AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0895420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895420 MtrunA17_Chr6g0479311 97.131 488 14 0 1 488 1 488 0.0 973
Msa0895420 MtrunA17_Chr6g0479311 97.436 39 1 0 552 590 489 527 3.04e-15 79.0
Msa0895420 MtrunA17_Chr8g0340881 33.725 510 310 13 4 488 9 515 2.13e-72 249
Msa0895420 MtrunA17_Chr8g0340931 31.677 483 304 13 4 464 3 481 1.64e-66 232
Msa0895420 MtrunA17_Chr8g0340871 32.704 477 301 13 4 464 14 486 1.97e-66 232
Msa0895420 MtrunA17_Chr8g0341151 30.992 484 305 12 1 464 2 476 1.65e-65 229
Msa0895420 MtrunA17_Chr8g0341231 33.117 462 280 14 26 464 51 506 4.97e-65 223
Msa0895420 MtrunA17_Chr8g0341061 34.167 480 267 17 26 464 60 531 2.61e-64 224
Msa0895420 MtrunA17_Chr8g0340941 32.365 482 302 13 1 464 1 476 2.97e-64 220
Msa0895420 MtrunA17_Chr8g0340911 32.505 483 300 12 1 464 6 481 5.23e-64 225
Msa0895420 MtrunA17_Chr8g0347661 30.165 484 317 11 1 464 6 488 9.65e-63 222
Msa0895420 MtrunA17_Chr8g0341011 32.671 453 287 11 26 464 34 482 2.52e-62 221
Msa0895420 MtrunA17_Chr8g0341091 31.590 497 291 16 26 477 56 548 1.71e-60 212
Msa0895420 MtrunA17_Chr6g0487571 30.799 513 320 16 7 495 8 509 2.95e-60 215
Msa0895420 MtrunA17_Chr1g0205741 31.967 488 274 18 29 473 28 500 1.81e-59 206
Msa0895420 MtrunA17_Chr2g0330591 30.672 476 302 15 7 462 10 477 5.36e-59 211
Msa0895420 MtrunA17_Chr8g0340891 30.658 486 304 15 1 464 6 480 4.27e-58 209
Msa0895420 MtrunA17_Chr7g0263591 31.250 480 292 19 26 477 33 502 1.38e-56 205
Msa0895420 MtrunA17_Chr8g0341101 31.303 476 284 13 26 461 59 531 7.77e-56 203
Msa0895420 MtrunA17_Chr8g0358831 29.730 481 265 16 3 464 22 448 3.99e-52 191
Msa0895420 MtrunA17_Chr8g0341141 28.866 485 298 14 1 464 1 459 1.27e-50 182
Msa0895420 MtrunA17_Chr1g0181731 28.631 482 304 18 26 477 27 498 2.22e-49 184
Msa0895420 MtrunA17_Chr3g0123141 28.402 507 295 21 16 466 15 509 2.15e-46 175
Msa0895420 MtrunA17_Chr6g0487561 32.123 358 218 14 4 342 17 368 1.90e-40 151
Msa0895420 MtrunA17_Chr8g0341351 31.176 340 222 9 26 354 44 382 3.62e-38 145
Msa0895420 MtrunA17_Chr7g0236881 27.857 560 313 21 7 502 10 542 4.66e-36 144
Msa0895420 MtrunA17_Chr8g0341271 31.596 307 180 8 63 354 3 294 1.80e-34 132
Msa0895420 MtrunA17_Chr8g0341111 39.877 163 89 4 324 477 245 407 1.13e-28 121
Msa0895420 MtrunA17_Chr8g0341111 33.721 172 92 7 26 183 56 219 1.74e-17 86.3
Msa0895420 MtrunA17_Chr2g0282601 28.352 522 308 24 4 478 6 508 5.93e-28 118
Msa0895420 MtrunA17_Chr8g0340961 29.412 357 211 12 1 340 1 333 1.02e-27 114
Msa0895420 MtrunA17_Chr4g0044931 37.912 182 102 6 29 200 7 187 1.51e-27 110
Msa0895420 MtrunA17_Chr5g0411631 23.493 481 305 17 1 459 10 449 2.56e-24 108
Msa0895420 MtrunA17_Chr5g0423871 37.931 145 88 2 322 464 14 158 1.29e-22 95.9
Msa0895420 MtrunA17_Chr5g0423881 28.994 338 213 15 27 342 64 396 1.73e-22 100
Msa0895420 MtrunA17_Chr4g0044941 26.354 277 174 6 196 446 9 281 3.49e-18 85.1
Msa0895420 MtrunA17_Chr1g0198681 26.489 487 289 25 29 467 40 505 3.67e-18 88.2
Msa0895420 MtrunA17_Chr2g0330611 32.203 177 109 6 7 173 10 185 5.73e-18 83.6
Msa0895420 MtrunA17_Chr5g0422481 24.478 527 298 22 9 477 17 501 5.98e-18 87.8
Msa0895420 MtrunA17_Chr8g0341261 33.594 128 67 3 355 464 19 146 2.99e-17 79.7
Msa0895420 MtrunA17_Chr2g0330621 26.531 196 132 6 234 423 14 203 1.22e-16 79.0
Msa0895420 MtrunA17_Chr8g0341201 41.322 121 64 4 93 210 24 140 3.11e-16 77.0
Msa0895420 MtrunA17_Chr1g0165161 36.301 146 79 6 343 478 19 160 1.93e-15 75.1
Msa0895420 MtrunA17_Chr7g0220741 34.450 209 113 10 354 549 36 233 7.22e-14 74.7
Msa0895420 MtrunA17_Chr1g0165281 35.099 151 81 7 339 477 52 197 3.10e-13 73.2
Msa0895420 MtrunA17_Chr1g0165241 35.099 151 81 7 339 477 52 197 3.10e-13 73.2
Msa0895420 MtrunA17_Chr1g0165311 35.099 151 81 7 339 477 52 197 3.10e-13 73.2
Msa0895420 MtrunA17_Chr4g0073471 39.583 144 68 7 346 477 19 155 2.51e-12 69.7
Msa0895420 MtrunA17_Chr1g0165271 29.082 196 119 7 339 523 21 207 2.89e-12 68.9
Msa0895420 MtrunA17_Chr1g0165921 36.806 144 75 7 339 472 10 147 5.33e-12 68.9
Msa0895420 MtrunA17_Chr1g0165231 29.231 195 118 7 339 522 21 206 7.18e-12 68.6
Msa0895420 MtrunA17_Chr1g0165301 29.231 195 118 7 339 522 21 206 7.18e-12 68.6
Msa0895420 MtrunA17_Chr5g0413291 41.463 123 59 5 367 483 51 166 8.45e-12 68.2
Msa0895420 MtrunA17_Chr1g0165191 33.333 135 74 6 339 463 19 147 1.35e-11 67.8
Msa0895420 MtrunA17_Chr1g0165211 33.113 151 83 6 339 478 17 160 1.47e-11 67.8
Msa0895420 MtrunA17_Chr1g0165881 36.567 134 70 7 354 477 38 166 1.65e-11 64.3
Msa0895420 MtrunA17_Chr2g0334251 33.333 153 88 5 316 458 3 151 2.42e-11 66.6
Msa0895420 MtrunA17_Chr1g0165971 30.102 196 118 8 339 522 19 207 3.46e-11 66.6
Msa0895420 MtrunA17_Chr7g0217101 44.706 85 44 2 396 477 20 104 3.47e-11 65.9
