AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0639410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639410 MtrunA17_Chr4g0028551 99.049 526 5 0 1 526 1 526 0.0 1069
Msa0639410 MtrunA17_Chr4g0028541 99.049 526 5 0 1 526 1 526 0.0 1069
Msa0639410 MtrunA17_Chr8g0368421 61.554 489 186 2 38 524 18 506 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639410 AT1G08090.1 79.017 529 108 1 1 526 1 529 0.0 882
Msa0639410 AT5G60770.1 79.017 529 105 2 1 526 1 526 0.0 877
Msa0639410 AT1G08100.1 75.048 517 126 2 7 521 6 521 0.0 818
Msa0639410 AT5G60780.1 72.983 533 136 3 2 526 6 538 0.0 793
Msa0639410 AT3G45060.1 72.097 534 136 4 5 526 9 541 0.0 780
Msa0639410 AT1G12940.1 59.259 486 194 2 38 522 20 502 0.0 605
Msa0639410 AT5G14570.1 48.511 470 220 4 41 493 18 482 2.81e-151 442

Find 133 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGTTATCATGGGTATTT+TGG 0.143284 4_3:-35256637 Msa0639410:CDS
GCCGGAGTCGCTTCGGTTTC+AGG 0.162646 4_3:-35257032 Msa0639410:CDS
TGCTGCTGGTTGGGGTAATA+TGG 0.200878 4_3:-35256769 Msa0639410:CDS
ATCAACTGGTAATGCAAATT+TGG 0.211102 4_3:+35257229 None:intergenic
AAAATTATTGGACTTGTTAA+TGG 0.213969 4_3:-35256795 Msa0639410:CDS
ATGTTTAATAGTAAAATTAT+TGG 0.217642 4_3:-35256807 Msa0639410:CDS
CATTTGTTTCATGCCAATAT+TGG 0.240129 4_3:-35256839 Msa0639410:CDS
ACTGCTTTATGGTTACTCTA+TGG 0.275641 4_3:-35256362 Msa0639410:CDS
GGTTGCATCAACCAAGTCTT+AGG 0.277283 4_3:-35255532 Msa0639410:CDS
GGAATCATTGCTGCATCCTT+TGG 0.291659 4_3:-35256058 Msa0639410:CDS
CAACAGCTTCAGGTCTTTCA+TGG 0.291908 4_3:-35255700 Msa0639410:CDS
CACTCAGCTTATTATGCCTT+TGG 0.295935 4_3:-35256736 Msa0639410:CDS
GTTTATGATTGGTTTCTCTT+TGG 0.307610 4_3:-35256865 Msa0639410:CDS
AGCTCCATGCATGGAGTAAC+TGG 0.308320 4_3:-35257311 Msa0639410:CDS
TAATGGTACTGCTGCTGGTT+GGG 0.317688 4_3:-35256778 Msa0639410:CDS
GATGTTGCAGCAAGATTATT+CGG 0.318773 4_3:-35255992 Msa0639410:CDS
GGAATTATATCAGGTTTAAC+TGG 0.326492 4_3:-35255785 Msa0639410:CDS
TGAAAAGAGTTTGAAAACTT+TGG 0.345000 4_3:+35257193 None:intergenic
TTCATATCAAGAAGATCTTT+AGG 0.352927 4_3:-35255806 Msa0639410:CDS
GGTGCAATTTGTGACCTATT+AGG 0.354243 4_3:-35256984 Msa0639410:CDS
TTCCAGCTGTGTGTAGCTTT+AGG 0.354844 4_3:+35256077 None:intergenic
ACATAGTACTCATCCAATAT+TGG 0.362676 4_3:+35256826 None:intergenic
AGATCTTTAGGAATTATATC+AGG 0.365455 4_3:-35255794 Msa0639410:CDS
AGAAAGATATCCATGATAAA+TGG 0.374158 4_3:+35257144 None:intergenic
CACCATTAGTCCCGATCATC+CGG 0.374314 4_3:-35257091 Msa0639410:CDS
TGGTTGGTTGCATGTTATCA+TGG 0.382144 4_3:-35256646 Msa0639410:CDS
GTGCTACTCCTTTCACTGCT+TGG 0.383160 4_3:-35256689 Msa0639410:CDS
CTGCTGGTTATATAGCAGTT+AGG 0.391168 4_3:-35256887 Msa0639410:CDS
TAGTGGGTAGGAGTTGTATT+TGG 0.393817 4_3:+35255452 None:intergenic
ACTCCATGCATGGAGCTTCC+AGG 0.398090 4_3:+35257317 None:intergenic
GGTTGGGGTAATATGGGTGG+TGG 0.398747 4_3:-35256762 Msa0639410:CDS
GCAGGTGGAAACTTTGGTTC+CGG 0.404321 4_3:-35255761 Msa0639410:CDS
AACTTAGTTGCTCGTCCATT+CGG 0.406657 4_3:-35256028 Msa0639410:CDS
AACCATAACGTGGACCTAAT+AGG 0.411808 4_3:+35256970 None:intergenic
GCTGCTGGTTGGGGTAATAT+GGG 0.417787 4_3:-35256768 Msa0639410:CDS
GCTGCATGTGGTGCAACATT+TGG 0.420104 4_3:-35255839 Msa0639410:CDS
TCGGCATGCGAGGAAGACTA+TGG 0.425122 4_3:-35255973 Msa0639410:CDS
CGCGAATGTCGAGACGAAAC+AGG 0.435192 4_3:+35257118 None:intergenic
GTTGGGGTAATATGGGTGGT+GGG 0.435234 4_3:-35256761 Msa0639410:CDS
ATAGCAGTTAGGTTTATGAT+TGG 0.436014 4_3:-35256876 Msa0639410:CDS
CTGCTTTATGGTTACTCTAT+GGG 0.436463 4_3:-35256361 Msa0639410:CDS
TGGATGGGTGCAATGATTGT+TGG 0.437054 4_3:-35255680 Msa0639410:CDS
AGAAAACTCCACCTAGGGTT+TGG 0.441383 4_3:+35255936 None:intergenic
AAAGATCTTCTTGATATGAA+TGG 0.442192 4_3:+35255809 None:intergenic
TATATCAATGGCTGATATTG+AGG 0.442270 4_3:-35257345 None:intergenic
AAATATCAACTGTGTTAATC+CGG 0.442980 4_3:+35255742 None:intergenic
GGTATGCTATAACAAATTAC+AGG 0.443291 4_3:-35256399 Msa0639410:CDS
GACCTATTAGGTCCACGTTA+TGG 0.448846 4_3:-35256972 Msa0639410:CDS
AATGGTACTGCTGCTGGTTG+GGG 0.451568 4_3:-35256777 Msa0639410:CDS
AACATTACCCTTCTTCTGTA+AGG 0.451966 4_3:+35256572 None:intergenic
ACTGGTGCAGGTGGAAACTT+TGG 0.451991 4_3:-35255767 Msa0639410:CDS
GGAAAATGAACAAATGCAAC+AGG 0.456403 4_3:+35255647 None:intergenic
TGAGAACCTTCCATTTATCA+TGG 0.456413 4_3:-35257154 Msa0639410:CDS
CTTGTTAATGGTACTGCTGC+TGG 0.461616 4_3:-35256783 Msa0639410:CDS
GCTGATATTGAGGGTTCACC+TGG 0.463825 4_3:-35257335 Msa0639410:CDS
AGCTTCAGGTCTTTCATGGA+TGG 0.465615 4_3:-35255696 Msa0639410:CDS
ATATCAGGTTTAACTGGTGC+AGG 0.466260 4_3:-35255779 Msa0639410:CDS
TAAGGTTGTCCCGGATGATC+GGG 0.469055 4_3:+35257081 None:intergenic
