AlfalfaGEDB | Msa0628360

M. sativa cultivar zhongmu-4 / Msa0628360

KEGG: K14484
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02309.19

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628360	XP_013454733.1	99.438	178	1	0	1	178	1	178	2.72e-125	360

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628360	sp\|P49680\|IAA6_PEA	93.296	179	11	1	1	178	1	179	2.46e-110	315

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification
Msa0628360	TR	AUX/IAA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0628360	0.824845	6.473845e-54	-8.615850e-47
Msa0022550	Msa0628360	0.807840	4.153547e-50	-8.615850e-47
Msa0028640	Msa0628360	0.808174	3.525874e-50	-8.615850e-47
Msa0101810	Msa0628360	-0.801016	1.098445e-48	-8.615850e-47
Msa0105420	Msa0628360	0.800002	1.767443e-48	-8.615850e-47
Msa0110970	Msa0628360	0.812971	3.241100e-51	-8.615850e-47
Msa0118570	Msa0628360	0.812086	5.059546e-51	-8.615850e-47
Msa0628360	Msa0642720	0.813854	2.073131e-51	-8.615850e-47
Msa0628360	Msa0691050	0.811642	6.320315e-51	-8.615850e-47
Msa0628360	Msa0696640	0.811794	5.858273e-51	-8.615850e-47
Msa0628360	Msa0702590	0.809819	1.567346e-50	-8.615850e-47
Msa0628360	Msa0756630	-0.804786	1.827945e-49	-8.615850e-47
Msa0628360	Msa0795390	0.820270	7.493425e-53	-8.615850e-47
Msa0628360	Msa0824660	0.800191	1.618355e-48	-8.615850e-47
Msa0628360	Msa0834880	0.809069	2.270695e-50	-8.615850e-47
Msa0628360	Msa0880140	0.823838	1.116775e-53	-8.615850e-47
Msa0628360	Msa0896540	0.801112	1.050018e-48	-8.615850e-47
Msa0628360	Msa0896750	0.800901	1.159536e-48	-8.615850e-47
Msa0628360	Msa0898670	0.806394	8.404472e-50	-8.615850e-47
Msa0628360	Msa0908050	0.812804	3.526032e-51	-8.615850e-47
Msa0628360	Msa0921330	0.803920	2.768324e-49	-8.615850e-47
Msa0628360	Msa0930780	0.810172	1.315702e-50	-8.615850e-47
Msa0628360	Msa0969520	0.801638	8.192329e-49	-8.615850e-47
Msa0628360	Msa1024740	0.824408	8.203378e-54	-8.615850e-47
Msa0628360	Msa1031930	0.805256	1.457274e-49	-8.615850e-47
Msa0628360	Msa1037920	0.846617	1.941012e-59	-8.615850e-47
Msa0628360	Msa1085200	0.802092	6.611150e-49	-8.615850e-47
Msa0628360	Msa1097640	0.814889	1.224226e-51	-8.615850e-47
Msa0628360	Msa1108790	0.813252	2.812154e-51	-8.615850e-47
Msa0628360	Msa1118610	0.800107	1.683227e-48	-8.615850e-47
Msa0628360	Msa1125940	0.802319	5.935169e-49	-8.615850e-47
Msa0628360	Msa1129980	0.837418	5.259511e-57	-8.615850e-47
Msa0628360	Msa1139810	0.810069	1.384261e-50	-8.615850e-47
Msa0628360	Msa1140690	0.809321	2.004833e-50	-8.615850e-47
Msa0628360	Msa1151910	0.824852	6.447733e-54	-8.615850e-47
Msa0628360	Msa1152510	0.825497	4.540263e-54	-8.615850e-47
Msa0628360	Msa1172670	0.803846	2.868303e-49	-8.615850e-47
Msa0628360	Msa1219580	0.813852	2.074840e-51	-8.615850e-47
Msa0628360	Msa1224840	0.809945	1.472040e-50	-8.615850e-47
Msa0628360	Msa1238930	0.803002	4.292091e-49	-8.615850e-47
Msa0628360	Msa1313150	0.821595	3.714102e-53	-8.615850e-47
Msa0628360	Msa1323670	0.813996	1.929274e-51	-8.615850e-47
Msa0628360	Msa1332000	0.809973	1.452112e-50	-8.615850e-47
Msa0628360	Msa1346370	0.803990	2.678172e-49	-8.615850e-47
Msa0628360	Msa1423880	0.819635	1.046953e-52	-8.615850e-47
Msa0628360	Msa1430240	0.801468	8.876962e-49	-8.615850e-47
Msa0628360	Msa1437460	0.834044	3.762539e-56	-8.615850e-47
Msa0123100	Msa0628360	0.825802	3.842229e-54	-8.615850e-47
Msa0130570	Msa0628360	0.809080	2.258162e-50	-8.615850e-47
Msa0142200	Msa0628360	0.802013	6.861966e-49	-8.615850e-47
Msa0154320	Msa0628360	0.810293	1.238605e-50	-8.615850e-47
Msa0157290	Msa0628360	0.825253	5.185059e-54	-8.615850e-47
Msa0197930	Msa0628360	0.802188	6.315512e-49	-8.615850e-47
Msa0205840	Msa0628360	0.810076	1.379661e-50	-8.615850e-47
Msa0223690	Msa0628360	0.824181	9.278328e-54	-8.615850e-47
Msa0225320	Msa0628360	0.806455	8.160018e-50	-8.615850e-47
Msa0366240	Msa0628360	0.811679	6.204153e-51	-8.615850e-47
Msa0388960	Msa0628360	0.824798	6.640885e-54	-8.615850e-47
Msa0410650	Msa0628360	0.803858	2.851666e-49	-8.615850e-47
Msa0417270	Msa0628360	0.800457	1.428737e-48	-8.615850e-47
Msa0417880	Msa0628360	0.816640	4.982100e-52	-8.615850e-47
Msa0436880	Msa0628360	0.813919	2.005984e-51	-8.615850e-47
Msa0452920	Msa0628360	0.806550	7.789274e-50	-8.615850e-47
Msa0244860	Msa0628360	0.806934	6.461753e-50	-8.615850e-47