Msa0895420 MtrunA17_Chr8g0345471 34.722 144 72 8 329 461 2 134 4.74e-11 65.9
Msa0895420 MtrunA17_Chr7g0222841 32.680 153 65 6 343 463 29 175 5.78e-11 62.8
Msa0895420 MtrunA17_Chr1g0165221 34.437 151 83 8 339 478 20 165 5.91e-11 65.9
Msa0895420 MtrunA17_Chr1g0165951 35.099 151 80 7 339 477 15 159 8.38e-11 65.1
Msa0895420 MtrunA17_Chr5g0396941 38.000 100 56 4 382 477 58 155 8.95e-11 64.7
Msa0895420 MtrunA17_Chr5g0418721 35.156 128 71 6 340 458 17 141 9.98e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895420 AT3G46280.1 36.827 353 199 9 9 344 5 350 2.49e-64 219
Msa0895420 AT5G59680.1 32.976 467 277 19 26 467 29 484 1.02e-63 225
Msa0895420 AT4G29990.2 32.780 482 296 17 4 464 6 480 1.16e-63 223
Msa0895420 AT1G51800.1 32.292 480 300 17 4 465 8 480 5.78e-63 223
Msa0895420 AT4G29990.1 32.780 482 296 17 4 464 6 480 7.21e-63 223
Msa0895420 AT3G19230.1 33.966 474 272 13 29 465 25 494 1.57e-62 215
Msa0895420 AT5G59670.2 33.548 465 278 16 26 467 28 484 7.80e-61 217
Msa0895420 AT5G59670.1 33.548 465 278 16 26 467 28 484 7.80e-61 217
Msa0895420 AT2G19210.1 31.365 491 301 17 3 466 8 489 1.98e-59 213
Msa0895420 AT1G24485.4 36.599 347 203 9 3 342 10 346 2.36e-59 204
Msa0895420 AT1G24485.1 36.599 347 203 9 3 342 10 346 2.47e-59 205
Msa0895420 AT3G46270.1 34.085 355 213 8 4 344 9 356 2.66e-59 205
Msa0895420 AT3G46270.2 34.085 355 213 8 4 344 17 364 4.05e-59 205
Msa0895420 AT3G05990.1 31.006 487 287 16 29 473 30 509 5.07e-59 206
Msa0895420 AT1G24485.2 36.599 347 203 9 3 342 10 346 5.30e-59 205
Msa0895420 AT2G29000.1 30.672 476 304 14 26 481 30 499 1.98e-58 210
Msa0895420 AT1G05700.1 30.882 476 303 14 6 464 14 480 2.61e-58 209
Msa0895420 AT1G05700.2 30.882 476 303 14 6 464 14 480 6.93e-58 209
Msa0895420 AT1G24485.3 36.599 347 203 9 3 342 10 346 1.41e-57 203
Msa0895420 AT3G46400.1 31.115 511 314 16 1 482 1 502 3.60e-57 207
Msa0895420 AT3G21340.2 31.808 459 289 14 26 465 33 486 4.02e-57 204
Msa0895420 AT1G51790.3 30.769 481 306 15 5 464 9 483 4.69e-57 206
Msa0895420 AT1G51790.1 30.769 481 306 15 5 464 9 483 4.69e-57 206
Msa0895420 AT5G59650.1 31.933 476 294 16 26 477 29 498 6.70e-57 206
Msa0895420 AT1G51790.2 30.769 481 306 15 5 464 9 483 7.51e-57 206
Msa0895420 AT3G21340.1 31.808 459 289 14 26 465 33 486 3.49e-56 204
Msa0895420 AT3G46340.1 29.622 503 320 16 3 477 6 502 4.40e-56 204
Msa0895420 AT1G07550.1 29.957 464 295 16 26 467 29 484 4.94e-56 203
Msa0895420 AT3G46420.1 31.081 518 312 17 1 484 1 507 6.25e-56 202
Msa0895420 AT2G19230.2 30.247 486 305 16 4 464 9 485 9.12e-56 202
Msa0895420 AT4G20450.2 31.014 503 294 18 5 463 7 500 9.99e-56 202
Msa0895420 AT2G19190.1 31.288 489 299 16 1 461 3 482 1.14e-55 202
Msa0895420 AT4G20450.1 31.014 503 294 18 5 463 7 500 1.81e-55 202
Msa0895420 AT2G19230.1 30.247 486 305 16 4 464 9 485 2.20e-55 202
Msa0895420 AT5G16900.2 29.341 501 311 18 26 493 24 514 2.46e-55 198
Msa0895420 AT2G14440.1 28.807 486 319 14 2 465 4 484 5.65e-55 200
Msa0895420 AT5G16900.1 29.341 501 311 18 26 493 24 514 2.66e-54 198
Msa0895420 AT5G16900.3 29.341 501 311 18 26 493 24 514 2.66e-54 198
Msa0895420 AT1G51860.1 30.737 475 299 16 1 451 1 469 2.78e-54 198
Msa0895420 AT2G28960.2 30.515 485 306 18 2 465 6 480 8.78e-54 197
Msa0895420 AT3G46330.1 29.806 463 297 14 26 467 31 486 1.53e-53 196
Msa0895420 AT2G14510.1 28.657 499 306 17 1 465 1 483 3.16e-53 195
Msa0895420 AT2G14510.2 28.657 499 306 17 1 465 9 491 3.24e-53 195
Msa0895420 AT5G59650.2 31.198 484 295 17 26 477 29 506 3.64e-53 195
Msa0895420 AT3G46260.1 34.821 336 193 10 27 344 29 356 1.41e-52 186
Msa0895420 AT2G28990.2 30.652 460 296 14 26 467 25 479 2.03e-52 193
Msa0895420 AT2G28990.1 30.652 460 296 14 26 467 25 479 2.03e-52 193
Msa0895420 AT2G37050.2 30.339 501 283 18 26 472 28 516 2.26e-52 191
Msa0895420 AT2G37050.4 30.120 498 288 17 26 472 28 516 2.54e-52 191
Msa0895420 AT2G04300.2 29.842 506 313 15 4 477 9 504 3.18e-52 192
Msa0895420 AT1G51880.1 30.000 490 309 16 1 464 1 482 3.67e-52 192
Msa0895420 AT1G51880.2 30.000 490 309 16 1 464 19 500 4.27e-52 192
Msa0895420 AT1G51805.1 29.565 460 294 16 26 465 26 475 1.30e-51 191
Msa0895420 AT1G51850.2 29.694 458 295 13 26 465 26 474 1.68e-51 190
Msa0895420 AT2G37050.3 30.561 517 285 20 26 483 28 529 1.71e-51 191
Msa0895420 AT2G37050.1 30.545 514 289 19 26 483 28 529 1.77e-51 191
Msa0895420 AT1G67720.1 29.222 527 309 19 1 473 1 517 2.17e-50 187
Msa0895420 AT1G51870.2 28.626 524 334 18 1 497 1 511 3.34e-50 187
Msa0895420 AT1G07560.1 29.957 464 290 14 26 464 30 483 3.65e-50 186
Msa0895420 AT3G46370.2 29.812 426 271 12 79 482 2 421 3.71e-50 186
Msa0895420 AT3G46370.1 29.812 426 271 12 79 482 2 421 3.71e-50 186
Msa0895420 AT1G51880.3 29.518 498 309 17 1 464 19 508 1.37e-49 185
Msa0895420 AT1G51890.3 30.328 488 306 18 4 467 3 480 6.26e-49 182