TTGCTGAGTATTTCTATGAC+AGG 0.469828 4_3:-35256312 Msa0639410:intron
AACACTATTACACTTCTGAA+TGG 0.470788 4_3:-35255577 Msa0639410:CDS
TGGTAACGCCGGAGTCGCTT+CGG 0.471102 4_3:-35257039 Msa0639410:CDS
GGTTACCATCAGGTAAATCT+TGG 0.480850 4_3:+35256601 None:intergenic
TCCCGGATGATCGGGACTAA+TGG 0.489566 4_3:+35257089 None:intergenic
CCTTGGTGCCTTACAGAAGA+AGG 0.498271 4_3:-35256580 Msa0639410:CDS
TTAATGGTACTGCTGCTGGT+TGG 0.498414 4_3:-35256779 Msa0639410:CDS
CTGTTTCGTCTCGACATTCG+CGG 0.504824 4_3:-35257117 Msa0639410:CDS
TCTTCCAGTTACTCCATGCA+TGG 0.504862 4_3:+35257307 None:intergenic
TTGGGGTAATATGGGTGGTG+GGG 0.507796 4_3:-35256760 Msa0639410:CDS
AACCTAAAGCTACACACAGC+TGG 0.512286 4_3:-35256079 Msa0639410:CDS
CTATAACAAATTACAGGACA+TGG 0.513380 4_3:-35256393 Msa0639410:CDS
TTGTGAGGTTAAGGTTGTCC+CGG 0.513783 4_3:+35257072 None:intergenic
TTAAGGTTGTCCCGGATGAT+CGG 0.515983 4_3:+35257080 None:intergenic
GTGGTATCAGTTGGAACCAT+TGG 0.524676 4_3:+35257254 None:intergenic
GATTTGTGTTCAGAATCAAC+TGG 0.525048 4_3:+35257215 None:intergenic
ATGAAGATGAAGTACAGAAA+GGG 0.525551 4_3:-35255553 Msa0639410:CDS
AATGAAGATGAAGTACAGAA+AGG 0.527504 4_3:-35255554 Msa0639410:CDS
TCATTTGTTGAAAATGCTGC+TGG 0.536611 4_3:-35256903 Msa0639410:CDS
GATTTACCTGATGGTAACCT+TGG 0.538623 4_3:-35256597 Msa0639410:CDS
TCCATGATCCTCTTCTCAGT+TGG 0.543814 4_3:-35255869 Msa0639410:CDS
ATATCAATGGCTGATATTGA+GGG 0.546989 4_3:-35257344 None:intergenic
GTCATCAGTTGCTTCACCAA+TGG 0.548350 4_3:-35257270 Msa0639410:CDS
CATTGCTGCATCCTTTGGAA+TGG 0.548449 4_3:-35256053 Msa0639410:CDS
TTCTCAGCAAACCTAAGACT+TGG 0.549078 4_3:+35255521 None:intergenic
GGTTGGTTGCATGTTATCAT+GGG 0.550695 4_3:-35256645 Msa0639410:CDS
GCTTCAGGTCTTTCATGGAT+GGG 0.552112 4_3:-35255695 Msa0639410:CDS
ATGATAACATGCAACCAACC+AGG 0.556711 4_3:+35256648 None:intergenic
CTTGTGCTCCAACTGAGAAG+AGG 0.561854 4_3:+35255861 None:intergenic
GGCATATAACTTGTACTAGT+GGG 0.562820 4_3:+35255436 None:intergenic
TGGGTAGGAGTTGTATTTGG+TGG 0.563220 4_3:+35255455 None:intergenic
ACCTGAAACCGAAGCGACTC+CGG 0.567599 4_3:+35257031 None:intergenic
TCTGATGCATAACCGCCGAA+TGG 0.569739 4_3:+35256013 None:intergenic
TTAGTTGCTCGTCCATTCGG+CGG 0.569840 4_3:-35256025 Msa0639410:CDS
TCACCTGGAAGCTCCATGCA+TGG 0.576261 4_3:-35257320 Msa0639410:CDS
AATTTGGCTGTGGTATCAGT+TGG 0.576596 4_3:+35257245 None:intergenic
GCAATTCTCCAAGCAGTGAA+AGG 0.578221 4_3:+35256681 None:intergenic
GAGAATAGTCGTTCTGAGAG+AGG 0.578576 4_3:-35255503 Msa0639410:CDS
AACTAAGTTTGCCATTCCAA+AGG 0.580941 4_3:+35256042 None:intergenic
AATGACATACAAAACACTGT+TGG 0.582355 4_3:+35256921 None:intergenic
AAATGGAAGGTTCTCATGTG+AGG 0.586590 4_3:+35257161 None:intergenic
CCTTCTTCTGTAAGGCACCA+AGG 0.586854 4_3:+35256580 None:intergenic
TATGAGTTGATTAGAAGAGC+TGG 0.589543 4_3:-35256711 Msa0639410:CDS
ACCATTAGTCCCGATCATCC+GGG 0.591849 4_3:-35257090 Msa0639410:CDS
TTGGTGCTGTAAGCATGATA+AGG 0.592020 4_3:+35256940 None:intergenic
AAGGCACCAAGGTTACCATC+AGG 0.593630 4_3:+35256591 None:intergenic
TTAGGCCAAGATTTACCTGA+TGG 0.597509 4_3:-35256606 Msa0639410:CDS
ATCATGGATAGTACTGCGAT+CGG 0.609698 4_3:+35255884 None:intergenic
TCAGGTTTAACTGGTGCAGG+TGG 0.614618 4_3:-35255776 Msa0639410:CDS
TATAACTTGTACTAGTGGGT+AGG 0.614728 4_3:+35255440 None:intergenic
TCCAACTGAGAAGAGGATCA+TGG 0.614752 4_3:+35255868 None:intergenic
AATGGAAGGTTCTCATGTGA+GGG 0.615898 4_3:+35257162 None:intergenic
CTAATCAACTCATACACCAA+AGG 0.617873 4_3:+35256720 None:intergenic
TGGATCTTCCAAACCCTAGG+TGG 0.623341 4_3:-35255944 Msa0639410:CDS
AGATATCCATGATAAATGGA+AGG 0.625047 4_3:+35257148 None:intergenic
TGAAGCAACTGATGACATGA+AGG 0.627231 4_3:+35257277 None:intergenic
GCTGGTTGGGGTAATATGGG+TGG 0.628336 4_3:-35256765 Msa0639410:CDS
CTTGGTGCCTTACAGAAGAA+GGG 0.632453 4_3:-35256579 Msa0639410:CDS
GAGGAAGACTATGGACACTC+TGG 0.635045 4_3:-35255964 Msa0639410:CDS
GCAAGATTATTCGGCATGCG+AGG 0.636291 4_3:-35255983 Msa0639410:CDS
TATGCAGAAAACTCCACCTA+GGG 0.637321 4_3:+35255931 None:intergenic
TGGTAATGCAAATTTGGCTG+TGG 0.639028 4_3:+35257235 None:intergenic
CTCTGGATCTTCCAAACCCT+AGG 0.639945 4_3:-35255947 Msa0639410:CDS
TGATAACATGCAACCAACCA+GGG 0.648113 4_3:+35256649 None:intergenic
ATATGCAGAAAACTCCACCT+AGG 0.648525 4_3:+35255930 None:intergenic
AAATCCGACGTTGGTAACGC+CGG 0.653244 4_3:-35257050 Msa0639410:CDS
CTCAGCAATGACATTGTCAG+TGG 0.659860 4_3:+35256327 None:intergenic
TGCTAAAGACAAGTTCACAA+AGG 0.663793 4_3:-35256550 Msa0639410:intron
AACCTCACAAAATCCGACGT+TGG 0.668421 4_3:-35257059 Msa0639410:CDS
TTCTGAGAGAGGAAAGCGTG+TGG 0.674767 4_3:-35255492 Msa0639410:CDS
GTTGGAGCACAAGCTGCATG+TGG 0.687636 4_3:-35255851 Msa0639410:CDS
AGGAAAGCACAACCATAACG+TGG 0.709978 4_3:+35256960 None:intergenic