Msa0248970	Msa0628360	0.823398	1.414911e-53	-8.615850e-47
Msa0283450	Msa0628360	0.803299	3.725716e-49	-8.615850e-47
Msa0283520	Msa0628360	0.803036	4.223058e-49	-8.615850e-47
Msa0287310	Msa0628360	0.807087	5.998893e-50	-8.615850e-47
Msa0316810	Msa0628360	0.812599	3.908866e-51	-8.615850e-47
Msa0317280	Msa0628360	0.810011	1.425157e-50	-8.615850e-47
Msa0317730	Msa0628360	0.802911	4.480222e-49	-8.615850e-47
Msa0325850	Msa0628360	0.806111	9.639105e-50	-8.615850e-47
Msa0332000	Msa0628360	0.806008	1.013518e-49	-8.615850e-47
Msa0507680	Msa0628360	0.800843	1.191373e-48	-8.615850e-47
Msa0527550	Msa0628360	0.815549	8.732548e-52	-8.615850e-47
Msa0574890	Msa0628360	0.844518	7.194865e-59	-8.615850e-47
Msa0587940	Msa0628360	0.866208	3.372889e-65	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628360	MtrunA17_Chr4g0004181	99.438	178	1	0	1	178	1	178	2.50e-129	360
Msa0628360	MtrunA17_Chr1g0187961	49.123	171	74	5	6	166	11	178	7.57e-47	151
Msa0628360	MtrunA17_Chr1g0184801	46.597	191	73	4	6	167	12	202	2.61e-46	150
Msa0628360	MtrunA17_Chr1g0166011	44.505	182	78	4	8	167	3	183	9.57e-45	146
Msa0628360	MtrunA17_Chr7g0260621	46.524	187	70	5	11	167	16	202	1.65e-44	146
Msa0628360	MtrunA17_Chr1g0184791	42.411	224	63	9	11	172	18	237	2.43e-42	142
Msa0628360	MtrunA17_Chr6g0486121	40.336	238	73	9	2	172	11	246	1.79e-41	139
Msa0628360	MtrunA17_Chr1g0187921	41.304	230	75	7	1	172	1	228	2.45e-41	139
Msa0628360	MtrunA17_Chr5g0428141	47.853	163	54	5	37	172	181	339	4.52e-41	141
Msa0628360	MtrunA17_Chr1g0190711	40.343	233	71	7	6	172	15	245	1.77e-40	137
Msa0628360	MtrunA17_Chr5g0411501	49.669	151	44	5	52	172	179	327	1.94e-39	136
Msa0628360	MtrunA17_Chr2g0331411	49.669	151	44	4	52	172	170	318	4.90e-39	135
Msa0628360	MtrunA17_Chr8g0366881	47.305	167	54	6	35	172	179	340	1.24e-38	135
Msa0628360	MtrunA17_Chr8g0390281	48.667	150	46	3	52	172	138	285	1.75e-38	133
Msa0628360	MtrunA17_Chr7g0260641	47.297	148	49	4	52	172	97	242	4.20e-38	131
Msa0628360	MtrunA17_Chr2g0332141	46.789	109	47	3	76	173	8	116	6.76e-27	98.6
Msa0628360	MtrunA17_Chr1g0183251	31.771	192	67	3	49	176	77	268	3.87e-25	97.8
Msa0628360	MtrunA17_Chr2g0330951	31.034	174	66	3	47	168	89	260	8.49e-23	91.7
Msa0628360	MtrunA17_Chr8g0340731	32.335	167	68	3	47	168	100	266	2.42e-22	90.5
Msa0628360	MtrunA17_Chr1g0193861	47.423	97	46	3	73	166	82	176	2.35e-20	83.2
Msa0628360	MtrunA17_Chr4g0064131	33.824	136	63	4	44	159	77	205	1.40e-18	79.3
Msa0628360	MtrunA17_Chr4g0069561	38.596	114	62	4	52	159	69	180	4.35e-18	77.4
Msa0628360	MtrunA17_Chr7g0270851	42.105	95	52	2	73	165	67	160	3.51e-17	74.7
Msa0628360	MtrunA17_Chr3g0137601	30.286	175	89	6	4	159	46	206	4.00e-15	70.1
Msa0628360	MtrunA17_Chr1g0209181	33.613	119	69	2	53	161	52	170	8.43e-14	65.9
Msa0628360	MtrunA17_Chr4g0070181	33.010	103	65	2	66	168	986	1084	6.94e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628360	AT3G15540.1	60.309	194	55	5	1	172	1	194	5.02e-70	211
Msa0628360	AT1G52830.1	57.368	190	57	7	1	169	1	187	1.66e-62	191
Msa0628360	AT1G15580.1	57.143	175	53	7	1	165	1	163	5.87e-51	161
Msa0628360	AT5G43700.1	51.977	177	69	4	4	167	9	182	2.67e-48	155
Msa0628360	AT1G04240.1	48.913	184	74	4	4	167	3	186	3.61e-47	152
Msa0628360	AT1G04240.2	48.913	184	74	4	4	167	103	286	8.18e-47	155
Msa0628360	AT3G04730.1	42.358	229	68	8	6	172	2	228	9.87e-42	140
Msa0628360	AT3G23030.1	50.000	166	74	4	6	166	9	170	1.01e-40	135
Msa0628360	AT4G14550.2	42.784	194	76	6	3	167	30	217	4.10e-40	136
Msa0628360	AT3G23030.2	50.000	166	74	4	6	166	96	257	4.92e-40	136
Msa0628360	AT4G14550.1	42.211	199	78	7	3	172	30	220	7.37e-40	135
Msa0628360	AT1G04250.1	44.103	195	80	7	3	172	31	221	2.65e-39	134
Msa0628360	AT3G23050.1	39.827	231	73	8	6	172	6	234	2.39e-38	132
Msa0628360	AT4G29080.1	48.101	158	42	4	52	171	141	296	2.95e-38	133
Msa0628360	AT2G22670.5	48.630	146	45	4	52	167	163	308	7.12e-38	132
Msa0628360	AT2G22670.2	48.630	146	45	4	52	167	163	308	7.12e-38	132
Msa0628360	AT2G22670.3	48.322	149	45	5	52	170	163	309	4.00e-37	130
Msa0628360	AT2G22670.1	48.322	149	45	5	52	170	163	309	4.00e-37	130
Msa0628360	AT5G65670.1	49.333	150	47	4	52	172	181	330	4.68e-37	130
Msa0628360	AT2G22670.4	48.322	149	45	5	52	170	180	326	5.21e-37	130
Msa0628360	AT4G14560.1	48.765	162	77	4	5	163	6	164	8.51e-37	125