Msa0895420 AT1G51890.2 30.328 488 306 18 4 467 3 480 1.23e-48 182
Msa0895420 AT1G51890.1 30.328 488 306 18 4 467 3 480 1.54e-48 182
Msa0895420 AT1G49100.1 28.942 463 299 16 26 465 30 485 3.57e-48 181
Msa0895420 AT4G29180.3 30.723 498 314 15 7 476 7 501 5.09e-47 177
Msa0895420 AT4G29180.2 30.723 498 314 15 7 476 7 501 5.54e-47 177
Msa0895420 AT1G51820.1 29.167 480 308 17 8 465 5 474 9.33e-47 176
Msa0895420 AT1G51850.1 28.384 458 281 13 26 465 26 454 6.17e-46 174
Msa0895420 AT1G51805.2 28.261 460 276 16 26 465 26 451 8.89e-46 174
Msa0895420 AT3G46240.1 33.535 331 183 10 27 350 6 306 1.46e-45 167
Msa0895420 AT4G29450.1 28.376 511 335 13 1 484 1 507 1.78e-44 170
Msa0895420 AT3G46330.2 29.099 433 279 14 26 437 31 456 2.26e-44 169
Msa0895420 AT2G04300.1 28.235 510 275 15 4 477 9 463 5.71e-44 168
Msa0895420 AT1G51910.1 29.757 494 306 18 1 464 1 483 6.83e-44 168
Msa0895420 AT4G29180.1 30.219 503 308 16 7 476 7 499 2.19e-42 164
Msa0895420 AT1G51870.1 28.125 448 288 16 1 422 1 440 2.25e-39 154
Msa0895420 AT5G48740.1 31.062 499 287 24 4 477 1 467 4.01e-37 148
Msa0895420 AT5G59660.2 28.810 420 237 15 70 476 41 411 1.70e-36 145
Msa0895420 AT2G28960.1 29.855 345 222 13 133 465 12 348 4.93e-34 138
Msa0895420 AT1G51860.2 30.699 329 212 11 134 451 2 325 5.42e-34 138
Msa0895420 AT2G28970.2 29.971 347 219 11 135 467 11 347 6.56e-33 134
Msa0895420 AT5G16900.4 29.595 321 194 13 197 493 16 328 7.47e-32 131
Msa0895420 AT1G51810.1 27.568 370 244 13 121 474 2 363 9.25e-31 128
Msa0895420 AT5G59660.3 25.956 497 271 18 1 476 16 436 2.02e-30 127
Msa0895420 AT1G28340.1 30.608 477 273 28 27 461 29 489 3.98e-30 125
Msa0895420 AT5G59660.1 25.755 497 269 19 1 476 16 433 8.27e-29 122
Msa0895420 AT2G28970.1 30.877 285 177 8 196 467 105 382 2.37e-28 120
Msa0895420 AT1G51890.4 29.846 325 204 12 158 467 101 416 2.77e-26 114
Msa0895420 AT1G51830.1 28.470 281 191 7 193 465 7 285 1.33e-24 108
Msa0895420 AT1G51830.2 28.470 281 191 7 193 465 14 292 1.57e-24 108
Msa0895420 AT3G46350.1 29.658 263 165 9 26 274 30 286 3.95e-24 105
Msa0895420 AT1G51820.2 36.184 152 90 4 321 465 61 212 1.08e-20 96.7
Msa0895420 AT1G51890.5 31.250 192 123 6 287 470 21 211 2.98e-18 89.0
Msa0895420 AT1G51840.2 30.769 182 114 4 1 174 8 185 8.58e-18 82.8
Msa0895420 AT1G51840.5 30.769 182 114 4 1 174 8 185 8.58e-18 82.8
Msa0895420 AT1G51840.4 30.769 182 114 4 1 174 8 185 8.58e-18 82.8
Msa0895420 AT1G51840.3 30.769 182 114 4 1 174 8 185 8.58e-18 82.8
Msa0895420 AT1G51840.1 30.769 182 114 4 1 174 8 185 8.58e-18 82.8
Msa0895420 AT5G59616.1 28.472 144 96 5 263 399 10 153 4.36e-15 73.6
Msa0895420 AT1G25570.1 24.748 497 281 22 29 477 32 483 2.52e-14 76.6
Msa0895420 AT5G63710.2 41.176 136 60 8 354 477 16 143 7.84e-14 75.1
Msa0895420 AT5G63710.4 41.176 136 60 8 354 477 16 143 7.84e-14 75.1
Msa0895420 AT5G63710.1 41.176 136 60 8 354 477 51 178 1.08e-13 74.7
Msa0895420 AT5G63710.3 41.176 136 60 8 354 477 52 179 1.31e-13 74.3
Msa0895420 AT3G08680.1 34.694 147 85 4 339 477 9 152 8.70e-13 71.6
Msa0895420 AT3G08680.2 34.694 147 85 4 339 477 9 152 8.70e-13 71.6
Msa0895420 AT5G65700.1 39.310 145 78 5 342 477 13 156 1.50e-12 71.2
Msa0895420 AT5G65700.2 39.310 145 78 5 342 477 13 156 1.50e-12 71.2
Msa0895420 AT1G60800.1 43.564 101 45 4 365 461 50 142 2.76e-12 70.1
Msa0895420 AT5G61240.1 30.811 185 108 9 339 513 12 186 6.66e-11 64.3
Msa0895420 AT3G25560.3 30.172 232 123 11 367 586 59 263 1.00e-10 65.1

Find 105 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGAATCAATTATATT+TGG 0.124331 6_1:-83342462 None:intergenic
GGTGATGAACCAAATATAAT+TGG 0.221312 6_1:+83342345 Msa0895420:CDS
GGTGATGAACCAAATATAAT+TGG 0.221312 6_1:+83342399 Msa0895420:CDS
CGCGATGATGCTTGCTTACT+TGG 0.225611 6_1:-83342300 None:intergenic
TTCAATTTGATGGTAACTAT+TGG 0.240710 6_1:+83339553 Msa0895420:CDS
GAAATTATGAAAAGTGCTTT+TGG 0.262374 6_1:+83340347 Msa0895420:CDS
GGTGGCGAACCAATTATATT+TGG 0.266666 6_1:-83342408 None:intergenic
GGTGGTGAACCAATTATATT+TGG 0.274106 6_1:-83342354 None:intergenic
CCTGAACGAAATTCTGAAAA+AGG 0.279470 6_1:-83342483 None:intergenic
ACGACATATACGATCGAATA+TGG 0.288988 6_1:+83340129 Msa0895420:CDS
ATTTCAAGTGATGATATAAA+AGG 0.289413 6_1:-83339684 None:intergenic
GTGTTTGATCTTCAATTTGA+TGG 0.296625 6_1:+83339543 Msa0895420:CDS
AAATATCTTAGTGTGCTTAA+TGG 0.301003 6_1:-83339411 None:intergenic
TTTATCAGTGAAAGATTTAG+AGG 0.315077 6_1:-83339310 None:intergenic
GGCAAAAGGCCTAGGAAATT+AGG 0.323590 6_1:-83341557 None:intergenic
AATACATGCAATTTATCAAT+AGG 0.324435 6_1:+83340279 Msa0895420:CDS
TGGTTCTATACCTGCATCTT+TGG 0.328478 6_1:+83341712 Msa0895420:CDS
ATTTGCTGAAGCTGTAATAT+TGG 0.329915 6_1:-83340459 None:intergenic
TGAGTAAAAGAAAACTTAAA+AGG 0.330123 6_1:-83339221 None:intergenic