CAAAGGCATAATAAGCTGAG+TGG 0.711499 4_3:+35256737 None:intergenic
GACTCCGGCGTTACCAACGT+CGG 0.726114 4_3:+35257046 None:intergenic
AGGAACATGCTACCCCACTG+TGG 0.730068 4_3:+35255626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTAATAGTAAAATTAT+TGG - chr4_3:35255982-35256001 Msa0639410:CDS 10.0%
!! ATGTTTAATAGTAAAATTAT+TGG - chr4_3:35255982-35256001 Msa0639410:CDS 10.0%
!!! CAGATTATAATTTTAAATTG+TGG + chr4_3:35256596-35256615 None:intergenic 15.0%
!!! CACAATTTAAAATTATAATC+TGG - chr4_3:35256594-35256613 Msa0639410:CDS 15.0%
!! TAGAAGAAAAAAAAATTTGT+TGG + chr4_3:35256657-35256676 None:intergenic 15.0%
!! TCTAATGAATTAAATAAAAC+AGG - chr4_3:35256684-35256703 Msa0639410:CDS 15.0%
!!! CAGATTATAATTTTAAATTG+TGG + chr4_3:35256596-35256615 None:intergenic 15.0%
!!! CACAATTTAAAATTATAATC+TGG - chr4_3:35256594-35256613 Msa0639410:CDS 15.0%
!! TAGAAGAAAAAAAAATTTGT+TGG + chr4_3:35256657-35256676 None:intergenic 15.0%
!! TCTAATGAATTAAATAAAAC+AGG - chr4_3:35256684-35256703 Msa0639410:CDS 15.0%
!!! AAAATTATTGGACTTGTTAA+TGG - chr4_3:35255994-35256013 Msa0639410:CDS 20.0%
!!! GATTATGATTTTTTTTCTTC+AGG - chr4_3:35256361-35256380 Msa0639410:CDS 20.0%
!!! ACAAACTTTTTAAAAAACCT+AGG - chr4_3:35256626-35256645 Msa0639410:CDS 20.0%
!!! AAAATTATTGGACTTGTTAA+TGG - chr4_3:35255994-35256013 Msa0639410:CDS 20.0%
!!! GATTATGATTTTTTTTCTTC+AGG - chr4_3:35256361-35256380 Msa0639410:CDS 20.0%
!!! ACAAACTTTTTAAAAAACCT+AGG - chr4_3:35256626-35256645 Msa0639410:CDS 20.0%
! TGAAAAGAGTTTGAAAACTT+TGG + chr4_3:35255599-35255618 None:intergenic 25.0%
!! AGTTTTCAAACTCTTTTCAA+TGG - chr4_3:35255600-35255619 Msa0639410:CDS 25.0%
! AGAAAGATATCCATGATAAA+TGG + chr4_3:35255648-35255667 None:intergenic 25.0%
! CTAGTTAGTCACTTAATTTA+AGG - chr4_3:35256269-35256288 Msa0639410:intron 25.0%
!!! CTCATTGATTAATTGTTTTG+TGG + chr4_3:35256304-35256323 None:intergenic 25.0%
!!! TTTTTTTTCTTCAGGTTTTG+TGG - chr4_3:35256369-35256388 Msa0639410:CDS 25.0%
! GTAGATATATACAAATCTTG+AGG + chr4_3:35256537-35256556 None:intergenic 25.0%
! AAAGATCTTCTTGATATGAA+TGG + chr4_3:35256983-35257002 None:intergenic 25.0%
! TTCATATCAAGAAGATCTTT+AGG - chr4_3:35256983-35257002 Msa0639410:CDS 25.0%
!! AGATCTTTAGGAATTATATC+AGG - chr4_3:35256995-35257014 Msa0639410:CDS 25.0%
! AAATATCAACTGTGTTAATC+CGG + chr4_3:35257050-35257069 None:intergenic 25.0%
! TGAAAAGAGTTTGAAAACTT+TGG + chr4_3:35255599-35255618 None:intergenic 25.0%
!! AGTTTTCAAACTCTTTTCAA+TGG - chr4_3:35255600-35255619 Msa0639410:CDS 25.0%
! AGAAAGATATCCATGATAAA+TGG + chr4_3:35255648-35255667 None:intergenic 25.0%
! CTAGTTAGTCACTTAATTTA+AGG - chr4_3:35256269-35256288 Msa0639410:intron 25.0%
!!! CTCATTGATTAATTGTTTTG+TGG + chr4_3:35256304-35256323 None:intergenic 25.0%
!!! TTTTTTTTCTTCAGGTTTTG+TGG - chr4_3:35256369-35256388 Msa0639410:CDS 25.0%
! GTAGATATATACAAATCTTG+AGG + chr4_3:35256537-35256556 None:intergenic 25.0%
! AAAGATCTTCTTGATATGAA+TGG + chr4_3:35256983-35257002 None:intergenic 25.0%
! TTCATATCAAGAAGATCTTT+AGG - chr4_3:35256983-35257002 Msa0639410:CDS 25.0%
!! AGATCTTTAGGAATTATATC+AGG - chr4_3:35256995-35257014 Msa0639410:CDS 25.0%
! AAATATCAACTGTGTTAATC+CGG + chr4_3:35257050-35257069 None:intergenic 25.0%
! ATCAACTGGTAATGCAAATT+TGG + chr4_3:35255563-35255582 None:intergenic 30.0%
AGATATCCATGATAAATGGA+AGG + chr4_3:35255644-35255663 None:intergenic 30.0%
!! TTTCAGGTAGTATTTTCTCA+AGG - chr4_3:35255773-35255792 Msa0639410:CDS 30.0%
AATGACATACAAAACACTGT+TGG + chr4_3:35255871-35255890 None:intergenic 30.0%
ATAGCAGTTAGGTTTATGAT+TGG - chr4_3:35255913-35255932 Msa0639410:CDS 30.0%
!! GTTTATGATTGGTTTCTCTT+TGG - chr4_3:35255924-35255943 Msa0639410:CDS 30.0%
CATTTGTTTCATGCCAATAT+TGG - chr4_3:35255950-35255969 Msa0639410:CDS 30.0%
ACATAGTACTCATCCAATAT+TGG + chr4_3:35255966-35255985 None:intergenic 30.0%
!!! GGTATTTTGGTCTTAACATT+AGG - chr4_3:35256165-35256184 Msa0639410:intron 30.0%
GGTATGCTATAACAAATTAC+AGG - chr4_3:35256390-35256409 Msa0639410:CDS 30.0%
CTATAACAAATTACAGGACA+TGG - chr4_3:35256396-35256415 Msa0639410:CDS 30.0%
GGAATTATATCAGGTTTAAC+TGG - chr4_3:35257004-35257023 Msa0639410:CDS 30.0%
! TCAAAATTTTCAACAGCTTC+AGG - chr4_3:35257079-35257098 Msa0639410:CDS 30.0%
! ATTTGTTCATTTTCCACAGT+GGG - chr4_3:35257150-35257169 Msa0639410:CDS 30.0%
! TCTTCATTGATCTCTTTTGA+AGG + chr4_3:35257193-35257212 None:intergenic 30.0%
AACACTATTACACTTCTGAA+TGG - chr4_3:35257212-35257231 Msa0639410:CDS 30.0%
AATGAAGATGAAGTACAGAA+AGG - chr4_3:35257235-35257254 Msa0639410:CDS 30.0%
ATGAAGATGAAGTACAGAAA+GGG - chr4_3:35257236-35257255 Msa0639410:CDS 30.0%
! ATCAACTGGTAATGCAAATT+TGG + chr4_3:35255563-35255582 None:intergenic 30.0%