Msa0628360	AT5G65670.2	50.000	150	44	5	52	172	181	328	3.27e-36	128
Msa0628360	AT4G14550.3	38.953	172	70	6	3	145	30	195	3.36e-28	104
Msa0628360	AT4G28640.3	38.182	165	61	3	44	167	78	242	1.01e-27	104
Msa0628360	AT2G33310.3	38.125	160	56	5	51	167	72	231	1.96e-27	103
Msa0628360	AT2G33310.1	38.125	160	56	5	51	167	72	231	1.96e-27	103
Msa0628360	AT2G33310.2	37.126	167	62	5	44	167	66	232	2.06e-27	103
Msa0628360	AT4G28640.1	38.037	163	60	3	44	165	78	240	2.53e-27	103
Msa0628360	AT4G28640.2	38.037	163	60	3	44	165	78	240	7.25e-27	103
Msa0628360	AT3G23050.2	36.585	205	66	7	6	146	6	210	9.24e-27	101
Msa0628360	AT5G25890.1	34.483	174	89	6	12	171	8	170	2.15e-25	96.7
Msa0628360	AT1G04550.2	35.849	159	60	4	51	167	66	224	3.43e-23	92.4
Msa0628360	AT3G16500.1	36.709	158	57	5	47	162	96	252	5.85e-22	89.7
Msa0628360	AT3G16500.2	36.709	158	57	5	47	162	96	252	6.65e-22	89.7
Msa0628360	AT1G51950.1	34.194	155	54	4	55	162	97	250	1.12e-21	89.0
Msa0628360	AT3G17600.1	38.053	113	53	3	58	159	48	154	3.22e-21	85.5
Msa0628360	AT3G62100.1	32.895	152	83	3	11	159	33	168	3.99e-19	80.5
Msa0628360	AT2G46990.1	43.956	91	50	1	70	159	80	170	1.08e-18	79.3
Msa0628360	AT1G04100.1	31.765	170	62	4	52	167	91	260	2.50e-18	80.1
Msa0628360	AT2G01200.2	37.000	100	63	0	64	163	88	187	2.93e-15	70.5
Msa0628360	AT2G01200.1	37.000	100	63	0	64	163	88	187	2.93e-15	70.5
Msa0628360	AT1G15050.2	41.237	97	54	1	70	163	53	149	8.67e-15	68.6
Msa0628360	AT4G14550.4	37.097	124	57	4	3	111	30	147	1.08e-14	68.9
Msa0628360	AT1G15050.1	41.237	97	54	1	70	163	85	181	3.11e-14	67.8
Msa0628360	AT1G80390.1	37.383	107	55	3	11	109	19	121	3.30e-14	66.2
Msa0628360	AT2G46990.2	44.872	78	42	1	70	146	80	157	1.60e-13	65.1
Msa0628360	AT3G62100.2	43.750	80	40	2	70	146	78	155	2.06e-13	64.7
Msa0628360	AT3G23050.3	33.974	156	53	5	6	111	6	161	3.83e-13	64.3
Msa0628360	AT4G32280.2	36.471	85	50	1	75	159	118	198	2.49e-12	63.2
Msa0628360	AT4G32280.1	29.032	155	61	4	50	159	90	240	4.81e-12	62.8

Find 67 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTGAAGATGTAAGAAAATA+AGG	0.151157	4_3:+8939568	None:intergenic
ACCATCTTTGTCCTCATAAA+TGG	0.166743	4_3:+8936944	None:intergenic
AGATCAGATGCAAAGGGTTT+TGG	0.274758	4_3:-8935771	Msa0628360:CDS
CTCTTTGGTTGTTGTGGAAT+TGG	0.284623	4_3:-8939140	Msa0628360:intron
TTGGCTTTGGAGAAGCTCTT+TGG	0.296767	4_3:-8939155	Msa0628360:CDS
TTTATTTATGAAAGATATAT+AGG	0.311538	4_3:-8935530	Msa0628360:three_prime_UTR
AATCTCTTTAAAGATCCTTT+TGG	0.324461	4_3:+8935741	None:intergenic
CTTCATTCATGTTCTTCTTC+CGG	0.340312	4_3:+8939270	None:intergenic
GACGGTGGTGGGGAAGAAAA+TGG	0.343003	4_3:-8939359	Msa0628360:CDS
TTTAAAGAGATTCATATAGA+AGG	0.353790	4_3:-8935730	Msa0628360:exon
CTTGGAGTTAGCTTTGGCTT+TGG	0.358485	4_3:-8939168	Msa0628360:CDS
CTGAAGATGTAAGAAAATAA+GGG	0.366503	4_3:+8939569	None:intergenic
ATTGATCTTGGTTTGCATAA+GGG	0.379028	4_3:-8939194	Msa0628360:CDS
GATATATGAAATATGAATCT+AGG	0.380273	4_3:-8935577	Msa0628360:three_prime_UTR
GGGATACTTGGAGTTAGCTT+TGG	0.382944	4_3:-8939174	Msa0628360:CDS
TATATCAAACTATAGTATAA+AGG	0.393817	4_3:+8935594	None:intergenic
GATTGATCTTGGTTTGCATA+AGG	0.403002	4_3:-8939195	Msa0628360:CDS
TACTTGCGTAAGATTGATCT+TGG	0.425959	4_3:-8939206	Msa0628360:CDS
TTCTCCGAGATTGACGGTGG+TGG	0.434086	4_3:-8939371	Msa0628360:CDS
TGAACACGTTCCCATTTATG+AGG	0.437761	4_3:-8936955	Msa0628360:CDS
TGGTTTGCATAAGGGATACT+TGG	0.438915	4_3:-8939186	Msa0628360:CDS
GTTGACAGAGGAAGCGTTGA+AGG	0.440080	4_3:-8936991	Msa0628360:intron
TGCTGGTTGGAGATGTCCCT+TGG	0.448462	4_3:-8936914	Msa0628360:CDS
CCATCTTTGTCCTCATAAAT+GGG	0.453303	4_3:+8936945	None:intergenic
AAAATGGCAAGAGAAGGTTT+TGG	0.457566	4_3:-8939464	Msa0628360:CDS
GATGTAAGAAAATAAGGGCT+TGG	0.458413	4_3:+8939574	None:intergenic
TACATGAAGGTTAGCATGGA+TGG	0.465918	4_3:-8939236	Msa0628360:CDS
AGAGATTCATATAGAAGGCT+TGG	0.466045	4_3:-8935725	Msa0628360:exon
CCCATTTATGAGGACAAAGA+TGG	0.472932	4_3:-8936945	Msa0628360:CDS
GGGGAAGAAAATGGAGGTTC+CGG	0.474162	4_3:-8939350	Msa0628360:CDS
TGAAATAACCGAGCTAAGGT+TGG	0.475513	4_3:-8939438	Msa0628360:CDS
TTGAATCATGCAAGAGGCTG+AGG	0.476598	4_3:-8935803	Msa0628360:CDS
AGATCAATCTTACGCAAGTA+AGG	0.481985	4_3:+8939209	None:intergenic
TTCCCCACCACCGTCAATCT+CGG	0.483364	4_3:+8939367	None:intergenic
AGGGTTGGAATATTTGATGA+AGG	0.491208	4_3:+8939527	None:intergenic
