCTGCTAATCACACTCT+TGG | 0.441563 | 5_1:-64300335 | Msa0743800:CDS |
| ATGTTATAGCCTAATTACTT+TGG | 0.444045 | 5_1:+64298287 | None:intergenic |
| TCCATGTACAAGAAATTTAG+AGG | 0.446165 | 5_1:-64300539 | Msa0743800:CDS |
| GATCTTCTTGACGATGAGTT+CGG | 0.446687 | 5_1:-64300380 | Msa0743800:CDS |
| TGAGGAAATCGAAGAAGAAA+TGG | 0.446716 | 5_1:-64300741 | Msa0743800:five_prime_UTR |
| TTAACAGTGTCAGCTGCATT+GGG | 0.447220 | 5_1:+64298463 | None:intergenic |
| TTAGTAGCCATAGGATCAAC+AGG | 0.451539 | 5_1:+64300425 | None:intergenic |
| ACCTACACTCTTCAAAAGAT+TGG | 0.453769 | 5_1:+64300481 | None:intergenic |
| ACTCCAAGAGTGTGATTAGC+AGG | 0.461799 | 5_1:+64300332 | None:intergenic |
| GCTGGACTTGAGGTTAGAAA+TGG | 0.469464 | 5_1:-64300647 | Msa0743800:five_prime_UTR |
| CTCTGGTGGTGGTAGTAATG+AGG | 0.471140 | 5_1:-64300456 | Msa0743800:CDS |
| GGTTAGAAATGGCGAGTTGA+AGG | 0.474088 | 5_1:-64300636 | Msa0743800:five_prime_UTR |
| ATCGTCGGAGGATGAAGAAC+TGG | 0.476363 | 5_1:+64298402 | None:intergenic |
| GAAGTCACCTGTTGATCCTA+TGG | 0.481237 | 5_1:-64300432 | Msa0743800:CDS |
| AAGAAGAAGAATGAATTAGA+GGG | 0.483632 | 5_1:-64300955 | Msa0743800:five_prime_UTR |
| GGTTGGAAGACTTTCGAGGT+TGG | 0.484020 | 5_1:-64300513 | Msa0743800:CDS |
| GGAGGATGAAGAACTGGCAC+TGG | 0.495184 | 5_1:+64298408 | None:intergenic |
| GGGTGATAAAATGCTTTGGC+TGG | 0.498074 | 5_1:-64300665 | Msa0743800:five_prime_UTR |
| GATGTGCAAGGTTCATCATC+AGG | 0.498818 | 5_1:-64300272 | Msa0743800:intron |
| AAGAAATTTAGAGGACTGGT+TGG | 0.504312 | 5_1:-64300530 | Msa0743800:CDS |
| GTGGAGGATAATAATGAACT+TGG | 0.505091 | 5_1:-64300811 | Msa0743800:five_prime_UTR |
| GTACAAGAAATTTAGAGGAC+TGG | 0.508835 | 5_1:-64300534 | Msa0743800:CDS |
| TGTGTTGCCACGGATGGACT+TGG | 0.510680 | 5_1:+64298502 | None:intergenic |
| AAAAGGTCATGTGGCTAACA+AGG | 0.513200 | 5_1:+64298253 | None:intergenic |
| TGGAGGGTGATAAAATGCTT+TGG | 0.513576 | 5_1:-64300669 | Msa0743800:five_prime_UTR |
| TGAGGAAGTTGAATGAAAAG+AGG | 0.516495 | 5_1:-64300834 | Msa0743800:five_prime_UTR |
| TGGAAGACTTTCGAGGTTGG+AGG | 0.517961 | 5_1:-64300510 | Msa0743800:CDS |
| AAATGCTTTGGCTGGACTTG+AGG | 0.519553 | 5_1:-64300657 | Msa0743800:five_prime_UTR |
| GAATAAGGTTCGTGTATTGG+AGG | 0.532923 | 5_1:-64300686 | Msa0743800:five_prime_UTR |
| GACTGGTTGGAAGACTTTCG+AGG | 0.538485 | 5_1:-64300517 | Msa0743800:CDS |
| AGTGTAGGTGTCTCTGGTGG+TGG | 0.543623 | 5_1:-64300467 | Msa0743800:CDS |
| AGTACTCAACCGCAGAGCCA+AGG | 0.547766 | 5_1:-64300302 | Msa0743800:CDS |
| GGGGAAAGAAAAGAGTAAGT+TGG | 0.547900 | 5_1:-64300597 | Msa0743800:five_prime_UTR |
| TATTGAAGACAGAGATGAAG+AGG | 0.548764 | 5_1:-64300402 | Msa0743800:CDS |
| TCTGGTGGTGGTAGTAATGA+GGG | 0.553890 | 5_1:-64300455 | Msa0743800:CDS |
| GAGGAAGTTGAATGAAAAGA+GGG | 0.555930 | 5_1:-64300833 | Msa0743800:five_prime_UTR |
| AAAATGTAGGCAGACGGGGC+AGG | 0.558347 | 5_1:-64298323 | Msa0743800:CDS |
| TCCTTGTTCCCTTGGCTCTG+CGG | 0.558940 | 5_1:+64300293 | None:intergenic |
| ACTCAGAGAAGAGCTTCACC+TGG | 0.560115 | 5_1:-64301130 | Msa0743800:five_prime_UTR |
| AAGAAAGAATGGTGAGCTAG+AGG | 0.561807 | 5_1:-64300872 | Msa0743800:five_prime_UTR |
| AGCATGAAGTTTCGGAGCTG+AGG | 0.564279 | 5_1:-64300759 | Msa0743800:five_prime_UTR |
| AGAAGAAGAATGAATTAGAG+GGG | 0.569093 | 5_1:-64300954 | Msa0743800:five_prime_UTR |
| GGTGTGTTGAGGAAAATGAT+TGG | 0.569444 | 5_1:-64300790 | Msa0743800:five_prime_UTR |
| CGTCGTCGTCGTCATCATCA+AGG | 0.575320 | 5_1:+64298599 | None:intergenic |
| AATAAGGTTCGTGTATTGGA+GGG | 0.576354 | 5_1:-64300685 | Msa0743800:five_prime_UTR |
| ACCGCAGAGCCAAGGGAACA+AGG | 0.578207 | 5_1:-64300294 | Msa0743800:CDS |
| TGGAATTGCTGTGAAGAATG+AGG | 0.583460 | 5_1:-64298527 | Msa0743800:CDS |
| AGGAAACTATAAGTAGGTTG+GGG | 0.587533 | 5_1:-64300616 | Msa0743800:five_prime_UTR |
| GAAGTTGAATGAAAAGAGGG+TGG | 0.590744 | 5_1:-64300830 | Msa0743800:five_prime_UTR |
| GTTGAATGAAAAGAGGGTGG+AGG | 0.590912 | 5_1:-64300827 | Msa0743800:five_prime_UTR |
| AGTTGAAGGAAACTATAAGT+AGG | 0.591344 | 5_1:-64300622 | Msa0743800:five_prime_UTR |
| GATGTGTTAAGAAGAAAGAA+TGG | 0.593843 | 5_1:-64300883 | Msa0743800:five_prime_UTR |
| ATCGAGAAATGACGAATCGT+CGG | 0.598864 | 5_1:+64298387 | None:intergenic |
| GTACTCAACCGCAGAGCCAA+GGG | 0.604360 | 5_1:-64300301 | Msa0743800:CDS |
| GAAGAAGAATGAATTAGAGG+GGG | 0.609017 | 5_1:-64300953 | Msa0743800:five_prime_UTR |
| GATGGTGGGTCTATGTCTCA+AGG | 0.610890 | 5_1:-64298574 | Msa0743800:CDS |
| ATAATGAACTTGGTGTGTTG+AGG | 0.614106 | 5_1:-64300801 | Msa0743800:five_prime_UTR |
| CGGAAATGACACTGTTGAGG+AGG | 0.614193 | 5_1:-64300360 | Msa0743800:CDS |
| ATAACCTTGAGAGTTTCTCC+AGG | 0.615756 | 5_1:+64301112 | None:intergenic |
| GAGAAATGACGAATCGTCGG+AGG | 0.623666 | 5_1:+64298390 | None:intergenic |
| GACGACGACGACGAGGATGG+TGG | 0.626330 | 5_1:-64298589 | Msa0743800:CDS |
| TGATCTTCCAATAAGGTCTG+TGG | 0.630656 | 5_1:-64298365 | Msa0743800:CDS |
| TCTTCAATATTAGTAGCCAT+AGG | 0.636021 | 5_1:+64300416 | None:intergenic |
| CAAGGGAACAAGGATGTGCA+AGG | 0.636506 | 5_1:-64300284 | Msa0743800:CDS |
| ACGACGACGACGAGGATGGT+GGG | 0.638608 | 5_1:-64298588 | Msa0743800:CDS |
| GTTCGGAAATGACACTGTTG+AGG | 0.644475 | 5_1:-64300363 | Msa0743800:CDS |
| TGAGGTTCCAAGTCCATCCG+TGG | 0.647482 | 5_1:-64298509 | Msa0743800:CDS |
| TTCACCTGGAGAAACTCTCA+AGG | 0.655090 | 5_1:-64301116 | Msa0743800:five_prime_UTR |
| TGATGATGACGACGACGACG+AGG | 0.656067 | 5_1:-64298596 | Msa0743800:CDS |
| CTGGTGGTGGTAGTAATGAG+GGG | 0.658244 | 5_1:-64300454 | Msa0743800:CDS |
| CTCCAAGAGTGTGATTAGCA+GGG | 0.666199 | 5_1:+64300333 | None:intergenic |
| GTAAGATTGAGATATTACTT+GGG | 0.675489 | 5_1:-64300562 | Msa0743800:five_prime_UTR |
| AAGAGTGTAGGTGTCTCTGG+TGG | 0.688326 | 5_1:-64300470 | Msa0743800:CDS |
| GATGACGACGACGACGAGGA+TGG | 0.692963 | 5_1:-64298592 | Msa0743800:CDS |
| GGTGGGTCTATGTCTCAAGG+AGG | 0.743834 | 5_1:-64298571 | Msa0743800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAACTTATTTTCTTT+TGG | + | chr5_1:64300451-64300470 | None:intergenic | 10.0% |
| !!! | GAAAAGTTACTAATATTTTT+GGG | + | chr5_1:64299741-64299760 | None:intergenic | 15.0% |
| !!! | AGAAAAGTTACTAATATTTT+TGG | + | chr5_1:64299742-64299761 | None:intergenic | 15.0% |
| !! | TTCAAAGTATAAACAATAAA+TGG | + | chr5_1:64300067-64300086 | None:intergenic | 15.0% |
| !! | CTCTAATTTCAAATTATGAT+GGG | + | chr5_1:64299315-64299334 | None:intergenic | 20.0% |
| !! | ACTCTAATTTCAAATTATGA+TGG | + | chr5_1:64299316-64299335 | None:intergenic | 20.0% |
| !! | AAGATAAACTCAATTAAAAC+CGG | - | chr5_1:64299354-64299373 | Msa0743800:intron | 20.0% |