TCAATTTGATGGTAACTATT+GGG 0.333029 6_1:+83339554 Msa0895420:CDS
TGTATCCAATCCCAACTATA+TGG 0.347661 6_1:-83341190 None:intergenic
AATATCTTAGTGTGCTTAAT+GGG 0.350479 6_1:-83339410 None:intergenic
CAATCCCAACTATATGGATA+TGG 0.358158 6_1:-83341184 None:intergenic
AGTGCTATTGTTCCTCCTCT+TGG 0.362968 6_1:+83340413 Msa0895420:CDS
ATAAACTTTGTGAAAATCAT+TGG 0.375391 6_1:-83342585 None:intergenic
CAATGCTGTTACACGAGGTT+TGG 0.390206 6_1:-83341227 None:intergenic
TATGCTAGTGAAATTTCCTT+TGG 0.390714 6_1:-83339631 None:intergenic
GCAGGAACTTGTCTTACAAT+AGG 0.391305 6_1:+83341684 Msa0895420:intron
ACTTACAATGTCTTAAGATT+AGG 0.394992 6_1:-83341578 None:intergenic
TTGGTGGAAATGAAACTATA+AGG 0.396160 6_1:+83339781 Msa0895420:CDS
GTCTACCATATCCATATAGT+TGG 0.400144 6_1:+83341179 Msa0895420:CDS
TTGCAATGGAGATATGCTTT+TGG 0.410315 6_1:+83339762 Msa0895420:CDS
TTGTCTTACAATAGGTTCAA+TGG 0.417791 6_1:+83341692 Msa0895420:CDS
TTGCAAAACAATACTATTGA+AGG 0.428188 6_1:+83341527 Msa0895420:CDS
GATGATGATTACATTCAAAA+TGG 0.435099 6_1:+83339354 Msa0895420:CDS
GCAGTCATGGAACTGAAATC+TGG 0.436453 6_1:-83341379 None:intergenic
AAAATATATAGGTATCTTAG+TGG 0.441637 6_1:+83341334 Msa0895420:intron
GTGGTGAATCAATTATATTT+GGG 0.442620 6_1:-83342461 None:intergenic
CATTTGAAGTGCTTGTGGAT+TGG 0.444317 6_1:+83341143 Msa0895420:CDS
ACATCAAATAATTGTCTATC+GGG 0.450615 6_1:+83342246 Msa0895420:CDS
ATCACTTGAAATAAGAAGCT+TGG 0.453928 6_1:+83339695 Msa0895420:CDS
GGGGATGCATCAGTGGGAAA+TGG 0.454241 6_1:+83342504 Msa0895420:CDS
CACATCAAATAATTGTCTAT+CGG 0.456561 6_1:+83342245 Msa0895420:CDS
GGACCTATTCCTAATTTCCT+AGG 0.458516 6_1:+83341548 Msa0895420:CDS
TTCTTATTCACCAAAGATGC+AGG 0.459461 6_1:-83341722 None:intergenic
ATGTCTTAAGATTAGGCAAA+AGG 0.459478 6_1:-83341571 None:intergenic
CATTGTTTCAAGTGCAGTCA+TGG 0.463257 6_1:-83341392 None:intergenic
CATATCCATATAGTTGGGAT+TGG 0.464440 6_1:+83341185 Msa0895420:CDS
AGGCCTAGGAAATTAGGAAT+AGG 0.464644 6_1:-83341551 None:intergenic
TTGCAAAATCAAAGCATGAT+TGG 0.470530 6_1:-83339745 None:intergenic
TAAGATTAGGCAAAAGGCCT+AGG 0.472644 6_1:-83341565 None:intergenic
TCAAAATGACTATACATTGT+AGG 0.475420 6_1:-83339720 None:intergenic
TCTACCATATCCATATAGTT+GGG 0.477390 6_1:+83341180 Msa0895420:CDS
ATTCGATCGTATATGTCGTC+CGG 0.486136 6_1:-83340125 None:intergenic
AAAGGAGGATACCGTATGCC+GGG 0.490085 6_1:-83340154 None:intergenic
ACTTCAAGAGCATTAAGTAT+AGG 0.496085 6_1:-83340524 None:intergenic
CGAATATGGACCCCGGCATA+CGG 0.496873 6_1:+83340143 Msa0895420:CDS
AGGTTTGTTACAACTTAAGT+TGG 0.505252 6_1:+83341120 Msa0895420:CDS
GATATAAAAGGAAATTGAGT+AGG 0.506134 6_1:-83339672 None:intergenic
ATAAGTTGAGGTGGTGGTGG+TGG 0.527197 6_1:-83342426 None:intergenic
ATAAGTCGAGGTGGTGGTGG+TGG 0.535666 6_1:-83342372 None:intergenic
TATTCCATCAAAGTTCCAAA+AGG 0.539806 6_1:+83339456 Msa0895420:CDS
GAAAGGAGGATACCGTATGC+CGG 0.541117 6_1:-83340155 None:intergenic
TATCAATAGGCTTCCAGCAG+AGG 0.541708 6_1:+83340292 Msa0895420:CDS
CTATATGGATATGGTAGACA+AGG 0.543490 6_1:-83341175 None:intergenic
GTTGGCATTTGAAGTGCTTG+TGG 0.543723 6_1:+83341138 Msa0895420:CDS
TCAAGAGCATTAAGTATAGG+AGG 0.545897 6_1:-83340521 None:intergenic
CCTAAAATAAGTTGAGGTGG+TGG 0.548368 6_1:-83342432 None:intergenic
ATAAGTGATGCATTCAATGC+AGG 0.548763 6_1:+83340554 Msa0895420:CDS
AAAATAAGTCGAGGTGGTGG+TGG 0.555136 6_1:-83342375 None:intergenic
AATGAAGTGTCAACCTCTCA+AGG 0.556085 6_1:+83342269 Msa0895420:CDS
CCTAAAATAAGTCGAGGTGG+TGG 0.559848 6_1:-83342378 None:intergenic
TTCGATCGTATATGTCGTCC+GGG 0.563325 6_1:-83340124 None:intergenic
ATCTTTGTGAGTATCAATTG+TGG 0.563921 6_1:+83339285 Msa0895420:CDS
TCGTTCAGGGGATGCATCAG+TGG 0.564300 6_1:+83342497 Msa0895420:CDS
CGTTCAGGGGATGCATCAGT+GGG 0.574697 6_1:+83342498 Msa0895420:CDS
CTCACAAAGATTGTGAGAGA+AGG 0.578802 6_1:-83339273 None:intergenic
CCTAAAATAAGTTGAGGTGG+TGG 0.579276 6_1:-83342324 None:intergenic
CTTGATGAATATACCTCTTG+AGG 0.579592 6_1:-83339381 None:intergenic
CTTGGTGACGATGCCTTGAG+AGG 0.584817 6_1:-83342282 None:intergenic
TACACGAGGTTTGGCATCAG+TGG 0.591729 6_1:-83341218 None:intergenic
AAAATAAGTTGAGGTGGTGG+TGG 0.592493 6_1:-83342429 None:intergenic
GCAGGAACTGATAGCAGAGA+TGG 0.592582 6_1:+83340572 Msa0895420:CDS
AAAATTTGTGGTATTAACCG+TGG 0.597397 6_1:-83339577 None:intergenic
TCTTTCACACTTCCAAGAGG+AGG 0.599641 6_1:-83340425 None:intergenic
CTTAGTGGTTATGAGTTGCA+AGG 0.601020 6_1:+83341349 Msa0895420:CDS
TCAAAATGGTGTGCCTCAAG+AGG 0.605504 6_1:+83339368 Msa0895420:CDS
TGATGGTAACTATTGGGCCA+CGG 0.610553 6_1:+83339560 Msa0895420:CDS
TTGGAACAAACTTAGGTACC+CGG 0.616409 6_1:+83340106 Msa0895420:intron
GAAGCAATATATGTAACCAA+AGG 0.617161 6_1:+83339615 Msa0895420:CDS
GAAGTGCTTGTGGATTGGAG+TGG 0.619148 6_1:+83341148 Msa0895420:CDS
TCACCTAAAATAAGTTGAGG+TGG 0.623144 6_1:-83342327 None:intergenic
TCTCCTAAAATAAGTTGAGG+TGG 0.623987 6_1:-83342435 None:intergenic