GAAATAACCGAGCTAAGGTT+GGG	0.491688	4_3:-8939437	Msa0628360:CDS
CACAAAAGAATGAGAAGAAG+AGG	0.493979	4_3:-8939397	Msa0628360:CDS
GAGAAGCTCTTTGGTTGTTG+TGG	0.496959	4_3:-8939146	Msa0628360:CDS
TCAAGTTGTGGGATGGCCTC+CGG	0.501026	4_3:-8939303	Msa0628360:CDS
GGCCTCCGGTGTGTTCGTAC+CGG	0.521502	4_3:-8939289	Msa0628360:CDS
GAGAAGAAGAATCAAGTTGT+GGG	0.526986	4_3:-8939314	Msa0628360:CDS
AACTACTTCTCTTCAATCAA+AGG	0.529459	4_3:+8935448	None:intergenic
GACTTGAAATAACCGAGCTA+AGG	0.530961	4_3:-8939442	Msa0628360:CDS
GCTGGTTGGAGATGTCCCTT+GGG	0.536668	4_3:-8936913	Msa0628360:CDS
ATGAAGAGATCAGATGCAAA+GGG	0.538721	4_3:-8935777	Msa0628360:CDS
CGAGAAGAAGAATCAAGTTG+TGG	0.541598	4_3:-8939315	Msa0628360:CDS
AAAGTTAAAATGGCAAGAGA+AGG	0.543827	4_3:-8939470	Msa0628360:exon
TCTCCGAGATTGACGGTGGT+GGG	0.547621	4_3:-8939370	Msa0628360:CDS
AATGTACATGAAGGTTAGCA+TGG	0.548387	4_3:-8939240	Msa0628360:CDS
CAATCAAAGGAATTCACTCA+TGG	0.550670	4_3:+8935461	None:intergenic
CTCCGAGATTGACGGTGGTG+GGG	0.555531	4_3:-8939369	Msa0628360:CDS
CGGAAGAAGAACATGAATGA+AGG	0.561173	4_3:-8939269	Msa0628360:CDS
ATGAGGACAAAGATGGTGAC+TGG	0.580465	4_3:-8936938	Msa0628360:CDS
TATGAAGAGATCAGATGCAA+AGG	0.587250	4_3:-8935778	Msa0628360:CDS
CAAAGATGGTGACTGGATGC+TGG	0.588150	4_3:-8936931	Msa0628360:CDS
AGGATGTTCTCCGAGATTGA+CGG	0.605899	4_3:-8939377	Msa0628360:CDS
GATGGTGACTGGATGCTGGT+TGG	0.609564	4_3:-8936927	Msa0628360:CDS
AGAAGAATCAAGTTGTGGGA+TGG	0.612662	4_3:-8939310	Msa0628360:CDS
TGGCAAACCCAACCTTAGCT+CGG	0.615913	4_3:+8939430	None:intergenic
TGTTTATTGAATCATGCAAG+AGG	0.634299	4_3:-8935809	Msa0628360:CDS
CCAGAAGGACTTACTCCCAA+GGG	0.657435	4_3:+8936898	None:intergenic
GCCAGAAGGACTTACTCCCA+AGG	0.663285	4_3:+8936897	None:intergenic
TTCTTCCGGTACGAACACAC+CGG	0.663449	4_3:+8939284	None:intergenic
CTAAGGTTGGGTTTGCCATG+TGG	0.667720	4_3:-8939425	Msa0628360:CDS
ATGTTCTCCGAGATTGACGG+TGG	0.674253	4_3:-8939374	Msa0628360:CDS
TTCCGGTACGAACACACCGG+AGG	0.690475	4_3:+8939287	None:intergenic
GGTGGTGGGGAAGAAAATGG+AGG	0.722880	4_3:-8939356	Msa0628360:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTATATATATATATATATAT+AGG	-	chr4_3:8936016-8936035	Msa0628360:intron	0.0%
!!	ATTAATAATAATAATAATTA+AGG	+	chr4_3:8938942-8938961	None:intergenic	0.0%
!!!	CTAATATGAATTTTTAAAAA+CGG	-	chr4_3:8937065-8937084	Msa0628360:intron	10.0%
!!!	TAATATGAATTTTTAAAAAC+GGG	-	chr4_3:8937066-8937085	Msa0628360:intron	10.0%
!!!	AGAATCTTTAATTTTTATAA+AGG	-	chr4_3:8937381-8937400	Msa0628360:intron	10.0%
!!	CAACAAAAATATTAATTTAA+GGG	+	chr4_3:8937891-8937910	None:intergenic	10.0%
!!	TCAACAAAAATATTAATTTA+AGG	+	chr4_3:8937892-8937911	None:intergenic	10.0%
!!!	CTTTCTATTATTTATTTTTT+TGG	-	chr4_3:8938078-8938097	Msa0628360:intron	10.0%
!!!	AATAATTAAGGTATTTAATT+TGG	+	chr4_3:8938930-8938949	None:intergenic	10.0%
!!!	TGTCTTTTTAATATATTTTT+AGG	-	chr4_3:8939287-8939306	Msa0628360:CDS	10.0%
!!!	GTCTTTTTAATATATTTTTA+GGG	-	chr4_3:8939288-8939307	Msa0628360:CDS	10.0%
!!	TTTATTTATGAAAGATATAT+AGG	-	chr4_3:8939386-8939405	Msa0628360:CDS	10.0%
!!!	CCATTTTAACTTTTATTTTT+TGG	+	chr4_3:8935439-8935458	None:intergenic	15.0%
!!	CCAAAAAATAAAAGTTAAAA+TGG	-	chr4_3:8935436-8935455	Msa0628360:three_prime_UTR	15.0%
!!	ATATATAGTATACAATTTGA+AGG	+	chr4_3:8936108-8936127	None:intergenic	15.0%
!!!	AATTTTTTATTTGTCTTTTG+AGG	-	chr4_3:8936193-8936212	Msa0628360:intron	15.0%
!!	AATAATCGTAACTATAATAA+TGG	+	chr4_3:8936276-8936295	None:intergenic	15.0%
!!	AAACTCAATTAACATAATAT+AGG	+	chr4_3:8936677-8936696	None:intergenic	15.0%
!!!	CTTTTAGATGTATATTTTTT+AGG	+	chr4_3:8936746-8936765	None:intergenic	15.0%
!!	CTAAAAAATATACATCTAAA+AGG	-	chr4_3:8936744-8936763	Msa0628360:intron	15.0%
!!	TATATCAAACTATAGTATAA+AGG	+	chr4_3:8939325-8939344	None:intergenic	15.0%
!!!	ATTTTGAGATATTAAACTAT+TGG	+	chr4_3:8939538-8939557	None:intergenic	15.0%
!!!	GTTTTTTTTTCTTCTTCTTA+GGG	+	chr4_3:8935411-8935430	None:intergenic	20.0%
!!!	AGTTTTTTTTTCTTCTTCTT+AGG	+	chr4_3:8935412-8935431	None:intergenic	20.0%
!!	ATATGCATGCAAAATATTTA+GGG	-	chr4_3:8935903-8935922	Msa0628360:intron	20.0%
!!!	ACATATATTGCTTATGTTTT+TGG	+	chr4_3:8936771-8936790	None:intergenic	20.0%
!!	ACTAACTACTTTAGTATTAA+GGG	+	chr4_3:8936971-8936990	None:intergenic	20.0%
!!!	CTATCTATACTCTTATTTAT+TGG	+	chr4_3:8937017-8937036	None:intergenic	20.0%