AGATATCCATGATAAATGGA+AGG + chr4_3:35255644-35255663 None:intergenic 30.0%
!! TTTCAGGTAGTATTTTCTCA+AGG - chr4_3:35255773-35255792 Msa0639410:CDS 30.0%
AATGACATACAAAACACTGT+TGG + chr4_3:35255871-35255890 None:intergenic 30.0%
ATAGCAGTTAGGTTTATGAT+TGG - chr4_3:35255913-35255932 Msa0639410:CDS 30.0%
!! GTTTATGATTGGTTTCTCTT+TGG - chr4_3:35255924-35255943 Msa0639410:CDS 30.0%
CATTTGTTTCATGCCAATAT+TGG - chr4_3:35255950-35255969 Msa0639410:CDS 30.0%
ACATAGTACTCATCCAATAT+TGG + chr4_3:35255966-35255985 None:intergenic 30.0%
!!! GGTATTTTGGTCTTAACATT+AGG - chr4_3:35256165-35256184 Msa0639410:intron 30.0%
GGTATGCTATAACAAATTAC+AGG - chr4_3:35256390-35256409 Msa0639410:CDS 30.0%
CTATAACAAATTACAGGACA+TGG - chr4_3:35256396-35256415 Msa0639410:CDS 30.0%
GGAATTATATCAGGTTTAAC+TGG - chr4_3:35257004-35257023 Msa0639410:CDS 30.0%
! TCAAAATTTTCAACAGCTTC+AGG - chr4_3:35257079-35257098 Msa0639410:CDS 30.0%
! ATTTGTTCATTTTCCACAGT+GGG - chr4_3:35257150-35257169 Msa0639410:CDS 30.0%
! TCTTCATTGATCTCTTTTGA+AGG + chr4_3:35257193-35257212 None:intergenic 30.0%
AACACTATTACACTTCTGAA+TGG - chr4_3:35257212-35257231 Msa0639410:CDS 30.0%
AATGAAGATGAAGTACAGAA+AGG - chr4_3:35257235-35257254 Msa0639410:CDS 30.0%
ATGAAGATGAAGTACAGAAA+GGG - chr4_3:35257236-35257255 Msa0639410:CDS 30.0%
GATTTGTGTTCAGAATCAAC+TGG + chr4_3:35255577-35255596 None:intergenic 35.0%
TGAGAACCTTCCATTTATCA+TGG - chr4_3:35255635-35255654 Msa0639410:CDS 35.0%
! TCATTTGTTGAAAATGCTGC+TGG - chr4_3:35255886-35255905 Msa0639410:CDS 35.0%
CTAATCAACTCATACACCAA+AGG + chr4_3:35256072-35256091 None:intergenic 35.0%
!! TATGAGTTGATTAGAAGAGC+TGG - chr4_3:35256078-35256097 Msa0639410:CDS 35.0%
!!! AGAATTGCCTTTTTTATCCC+TGG - chr4_3:35256123-35256142 Msa0639410:intron 35.0%
! GCATGTTATCATGGGTATTT+TGG - chr4_3:35256152-35256171 Msa0639410:intron 35.0%
AACATTACCCTTCTTCTGTA+AGG + chr4_3:35256220-35256239 None:intergenic 35.0%
TGCTAAAGACAAGTTCACAA+AGG - chr4_3:35256239-35256258 Msa0639410:intron 35.0%
! TGGATTTTTGCACTGCTTTA+TGG - chr4_3:35256416-35256435 Msa0639410:intron 35.0%
ACTGCTTTATGGTTACTCTA+TGG - chr4_3:35256427-35256446 Msa0639410:intron 35.0%
CTGCTTTATGGTTACTCTAT+GGG - chr4_3:35256428-35256447 Msa0639410:intron 35.0%
! TTGCTGAGTATTTCTATGAC+AGG - chr4_3:35256477-35256496 Msa0639410:intron 35.0%
TTAAATTGCAACTGCAGTTG+CGG - chr4_3:35256569-35256588 Msa0639410:CDS 35.0%
!! AAAATTTGTTGGAGTCTCCT+AGG + chr4_3:35256646-35256665 None:intergenic 35.0%
AACTAAGTTTGCCATTCCAA+AGG + chr4_3:35256750-35256769 None:intergenic 35.0%
GATGTTGCAGCAAGATTATT+CGG - chr4_3:35256797-35256816 Msa0639410:CDS 35.0%
GGAAAATGAACAAATGCAAC+AGG + chr4_3:35257145-35257164 None:intergenic 35.0%
! CATTTGTTCATTTTCCACAG+TGG - chr4_3:35257149-35257168 Msa0639410:CDS 35.0%
! TTTGTTCATTTTCCACAGTG+GGG - chr4_3:35257151-35257170 Msa0639410:CDS 35.0%
!! TCATTGATCTCTTTTGAAGG+TGG + chr4_3:35257190-35257209 None:intergenic 35.0%
GATTTGTGTTCAGAATCAAC+TGG + chr4_3:35255577-35255596 None:intergenic 35.0%
TGAGAACCTTCCATTTATCA+TGG - chr4_3:35255635-35255654 Msa0639410:CDS 35.0%
! TCATTTGTTGAAAATGCTGC+TGG - chr4_3:35255886-35255905 Msa0639410:CDS 35.0%
CTAATCAACTCATACACCAA+AGG + chr4_3:35256072-35256091 None:intergenic 35.0%
!! TATGAGTTGATTAGAAGAGC+TGG - chr4_3:35256078-35256097 Msa0639410:CDS 35.0%
!!! AGAATTGCCTTTTTTATCCC+TGG - chr4_3:35256123-35256142 Msa0639410:intron 35.0%
! GCATGTTATCATGGGTATTT+TGG - chr4_3:35256152-35256171 Msa0639410:intron 35.0%
AACATTACCCTTCTTCTGTA+AGG + chr4_3:35256220-35256239 None:intergenic 35.0%
TGCTAAAGACAAGTTCACAA+AGG - chr4_3:35256239-35256258 Msa0639410:intron 35.0%
! TGGATTTTTGCACTGCTTTA+TGG - chr4_3:35256416-35256435 Msa0639410:intron 35.0%
ACTGCTTTATGGTTACTCTA+TGG - chr4_3:35256427-35256446 Msa0639410:intron 35.0%
CTGCTTTATGGTTACTCTAT+GGG - chr4_3:35256428-35256447 Msa0639410:intron 35.0%
! TTGCTGAGTATTTCTATGAC+AGG - chr4_3:35256477-35256496 Msa0639410:intron 35.0%
TTAAATTGCAACTGCAGTTG+CGG - chr4_3:35256569-35256588 Msa0639410:CDS 35.0%
!! AAAATTTGTTGGAGTCTCCT+AGG + chr4_3:35256646-35256665 None:intergenic 35.0%
AACTAAGTTTGCCATTCCAA+AGG + chr4_3:35256750-35256769 None:intergenic 35.0%
GATGTTGCAGCAAGATTATT+CGG - chr4_3:35256797-35256816 Msa0639410:CDS 35.0%
GGAAAATGAACAAATGCAAC+AGG + chr4_3:35257145-35257164 None:intergenic 35.0%
! CATTTGTTCATTTTCCACAG+TGG - chr4_3:35257149-35257168 Msa0639410:CDS 35.0%
! TTTGTTCATTTTCCACAGTG+GGG - chr4_3:35257151-35257170 Msa0639410:CDS 35.0%
!! TCATTGATCTCTTTTGAAGG+TGG + chr4_3:35257190-35257209 None:intergenic 35.0%
TGAAGCAACTGATGACATGA+AGG + chr4_3:35255515-35255534 None:intergenic 40.0%