TGGTGGATGATCTTCTGCTG+TGG 0.626118 6_1:-83340213 None:intergenic
TCATCTCCTAAAATAAGTTG+AGG 0.631928 6_1:-83342438 None:intergenic
TCATCACCTAAAATAAGTTG+AGG 0.634411 6_1:-83342330 None:intergenic
TCAAATTGAAGATCAAACAC+TGG 0.635505 6_1:-83339540 None:intergenic
ACTTACAATGCTGTTACACG+AGG 0.647769 6_1:-83341232 None:intergenic
ACTTCTTTCACACTTCCAAG+AGG 0.652469 6_1:-83340428 None:intergenic
TCATCACCTAAAATAAGTCG+AGG 0.660823 6_1:-83342384 None:intergenic
AATTGAAGATCAAACACTGG+TGG 0.660940 6_1:-83339537 None:intergenic
AAGGAGGATACCGTATGCCG+GGG 0.677735 6_1:-83340153 None:intergenic
TCACCTAAAATAAGTCGAGG+TGG 0.683696 6_1:-83342381 None:intergenic
TATATGGATATGGTAGACAA+GGG 0.697612 6_1:-83341174 None:intergenic
ATACGATCGAATATGGACCC+CGG 0.703167 6_1:+83340136 Msa0895420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAAAATTTGATAAAT+TGG - chr6_1:83339912-83339931 None:intergenic 10.0%
!! AAAGTTAATTGAAAAATAAA+AGG - chr6_1:83341068-83341087 None:intergenic 10.0%
!!! TTTATATATCTAATGTTTTA+AGG - chr6_1:83342121-83342140 None:intergenic 10.0%
!! ATCAACATAATAAAAATTTG+TGG - chr6_1:83339592-83339611 None:intergenic 15.0%
!!! TCTTGTCATTTTTAAAATTT+GGG - chr6_1:83340986-83341005 None:intergenic 15.0%
!!! ATCTTGTCATTTTTAAAATT+TGG - chr6_1:83340987-83341006 None:intergenic 15.0%
!!! GTTTTATTTTATCAAATTAG+TGG + chr6_1:83341096-83341115 Msa0895420:intron 15.0%
!! TATAATAGCTACTAATAATT+TGG + chr6_1:83341299-83341318 Msa0895420:intron 15.0%
!! ATGTGACTTAAAAAATATAT+AGG + chr6_1:83341323-83341342 Msa0895420:intron 15.0%
!! ATGAAAGTAAAAAATATTGA+AGG - chr6_1:83342015-83342034 None:intergenic 15.0%
!! AAAAATATTTGATGAAAATG+TGG - chr6_1:83342074-83342093 None:intergenic 15.0%
!!! GTTTTTTTTAACAATTTTTC+TGG + chr6_1:83342182-83342201 Msa0895420:intron 15.0%
!! GTTTCTAACTTTAATTAATT+TGG + chr6_1:83342212-83342231 Msa0895420:intron 15.0%
!! TGAGTAAAAGAAAACTTAAA+AGG - chr6_1:83339224-83339243 None:intergenic 20.0%
!! CTGATAAAAACAATATAAGA+TGG + chr6_1:83339325-83339344 Msa0895420:CDS 20.0%
!!! ATTTCAAGTGATGATATAAA+AGG - chr6_1:83339687-83339706 None:intergenic 20.0%
!! ATTAACGTTGCATTAATTAA+AGG - chr6_1:83339830-83339849 None:intergenic 20.0%
!!! CATATCATTGTTTTAAATTG+CGG + chr6_1:83339933-83339952 Msa0895420:intron 20.0%
!!! ATCATTTTTGATGCTATTAT+TGG + chr6_1:83340075-83340094 Msa0895420:intron 20.0%
!! AATACATGCAATTTATCAAT+AGG + chr6_1:83340279-83340298 Msa0895420:CDS 20.0%
!! AACAAACAAAAGATAAACTA+TGG + chr6_1:83340683-83340702 Msa0895420:intron 20.0%
!! TGAAAAATAAAAGGAAATCA+TGG - chr6_1:83341059-83341078 None:intergenic 20.0%
!!! TATTTTATCAAATTAGTGGA+AGG + chr6_1:83341100-83341119 Msa0895420:intron 20.0%
!! AAAATATATAGGTATCTTAG+TGG + chr6_1:83341334-83341353 Msa0895420:intron 20.0%
!! TTACTTAGTGAAATTAGAAT+CGG - chr6_1:83341913-83341932 None:intergenic 20.0%
!! ATAAACTTTGTGAAAATCAT+TGG - chr6_1:83342588-83342607 None:intergenic 20.0%
! TTTATCAGTGAAAGATTTAG+AGG - chr6_1:83339313-83339332 None:intergenic 25.0%
! AAAAACAATATAAGATGGAG+TGG + chr6_1:83339330-83339349 Msa0895420:CDS 25.0%
! GATGATGATTACATTCAAAA+TGG + chr6_1:83339354-83339373 Msa0895420:CDS 25.0%
! AATATCTTAGTGTGCTTAAT+GGG - chr6_1:83339413-83339432 None:intergenic 25.0%
! AAATATCTTAGTGTGCTTAA+TGG - chr6_1:83339414-83339433 None:intergenic 25.0%
!! AGCAATTTTTCTTTCTACTT+GGG - chr6_1:83339437-83339456 None:intergenic 25.0%
!! TAGCAATTTTTCTTTCTACT+TGG - chr6_1:83339438-83339457 None:intergenic 25.0%
!! TTCAATTTGATGGTAACTAT+TGG + chr6_1:83339553-83339572 Msa0895420:CDS 25.0%
!! TCAATTTGATGGTAACTATT+GGG + chr6_1:83339554-83339573 Msa0895420:CDS 25.0%
! GATATAAAAGGAAATTGAGT+AGG - chr6_1:83339675-83339694 None:intergenic 25.0%
! TCAAAATGACTATACATTGT+AGG - chr6_1:83339723-83339742 None:intergenic 25.0%
! GCATTAATTAAAGGAATAGA+GGG - chr6_1:83339821-83339840 None:intergenic 25.0%
! TGCATTAATTAAAGGAATAG+AGG - chr6_1:83339822-83339841 None:intergenic 25.0%
!!! GAAATTATGAAAAGTGCTTT+TGG + chr6_1:83340347-83340366 Msa0895420:CDS 25.0%
! AAAGATAAACTATGGTCAAA+CGG + chr6_1:83340691-83340710 Msa0895420:intron 25.0%
!! GACATGTCTTAAATTGTTTT+TGG - chr6_1:83340770-83340789 None:intergenic 25.0%
! TATCTCTGATATCATCTTTA+TGG - chr6_1:83340804-83340823 None:intergenic 25.0%
! CTCTATAAAATCGAATTGTA+AGG - chr6_1:83340948-83340967 None:intergenic 25.0%
! TTGCAAAACAATACTATTGA+AGG + chr6_1:83341527-83341546 Msa0895420:CDS 25.0%
! ACTTACAATGTCTTAAGATT+AGG - chr6_1:83341581-83341600 None:intergenic 25.0%
!!! TTTTCCATTGCTTTAGAAAA+TGG + chr6_1:83341779-83341798 Msa0895420:intron 25.0%
! CACATCAAATAATTGTCTAT+CGG + chr6_1:83342245-83342264 Msa0895420:CDS 25.0%
! ACATCAAATAATTGTCTATC+GGG + chr6_1:83342246-83342265 Msa0895420:CDS 25.0%
! GTGGTGAATCAATTATATTT+GGG - chr6_1:83342464-83342483 None:intergenic 25.0%