!!	AAACTTATTAAAAATGGCAA+GGG	+	chr4_3:8937104-8937123	None:intergenic	20.0%
!!	AAAACTTATTAAAAATGGCA+AGG	+	chr4_3:8937105-8937124	None:intergenic	20.0%
!!	TGCTTTATATATGTTAGTTA+AGG	-	chr4_3:8937314-8937333	Msa0628360:intron	20.0%
!!	TTATTGTTATACATTCTACT+TGG	+	chr4_3:8937433-8937452	None:intergenic	20.0%
!!	CTTAATTATATGTCATTAAG+AGG	+	chr4_3:8937520-8937539	None:intergenic	20.0%
!!	TTCAAAAGAAAAAAGAAAGA+TGG	-	chr4_3:8937636-8937655	Msa0628360:intron	20.0%
!!	AAATGTTAAAATATGCTCTT+AGG	-	chr4_3:8937728-8937747	Msa0628360:intron	20.0%
!!!	TAATTAAAATTTGTTGACAG+AGG	-	chr4_3:8937913-8937932	Msa0628360:intron	20.0%
!!	ATGCTTTCTATTATTACATA+TGG	-	chr4_3:8938156-8938175	Msa0628360:intron	20.0%
!!!	TTTTTTTTAGTAATGACAGA+AGG	+	chr4_3:8938194-8938213	None:intergenic	20.0%
!!!	ACTTCGATAAAATTTTATGT+AGG	-	chr4_3:8938508-8938527	Msa0628360:intron	20.0%
!!!	GTGAAAATCAAATTCTTTTT+TGG	-	chr4_3:8938534-8938553	Msa0628360:intron	20.0%
!!!	TCTAAAATTTTGGTGTTTTA+AGG	-	chr4_3:8938857-8938876	Msa0628360:intron	20.0%
!!	AAACTACTATAGATTTAAAG+TGG	-	chr4_3:8939009-8939028	Msa0628360:intron	20.0%
!!!	TTTGTGTTGTTAAAAAAAAC+AGG	-	chr4_3:8939083-8939102	Msa0628360:intron	20.0%
!!	TTTAAAGAGATTCATATAGA+AGG	-	chr4_3:8939186-8939205	Msa0628360:CDS	20.0%
!!	GATATATGAAATATGAATCT+AGG	-	chr4_3:8939339-8939358	Msa0628360:CDS	20.0%
!	CTGAAGATGTAAGAAAATAA+GGG	+	chr4_3:8935350-8935369	None:intergenic	25.0%
!	TCTGAAGATGTAAGAAAATA+AGG	+	chr4_3:8935351-8935370	None:intergenic	25.0%
!	GATATGCATGCAAAATATTT+AGG	-	chr4_3:8935902-8935921	Msa0628360:intron	25.0%
!	ATTTAGTAGTTATGTGCTTT+CGG	-	chr4_3:8936052-8936071	Msa0628360:intron	25.0%
!!!	AGTTTTAAGAAAGAGGTTTT+GGG	+	chr4_3:8936085-8936104	None:intergenic	25.0%
!	TAAATTCTAGTATAGATGCA+AGG	-	chr4_3:8936155-8936174	Msa0628360:intron	25.0%
!	TCAACAAATAAACTTCTATC+TGG	+	chr4_3:8936445-8936464	None:intergenic	25.0%
!!	TCATTCTTTGTGATAGTTTT+TGG	+	chr4_3:8936518-8936537	None:intergenic	25.0%
!	ATTAGTTAAAGATTGCAATG+CGG	+	chr4_3:8936654-8936673	None:intergenic	25.0%
!!!	ATGTTTATTTTGGAAAGTCA+AGG	+	chr4_3:8936813-8936832	None:intergenic	25.0%
!	TTAAAAGATGTAGTATGAGA+CGG	+	chr4_3:8936869-8936888	None:intergenic	25.0%
!	CACTAACTACTTTAGTATTA+AGG	+	chr4_3:8936972-8936991	None:intergenic	25.0%
!	ATTCATATTAGATGCACTTT+AGG	+	chr4_3:8937056-8937075	None:intergenic	25.0%
!!!	TTTTTAAAAACGGGTTCAAA+TGG	-	chr4_3:8937075-8937094	Msa0628360:intron	25.0%
!	AACTTATTAAAAATGGCAAG+GGG	+	chr4_3:8937103-8937122	None:intergenic	25.0%
!	TATTAAAAGCAGTATGAATC+CGG	-	chr4_3:8937182-8937201	Msa0628360:intron	25.0%
!!	CGTTTAGAATATCAAAGAAA+TGG	+	chr4_3:8937224-8937243	None:intergenic	25.0%
!	AGATATTATAGTGCAACATA+AGG	-	chr4_3:8937351-8937370	Msa0628360:intron	25.0%
!	TTTATAAAGGTCCTAGAAAA+AGG	-	chr4_3:8937394-8937413	Msa0628360:intron	25.0%
!	TTATAAAGGTCCTAGAAAAA+GGG	-	chr4_3:8937395-8937414	Msa0628360:intron	25.0%
!!	CAGATAATCAAGTTTTTGAA+GGG	+	chr4_3:8937593-8937612	None:intergenic	25.0%
!!	ACAGATAATCAAGTTTTTGA+AGG	+	chr4_3:8937594-8937613	None:intergenic	25.0%
!	AATAGAATGAGCTAAGAAAT+GGG	+	chr4_3:8938044-8938063	None:intergenic	25.0%
!	AAATAGAATGAGCTAAGAAA+TGG	+	chr4_3:8938045-8938064	None:intergenic	25.0%
!!!	TATTTTTTTGGTACAAGAAG+AGG	-	chr4_3:8938090-8938109	Msa0628360:intron	25.0%
!!!	ATTTTTTTGGTACAAGAAGA+GGG	-	chr4_3:8938091-8938110	Msa0628360:intron	25.0%
!!!	TCGCTTAGTTTTTTTTTCTT+GGG	+	chr4_3:8938122-8938141	None:intergenic	25.0%
!!!	ATCGCTTAGTTTTTTTTTCT+TGG	+	chr4_3:8938123-8938142	None:intergenic	25.0%
!	AGTGATGCTAAAATTAAAGA+CGG	-	chr4_3:8938283-8938302	Msa0628360:intron	25.0%
!!	TAACTTTGATTTCATGCATA+TGG	-	chr4_3:8938401-8938420	Msa0628360:intron	25.0%
!	GTTGAAAACATTATGTGTTA+TGG	-	chr4_3:8938423-8938442	Msa0628360:intron	25.0%
!!	AATTTTATGTACACACACAT+TGG	-	chr4_3:8938564-8938583	Msa0628360:intron	25.0%
!	GTTCAACATATTATAAAGAG+GGG	+	chr4_3:8938615-8938634	None:intergenic	25.0%
!	GGTTCAACATATTATAAAGA+GGG	+	chr4_3:8938616-8938635	None:intergenic	25.0%
!	ATGGAAACATCAAAATAAAG+AGG	-	chr4_3:8938708-8938727	Msa0628360:intron	25.0%
!	TGGAAACATCAAAATAAAGA+GGG	-	chr4_3:8938709-8938728	Msa0628360:intron	25.0%
!	GAAAAAGTTCCTATATTTCA+TGG	+	chr4_3:8938767-8938786	None:intergenic	25.0%
!!	TACTATAGATTTAAAGTGGA+GGG	-	chr4_3:8939013-8939032	Msa0628360:intron	25.0%
!!!	AATCTCTTTAAAGATCCTTT+TGG	+	chr4_3:8939178-8939197	None:intergenic	25.0%