AATTTGGCTGTGGTATCAGT+TGG + chr4_3:35255547-35255566 None:intergenic 40.0%
! TGGTAATGCAAATTTGGCTG+TGG + chr4_3:35255557-35255576 None:intergenic 40.0%
AATGGAAGGTTCTCATGTGA+GGG + chr4_3:35255630-35255649 None:intergenic 40.0%
AAATGGAAGGTTCTCATGTG+AGG + chr4_3:35255631-35255650 None:intergenic 40.0%
! TATTTTCTCAAGGCTCGCAA+TGG - chr4_3:35255783-35255802 Msa0639410:CDS 40.0%
! ATTTTCTCAAGGCTCGCAAT+GGG - chr4_3:35255784-35255803 Msa0639410:CDS 40.0%
GGTGCAATTTGTGACCTATT+AGG - chr4_3:35255805-35255824 Msa0639410:CDS 40.0%
AACCATAACGTGGACCTAAT+AGG + chr4_3:35255822-35255841 None:intergenic 40.0%
!! TTGGTGCTGTAAGCATGATA+AGG + chr4_3:35255852-35255871 None:intergenic 40.0%
! CTGCTGGTTATATAGCAGTT+AGG - chr4_3:35255902-35255921 Msa0639410:CDS 40.0%
! CAAAGGCATAATAAGCTGAG+TGG + chr4_3:35256055-35256074 None:intergenic 40.0%
CACTCAGCTTATTATGCCTT+TGG - chr4_3:35256053-35256072 Msa0639410:CDS 40.0%
!!! TTGCCTTTTTTATCCCTGGT+TGG - chr4_3:35256127-35256146 Msa0639410:intron 40.0%
CAACCAACCAGGGATAAAAA+AGG + chr4_3:35256133-35256152 None:intergenic 40.0%
TGATAACATGCAACCAACCA+GGG + chr4_3:35256143-35256162 None:intergenic 40.0%
ATGATAACATGCAACCAACC+AGG + chr4_3:35256144-35256163 None:intergenic 40.0%
! TGGTTGGTTGCATGTTATCA+TGG - chr4_3:35256143-35256162 Msa0639410:intron 40.0%
! GGTTGGTTGCATGTTATCAT+GGG - chr4_3:35256144-35256163 Msa0639410:intron 40.0%
TTAGGCCAAGATTTACCTGA+TGG - chr4_3:35256183-35256202 Msa0639410:intron 40.0%
GGTTACCATCAGGTAAATCT+TGG + chr4_3:35256191-35256210 None:intergenic 40.0%
GATTTACCTGATGGTAACCT+TGG - chr4_3:35256192-35256211 Msa0639410:intron 40.0%
AACTTAGTTGCTCGTCCATT+CGG - chr4_3:35256761-35256780 Msa0639410:CDS 40.0%
TATGCAGAAAACTCCACCTA+GGG + chr4_3:35256861-35256880 None:intergenic 40.0%
ATATGCAGAAAACTCCACCT+AGG + chr4_3:35256862-35256881 None:intergenic 40.0%
! TAGGTGGAGTTTTCTGCATA+TGG - chr4_3:35256861-35256880 Msa0639410:CDS 40.0%
! GGAGTTTTCTGCATATGGTT+AGG - chr4_3:35256866-35256885 Msa0639410:CDS 40.0%
ATCATGGATAGTACTGCGAT+CGG + chr4_3:35256908-35256927 None:intergenic 40.0%
ATATCAGGTTTAACTGGTGC+AGG - chr4_3:35257010-35257029 Msa0639410:CDS 40.0%
!! TGATCTCTTTTGAAGGTGGA+AGG + chr4_3:35257186-35257205 None:intergenic 40.0%
TTCTCAGCAAACCTAAGACT+TGG + chr4_3:35257271-35257290 None:intergenic 40.0%
! TAGTGGGTAGGAGTTGTATT+TGG + chr4_3:35257340-35257359 None:intergenic 40.0%
TGAAGCAACTGATGACATGA+AGG + chr4_3:35255515-35255534 None:intergenic 40.0%
AATTTGGCTGTGGTATCAGT+TGG + chr4_3:35255547-35255566 None:intergenic 40.0%
! TGGTAATGCAAATTTGGCTG+TGG + chr4_3:35255557-35255576 None:intergenic 40.0%
AATGGAAGGTTCTCATGTGA+GGG + chr4_3:35255630-35255649 None:intergenic 40.0%
AAATGGAAGGTTCTCATGTG+AGG + chr4_3:35255631-35255650 None:intergenic 40.0%
! TATTTTCTCAAGGCTCGCAA+TGG - chr4_3:35255783-35255802 Msa0639410:CDS 40.0%
! ATTTTCTCAAGGCTCGCAAT+GGG - chr4_3:35255784-35255803 Msa0639410:CDS 40.0%
GGTGCAATTTGTGACCTATT+AGG - chr4_3:35255805-35255824 Msa0639410:CDS 40.0%
AACCATAACGTGGACCTAAT+AGG + chr4_3:35255822-35255841 None:intergenic 40.0%
!! TTGGTGCTGTAAGCATGATA+AGG + chr4_3:35255852-35255871 None:intergenic 40.0%
! CTGCTGGTTATATAGCAGTT+AGG - chr4_3:35255902-35255921 Msa0639410:CDS 40.0%
! CAAAGGCATAATAAGCTGAG+TGG + chr4_3:35256055-35256074 None:intergenic 40.0%
CACTCAGCTTATTATGCCTT+TGG - chr4_3:35256053-35256072 Msa0639410:CDS 40.0%
!!! TTGCCTTTTTTATCCCTGGT+TGG - chr4_3:35256127-35256146 Msa0639410:intron 40.0%
CAACCAACCAGGGATAAAAA+AGG + chr4_3:35256133-35256152 None:intergenic 40.0%
TGATAACATGCAACCAACCA+GGG + chr4_3:35256143-35256162 None:intergenic 40.0%
ATGATAACATGCAACCAACC+AGG + chr4_3:35256144-35256163 None:intergenic 40.0%
! TGGTTGGTTGCATGTTATCA+TGG - chr4_3:35256143-35256162 Msa0639410:intron 40.0%
! GGTTGGTTGCATGTTATCAT+GGG - chr4_3:35256144-35256163 Msa0639410:intron 40.0%
TTAGGCCAAGATTTACCTGA+TGG - chr4_3:35256183-35256202 Msa0639410:intron 40.0%
GGTTACCATCAGGTAAATCT+TGG + chr4_3:35256191-35256210 None:intergenic 40.0%
GATTTACCTGATGGTAACCT+TGG - chr4_3:35256192-35256211 Msa0639410:intron 40.0%
AACTTAGTTGCTCGTCCATT+CGG - chr4_3:35256761-35256780 Msa0639410:CDS 40.0%
TATGCAGAAAACTCCACCTA+GGG + chr4_3:35256861-35256880 None:intergenic 40.0%
ATATGCAGAAAACTCCACCT+AGG + chr4_3:35256862-35256881 None:intergenic 40.0%
! TAGGTGGAGTTTTCTGCATA+TGG - chr4_3:35256861-35256880 Msa0639410:CDS 40.0%
! GGAGTTTTCTGCATATGGTT+AGG - chr4_3:35256866-35256885 Msa0639410:CDS 40.0%
ATCATGGATAGTACTGCGAT+CGG + chr4_3:35256908-35256927 None:intergenic 40.0%
ATATCAGGTTTAACTGGTGC+AGG - chr4_3:35257010-35257029 Msa0639410:CDS 40.0%
!! TGATCTCTTTTGAAGGTGGA+AGG + chr4_3:35257186-35257205 None:intergenic 40.0%