ATCTTTGTGAGTATCAATTG+TGG + chr6_1:83339285-83339304 Msa0895420:CDS 30.0%
TATTCCATCAAAGTTCCAAA+AGG + chr6_1:83339456-83339475 Msa0895420:CDS 30.0%
!!! GCAAGAATTTTTTCACCTTT+TGG - chr6_1:83339474-83339493 None:intergenic 30.0%
AAGGTGAAAAAATTCTTGCT+AGG + chr6_1:83339475-83339494 Msa0895420:CDS 30.0%
AGGTGAAAAAATTCTTGCTA+GGG + chr6_1:83339476-83339495 Msa0895420:CDS 30.0%
TCAAATTGAAGATCAAACAC+TGG - chr6_1:83339543-83339562 None:intergenic 30.0%
GTGTTTGATCTTCAATTTGA+TGG + chr6_1:83339543-83339562 Msa0895420:CDS 30.0%
AAAATTTGTGGTATTAACCG+TGG - chr6_1:83339580-83339599 None:intergenic 30.0%
GAAGCAATATATGTAACCAA+AGG + chr6_1:83339615-83339634 Msa0895420:CDS 30.0%
TATGCTAGTGAAATTTCCTT+TGG - chr6_1:83339634-83339653 None:intergenic 30.0%
ATCACTTGAAATAAGAAGCT+TGG + chr6_1:83339695-83339714 Msa0895420:CDS 30.0%
TTGCAAAATCAAAGCATGAT+TGG - chr6_1:83339748-83339767 None:intergenic 30.0%
!! ATCATGCTTTGATTTTGCAA+TGG + chr6_1:83339748-83339767 Msa0895420:CDS 30.0%
TTGGTGGAAATGAAACTATA+AGG + chr6_1:83339781-83339800 Msa0895420:CDS 30.0%
CGCTGAGAATCTTTATATTA+TGG - chr6_1:83340035-83340054 None:intergenic 30.0%
GGAACAATAGCACTTAAAAA+TGG - chr6_1:83340407-83340426 None:intergenic 30.0%
! ATTTGCTGAAGCTGTAATAT+TGG - chr6_1:83340462-83340481 None:intergenic 30.0%
!! ACTTCAAGAGCATTAAGTAT+AGG - chr6_1:83340527-83340546 None:intergenic 30.0%
!! AGGTTTGTTACAACTTAAGT+TGG + chr6_1:83341120-83341139 Msa0895420:CDS 30.0%
TATATGGATATGGTAGACAA+GGG - chr6_1:83341177-83341196 None:intergenic 30.0%
TCTACCATATCCATATAGTT+GGG + chr6_1:83341180-83341199 Msa0895420:CDS 30.0%
ATGTCTTAAGATTAGGCAAA+AGG - chr6_1:83341574-83341593 None:intergenic 30.0%
!!! CTTTTTTCTTTGATTCATGC+AGG + chr6_1:83341666-83341685 Msa0895420:intron 30.0%
TTGTCTTACAATAGGTTCAA+TGG + chr6_1:83341692-83341711 Msa0895420:CDS 30.0%
TCATCACCTAAAATAAGTTG+AGG - chr6_1:83342333-83342352 None:intergenic 30.0%
GGTGATGAACCAAATATAAT+TGG + chr6_1:83342345-83342364 Msa0895420:CDS 30.0%
GGTGATGAACCAAATATAAT+TGG + chr6_1:83342345-83342364 Msa0895420:CDS 30.0%
TCATCTCCTAAAATAAGTTG+AGG - chr6_1:83342441-83342460 None:intergenic 30.0%
GGTGGTGAATCAATTATATT+TGG - chr6_1:83342465-83342484 None:intergenic 30.0%
!!! CTTTTTCAGAATTTCGTTCA+GGG + chr6_1:83342484-83342503 Msa0895420:CDS 30.0%
!! TTTTTCAGAATTTCGTTCAG+GGG + chr6_1:83342485-83342504 Msa0895420:CDS 30.0%
CTTGATGAATATACCTCTTG+AGG - chr6_1:83339384-83339403 None:intergenic 35.0%
!!! TTCACCTTTTGGAACTTTGA+TGG - chr6_1:83339463-83339482 None:intergenic 35.0%
AATTGAAGATCAAACACTGG+TGG - chr6_1:83339540-83339559 None:intergenic 35.0%
! TTGCAATGGAGATATGCTTT+TGG + chr6_1:83339762-83339781 Msa0895420:CDS 35.0%
AAGGAATAGAGGGAGTAATT+TGG - chr6_1:83339811-83339830 None:intergenic 35.0%
TTTATATGCAACTGCAGTTG+CGG - chr6_1:83339960-83339979 None:intergenic 35.0%
GGTCAATGCAGATGAAATTA+CGG - chr6_1:83340014-83340033 None:intergenic 35.0%
! GCTATTATTGGTGCATTGAT+TGG + chr6_1:83340087-83340106 Msa0895420:intron 35.0%
!! GCATTGATTGGAACAAACTT+AGG + chr6_1:83340099-83340118 Msa0895420:intron 35.0%
ACGACATATACGATCGAATA+TGG + chr6_1:83340129-83340148 Msa0895420:CDS 35.0%
!!! TGATTCCTCGCTTTTTACTT+CGG - chr6_1:83340180-83340199 None:intergenic 35.0%
! TAAACATCATTTTCCTCTGC+TGG - chr6_1:83340308-83340327 None:intergenic 35.0%
!! TCAAGAGCATTAAGTATAGG+AGG - chr6_1:83340524-83340543 None:intergenic 35.0%
ATAAGTGATGCATTCAATGC+AGG + chr6_1:83340554-83340573 Msa0895420:CDS 35.0%
GTAAGTGACTAAATCTGTCA+TGG + chr6_1:83340594-83340613 Msa0895420:intron 35.0%
AAGCTATCGTGAAGAGTTTA+TGG + chr6_1:83340737-83340756 Msa0895420:intron 35.0%
CTATATGGATATGGTAGACA+AGG - chr6_1:83341178-83341197 None:intergenic 35.0%
GTCTACCATATCCATATAGT+TGG + chr6_1:83341179-83341198 Msa0895420:CDS 35.0%
CAATCCCAACTATATGGATA+TGG - chr6_1:83341187-83341206 None:intergenic 35.0%
CATATCCATATAGTTGGGAT+TGG + chr6_1:83341185-83341204 Msa0895420:CDS 35.0%
TGTATCCAATCCCAACTATA+TGG - chr6_1:83341193-83341212 None:intergenic 35.0%
TTCTTATTCACCAAAGATGC+AGG - chr6_1:83341725-83341744 None:intergenic 35.0%
!!! CCTTCCATTTTCTAAAGCAA+TGG - chr6_1:83341786-83341805 None:intergenic 35.0%
!! CCATTGCTTTAGAAAATGGA+AGG + chr6_1:83341783-83341802 Msa0895420:intron 35.0%
!! TTGCTTTAGAAAATGGAAGG+AGG + chr6_1:83341786-83341805 Msa0895420:intron 35.0%
! TCACCTAAAATAAGTTGAGG+TGG - chr6_1:83342330-83342349 None:intergenic 35.0%
GGTGGTGAACCAATTATATT+TGG - chr6_1:83342357-83342376 None:intergenic 35.0%
TCATCACCTAAAATAAGTCG+AGG - chr6_1:83342387-83342406 None:intergenic 35.0%
! TCTCCTAAAATAAGTTGAGG+TGG - chr6_1:83342438-83342457 None:intergenic 35.0%
! GAACGAAATTCTGAAAAAGG+TGG - chr6_1:83342483-83342502 None:intergenic 35.0%
! CCTGAACGAAATTCTGAAAA+AGG - chr6_1:83342486-83342505 None:intergenic 35.0%
!!! CCTTTTTCAGAATTTCGTTC+AGG + chr6_1:83342483-83342502 Msa0895420:CDS 35.0%