!!!	TTTTTTCTTCTTCTTAGGGT+TGG	+	chr4_3:8935407-8935426	None:intergenic	30.0%
	AAAGTTAAAATGGCAAGAGA+AGG	-	chr4_3:8935446-8935465	Msa0628360:three_prime_UTR	30.0%
	AGGTTCAAAAATGTACATGA+AGG	-	chr4_3:8935667-8935686	Msa0628360:three_prime_UTR	30.0%
!!	ATTGATCTTGGTTTGCATAA+GGG	-	chr4_3:8935722-8935741	Msa0628360:exon	30.0%
	TTTAGTAGTTATGTGCTTTC+GGG	-	chr4_3:8936053-8936072	Msa0628360:intron	30.0%
!!!	GAGTTTTAAGAAAGAGGTTT+TGG	+	chr4_3:8936086-8936105	None:intergenic	30.0%
!!!	TTGAAGGAGTTTTAAGAAAG+AGG	+	chr4_3:8936092-8936111	None:intergenic	30.0%
	GCATCTATACTAGAATTTAG+AGG	+	chr4_3:8936154-8936173	None:intergenic	30.0%
	TAAAAGATGTAGTATGAGAC+GGG	+	chr4_3:8936868-8936887	None:intergenic	30.0%
	TTGCACTATAATATCTACCT+GGG	+	chr4_3:8937347-8937366	None:intergenic	30.0%
	GGGCAAAAGGTAATAATAAT+AGG	-	chr4_3:8937676-8937695	Msa0628360:intron	30.0%
!	TGCTATAAGGACACATTTTA+GGG	+	chr4_3:8937865-8937884	None:intergenic	30.0%
!	ATGCTATAAGGACACATTTT+AGG	+	chr4_3:8937866-8937885	None:intergenic	30.0%
	AATTTAAGGGTCATGCTATA+AGG	+	chr4_3:8937878-8937897	None:intergenic	30.0%
	GTGATGCTAAAATTAAAGAC+GGG	-	chr4_3:8938284-8938303	Msa0628360:intron	30.0%
	AATCAAAGTTAGTAGTGCAT+AGG	+	chr4_3:8938392-8938411	None:intergenic	30.0%
	GGGTTCAACATATTATAAAG+AGG	+	chr4_3:8938617-8938636	None:intergenic	30.0%
	ATATGTTGAACCCATCAATT+AGG	-	chr4_3:8938624-8938643	Msa0628360:intron	30.0%
	ATTTCTCCTTCCTAATTGAT+GGG	+	chr4_3:8938637-8938656	None:intergenic	30.0%
	TATTTCTCCTTCCTAATTGA+TGG	+	chr4_3:8938638-8938657	None:intergenic	30.0%
	GGAGAAATAATCAAATGTCA+TGG	-	chr4_3:8938649-8938668	Msa0628360:intron	30.0%
	AAAGCCATTATTGTGTTAGA+TGG	-	chr4_3:8938689-8938708	Msa0628360:intron	30.0%
	GTTTCCATCTAACACAATAA+TGG	+	chr4_3:8938696-8938715	None:intergenic	30.0%
	GGAAACATCAAAATAAAGAG+GGG	-	chr4_3:8938710-8938729	Msa0628360:intron	30.0%
	GAAACATCAAAATAAAGAGG+GGG	-	chr4_3:8938711-8938730	Msa0628360:intron	30.0%
	AAACATCAAAATAAAGAGGG+GGG	-	chr4_3:8938712-8938731	Msa0628360:intron	30.0%
	TTTCATGGACATGTCATTAT+AGG	+	chr4_3:8938752-8938771	None:intergenic	30.0%
	ATGACATGTCCATGAAATAT+AGG	-	chr4_3:8938755-8938774	Msa0628360:intron	30.0%
!!!	CTCCATACGTTCTAAAATTT+TGG	-	chr4_3:8938847-8938866	Msa0628360:intron	30.0%
!!!	CACCAAAATTTTAGAACGTA+TGG	+	chr4_3:8938852-8938871	None:intergenic	30.0%
!	CTACTATAGATTTAAAGTGG+AGG	-	chr4_3:8939012-8939031	Msa0628360:intron	30.0%
	TGTTTATTGAATCATGCAAG+AGG	-	chr4_3:8939107-8939126	Msa0628360:intron	30.0%
	AACTACTTCTCTTCAATCAA+AGG	+	chr4_3:8939471-8939490	None:intergenic	30.0%
!	TGAAGAGAAGTAGTTTTTGT+TGG	-	chr4_3:8939476-8939495	Msa0628360:exon	30.0%
	AGGGTTGGAATATTTGATGA+AGG	+	chr4_3:8935392-8935411	None:intergenic	35.0%
!	AAAATGGCAAGAGAAGGTTT+TGG	-	chr4_3:8935452-8935471	Msa0628360:three_prime_UTR	35.0%
!	CTCTTCTTCTCATTCTTTTG+TGG	+	chr4_3:8935521-8935540	None:intergenic	35.0%
	CACAAAAGAATGAGAAGAAG+AGG	-	chr4_3:8935519-8935538	Msa0628360:three_prime_UTR	35.0%
!	GATTCTTCTTCTCGATTTTC+TGG	+	chr4_3:8935595-8935614	None:intergenic	35.0%
!	GAGAAGAAGAATCAAGTTGT+GGG	-	chr4_3:8935602-8935621	Msa0628360:three_prime_UTR	35.0%
	CTTCATTCATGTTCTTCTTC+CGG	+	chr4_3:8935649-8935668	None:intergenic	35.0%
	AATGTACATGAAGGTTAGCA+TGG	-	chr4_3:8935676-8935695	Msa0628360:three_prime_UTR	35.0%
	AGATCAATCTTACGCAAGTA+AGG	+	chr4_3:8935710-8935729	None:intergenic	35.0%
	TACTTGCGTAAGATTGATCT+TGG	-	chr4_3:8935710-8935729	Msa0628360:three_prime_UTR	35.0%
!!	GATTGATCTTGGTTTGCATA+AGG	-	chr4_3:8935721-8935740	Msa0628360:exon	35.0%
	TCTTTCGATGCTATAGCTAT+AGG	-	chr4_3:8935861-8935880	Msa0628360:intron	35.0%
	CTTTCGATGCTATAGCTATA+GGG	-	chr4_3:8935862-8935881	Msa0628360:intron	35.0%
	AGTCAAGGTTGAAGCTATAT+TGG	+	chr4_3:8936798-8936817	None:intergenic	35.0%
!	TGCTGTGCACATGTTTATTT+TGG	+	chr4_3:8936823-8936842	None:intergenic	35.0%
	AAAAGATGTAGTATGAGACG+GGG	+	chr4_3:8936867-8936886	None:intergenic	35.0%
!	AAGAAATGGACTTGCTTACA+AGG	+	chr4_3:8937210-8937229	None:intergenic	35.0%
!!!	AGCATCATATCCTGTTTTTG+AGG	+	chr4_3:8937298-8937317	None:intergenic	35.0%
!!	TTAGTTAAGGTATTGATCCC+AGG	-	chr4_3:8937327-8937346	Msa0628360:intron	35.0%
	GTTGCACTATAATATCTACC+TGG	+	chr4_3:8937348-8937367	None:intergenic	35.0%
	TCCTAGAAAAAGGGTAAAGT+GGG	-	chr4_3:8937404-8937423	Msa0628360:intron	35.0%