TTCTCAGCAAACCTAAGACT+TGG + chr4_3:35257271-35257290 None:intergenic 40.0%
! TAGTGGGTAGGAGTTGTATT+TGG + chr4_3:35257340-35257359 None:intergenic 40.0%
TCTTCCAGTTACTCCATGCA+TGG + chr4_3:35255485-35255504 None:intergenic 45.0%
GTCATCAGTTGCTTCACCAA+TGG - chr4_3:35255519-35255538 Msa0639410:CDS 45.0%
GTGGTATCAGTTGGAACCAT+TGG + chr4_3:35255538-35255557 None:intergenic 45.0%
TTAAGGTTGTCCCGGATGAT+CGG + chr4_3:35255712-35255731 None:intergenic 45.0%
TTGTGAGGTTAAGGTTGTCC+CGG + chr4_3:35255720-35255739 None:intergenic 45.0%
! CGTCGGATTTTGTGAGGTTA+AGG + chr4_3:35255729-35255748 None:intergenic 45.0%
AACCTCACAAAATCCGACGT+TGG - chr4_3:35255730-35255749 Msa0639410:CDS 45.0%
! TACCAACGTCGGATTTTGTG+AGG + chr4_3:35255735-35255754 None:intergenic 45.0%
GACCTATTAGGTCCACGTTA+TGG - chr4_3:35255817-35255836 Msa0639410:CDS 45.0%
! AGGAAAGCACAACCATAACG+TGG + chr4_3:35255832-35255851 None:intergenic 45.0%
CTTGTTAATGGTACTGCTGC+TGG - chr4_3:35256006-35256025 Msa0639410:CDS 45.0%
TTAATGGTACTGCTGCTGGT+TGG - chr4_3:35256010-35256029 Msa0639410:CDS 45.0%
! TAATGGTACTGCTGCTGGTT+GGG - chr4_3:35256011-35256030 Msa0639410:CDS 45.0%
GCAATTCTCCAAGCAGTGAA+AGG + chr4_3:35256111-35256130 None:intergenic 45.0%
!! CTTGGTGCCTTACAGAAGAA+GGG - chr4_3:35256210-35256229 Msa0639410:intron 45.0%
CTCAGCAATGACATTGTCAG+TGG + chr4_3:35256465-35256484 None:intergenic 45.0%
AACCTAAAGCTACACACAGC+TGG - chr4_3:35256710-35256729 Msa0639410:CDS 45.0%
TTCCAGCTGTGTGTAGCTTT+AGG + chr4_3:35256715-35256734 None:intergenic 45.0%
GGAATCATTGCTGCATCCTT+TGG - chr4_3:35256731-35256750 Msa0639410:CDS 45.0%
! CATTGCTGCATCCTTTGGAA+TGG - chr4_3:35256736-35256755 Msa0639410:CDS 45.0%
AGAAAACTCCACCTAGGGTT+TGG + chr4_3:35256856-35256875 None:intergenic 45.0%
TCCATGATCCTCTTCTCAGT+TGG - chr4_3:35256920-35256939 Msa0639410:CDS 45.0%
TCCAACTGAGAAGAGGATCA+TGG + chr4_3:35256924-35256943 None:intergenic 45.0%
CAACAGCTTCAGGTCTTTCA+TGG - chr4_3:35257089-35257108 Msa0639410:CDS 45.0%
AGCTTCAGGTCTTTCATGGA+TGG - chr4_3:35257093-35257112 Msa0639410:CDS 45.0%
GCTTCAGGTCTTTCATGGAT+GGG - chr4_3:35257094-35257113 Msa0639410:CDS 45.0%
TGGATGGGTGCAATGATTGT+TGG - chr4_3:35257109-35257128 Msa0639410:CDS 45.0%
GGTTGCATCAACCAAGTCTT+AGG - chr4_3:35257257-35257276 Msa0639410:CDS 45.0%
!! GAGAATAGTCGTTCTGAGAG+AGG - chr4_3:35257286-35257305 Msa0639410:CDS 45.0%
TGGGTAGGAGTTGTATTTGG+TGG + chr4_3:35257337-35257356 None:intergenic 45.0%
TCTTCCAGTTACTCCATGCA+TGG + chr4_3:35255485-35255504 None:intergenic 45.0%
GTCATCAGTTGCTTCACCAA+TGG - chr4_3:35255519-35255538 Msa0639410:CDS 45.0%
GTGGTATCAGTTGGAACCAT+TGG + chr4_3:35255538-35255557 None:intergenic 45.0%
TTAAGGTTGTCCCGGATGAT+CGG + chr4_3:35255712-35255731 None:intergenic 45.0%
TTGTGAGGTTAAGGTTGTCC+CGG + chr4_3:35255720-35255739 None:intergenic 45.0%
! CGTCGGATTTTGTGAGGTTA+AGG + chr4_3:35255729-35255748 None:intergenic 45.0%
AACCTCACAAAATCCGACGT+TGG - chr4_3:35255730-35255749 Msa0639410:CDS 45.0%
! TACCAACGTCGGATTTTGTG+AGG + chr4_3:35255735-35255754 None:intergenic 45.0%
GACCTATTAGGTCCACGTTA+TGG - chr4_3:35255817-35255836 Msa0639410:CDS 45.0%
! AGGAAAGCACAACCATAACG+TGG + chr4_3:35255832-35255851 None:intergenic 45.0%
CTTGTTAATGGTACTGCTGC+TGG - chr4_3:35256006-35256025 Msa0639410:CDS 45.0%
TTAATGGTACTGCTGCTGGT+TGG - chr4_3:35256010-35256029 Msa0639410:CDS 45.0%
! TAATGGTACTGCTGCTGGTT+GGG - chr4_3:35256011-35256030 Msa0639410:CDS 45.0%
GCAATTCTCCAAGCAGTGAA+AGG + chr4_3:35256111-35256130 None:intergenic 45.0%
!! CTTGGTGCCTTACAGAAGAA+GGG - chr4_3:35256210-35256229 Msa0639410:intron 45.0%
CTCAGCAATGACATTGTCAG+TGG + chr4_3:35256465-35256484 None:intergenic 45.0%
AACCTAAAGCTACACACAGC+TGG - chr4_3:35256710-35256729 Msa0639410:CDS 45.0%
TTCCAGCTGTGTGTAGCTTT+AGG + chr4_3:35256715-35256734 None:intergenic 45.0%
GGAATCATTGCTGCATCCTT+TGG - chr4_3:35256731-35256750 Msa0639410:CDS 45.0%
! CATTGCTGCATCCTTTGGAA+TGG - chr4_3:35256736-35256755 Msa0639410:CDS 45.0%
AGAAAACTCCACCTAGGGTT+TGG + chr4_3:35256856-35256875 None:intergenic 45.0%
TCCATGATCCTCTTCTCAGT+TGG - chr4_3:35256920-35256939 Msa0639410:CDS 45.0%
TCCAACTGAGAAGAGGATCA+TGG + chr4_3:35256924-35256943 None:intergenic 45.0%
CAACAGCTTCAGGTCTTTCA+TGG - chr4_3:35257089-35257108 Msa0639410:CDS 45.0%
AGCTTCAGGTCTTTCATGGA+TGG - chr4_3:35257093-35257112 Msa0639410:CDS 45.0%
GCTTCAGGTCTTTCATGGAT+GGG - chr4_3:35257094-35257113 Msa0639410:CDS 45.0%
TGGATGGGTGCAATGATTGT+TGG - chr4_3:35257109-35257128 Msa0639410:CDS 45.0%
GGTTGCATCAACCAAGTCTT+AGG - chr4_3:35257257-35257276 Msa0639410:CDS 45.0%
!! GAGAATAGTCGTTCTGAGAG+AGG - chr4_3:35257286-35257305 Msa0639410:CDS 45.0%