CTCACAAAGATTGTGAGAGA+AGG - chr6_1:83339276-83339295 None:intergenic 40.0%
! GCTAGGGCAAGCTTTTATTA+TGG + chr6_1:83339492-83339511 Msa0895420:CDS 40.0%
! CAATGGAGATATGCTTTTGG+TGG + chr6_1:83339765-83339784 Msa0895420:CDS 40.0%
TTGGAACAAACTTAGGTACC+CGG + chr6_1:83340106-83340125 Msa0895420:intron 40.0%
ATTCGATCGTATATGTCGTC+CGG - chr6_1:83340128-83340147 None:intergenic 40.0%
!! TTTTTCAATGCAGCTTCTGG+TGG - chr6_1:83340233-83340252 None:intergenic 40.0%
!! GCATTTTTCAATGCAGCTTC+TGG - chr6_1:83340236-83340255 None:intergenic 40.0%
ACTTCTTTCACACTTCCAAG+AGG - chr6_1:83340431-83340450 None:intergenic 40.0%
CTATCAGACCACTTAGTTCA+TGG + chr6_1:83340848-83340867 Msa0895420:intron 40.0%
CATTTGGACCATGAACTAAG+TGG - chr6_1:83340859-83340878 None:intergenic 40.0%
ATGGTCCAAATGTCCAATTG+TGG + chr6_1:83340867-83340886 Msa0895420:intron 40.0%
TGGTCCAAATGTCCAATTGT+GGG + chr6_1:83340868-83340887 Msa0895420:intron 40.0%
AATGCCCACAATTGGACATT+TGG - chr6_1:83340875-83340894 None:intergenic 40.0%
ATGTCCAATTGTGGGCATTA+AGG + chr6_1:83340876-83340895 Msa0895420:intron 40.0%
ATCTCCTTAATGCCCACAAT+TGG - chr6_1:83340883-83340902 None:intergenic 40.0%
! CATTTGAAGTGCTTGTGGAT+TGG + chr6_1:83341143-83341162 Msa0895420:CDS 40.0%
ACTTACAATGCTGTTACACG+AGG - chr6_1:83341235-83341254 None:intergenic 40.0%
CTTAGTGGTTATGAGTTGCA+AGG + chr6_1:83341349-83341368 Msa0895420:CDS 40.0%
! CATTGTTTCAAGTGCAGTCA+TGG - chr6_1:83341395-83341414 None:intergenic 40.0%
GGACCTATTCCTAATTTCCT+AGG + chr6_1:83341548-83341567 Msa0895420:CDS 40.0%
AGGCCTAGGAAATTAGGAAT+AGG - chr6_1:83341554-83341573 None:intergenic 40.0%
TAAGATTAGGCAAAAGGCCT+AGG - chr6_1:83341568-83341587 None:intergenic 40.0%
GCAGGAACTTGTCTTACAAT+AGG + chr6_1:83341684-83341703 Msa0895420:intron 40.0%
! TGGTTCTATACCTGCATCTT+TGG + chr6_1:83341712-83341731 Msa0895420:CDS 40.0%
GAAAATGGAAGGAGGAAAGT+TGG + chr6_1:83341794-83341813 Msa0895420:intron 40.0%
TTAGAATCGGTTGACGATCA+TGG - chr6_1:83341900-83341919 None:intergenic 40.0%
! AATGAAGTGTCAACCTCTCA+AGG + chr6_1:83342269-83342288 Msa0895420:CDS 40.0%
! CCTAAAATAAGTTGAGGTGG+TGG - chr6_1:83342327-83342346 None:intergenic 40.0%
!! CCACCACCTCAACTTATTTT+AGG + chr6_1:83342324-83342343 Msa0895420:CDS 40.0%
TCACCTAAAATAAGTCGAGG+TGG - chr6_1:83342384-83342403 None:intergenic 40.0%
GGTGGCGAACCAATTATATT+TGG - chr6_1:83342411-83342430 None:intergenic 40.0%
! AAAATAAGTTGAGGTGGTGG+TGG - chr6_1:83342324-83342343 None:intergenic 40.0%
! CCTAAAATAAGTTGAGGTGG+TGG - chr6_1:83342327-83342346 None:intergenic 40.0%
!! CCACCACCTCAACTTATTTT+AGG + chr6_1:83342324-83342343 Msa0895420:CDS 40.0%
TCAAAATGGTGTGCCTCAAG+AGG + chr6_1:83339368-83339387 Msa0895420:CDS 45.0%
TGATGGTAACTATTGGGCCA+CGG + chr6_1:83339560-83339579 Msa0895420:CDS 45.0%
TTCGATCGTATATGTCGTCC+GGG - chr6_1:83340127-83340146 None:intergenic 45.0%
ATACGATCGAATATGGACCC+CGG + chr6_1:83340136-83340155 Msa0895420:CDS 45.0%
!! CGCTTTTTACTTCGGAAAGG+AGG - chr6_1:83340172-83340191 None:intergenic 45.0%
!!! CCTCGCTTTTTACTTCGGAA+AGG - chr6_1:83340175-83340194 None:intergenic 45.0%
CCTTTCCGAAGTAAAAAGCG+AGG + chr6_1:83340172-83340191 Msa0895420:CDS 45.0%
TATCAATAGGCTTCCAGCAG+AGG + chr6_1:83340292-83340311 Msa0895420:CDS 45.0%
! AGTGCTATTGTTCCTCCTCT+TGG + chr6_1:83340413-83340432 Msa0895420:CDS 45.0%
TCTTTCACACTTCCAAGAGG+AGG - chr6_1:83340428-83340447 None:intergenic 45.0%
AAATCTGTCATGGCGCTGTT+TGG + chr6_1:83340604-83340623 Msa0895420:intron 45.0%
! CTAAGTGGTCTGATAGTGAG+TGG - chr6_1:83340844-83340863 None:intergenic 45.0%
AGAGTCTCACATCGAATGAG+TGG + chr6_1:83340909-83340928 Msa0895420:intron 45.0%
! GTTGGCATTTGAAGTGCTTG+TGG + chr6_1:83341138-83341157 Msa0895420:CDS 45.0%
CAATGCTGTTACACGAGGTT+TGG - chr6_1:83341230-83341249 None:intergenic 45.0%
GCAGTCATGGAACTGAAATC+TGG - chr6_1:83341382-83341401 None:intergenic 45.0%
GGCAAAAGGCCTAGGAAATT+AGG - chr6_1:83341560-83341579 None:intergenic 45.0%
! ATGGAAGGAGGAAAGTTGGT+TGG + chr6_1:83341798-83341817 Msa0895420:intron 45.0%
! AAAATAAGTCGAGGTGGTGG+TGG - chr6_1:83342378-83342397 None:intergenic 45.0%
CCTAAAATAAGTCGAGGTGG+TGG - chr6_1:83342381-83342400 None:intergenic 45.0%
!! CCACCACCTCGACTTATTTT+AGG + chr6_1:83342378-83342397 Msa0895420:CDS 45.0%
!! ATTAAATATAATAAAACTAT+TGG - chr6_1:83341467-83341486 None:intergenic 5.0%
AAAGGAGGATACCGTATGCC+GGG - chr6_1:83340157-83340176 None:intergenic 50.0%
GAAAGGAGGATACCGTATGC+CGG - chr6_1:83340158-83340177 None:intergenic 50.0%
! TGGTGGATGATCTTCTGCTG+TGG - chr6_1:83340216-83340235 None:intergenic 50.0%
GCAGGAACTGATAGCAGAGA+TGG + chr6_1:83340572-83340591 Msa0895420:CDS 50.0%
GTCTCACATCGAATGAGTGG+TGG + chr6_1:83340912-83340931 Msa0895420:intron 50.0%
!! GAAGTGCTTGTGGATTGGAG+TGG + chr6_1:83341148-83341167 Msa0895420:CDS 50.0%