	ACATTCTCCTCATTATGTGA+TGG	-	chr4_3:8937457-8937476	Msa0628360:intron	35.0%
!	ATTACCTTTTGCCCTTTTGT+GGG	+	chr4_3:8937670-8937689	None:intergenic	35.0%
!	TATTACCTTTTGCCCTTTTG+TGG	+	chr4_3:8937671-8937690	None:intergenic	35.0%
	CCATCTTTGTCCTCATAAAT+GGG	+	chr4_3:8937974-8937993	None:intergenic	35.0%
	ACCATCTTTGTCCTCATAAA+TGG	+	chr4_3:8937975-8937994	None:intergenic	35.0%
	TATGAAGAGATCAGATGCAA+AGG	-	chr4_3:8939138-8939157	Msa0628360:intron	35.0%
	ATGAAGAGATCAGATGCAAA+GGG	-	chr4_3:8939139-8939158	Msa0628360:intron	35.0%
	AGAGATTCATATAGAAGGCT+TGG	-	chr4_3:8939191-8939210	Msa0628360:CDS	35.0%
	CAATCAAAGGAATTCACTCA+TGG	+	chr4_3:8939458-8939477	None:intergenic	35.0%
!!	ACATATATTTTGAACGGAGG+AGG	+	chr4_3:8939571-8939590	None:intergenic	35.0%
	GACTTGAAATAACCGAGCTA+AGG	-	chr4_3:8935474-8935493	Msa0628360:three_prime_UTR	40.0%
	TGAAATAACCGAGCTAAGGT+TGG	-	chr4_3:8935478-8935497	Msa0628360:three_prime_UTR	40.0%
	GAAATAACCGAGCTAAGGTT+GGG	-	chr4_3:8935479-8935498	Msa0628360:three_prime_UTR	40.0%
!	CGAGAAGAAGAATCAAGTTG+TGG	-	chr4_3:8935601-8935620	Msa0628360:three_prime_UTR	40.0%
!	AGAAGAATCAAGTTGTGGGA+TGG	-	chr4_3:8935606-8935625	Msa0628360:three_prime_UTR	40.0%
	CGGAAGAAGAACATGAATGA+AGG	-	chr4_3:8935647-8935666	Msa0628360:three_prime_UTR	40.0%
	TACATGAAGGTTAGCATGGA+TGG	-	chr4_3:8935680-8935699	Msa0628360:three_prime_UTR	40.0%
!	TGGTTTGCATAAGGGATACT+TGG	-	chr4_3:8935730-8935749	Msa0628360:exon	40.0%
	CTCTTTGGTTGTTGTGGAAT+TGG	-	chr4_3:8935776-8935795	Msa0628360:CDS	40.0%
	TGCTTGTGCGTTCAAATTCA+TGG	-	chr4_3:8936323-8936342	Msa0628360:intron	40.0%
	ATTTAGAGACCTGAGTGTGA+GGG	+	chr4_3:8936624-8936643	None:intergenic	40.0%
	AATTTAGAGACCTGAGTGTG+AGG	+	chr4_3:8936625-8936644	None:intergenic	40.0%
	TAAACATGTGCACAGCATAG+TGG	-	chr4_3:8936826-8936845	Msa0628360:intron	40.0%
	ACTCGACAAACCTCAAAAAC+AGG	-	chr4_3:8937285-8937304	Msa0628360:intron	40.0%
	GTCCTAGAAAAAGGGTAAAG+TGG	-	chr4_3:8937403-8937422	Msa0628360:intron	40.0%
!	TCCCACTTTACCCTTTTTCT+AGG	+	chr4_3:8937408-8937427	None:intergenic	40.0%
	TTCTCCTCATTATGTGATGG+TGG	-	chr4_3:8937460-8937479	Msa0628360:intron	40.0%
!	TTACCTTTTGCCCTTTTGTG+GGG	+	chr4_3:8937669-8937688	None:intergenic	40.0%
	TGAACACGTTCCCATTTATG+AGG	-	chr4_3:8937961-8937980	Msa0628360:intron	40.0%
	CCCATTTATGAGGACAAAGA+TGG	-	chr4_3:8937971-8937990	Msa0628360:intron	40.0%
	GTTGAACCCATCAATTAGGA+AGG	-	chr4_3:8938628-8938647	Msa0628360:intron	40.0%
!!	TAATGGCTTTGCCTTTTCCA+TGG	+	chr4_3:8938679-8938698	None:intergenic	40.0%
!	AGATCAGATGCAAAGGGTTT+TGG	-	chr4_3:8939145-8939164	Msa0628360:CDS	40.0%
!!!	GGTTTTGGTTTGCAACCAAA+AGG	-	chr4_3:8939160-8939179	Msa0628360:CDS	40.0%
!!	GCGACATATATTTTGAACGG+AGG	+	chr4_3:8939574-8939593	None:intergenic	40.0%
!	TTCTTTTGTGGCTCACCACA+TGG	+	chr4_3:8935509-8935528	None:intergenic	45.0%
	AGGATGTTCTCCGAGATTGA+CGG	-	chr4_3:8935539-8935558	Msa0628360:three_prime_UTR	45.0%
!!	CTTCTCGATTTTCTGGTCAC+CGG	+	chr4_3:8935588-8935607	None:intergenic	45.0%
!	GGGATACTTGGAGTTAGCTT+TGG	-	chr4_3:8935742-8935761	Msa0628360:CDS	45.0%
!!	CTTGGAGTTAGCTTTGGCTT+TGG	-	chr4_3:8935748-8935767	Msa0628360:CDS	45.0%
!!	TTGGCTTTGGAGAAGCTCTT+TGG	-	chr4_3:8935761-8935780	Msa0628360:CDS	45.0%
	GAGAAGCTCTTTGGTTGTTG+TGG	-	chr4_3:8935770-8935789	Msa0628360:CDS	45.0%
!	CAGCGTCTCTCACATTGATT+AGG	+	chr4_3:8936580-8936599	None:intergenic	45.0%
	GTGAGGGTGGATATTGAAGT+TGG	+	chr4_3:8936608-8936627	None:intergenic	45.0%
!	TGGACTTGCTTACAAGGTTC+CGG	+	chr4_3:8937204-8937223	None:intergenic	45.0%
	ATGGAACCAAACCCCACAAA+AGG	-	chr4_3:8937655-8937674	Msa0628360:intron	45.0%
	TGGAACCAAACCCCACAAAA+GGG	-	chr4_3:8937656-8937675	Msa0628360:intron	45.0%
!	TTTTGCCCTTTTGTGGGGTT+TGG	+	chr4_3:8937664-8937683	None:intergenic	45.0%
	AAACCCCACAAAAGGGCAAA+AGG	-	chr4_3:8937663-8937682	Msa0628360:intron	45.0%
	ATGAGGACAAAGATGGTGAC+TGG	-	chr4_3:8937978-8937997	Msa0628360:intron	45.0%
!	TTCACGCATGTCGGTTACTT+GGG	+	chr4_3:8938592-8938611	None:intergenic	45.0%
	TCAAATGTCATGGCCTACCA+TGG	-	chr4_3:8938659-8938678	Msa0628360:intron	45.0%
	TTGAATCATGCAAGAGGCTG+AGG	-	chr4_3:8939113-8939132	Msa0628360:intron	45.0%
!!	TTATTAAAACTTATTAAAAA+TGG	+	chr4_3:8937110-8937129	None:intergenic	5.0%
!!	AGATAAAAAAAATATAAAAT+TGG	-	chr4_3:8938239-8938258	Msa0628360:intron	5.0%
!!!	ATTAAGAAATAAATAAATTT+TGG	-	chr4_3:8938800-8938819	Msa0628360:intron	5.0%