TGGGTAGGAGTTGTATTTGG+TGG + chr4_3:35257337-35257356 None:intergenic 45.0%
GCTGATATTGAGGGTTCACC+TGG - chr4_3:35255454-35255473 Msa0639410:CDS 50.0%
AGCTCCATGCATGGAGTAAC+TGG - chr4_3:35255478-35255497 Msa0639410:CDS 50.0%
CTGTTTCGTCTCGACATTCG+CGG - chr4_3:35255672-35255691 Msa0639410:CDS 50.0%
CACCATTAGTCCCGATCATC+CGG - chr4_3:35255698-35255717 Msa0639410:CDS 50.0%
ACCATTAGTCCCGATCATCC+GGG - chr4_3:35255699-35255718 Msa0639410:CDS 50.0%
TAAGGTTGTCCCGGATGATC+GGG + chr4_3:35255711-35255730 None:intergenic 50.0%
!! AAATCCGACGTTGGTAACGC+CGG - chr4_3:35255739-35255758 Msa0639410:CDS 50.0%
! AATGGTACTGCTGCTGGTTG+GGG - chr4_3:35256012-35256031 Msa0639410:CDS 50.0%
! TGCTGCTGGTTGGGGTAATA+TGG - chr4_3:35256020-35256039 Msa0639410:CDS 50.0%
! GCTGCTGGTTGGGGTAATAT+GGG - chr4_3:35256021-35256040 Msa0639410:CDS 50.0%
GTTGGGGTAATATGGGTGGT+GGG - chr4_3:35256028-35256047 Msa0639410:CDS 50.0%
TTGGGGTAATATGGGTGGTG+GGG - chr4_3:35256029-35256048 Msa0639410:CDS 50.0%
! GTGCTACTCCTTTCACTGCT+TGG - chr4_3:35256100-35256119 Msa0639410:intron 50.0%
! AAGGCACCAAGGTTACCATC+AGG + chr4_3:35256201-35256220 None:intergenic 50.0%
! CCTTCTTCTGTAAGGCACCA+AGG + chr4_3:35256212-35256231 None:intergenic 50.0%
!! CCTTGGTGCCTTACAGAAGA+AGG - chr4_3:35256209-35256228 Msa0639410:intron 50.0%
TTAGTTGCTCGTCCATTCGG+CGG - chr4_3:35256764-35256783 Msa0639410:CDS 50.0%
TCTGATGCATAACCGCCGAA+TGG + chr4_3:35256779-35256798 None:intergenic 50.0%
GCAAGATTATTCGGCATGCG+AGG - chr4_3:35256806-35256825 Msa0639410:CDS 50.0%
GAGGAAGACTATGGACACTC+TGG - chr4_3:35256825-35256844 Msa0639410:CDS 50.0%
CTCTGGATCTTCCAAACCCT+AGG - chr4_3:35256842-35256861 Msa0639410:CDS 50.0%
TGGATCTTCCAAACCCTAGG+TGG - chr4_3:35256845-35256864 Msa0639410:CDS 50.0%
CTTGTGCTCCAACTGAGAAG+AGG + chr4_3:35256931-35256950 None:intergenic 50.0%
GCTGCATGTGGTGCAACATT+TGG - chr4_3:35256950-35256969 Msa0639410:CDS 50.0%
TCAGGTTTAACTGGTGCAGG+TGG - chr4_3:35257013-35257032 Msa0639410:CDS 50.0%
ACTGGTGCAGGTGGAAACTT+TGG - chr4_3:35257022-35257041 Msa0639410:CDS 50.0%
! GCAGGTGGAAACTTTGGTTC+CGG - chr4_3:35257028-35257047 Msa0639410:CDS 50.0%
! TTCTGAGAGAGGAAAGCGTG+TGG - chr4_3:35257297-35257316 Msa0639410:CDS 50.0%
GCTGATATTGAGGGTTCACC+TGG - chr4_3:35255454-35255473 Msa0639410:CDS 50.0%
AGCTCCATGCATGGAGTAAC+TGG - chr4_3:35255478-35255497 Msa0639410:CDS 50.0%
CTGTTTCGTCTCGACATTCG+CGG - chr4_3:35255672-35255691 Msa0639410:CDS 50.0%
CACCATTAGTCCCGATCATC+CGG - chr4_3:35255698-35255717 Msa0639410:CDS 50.0%
ACCATTAGTCCCGATCATCC+GGG - chr4_3:35255699-35255718 Msa0639410:CDS 50.0%
TAAGGTTGTCCCGGATGATC+GGG + chr4_3:35255711-35255730 None:intergenic 50.0%
!! AAATCCGACGTTGGTAACGC+CGG - chr4_3:35255739-35255758 Msa0639410:CDS 50.0%
! AATGGTACTGCTGCTGGTTG+GGG - chr4_3:35256012-35256031 Msa0639410:CDS 50.0%
! TGCTGCTGGTTGGGGTAATA+TGG - chr4_3:35256020-35256039 Msa0639410:CDS 50.0%
! GCTGCTGGTTGGGGTAATAT+GGG - chr4_3:35256021-35256040 Msa0639410:CDS 50.0%
GTTGGGGTAATATGGGTGGT+GGG - chr4_3:35256028-35256047 Msa0639410:CDS 50.0%
TTGGGGTAATATGGGTGGTG+GGG - chr4_3:35256029-35256048 Msa0639410:CDS 50.0%
! GTGCTACTCCTTTCACTGCT+TGG - chr4_3:35256100-35256119 Msa0639410:intron 50.0%
! AAGGCACCAAGGTTACCATC+AGG + chr4_3:35256201-35256220 None:intergenic 50.0%
! CCTTCTTCTGTAAGGCACCA+AGG + chr4_3:35256212-35256231 None:intergenic 50.0%
!! CCTTGGTGCCTTACAGAAGA+AGG - chr4_3:35256209-35256228 Msa0639410:intron 50.0%
TTAGTTGCTCGTCCATTCGG+CGG - chr4_3:35256764-35256783 Msa0639410:CDS 50.0%
TCTGATGCATAACCGCCGAA+TGG + chr4_3:35256779-35256798 None:intergenic 50.0%
GCAAGATTATTCGGCATGCG+AGG - chr4_3:35256806-35256825 Msa0639410:CDS 50.0%
GAGGAAGACTATGGACACTC+TGG - chr4_3:35256825-35256844 Msa0639410:CDS 50.0%
CTCTGGATCTTCCAAACCCT+AGG - chr4_3:35256842-35256861 Msa0639410:CDS 50.0%
TGGATCTTCCAAACCCTAGG+TGG - chr4_3:35256845-35256864 Msa0639410:CDS 50.0%
CTTGTGCTCCAACTGAGAAG+AGG + chr4_3:35256931-35256950 None:intergenic 50.0%
GCTGCATGTGGTGCAACATT+TGG - chr4_3:35256950-35256969 Msa0639410:CDS 50.0%
TCAGGTTTAACTGGTGCAGG+TGG - chr4_3:35257013-35257032 Msa0639410:CDS 50.0%
ACTGGTGCAGGTGGAAACTT+TGG - chr4_3:35257022-35257041 Msa0639410:CDS 50.0%
! GCAGGTGGAAACTTTGGTTC+CGG - chr4_3:35257028-35257047 Msa0639410:CDS 50.0%
! TTCTGAGAGAGGAAAGCGTG+TGG - chr4_3:35257297-35257316 Msa0639410:CDS 50.0%
TCACCTGGAAGCTCCATGCA+TGG - chr4_3:35255469-35255488 Msa0639410:CDS 55.0%
ACTCCATGCATGGAGCTTCC+AGG + chr4_3:35255475-35255494 None:intergenic 55.0%
CGCGAATGTCGAGACGAAAC+AGG + chr4_3:35255674-35255693 None:intergenic 55.0%
TCCCGGATGATCGGGACTAA+TGG + chr4_3:35255703-35255722 None:intergenic 55.0%
ACCTGAAACCGAAGCGACTC+CGG + chr4_3:35255761-35255780 None:intergenic 55.0%
GCTGGTTGGGGTAATATGGG+TGG - chr4_3:35256024-35256043 Msa0639410:CDS 55.0%
GGTTGGGGTAATATGGGTGG+TGG - chr4_3:35256027-35256046 Msa0639410:CDS 55.0%
TCGGCATGCGAGGAAGACTA+TGG - chr4_3:35256816-35256835 Msa0639410:CDS 55.0%
GTTGGAGCACAAGCTGCATG+TGG - chr4_3:35256938-35256957 Msa0639410:CDS 55.0%
AGGAACATGCTACCCCACTG+TGG + chr4_3:35257166-35257185 None:intergenic 55.0%
TCACCTGGAAGCTCCATGCA+TGG - chr4_3:35255469-35255488 Msa0639410:CDS 55.0%
ACTCCATGCATGGAGCTTCC+AGG + chr4_3:35255475-35255494 None:intergenic 55.0%
CGCGAATGTCGAGACGAAAC+AGG + chr4_3:35255674-35255693 None:intergenic 55.0%
TCCCGGATGATCGGGACTAA+TGG + chr4_3:35255703-35255722 None:intergenic 55.0%
ACCTGAAACCGAAGCGACTC+CGG + chr4_3:35255761-35255780 None:intergenic 55.0%
GCTGGTTGGGGTAATATGGG+TGG - chr4_3:35256024-35256043 Msa0639410:CDS 55.0%
GGTTGGGGTAATATGGGTGG+TGG - chr4_3:35256027-35256046 Msa0639410:CDS 55.0%
TCGGCATGCGAGGAAGACTA+TGG - chr4_3:35256816-35256835 Msa0639410:CDS 55.0%
GTTGGAGCACAAGCTGCATG+TGG - chr4_3:35256938-35256957 Msa0639410:CDS 55.0%
AGGAACATGCTACCCCACTG+TGG + chr4_3:35257166-35257185 None:intergenic 55.0%
GACTCCGGCGTTACCAACGT+CGG + chr4_3:35255746-35255765 None:intergenic 60.0%
! TGGTAACGCCGGAGTCGCTT+CGG - chr4_3:35255750-35255769 Msa0639410:CDS 60.0%
GACTCCGGCGTTACCAACGT+CGG + chr4_3:35255746-35255765 None:intergenic 60.0%
! TGGTAACGCCGGAGTCGCTT+CGG - chr4_3:35255750-35255769 Msa0639410:CDS 60.0%
GCCGGAGTCGCTTCGGTTTC+AGG - chr4_3:35255757-35255776 Msa0639410:CDS 65.0%
GCCGGAGTCGCTTCGGTTTC+AGG - chr4_3:35255757-35255776 Msa0639410:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 35255451 35257360 35255451 ID=Msa0639410;Name=Msa0639410
chr4_3 mRNA 35255451 35257360 35255451 ID=Msa0639410-mRNA-1;Parent=Msa0639410;Name=Msa0639410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|526
chr4_3 exon 35256551 35257360 35256551 ID=Msa0639410-mRNA-1:exon:8284;Parent=Msa0639410-mRNA-1
chr4_3 exon 35256313 35256428 35256313 ID=Msa0639410-mRNA-1:exon:8283;Parent=Msa0639410-mRNA-1
chr4_3 exon 35255451 35256105 35255451 ID=Msa0639410-mRNA-1:exon:8282;Parent=Msa0639410-mRNA-1
chr4_3 CDS 35256551 35257360 35256551 ID=Msa0639410-mRNA-1:cds;Parent=Msa0639410-mRNA-1
chr4_3 CDS 35256313 35256428 35256313 ID=Msa0639410-mRNA-1:cds;Parent=Msa0639410-mRNA-1
chr4_3 CDS 35255451 35256105 35255451 ID=Msa0639410-mRNA-1:cds;Parent=Msa0639410-mRNA-1
Gene Sequence

>Msa0639410

ATGGCTGATATTGAGGGTTCACCTGGAAGCTCCATGCATGGAGTAACTGGAAGAGAACAAACCTTCATGTCATCAGTTGCTTCACCAATGGTTCCAACTGATACCACAGCCAAATTTGCATTACCAGTTGATTCTGAACACAAATCCAAAGTTTTCAAACTCTTTTCAATGGCTAACCCTCACATGAGAACCTTCCATTTATCATGGATATCTTTCTTCACCTGTTTCGTCTCGACATTCGCGGCAGCACCATTAGTCCCGATCATCCGGGACAACCTTAACCTCACAAAATCCGACGTTGGTAACGCCGGAGTCGCTTCGGTTTCAGGTAGTATTTTCTCAAGGCTCGCAATGGGTGCAATTTGTGACCTATTAGGTCCACGTTATGGTTGTGCTTTCCTTATCATGCTTACAGCACCAACAGTGTTTTGTATGTCATTTGTTGAAAATGCTGCTGGTTATATAGCAGTTAGGTTTATGATTGGTTTCTCTTTGGCAACATTTGTTTCATGCCAATATTGGATGAGTACTATGTTTAATAGTAAAATTATTGGACTTGTTAATGGTACTGCTGCTGGTTGGGGTAATATGGGTGGTGGGGCCACTCAGCTTATTATGCCTTTGGTGTATGAGTTGATTAGAAGAGCTGGTGCTACTCCTTTCACTGCTTGGAGAATTGCCTTTTTTATCCCTGGTTGGTTGCATGTTATCATGGGTATTTTGGTCTTAACATTAGGCCAAGATTTACCTGATGGTAACCTTGGTGCCTTACAGAAGAAGGGTAATGTTGCTAAAGACAAGTTCACAAAGGTTTTGTGGTATGCTATAACAAATTACAGGACATGGATTTTTGCACTGCTTTATGGTTACTCTATGGGAGTTGAATTGACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAACCTAAAGCTACACACAGCTGGAATCATTGCTGCATCCTTTGGAATGGCAAACTTAGTTGCTCGTCCATTCGGCGGTTATGCATCAGATGTTGCAGCAAGATTATTCGGCATGCGAGGAAGACTATGGACACTCTGGATCTTCCAAACCCTAGGTGGAGTTTTCTGCATATGGTTAGGACGTGCGAATACACTTCCGATCGCAGTACTATCCATGATCCTCTTCTCAGTTGGAGCACAAGCTGCATGTGGTGCAACATTTGGAATCATTCCATTCATATCAAGAAGATCTTTAGGAATTATATCAGGTTTAACTGGTGCAGGTGGAAACTTTGGTTCCGGATTAACACAGTTGATATTTTTTTCAAGCTCAAAATTTTCAACAGCTTCAGGTCTTTCATGGATGGGTGCAATGATTGTTGGTTGTACACTTCCTGTTGCATTTGTTCATTTTCCACAGTGGGGTAGCATGTTCCTTCCACCTTCAAAAGAGATCAATGAAGAACACTATTACACTTCTGAATGGAATGAAGATGAAGTACAGAAAGGGTTGCATCAACCAAGTCTTAGGTTTGCTGAGAATAGTCGTTCTGAGAGAGGAAAGCGTGTGGCTTCTGCAGCAACACCACCAAATACAACTCCTACCCACTAG

Protein sequence

>Msa0639410

MADIEGSPGSSMHGVTGREQTFMSSVASPMVPTDTTAKFALPVDSEHKSKVFKLFSMANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDVGNAGVASVSGSIFSRLAMGAICDLLGPRYGCAFLIMLTAPTVFCMSFVENAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVAKDKFTKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWIFQTLGGVFCIWLGRANTLPIAVLSMILFSVGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSSSKFSTASGLSWMGAMIVGCTLPVAFVHFPQWGSMFLPPSKEINEEHYYTSEWNEDEVQKGLHQPSLRFAENSRSERGKRVASAATPPNTTPTH*