TACACGAGGTTTGGCATCAG+TGG - chr6_1:83341221-83341240 None:intergenic 50.0%
CGCGATGATGCTTGCTTACT+TGG - chr6_1:83342303-83342322 None:intergenic 50.0%
!! ATAAGTTGAGGTGGTGGTGG+TGG - chr6_1:83342429-83342448 None:intergenic 50.0%
CGAATATGGACCCCGGCATA+CGG + chr6_1:83340143-83340162 Msa0895420:CDS 55.0%
AAGGAGGATACCGTATGCCG+GGG - chr6_1:83340156-83340175 None:intergenic 55.0%
!! CTTGGTGACGATGCCTTGAG+AGG - chr6_1:83342285-83342304 None:intergenic 55.0%
!! ATAAGTCGAGGTGGTGGTGG+TGG - chr6_1:83342375-83342394 None:intergenic 55.0%
TCGTTCAGGGGATGCATCAG+TGG + chr6_1:83342497-83342516 Msa0895420:CDS 55.0%
CGTTCAGGGGATGCATCAGT+GGG + chr6_1:83342498-83342517 Msa0895420:CDS 55.0%
GGGGATGCATCAGTGGGAAA+TGG + chr6_1:83342504-83342523 Msa0895420:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 83339213 83342611 83339213 ID=Msa0895420;Name=Msa0895420
chr6_1 mRNA 83339213 83342611 83339213 ID=Msa0895420-mRNA-1;Parent=Msa0895420;Name=Msa0895420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|7|0|590
chr6_1 exon 83339213 83339802 83339213 ID=Msa0895420-mRNA-1:exon:14041;Parent=Msa0895420-mRNA-1
chr6_1 exon 83340121 83340593 83340121 ID=Msa0895420-mRNA-1:exon:14042;Parent=Msa0895420-mRNA-1
chr6_1 exon 83341116 83341248 83341116 ID=Msa0895420-mRNA-1:exon:14043;Parent=Msa0895420-mRNA-1
chr6_1 exon 83341345 83341413 83341345 ID=Msa0895420-mRNA-1:exon:14044;Parent=Msa0895420-mRNA-1
chr6_1 exon 83341523 83341594 83341523 ID=Msa0895420-mRNA-1:exon:14045;Parent=Msa0895420-mRNA-1
chr6_1 exon 83341688 83341756 83341688 ID=Msa0895420-mRNA-1:exon:14046;Parent=Msa0895420-mRNA-1
chr6_1 exon 83342245 83342611 83342245 ID=Msa0895420-mRNA-1:exon:14047;Parent=Msa0895420-mRNA-1
chr6_1 CDS 83339213 83339802 83339213 ID=Msa0895420-mRNA-1:cds;Parent=Msa0895420-mRNA-1
chr6_1 CDS 83340121 83340593 83340121 ID=Msa0895420-mRNA-1:cds;Parent=Msa0895420-mRNA-1
chr6_1 CDS 83341116 83341248 83341116 ID=Msa0895420-mRNA-1:cds;Parent=Msa0895420-mRNA-1
chr6_1 CDS 83341345 83341413 83341345 ID=Msa0895420-mRNA-1:cds;Parent=Msa0895420-mRNA-1
chr6_1 CDS 83341523 83341594 83341523 ID=Msa0895420-mRNA-1:cds;Parent=Msa0895420-mRNA-1
chr6_1 CDS 83341688 83341756 83341688 ID=Msa0895420-mRNA-1:cds;Parent=Msa0895420-mRNA-1
chr6_1 CDS 83342245 83342611 83342245 ID=Msa0895420-mRNA-1:cds;Parent=Msa0895420-mRNA-1
Gene Sequence

>Msa0895420

ATGAAAAGCCTTTTAAGTTTTCTTTTACTCATAGCAATTTCTTTGCTATCATTCTCAAAACCTTCTCTCACAATCTTTGTGAGTATCAATTGTGGATCCTCTAAATCTTTCACTGATAAAAACAATATAAGATGGAGTGGTGATGATGATTACATTCAAAATGGTGTGCCTCAAGAGGTATATTCATCAAGTTCTAGCCCATTAAGCACACTAAGATATTTCCCAAGTAGAAAGAAAAATTGCTATTCCATCAAAGTTCCAAAAGGTGAAAAAATTCTTGCTAGGGCAAGCTTTTATTATGGAAATTATGATAATAAATTATCACCACCAGTGTTTGATCTTCAATTTGATGGTAACTATTGGGCCACGGTTAATACCACAAATTTTTATTATGTTGATTATGAAGCAATATATGTAACCAAAGGAAATTTCACTAGCATATGTGTTGCTCAAACAAAACCTACTCAATTTCCTTTTATATCATCACTTGAAATAAGAAGCTTGGATCCTACAATGTATAGTCATTTTGATACCAATCATGCTTTGATTTTGCAATGGAGATATGCTTTTGGTGGAAATGAAACTATAAGGTACCCGGACGACATATACGATCGAATATGGACCCCGGCATACGGTATCCTCCTTTCCGAAGTAAAAAGCGAGGAATCAAGCTTTGACATTACCACAGCAGAAGATCATCCACCAGAAGCTGCATTGAAAAATGCTATTGTTTCATCAAGCACAAATGAATACATGCAATTTATCAATAGGCTTCCAGCAGAGGAAAATGATGTTTATGTAAATGCTTATTTCTCAGAAATTATGAAAAGTGCTTTTGGAAAAAGATCAATTCAGATGTATATAGATGATAAGCCATTTTTAAGTGCTATTGTTCCTCCTCTTGGAAGTGTGAAAGAAGTGTATATAACCAATATTACAGCTTCAGCAAATACTACATTTGTTCTGCAAGCTTCAGAGTCTTCTACTCTTCCTCCTATACTTAATGCTCTTGAAGTTTTTACAATAAGTGATGCATTCAATGCAGGAACTGATAGCAGAGATGTGGAAGGTTTGTTACAACTTAAGTTGGCATTTGAAGTGCTTGTGGATTGGAGTGGAGACCCTTGTCTACCATATCCATATAGTTGGGATTGGATACAATGTACCACTGATGCCAAACCTCGTGTAACAGCATTGTATCTTAGTGGTTATGAGTTGCAAGGCACTCTTCCAGATTTCAGTTCCATGACTGCACTTGAAACAATTGATTTGCAAAACAATACTATTGAAGGACCTATTCCTAATTTCCTAGGCCTTTTGCCTAATCTTAAGACATTGAACTTGTCTTACAATAGGTTCAATGGTTCTATACCTGCATCTTTGGTGAATAAGAAAATTGAAACTGACACATCAAATAATTGTCTATCGGGAATGAAGTGTCAACCTCTCAAGGCATCGTCACCAAGTAAGCAAGCATCATCGCGACCACCACCTCAACTTATTTTAGGTGATGAACCAAATATAATTGGTTCACCACCACCACCACCTCGACTTATTTTAGGTGATGAACCAAATATAATTGGTTCGCCACCACCACCACCTCAACTTATTTTAGGAGATGACCCAAATATAATTGATTCACCACCTTTTTCAGAATTTCGTTCAGGGGATGCATCAGTGGGAAATGGAAGCTTGAAGAACAACAAACTGAACATATTATTCATACTAGCTGCACAAACTTTGCTGCCAATGATTTTCACAAAGTTTATATGA
Protein sequence

>Msa0895420

MKSLLSFLLLIAISLLSFSKPSLTIFVSINCGSSKSFTDKNNIRWSGDDDYIQNGVPQEVYSSSSSPLSTLRYFPSRKKNCYSIKVPKGEKILARASFYYGNYDNKLSPPVFDLQFDGNYWATVNTTNFYYVDYEAIYVTKGNFTSICVAQTKPTQFPFISSLEIRSLDPTMYSHFDTNHALILQWRYAFGGNETIRYPDDIYDRIWTPAYGILLSEVKSEESSFDITTAEDHPPEAALKNAIVSSSTNEYMQFINRLPAEENDVYVNAYFSEIMKSAFGKRSIQMYIDDKPFLSAIVPPLGSVKEVYITNITASANTTFVLQASESSTLPPILNALEVFTISDAFNAGTDSRDVEGLLQLKLAFEVLVDWSGDPCLPYPYSWDWIQCTTDAKPRVTALYLSGYELQGTLPDFSSMTALETIDLQNNTIEGPIPNFLGLLPNLKTLNLSYNRFNGSIPASLVNKKIETDTSNNCLSGMKCQPLKASSPSKQASSRPPPQLILGDEPNIIGSPPPPPRLILGDEPNIIGSPPPPPQLILGDDPNIIDSPPFSEFRSGDASVGNGSLKNNKLNILFILAAQTLLPMIFTKFI*