| !!! | ATTAGTAACTTTTCTAGAAT+AGG | - | chr5_1:64299747-64299766 | Msa0743800:intron | 20.0% |
| !! | GTGTAAAATAATAACTTTCT+AGG | + | chr5_1:64300122-64300141 | None:intergenic | 20.0% |
| !!! | TTAAACTTATTTTCTTTTGG+TGG | + | chr5_1:64300448-64300467 | None:intergenic | 20.0% |
| !! | AAATAAAGTGAAAATCTTGT+TGG | - | chr5_1:64300475-64300494 | Msa0743800:CDS | 20.0% |
| !! | TTGAAAGAAGAAAAAAATGT+AGG | - | chr5_1:64301048-64301067 | Msa0743800:five_prime_UTR | 20.0% |
| ! | TAAGAAGAAGAATGAATTAG+AGG | - | chr5_1:64298428-64298447 | Msa0743800:CDS | 25.0% |
| ! | AAGAAGAAGAATGAATTAGA+GGG | - | chr5_1:64298429-64298448 | Msa0743800:CDS | 25.0% |
| !! | AAGAAAAAATGTGTTGATGA+TGG | - | chr5_1:64298468-64298487 | Msa0743800:CDS | 25.0% |
| ! | GTAAGATTGAGATATTACTT+GGG | - | chr5_1:64298822-64298841 | Msa0743800:intron | 25.0% |
| ! | ATATTGAATTTACGTGTGAT+CGG | - | chr5_1:64299202-64299221 | Msa0743800:intron | 25.0% |
| ! | AAACAAGAAAATCATGTACA+AGG | + | chr5_1:64299261-64299280 | None:intergenic | 25.0% |
| !!! | AAATTATGATGGGTAGTTAA+TGG | + | chr5_1:64299305-64299324 | None:intergenic | 25.0% |
| ! | AGATAAACTCAATTAAAACC+GGG | - | chr5_1:64299355-64299374 | Msa0743800:intron | 25.0% |
| !!! | TCAAATAAATTTTGGTTCCA+GGG | - | chr5_1:64299566-64299585 | Msa0743800:intron | 25.0% |
| ! | TGGAAGATAAATTAATGAGA+CGG | - | chr5_1:64299667-64299686 | Msa0743800:intron | 25.0% |
| ! | AAACAATAAATGGTTTCAGA+AGG | + | chr5_1:64300057-64300076 | None:intergenic | 25.0% |
| ! | TGAAAATCTTGTTGGATTAT+GGG | - | chr5_1:64300483-64300502 | Msa0743800:CDS | 25.0% |
| ! | AGAACAACAATATAAAAGAG+AGG | + | chr5_1:64300607-64300626 | None:intergenic | 25.0% |
| ! | AACTATTAGCCAAAGTAATT+AGG | - | chr5_1:64301088-64301107 | Msa0743800:five_prime_UTR | 25.0% |
| ! | ATGTTATAGCCTAATTACTT+TGG | + | chr5_1:64301100-64301119 | None:intergenic | 25.0% |
| ! | GTTTAAAAAAAAAGGTCATG+TGG | + | chr5_1:64301143-64301162 | None:intergenic | 25.0% |
| ! | CTCTTCTCTTTTCTTAAACT+CGG | + | chr5_1:64298307-64298326 | None:intergenic | 30.0% |
| AGAGAAGAGATTTGTGAAAA+AGG | - | chr5_1:64298318-64298337 | Msa0743800:CDS | 30.0% | |
| GAGAAGAGATTTGTGAAAAA+GGG | - | chr5_1:64298319-64298338 | Msa0743800:CDS | 30.0% | |
| !! | AGCACTTTTGAAAGAAGTTA+AGG | - | chr5_1:64298365-64298384 | Msa0743800:CDS | 30.0% |
| AGAAGAAGAATGAATTAGAG+GGG | - | chr5_1:64298430-64298449 | Msa0743800:CDS | 30.0% | |
| GATGTGTTAAGAAGAAAGAA+TGG | - | chr5_1:64298501-64298520 | Msa0743800:CDS | 30.0% | |
| GAGGAAAATGATTGGTAAAT+TGG | - | chr5_1:64298602-64298621 | Msa0743800:CDS | 30.0% | |
| TAAATTGGAGCATGAAGTTT+CGG | - | chr5_1:64298617-64298636 | Msa0743800:CDS | 30.0% | |
| AGTTGAAGGAAACTATAAGT+AGG | - | chr5_1:64298762-64298781 | Msa0743800:intron | 30.0% | |
| AAGGAAACTATAAGTAGGTT+GGG | - | chr5_1:64298767-64298786 | Msa0743800:intron | 30.0% | |
| CGTAAGATTGAGATATTACT+TGG | - | chr5_1:64298821-64298840 | Msa0743800:intron | 30.0% | |
| TCCATGTACAAGAAATTTAG+AGG | - | chr5_1:64298845-64298864 | Msa0743800:intron | 30.0% | |
| TCCTCTAAATTTCTTGTACA+TGG | + | chr5_1:64298849-64298868 | None:intergenic | 30.0% | |
| TCTTCAATATTAGTAGCCAT+AGG | + | chr5_1:64298971-64298990 | None:intergenic | 30.0% | |
| AAATGTTAGATCAGATTGCT+AGG | - | chr5_1:64299227-64299246 | Msa0743800:intron | 30.0% | |
| CAATTAAAACCGGGATATTA+TGG | - | chr5_1:64299364-64299383 | Msa0743800:intron | 30.0% | |
| ! | ATCTGATTTTCCAATGGAAA+TGG | - | chr5_1:64299515-64299534 | Msa0743800:intron | 30.0% |
| ! | GTGGAACCTCAAATAAATTT+TGG | - | chr5_1:64299558-64299577 | Msa0743800:intron | 30.0% |
| CTGGAACCAAAATTTATTTG+AGG | + | chr5_1:64299567-64299586 | None:intergenic | 30.0% | |
| !!! | CTCAAATAAATTTTGGTTCC+AGG | - | chr5_1:64299565-64299584 | Msa0743800:intron | 30.0% |
| ! | ATCATTCTTTTGACCTCTTT+AGG | - | chr5_1:64299956-64299975 | Msa0743800:intron | 30.0% |
| !!! | GAAAATCGTTTTAGGAAACA+TGG | + | chr5_1:64300146-64300165 | None:intergenic | 30.0% |
| ! | TCTTGGTTGAAAATCGTTTT+AGG | + | chr5_1:64300154-64300173 | None:intergenic | 30.0% |
| AAAAAGGGACTTAATTGTTG+TGG | - | chr5_1:64300218-64300237 | Msa0743800:intron | 30.0% | |
| ACATAAGAAAGAAACAAGAG+TGG | - | chr5_1:64300333-64300352 | Msa0743800:CDS | 30.0% | |
| !! | ACTTATTTTCTTTTGGTGGA+AGG | + | chr5_1:64300444-64300463 | None:intergenic | 30.0% |
| GTGAAAATCTTGTTGGATTA+TGG | - | chr5_1:64300482-64300501 | Msa0743800:CDS | 30.0% | |
| !! | CATGAAAAGAAAGCTGTTTT+TGG | - | chr5_1:64300837-64300856 | Msa0743800:five_prime_UTR | 30.0% |
| AAGAAAAAAATGTAGGCAGA+CGG | - | chr5_1:64301055-64301074 | Msa0743800:five_prime_UTR | 30.0% | |
| GAAGAAGAATGAATTAGAGG+GGG | - | chr5_1:64298431-64298450 | Msa0743800:CDS | 35.0% | |
| TGAGGAAGTTGAATGAAAAG+AGG | - | chr5_1:64298550-64298569 | Msa0743800:CDS | 35.0% | |
| GAGGAAGTTGAATGAAAAGA+GGG | - | chr5_1:64298551-64298570 | Msa0743800:CDS | 35.0% | |
| GTGGAGGATAATAATGAACT+TGG | - | chr5_1:64298573-64298592 | Msa0743800:CDS | 35.0% | |
| !! | ATAATGAACTTGGTGTGTTG+AGG | - | chr5_1:64298583-64298602 | Msa0743800:CDS | 35.0% |
| TGAGGAAATCGAAGAAGAAA+TGG | - | chr5_1:64298643-64298662 | Msa0743800:CDS | 35.0% | |
| ! | TTTTGATGCGCTTAGGAATA+AGG | - | chr5_1:64298683-64298702 | Msa0743800:intron | 35.0% |
| TAGGAATAAGGTTCGTGTAT+TGG | - | chr5_1:64298695-64298714 | Msa0743800:intron | 35.0% | |
| AATAAGGTTCGTGTATTGGA+GGG | - | chr5_1:64298699-64298718 | Msa0743800:intron | 35.0% | |
| GAAGGAAACTATAAGTAGGT+TGG | - | chr5_1:64298766-64298785 | Msa0743800:intron | 35.0% | |
| AGGAAACTATAAGTAGGTTG+GGG | - | chr5_1:64298768-64298787 | Msa0743800:intron | 35.0% | |
| GTACAAGAAATTTAGAGGAC+TGG | - | chr5_1:64298850-64298869 | Msa0743800:intron | 35.0% | |
| ! | AAGAAATTTAGAGGACTGGT+TGG | - | chr5_1:64298854-64298873 | Msa0743800:intron | 35.0% |
| !! | ACCAATCTTTTGAAGAGTGT+AGG | - | chr5_1:64298902-64298921 | Msa0743800:intron | 35.0% |
| ACCTACACTCTTCAAAAGAT+TGG | + | chr5_1:64298906-64298925 | None:intergenic | 35.0% | |
| TATTGAAGACAGAGATGAAG+AGG | - | chr5_1:64298982-64299001 | Msa0743800:intron | 35.0% | |
| AAGGTTCATCATCAGGTATA+TGG | - | chr5_1:64299119-64299138 | Msa0743800:intron | 35.0% | |
| ACCGGGATATTATGGTAATA+TGG | - | chr5_1:64299372-64299391 | Msa0743800:intron | 35.0% | |
| CCCATATTACCATAATATCC+CGG | + | chr5_1:64299376-64299395 | None:intergenic | 35.0% | |
| CCGGGATATTATGGTAATAT+GGG | - | chr5_1:64299373-64299392 | Msa0743800:intron | 35.0% | |
| ! | TGAATTGTGACTTTTGATGC+TGG | - | chr5_1:64299411-64299430 | Msa0743800:intron | 35.0% |
| ! | AGCTGAATCTGATTTTCCAA+TGG | - | chr5_1:64299509-64299528 | Msa0743800:intron | 35.0% |
| ! | AATGCTACTTCCATTTCCAT+TGG | + | chr5_1:64299528-64299547 | None:intergenic | 35.0% |
| !!! | AATAAATTTTGGTTCCAGGG+AGG | - | chr5_1:64299569-64299588 | Msa0743800:intron | 35.0% |
| CATGTCTTGTCAATTGCATA+TGG | + | chr5_1:64299605-64299624 | None:intergenic | 35.0% | |
| AACTCTCAAGCCTGAAATTA+GGG | + | chr5_1:64299695-64299714 | None:intergenic | 35.0% | |
| ACCAATTGTGTCATGATTGT+TGG | - | chr5_1:64299798-64299817 | Msa0743800:intron | 35.0% | |
| ACCAACAATCATGACACAAT+TGG | + | chr5_1:64299802-64299821 | None:intergenic | 35.0% | |
| ! | TGAATGAGAGTGGTAATGTA+GGG | - | chr5_1:64299896-64299915 | Msa0743800:intron | 35.0% |
| ACTTCTAACCTAGAAAGAGA+TGG | - | chr5_1:64299925-64299944 | Msa0743800:intron | 35.0% | |
| AACGAGATATGTTCCTAAAG+AGG | + | chr5_1:64299972-64299991 | None:intergenic | 35.0% | |
| AACTTTCTAGGTAAGAAGCA+AGG | + | chr5_1:64300110-64300129 | None:intergenic | 35.0% | |
| ! | TGTCATAAGTGCTGTTGAAA+AGG | - | chr5_1:64300262-64300281 | Msa0743800:intron | 35.0% |
| CTCATCTGAATGTTCATCTT+TGG | + | chr5_1:64300406-64300425 | None:intergenic | 35.0% | |
| !!! | TTGGTGGAAGGTGTTTTAAT+AGG | + | chr5_1:64300432-64300451 | None:intergenic | 35.0% |
| ! | TTGGATTATGGGTTGAAGTT+TGG | - | chr5_1:64300494-64300513 | Msa0743800:CDS | 35.0% |
| ! | ATTATGGGTTGAAGTTTGGA+AGG | - | chr5_1:64300498-64300517 | Msa0743800:CDS | 35.0% |
| CAGCAGAAACTTGGAAAATA+AGG | + | chr5_1:64300650-64300669 | None:intergenic | 35.0% | |
| !! | CTTATTTTCCAAGTTTCTGC+TGG | - | chr5_1:64300648-64300667 | Msa0743800:five_prime_UTR | 35.0% |
| ATAATACTCCAGCAGAAACT+TGG | + | chr5_1:64300659-64300678 | None:intergenic | 35.0% | |
| ! | TGCTGGAGTATTATCATGTT+TGG | - | chr5_1:64300665-64300684 | Msa0743800:five_prime_UTR | 35.0% |
| ! | TCTCTTTTTGTATCAGCTAG+TGG | - | chr5_1:64300726-64300745 | Msa0743800:five_prime_UTR | 35.0% |
| TTCTCGATGATCTTCCAATA+AGG | - | chr5_1:64301012-64301031 | Msa0743800:five_prime_UTR | 35.0% | |
| AGAAAAAAATGTAGGCAGAC+GGG | - | chr5_1:64301056-64301075 | Msa0743800:five_prime_UTR | 35.0% | |
| ATAACCTTGAGAGTTTCTCC+AGG | + | chr5_1:64298275-64298294 | None:intergenic | 40.0% | |
| AAGAAAGAATGGTGAGCTAG+AGG | - | chr5_1:64298512-64298531 | Msa0743800:CDS | 40.0% | |
| ! | TGAGCTAGAGGCTAAGATTT+TGG | - | chr5_1:64298524-64298543 | Msa0743800:CDS | 40.0% |
| !!! | AGGCTAAGATTTTGGAGTTG+AGG | - | chr5_1:64298532-64298551 | Msa0743800:CDS | 40.0% |
| GAAGTTGAATGAAAAGAGGG+TGG | - | chr5_1:64298554-64298573 | Msa0743800:CDS | 40.0% | |
| GGTGTGTTGAGGAAAATGAT+TGG | - | chr5_1:64298594-64298613 | Msa0743800:CDS | 40.0% | |
| GAATAAGGTTCGTGTATTGG+AGG | - | chr5_1:64298698-64298717 | Msa0743800:intron | 40.0% | |
| TGGAGGGTGATAAAATGCTT+TGG | - | chr5_1:64298715-64298734 | Msa0743800:intron | 40.0% | |
| GGGGAAAGAAAAGAGTAAGT+TGG | - | chr5_1:64298787-64298806 | Msa0743800:intron | 40.0% | |
| TTAGTAGCCATAGGATCAAC+AGG | + | chr5_1:64298962-64298981 | None:intergenic | 40.0% | |
| GATCTTCTTGACGATGAGTT+CGG | - | chr5_1:64299004-64299023 | Msa0743800:intron | 40.0% | |
| TGTTAGATCAGATTGCTAGG+TGG | - | chr5_1:64299230-64299249 | Msa0743800:intron | 40.0% | |
| TGGTAATATGGGTCTCTAGA+TGG | - | chr5_1:64299384-64299403 | Msa0743800:intron | 40.0% | |
| AAGATGAATGAGCCTTAGAG+AGG | + | chr5_1:64299443-64299462 | None:intergenic | 40.0% | |
| !! | CTTGCTTAGGTTGAGTAACA+TGG | + | chr5_1:64299470-64299489 | None:intergenic | 40.0% |
| !! | AGAGAGTCAATAGCTTGCTT+AGG | + | chr5_1:64299483-64299502 | None:intergenic | 40.0% |
| ACATGCTGAGAAAGCTACTT+TGG | - | chr5_1:64299647-64299666 | Msa0743800:intron | 40.0% | |
| CAACTCTCAAGCCTGAAATT+AGG | + | chr5_1:64299696-64299715 | None:intergenic | 40.0% | |
| TGTGTCATGATTGTTGGTCA+AGG | - | chr5_1:64299804-64299823 | Msa0743800:intron | 40.0% | |
| GAAAGAGTAGTGAATGAGAG+TGG | - | chr5_1:64299886-64299905 | Msa0743800:intron | 40.0% | |
| ! | GTGAATGAGAGTGGTAATGT+AGG | - | chr5_1:64299895-64299914 | Msa0743800:intron | 40.0% |
| ! | GAATGAGAGTGGTAATGTAG+GGG | - | chr5_1:64299897-64299916 | Msa0743800:intron | 40.0% |
| CATTCACACCATCTCTTTCT+AGG | + | chr5_1:64299936-64299955 | None:intergenic | 40.0% | |
| TGAAGTAGCAAAACCAGCAA+GGG | - | chr5_1:64300187-64300206 | Msa0743800:intron | 40.0% | |
| TGTTGAAAAGGAAGTCAGGA+AGG | - | chr5_1:64300274-64300293 | Msa0743800:CDS | 40.0% | |
| AGAAACAAGAGTGGTAGTCA+TGG | - | chr5_1:64300342-64300361 | Msa0743800:CDS | 40.0% | |
| GAGTGGTAGTCATGGTTAAA+TGG | - | chr5_1:64300350-64300369 | Msa0743800:CDS | 40.0% | |
| TGGAATTGCTGTGAAGAATG+AGG | - | chr5_1:64300857-64300876 | Msa0743800:five_prime_UTR | 40.0% | |
| !!! | GCTTTTTTGTTGTGTTGCCA+CGG | + | chr5_1:64300895-64300914 | None:intergenic | 40.0% |
| TTAACAGTGTCAGCTGCATT+GGG | + | chr5_1:64300924-64300943 | None:intergenic | 40.0% | |
| TTTAACAGTGTCAGCTGCAT+TGG | + | chr5_1:64300925-64300944 | None:intergenic | 40.0% | |
| ATCGAGAAATGACGAATCGT+CGG | + | chr5_1:64301000-64301019 | None:intergenic | 40.0% | |
| TGATCTTCCAATAAGGTCTG+TGG | - | chr5_1:64301019-64301038 | Msa0743800:five_prime_UTR | 40.0% | |
| AGTGATACCACAGACCTTAT+TGG | + | chr5_1:64301029-64301048 | None:intergenic | 40.0% | |
| GAAAAAAATGTAGGCAGACG+GGG | - | chr5_1:64301057-64301076 | Msa0743800:five_prime_UTR | 40.0% | |
| AAAAGGTCATGTGGCTAACA+AGG | + | chr5_1:64301134-64301153 | None:intergenic | 40.0% | |
| TTCACCTGGAGAAACTCTCA+AGG | - | chr5_1:64298268-64298287 | Msa0743800:three_prime_UTR | 45.0% | |
| GTTGAATGAAAAGAGGGTGG+AGG | - | chr5_1:64298557-64298576 | Msa0743800:CDS | 45.0% | |
| ! | GCAATGCTTTTGATGCGCTT+AGG | - | chr5_1:64298676-64298695 | Msa0743800:intron | 45.0% |
| GGGTGATAAAATGCTTTGGC+TGG | - | chr5_1:64298719-64298738 | Msa0743800:intron | 45.0% | |
| AAATGCTTTGGCTGGACTTG+AGG | - | chr5_1:64298727-64298746 | Msa0743800:intron | 45.0% | |
| GCTGGACTTGAGGTTAGAAA+TGG | - | chr5_1:64298737-64298756 | Msa0743800:intron | 45.0% | |
| ! | GGTTAGAAATGGCGAGTTGA+AGG | - | chr5_1:64298748-64298767 | Msa0743800:intron | 45.0% |
| ! | TTGAAGAGTGTAGGTGTCTC+TGG | - | chr5_1:64298911-64298930 | Msa0743800:intron | 45.0% |
| !! | TCTGGTGGTGGTAGTAATGA+GGG | - | chr5_1:64298929-64298948 | Msa0743800:intron | 45.0% |
| GAAGTCACCTGTTGATCCTA+TGG | - | chr5_1:64298952-64298971 | Msa0743800:intron | 45.0% | |
| GTTCGGAAATGACACTGTTG+AGG | - | chr5_1:64299021-64299040 | Msa0743800:intron | 45.0% | |
| ! | CTCCAAGAGTGTGATTAGCA+GGG | + | chr5_1:64299054-64299073 | None:intergenic | 45.0% |
| ! | ACTCCAAGAGTGTGATTAGC+AGG | + | chr5_1:64299055-64299074 | None:intergenic | 45.0% |
| GATGTGCAAGGTTCATCATC+AGG | - | chr5_1:64299112-64299131 | Msa0743800:intron | 45.0% | |
| GATCAGATTGCTAGGTGGAT+TGG | - | chr5_1:64299235-64299254 | Msa0743800:intron | 45.0% | |
| !! | TGCTGGTTTCTTCCTCTCTA+AGG | - | chr5_1:64299428-64299447 | Msa0743800:intron | 45.0% |
| !! | AGTAGCATTGACGTGAACTG+TGG | - | chr5_1:64299539-64299558 | Msa0743800:intron | 45.0% |
| TGGTCTACAGTCAGTTCTCT+AGG | + | chr5_1:64299782-64299801 | None:intergenic | 45.0% | |
| TTGGTCAAGGCTCAAGAAAG+TGG | - | chr5_1:64299817-64299836 | Msa0743800:intron | 45.0% | |
| AAGAAAGTGGTTGAGATGCC+AGG | - | chr5_1:64299830-64299849 | Msa0743800:intron | 45.0% | |
| AGAAAGTGGTTGAGATGCCA+GGG | - | chr5_1:64299831-64299850 | Msa0743800:intron | 45.0% | |
| TCAACCAAGATGCTCTCACT+TGG | - | chr5_1:64300164-64300183 | Msa0743800:intron | 45.0% | |
| !! | TTCACCAAGTGAGAGCATCT+TGG | + | chr5_1:64300171-64300190 | None:intergenic | 45.0% |
| GTGAAGTAGCAAAACCAGCA+AGG | - | chr5_1:64300186-64300205 | Msa0743800:intron | 45.0% | |
| ! | TTTTTCGCTATTGCCCTTGC+TGG | + | chr5_1:64300203-64300222 | None:intergenic | 45.0% |
| AGCAAGGGCAATAGCGAAAA+AGG | - | chr5_1:64300202-64300221 | Msa0743800:intron | 45.0% | |
| GCAAGGGCAATAGCGAAAAA+GGG | - | chr5_1:64300203-64300222 | Msa0743800:intron | 45.0% | |
| ! | GTGCTGTTGAAAAGGAAGTC+AGG | - | chr5_1:64300270-64300289 | Msa0743800:intron | 45.0% |
| GGTTGAAGTTTGGAAGGTCA+TGG | - | chr5_1:64300504-64300523 | Msa0743800:CDS | 45.0% | |
| ACACTCTAGGTTCGGCTAAA+AGG | + | chr5_1:64300559-64300578 | None:intergenic | 45.0% | |
| AGCTAGTGGAAGAGTGAAAC+TGG | - | chr5_1:64300740-64300759 | Msa0743800:five_prime_UTR | 45.0% | |
| !! | TTTTGTTGTGTTGCCACGGA+TGG | + | chr5_1:64300891-64300910 | None:intergenic | 45.0% |
| ACTCAGAGAAGAGCTTCACC+TGG | - | chr5_1:64298254-64298273 | Msa0743800:three_prime_UTR | 50.0% | |
| AGCATGAAGTTTCGGAGCTG+AGG | - | chr5_1:64298625-64298644 | Msa0743800:CDS | 50.0% | |
| ! | GACTGGTTGGAAGACTTTCG+AGG | - | chr5_1:64298867-64298886 | Msa0743800:intron | 50.0% |
| GGTTGGAAGACTTTCGAGGT+TGG | - | chr5_1:64298871-64298890 | Msa0743800:intron | 50.0% | |
| TGGAAGACTTTCGAGGTTGG+AGG | - | chr5_1:64298874-64298893 | Msa0743800:intron | 50.0% | |
| ! | AAGAGTGTAGGTGTCTCTGG+TGG | - | chr5_1:64298914-64298933 | Msa0743800:intron | 50.0% |
| !! | CTCTGGTGGTGGTAGTAATG+AGG | - | chr5_1:64298928-64298947 | Msa0743800:intron | 50.0% |
| !! | CTGGTGGTGGTAGTAATGAG+GGG | - | chr5_1:64298930-64298949 | Msa0743800:intron | 50.0% |
| CGGAAATGACACTGTTGAGG+AGG | - | chr5_1:64299024-64299043 | Msa0743800:intron | 50.0% | |
| GTCCCTGCTAATCACACTCT+TGG | - | chr5_1:64299049-64299068 | Msa0743800:intron | 50.0% | |
| CTTGCACATCCTTGTTCCCT+TGG | + | chr5_1:64299102-64299121 | None:intergenic | 50.0% | |
| CAAGGGAACAAGGATGTGCA+AGG | - | chr5_1:64299100-64299119 | Msa0743800:intron | 50.0% | |
| ATGGCGAAGAAAAACCTCCC+TGG | + | chr5_1:64299586-64299605 | None:intergenic | 50.0% | |
| TGAGACGGAGCCCTAATTTC+AGG | - | chr5_1:64299682-64299701 | Msa0743800:intron | 50.0% | |
| TCAGGCTTGAGAGTTGAGAC+AGG | - | chr5_1:64299700-64299719 | Msa0743800:intron | 50.0% | |
| CAGGCTTGAGAGTTGAGACA+GGG | - | chr5_1:64299701-64299720 | Msa0743800:intron | 50.0% | |
| TTGAGATGCCAGGGTCTAGT+GGG | - | chr5_1:64299840-64299859 | Msa0743800:intron | 50.0% | |
| ! | TGAGAGTGGTAATGTAGGGG+AGG | - | chr5_1:64299900-64299919 | Msa0743800:intron | 50.0% |
| CAGACGAGACACTCTAGGTT+CGG | + | chr5_1:64300567-64300586 | None:intergenic | 50.0% | |
| ! | AACCTAGAGTGTCTCGTCTG+AGG | - | chr5_1:64300567-64300586 | Msa0743800:five_prime_UTR | 50.0% |
| AACCTCAGACGAGACACTCT+AGG | + | chr5_1:64300572-64300591 | None:intergenic | 50.0% | |
| !! | GATGGTGGGTCTATGTCTCA+AGG | - | chr5_1:64300810-64300829 | Msa0743800:five_prime_UTR | 50.0% |
| ATCGTCGGAGGATGAAGAAC+TGG | + | chr5_1:64300985-64301004 | None:intergenic | 50.0% | |
| GAGAAATGACGAATCGTCGG+AGG | + | chr5_1:64300997-64301016 | None:intergenic | 50.0% | |
| AGTGTAGGTGTCTCTGGTGG+TGG | - | chr5_1:64298917-64298936 | Msa0743800:intron | 55.0% | |
| AGTACTCAACCGCAGAGCCA+AGG | - | chr5_1:64299082-64299101 | Msa0743800:intron | 55.0% | |
| GTACTCAACCGCAGAGCCAA+GGG | - | chr5_1:64299083-64299102 | Msa0743800:intron | 55.0% | |
| !! | TCCTTGTTCCCTTGGCTCTG+CGG | + | chr5_1:64299094-64299113 | None:intergenic | 55.0% |
| TTGAGACAGGGCTGTGCTTC+AGG | - | chr5_1:64299713-64299732 | Msa0743800:intron | 55.0% | |
| GTTGAGATGCCAGGGTCTAG+TGG | - | chr5_1:64299839-64299858 | Msa0743800:intron | 55.0% | |
| AACTAGCTCCCACTAGACCC+TGG | + | chr5_1:64299851-64299870 | None:intergenic | 55.0% | |
| CGTCGTCGTCGTCATCATCA+AGG | + | chr5_1:64300788-64300807 | None:intergenic | 55.0% | |
| ! | TGATGATGACGACGACGACG+AGG | - | chr5_1:64300788-64300807 | Msa0743800:five_prime_UTR | 55.0% |
| GGTGGGTCTATGTCTCAAGG+AGG | - | chr5_1:64300813-64300832 | Msa0743800:five_prime_UTR | 55.0% | |
| TGAGGTTCCAAGTCCATCCG+TGG | - | chr5_1:64300875-64300894 | Msa0743800:five_prime_UTR | 55.0% | |
| ! | TGTGTTGCCACGGATGGACT+TGG | + | chr5_1:64300885-64300904 | None:intergenic | 55.0% |
| GGAGGATGAAGAACTGGCAC+TGG | + | chr5_1:64300979-64300998 | None:intergenic | 55.0% | |
| AAAATGTAGGCAGACGGGGC+AGG | - | chr5_1:64301061-64301080 | Msa0743800:five_prime_UTR | 55.0% | |
| ACCGCAGAGCCAAGGGAACA+AGG | - | chr5_1:64299090-64299109 | Msa0743800:intron | 60.0% | |
| GATGACGACGACGACGAGGA+TGG | - | chr5_1:64300792-64300811 | Msa0743800:five_prime_UTR | 60.0% | |
| ACGACGACGACGAGGATGGT+GGG | - | chr5_1:64300796-64300815 | Msa0743800:five_prime_UTR | 60.0% | |
| GACGACGACGACGAGGATGG+TGG | - | chr5_1:64300795-64300814 | Msa0743800:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 64298237 | 64301169 | 64298237 | ID=Msa0743800;Name=Msa0743800 |
| chr5_1 | mRNA | 64298237 | 64301169 | 64298237 | ID=Msa0743800-mRNA-1;Parent=Msa0743800;Name=Msa0743800-mRNA-1;_AED=0.42;_eAED=0.42;_QI=611|1|1|1|1|1|2|81|210 |
| chr5_1 | exon | 64298237 | 64298664 | 64298237 | ID=Msa0743800-mRNA-1:exon:19040;Parent=Msa0743800-mRNA-1 |
| chr5_1 | exon | 64300273 | 64301169 | 64300273 | ID=Msa0743800-mRNA-1:exon:19039;Parent=Msa0743800-mRNA-1 |
| chr5_1 | five_prime_UTR | 64300559 | 64301169 | 64300559 | ID=Msa0743800-mRNA-1:five_prime_utr;Parent=Msa0743800-mRNA-1 |
| chr5_1 | CDS | 64300273 | 64300558 | 64300273 | ID=Msa0743800-mRNA-1:cds;Parent=Msa0743800-mRNA-1 |
| chr5_1 | CDS | 64298318 | 64298664 | 64298318 | ID=Msa0743800-mRNA-1:cds;Parent=Msa0743800-mRNA-1 |
| chr5_1 | three_prime_UTR | 64298237 | 64298317 | 64298237 | ID=Msa0743800-mRNA-1:three_prime_utr;Parent=Msa0743800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