	TGGCAAACCCAACCTTAGCT+CGG	+	chr4_3:8935489-8935508	None:intergenic	50.0%
	CTAAGGTTGGGTTTGCCATG+TGG	-	chr4_3:8935491-8935510	Msa0628360:three_prime_UTR	50.0%
	ATGTTCTCCGAGATTGACGG+TGG	-	chr4_3:8935542-8935561	Msa0628360:three_prime_UTR	50.0%
	GGGGAAGAAAATGGAGGTTC+CGG	-	chr4_3:8935566-8935585	Msa0628360:three_prime_UTR	50.0%
	TTCTTCCGGTACGAACACAC+CGG	+	chr4_3:8935635-8935654	None:intergenic	50.0%
	CAATATCCACCCTCACACTC+AGG	-	chr4_3:8936612-8936631	Msa0628360:intron	50.0%
	CACGCCACCATCACATAATG+AGG	+	chr4_3:8937467-8937486	None:intergenic	50.0%
!!	GTTGACAGAGGAAGCGTTGA+AGG	-	chr4_3:8937925-8937944	Msa0628360:intron	50.0%
	CAAAGATGGTGACTGGATGC+TGG	-	chr4_3:8937985-8938004	Msa0628360:intron	50.0%
	CCAGAAGGACTTACTCCCAA+GGG	+	chr4_3:8938021-8938040	None:intergenic	50.0%
	GAGCTAAGAAATGGGCCAGA+AGG	+	chr4_3:8938036-8938055	None:intergenic	50.0%
!	TCACGCATGTCGGTTACTTG+GGG	+	chr4_3:8938591-8938610	None:intergenic	50.0%
!	GTTCACGCATGTCGGTTACT+TGG	+	chr4_3:8938593-8938612	None:intergenic	50.0%
	AAAGAGGGGTTCACGCATGT+CGG	+	chr4_3:8938601-8938620	None:intergenic	50.0%
	GTCATGGCCTACCATGGAAA+AGG	-	chr4_3:8938665-8938684	Msa0628360:intron	50.0%
!	GGCTTTGCCTTTTCCATGGT+AGG	+	chr4_3:8938675-8938694	None:intergenic	50.0%
	TTCTCCGAGATTGACGGTGG+TGG	-	chr4_3:8935545-8935564	Msa0628360:three_prime_UTR	55.0%
	TCTCCGAGATTGACGGTGGT+GGG	-	chr4_3:8935546-8935565	Msa0628360:three_prime_UTR	55.0%
	TTCCCCACCACCGTCAATCT+CGG	+	chr4_3:8935552-8935571	None:intergenic	55.0%
!!	GACGGTGGTGGGGAAGAAAA+TGG	-	chr4_3:8935557-8935576	Msa0628360:three_prime_UTR	55.0%
!!	GGTGGTGGGGAAGAAAATGG+AGG	-	chr4_3:8935560-8935579	Msa0628360:three_prime_UTR	55.0%
!	TCAAGTTGTGGGATGGCCTC+CGG	-	chr4_3:8935613-8935632	Msa0628360:three_prime_UTR	55.0%
	TAGAGACCTGAGTGTGAGGG+TGG	+	chr4_3:8936621-8936640	None:intergenic	55.0%
	GATGGTGACTGGATGCTGGT+TGG	-	chr4_3:8937989-8938008	Msa0628360:intron	55.0%
!	TGCTGGTTGGAGATGTCCCT+TGG	-	chr4_3:8938002-8938021	Msa0628360:intron	55.0%
	GCTGGTTGGAGATGTCCCTT+GGG	-	chr4_3:8938003-8938022	Msa0628360:intron	55.0%
	CCCTTGGGAGTAAGTCCTTC+TGG	-	chr4_3:8938018-8938037	Msa0628360:intron	55.0%
	GCCAGAAGGACTTACTCCCA+AGG	+	chr4_3:8938022-8938041	None:intergenic	55.0%
	CTCCGAGATTGACGGTGGTG+GGG	-	chr4_3:8935547-8935566	Msa0628360:three_prime_UTR	60.0%
	TTCCGGTACGAACACACCGG+AGG	+	chr4_3:8935632-8935651	None:intergenic	60.0%
	GGCCTCCGGTGTGTTCGTAC+CGG	-	chr4_3:8935627-8935646	Msa0628360:three_prime_UTR	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	8935343	8939595	8935343	ID=Msa0628360;Name=Msa0628360
chr4_3	mRNA	8935343	8939595	8935343	ID=Msa0628360-mRNA-1;Parent=Msa0628360;Name=Msa0628360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=112\|1\|1\|1\|1\|1\|3\|391\|178
chr4_3	exon	8935343	8935833	8935343	ID=Msa0628360-mRNA-1:exon:2636;Parent=Msa0628360-mRNA-1
chr4_3	exon	8936912	8937005	8936912	ID=Msa0628360-mRNA-1:exon:2635;Parent=Msa0628360-mRNA-1
chr4_3	exon	8939141	8939595	8939141	ID=Msa0628360-mRNA-1:exon:2634;Parent=Msa0628360-mRNA-1
chr4_3	five_prime_UTR	8939484	8939595	8939484	ID=Msa0628360-mRNA-1:five_prime_utr;Parent=Msa0628360-mRNA-1
chr4_3	CDS	8939141	8939483	8939141	ID=Msa0628360-mRNA-1:cds;Parent=Msa0628360-mRNA-1
chr4_3	CDS	8936912	8937005	8936912	ID=Msa0628360-mRNA-1:cds;Parent=Msa0628360-mRNA-1
chr4_3	CDS	8935734	8935833	8935734	ID=Msa0628360-mRNA-1:cds;Parent=Msa0628360-mRNA-1
chr4_3	three_prime_UTR	8935343	8935733	8935343	ID=Msa0628360-mRNA-1:three_prime_utr;Parent=Msa0628360-mRNA-1

Gene Sequence

>Msa0628360

ATGGCAAGAGAAGGTTTTGGACTTGAAATAACCGAGCTAAGGTTGGGTTTGCCATGTGGTGAGCCACAAAAGAATGAGAAGAAGAGGATGTTCTCCGAGATTGACGGTGGTGGGGAAGAAAATGGAGGTTCCGGTGACCAGAAAATCGAGAAGAAGAATCAAGTTGTGGGATGGCCTCCGGTGTGTTCGTACCGGAAGAAGAACATGAATGAAGGTTCAAAAATGTACATGAAGGTTAGCATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAGTTAGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTGGAATTGAGGAAGCGTTGAAGGATGCAGACAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAATCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGTTTTGGTTTGCAACCAAAAGGATCTTTAAAGAGATTCATATAG

Protein sequence

>Msa0628360

MAREGFGLEITELRLGLPCGEPQKNEKKRMFSEIDGGGEENGGSGDQKIEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCGIEEALKDADNCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI*