AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0444200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444200 MtrunA17_Chr3g0083901 98.089 314 6 0 1 314 1 314 0.0 629
Msa0444200 MtrunA17_Chr8g0352621 78.662 314 66 1 1 314 1 313 0.0 526
Msa0444200 MtrunA17_Chr8g0352611 71.656 314 88 1 1 314 1 313 5.91e-166 464
Msa0444200 MtrunA17_Chr3g0083921 69.108 314 97 0 1 314 1 314 9.52e-163 456
Msa0444200 MtrunA17_Chr8g0352591 70.833 312 80 1 1 312 1 301 1.45e-161 452
Msa0444200 MtrunA17_Chr2g0293441 46.624 311 166 0 1 311 1 311 3.90e-108 317
Msa0444200 MtrunA17_Chr5g0425971 46.667 315 167 1 1 314 1 315 8.07e-100 296
Msa0444200 MtrunA17_Chr8g0382281 47.923 313 162 1 1 312 1 313 1.75e-97 290
Msa0444200 MtrunA17_Chr8g0352571 40.196 306 180 1 10 312 11 316 2.62e-75 234
Msa0444200 MtrunA17_Chr8g0393281 37.898 314 192 3 1 312 1 313 3.29e-71 223
Msa0444200 MtrunA17_Chr6g0479411 37.342 316 195 3 1 314 28 342 8.59e-68 215
Msa0444200 MtrunA17_Chr6g0479421 38.291 316 192 3 1 314 1 315 1.04e-66 211
Msa0444200 MtrunA17_Chr1g0162071 35.463 313 199 3 1 311 1 312 4.35e-64 204
Msa0444200 MtrunA17_Chr1g0210981 35.873 315 199 3 1 313 1 314 3.17e-61 197
Msa0444200 MtrunA17_Chr6g0479391 35.000 300 193 2 15 313 16 314 1.60e-56 185
Msa0444200 MtrunA17_Chr8g0352581 36.076 316 177 6 14 312 5 312 1.58e-54 180
Msa0444200 MtrunA17_Chr6g0461141 26.042 288 205 4 33 312 23 310 8.52e-30 115
Msa0444200 MtrunA17_Chr3g0084011 67.123 73 24 0 1 73 1 73 1.08e-27 103
Msa0444200 MtrunA17_Chr3g0084021 73.846 65 17 0 144 208 5 69 1.28e-27 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444200 AT5G12380.1 53.376 311 145 0 1 311 1 311 4.39e-122 353
Msa0444200 AT1G35720.1 50.633 316 154 2 1 314 1 316 2.94e-109 320
Msa0444200 AT5G10230.1 50.159 315 155 2 1 314 1 314 1.82e-104 308
Msa0444200 AT5G10220.1 49.211 317 157 3 1 314 1 316 3.97e-103 305
Msa0444200 AT5G65020.1 49.367 316 158 2 1 314 1 316 4.05e-103 305
Msa0444200 AT5G65020.2 50.172 291 144 1 25 314 11 301 8.22e-98 291
Msa0444200 AT2G38760.1 40.881 318 181 3 1 311 1 318 4.36e-81 249
Msa0444200 AT1G68090.1 36.825 315 197 2 1 313 1 315 4.29e-66 210
Msa0444200 AT1G68090.2 35.600 250 159 2 1 248 1 250 5.18e-48 161
Msa0444200 AT2G38750.2 34.091 308 178 7 25 314 2 302 8.39e-48 162
Msa0444200 AT2G38750.1 34.091 308 178 7 25 314 19 319 9.93e-48 163

Find 67 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCCATTATCGCAATTT+TGG 0.073058 3_3:+17099251 Msa0444200:CDS
CGCAATGCAATCAAGAAATT+TGG 0.087435 3_3:+17100902 Msa0444200:CDS
GCCTCAGTTTGTGCCAATTT+TGG 0.143057 3_3:-17100067 None:intergenic
GAAGTTCATCCTTACTCTTT+TGG 0.239787 3_3:+17101063 Msa0444200:CDS
TTGGATTGGTGAGCTCATTT+AGG 0.322139 3_3:+17100023 Msa0444200:CDS
ATGACCCAAAATTGCGATAA+TGG 0.322359 3_3:-17099256 None:intergenic
TAGCTGTGTGCAATGTCTTT+TGG 0.322545 3_3:-17100602 None:intergenic
CATCTTGAACAGGAGATGTT+TGG 0.339606 3_3:-17096986 None:intergenic
AGATGAGATCAATCCAAAAT+TGG 0.364053 3_3:+17100054 Msa0444200:CDS
TTCATCTCTGCAGAAATTGC+TGG 0.367115 3_3:+17100560 Msa0444200:intron
GGTGAGCTCATTTAGGTATG+AGG 0.370400 3_3:+17100030 Msa0444200:CDS
GTAGTCCCCTGAGGTTTCCT+TGG 0.401072 3_3:-17101038 None:intergenic
ATCTTGAACAGGAGATGTTT+GGG 0.402524 3_3:-17096985 None:intergenic
GCAACAATGAAGAAGTCATT+AGG 0.413585 3_3:+17100125 Msa0444200:CDS
ACGCTTGTAGCGGTTATGAT+AGG 0.462416 3_3:-17099715 None:intergenic
ACAGATTAGAAAAGCTTATG+AGG 0.471180 3_3:+17099299 Msa0444200:CDS
GATTGTGACAAGGGCTGAAA+AGG 0.472813 3_3:+17100952 Msa0444200:CDS
CATGTTTCCCCAAAAGAGTA+AGG 0.476294 3_3:-17101072 None:intergenic
AGAGCCTCAGCATCTTGAAC+AGG 0.477894 3_3:-17096996 None:intergenic
GCAGTCTCCAAGGAAACCTC+AGG 0.496953 3_3:+17101031 Msa0444200:CDS
AGAAATCTCCGGTGACTTTG+AGG 0.502072 3_3:+17099359 Msa0444200:CDS
GCTATCAACTGAAGAGCTCT+TGG 0.504256 3_3:+17099680 Msa0444200:CDS
CATTGATCAAAACAGCTTCA+CGG 0.510134 3_3:-17099602 None:intergenic
AAAACAGCTTCACGGTCTGC+AGG 0.518927 3_3:-17099594 None:intergenic
TGAACAGCAATGGTGGCCAT+TGG 0.524335 3_3:-17096960 None:intergenic
CACCACCGGTCATCTTCGCC+AGG 0.524516 3_3:+17099764 Msa0444200:CDS
GCTCTTCGACTTGCTTTCAA+AGG 0.529320 3_3:+17097014 Msa0444200:CDS
GAAAGTGTCAAGGAAAAGAA+AGG 0.529912 3_3:+17100103 Msa0444200:CDS
AAATTTGGAACCGATGAAGA+TGG 0.530403 3_3:+17100917 Msa0444200:CDS
TGCCATGTTCATCTCGATAA+CGG 0.533113 3_3:-17100192 None:intergenic
ACATGGCATCTCCATTAGTA+AGG 0.533720 3_3:+17100207 Msa0444200:CDS
AGCAGACACATCTTCTTCGA+TGG 0.539407 3_3:-17099739 None:intergenic
GTGAGCTCATTTAGGTATGA+GGG 0.545690 3_3:+17100031 Msa0444200:CDS
ACTTGCCTGGCGAAGATGAC+CGG 0.547219 3_3:-17099769 None:intergenic
TCCAAAATTGGCACAAACTG+AGG 0.551400 3_3:+17100066 Msa0444200:CDS
CGTCTTGAGTCAGAAATCTC+CGG 0.560368 3_3:+17099348 Msa0444200:CDS
CTTCGATGGAACGCTTGTAG+CGG 0.565122 3_3:-17099725 None:intergenic
TTCAGAGGGCTGTGTACCGG+TGG 0.570665 3_3:+17099562 Msa0444200:intron
ATCTCCTGTTCAAGATGCTG+AGG 0.576916 3_3:+17096992 Msa0444200:CDS
AAGTTGAGTCTTGCTCCTTG+TGG 0.582635 3_3:-17100155 None:intergenic
TCTTGAAGATGCAGTCTCCA+AGG 0.582711 3_3:+17101021 Msa0444200:CDS
CAAGGGCTGAAAAGGATCTG+AGG 0.584816 3_3:+17100960 Msa0444200:CDS
AGGATGGGGTGCTGATAACA+AGG 0.586318 3_3:+17099233 Msa0444200:intron
ATCAATGTAGCAATCAGGAA+TGG 0.588048 3_3:+17099618 Msa0444200:CDS
AAGGGCTGAAAAGGATCTGA+GGG 0.591740 3_3:+17100961 Msa0444200:CDS
GGCTGTGTACCGGTGGATGT+TGG 0.594758 3_3:+17099569 Msa0444200:CDS
GAACTTCTTGTAGTCCCCTG+AGG 0.600520 3_3:-17101047 None:intergenic
GATGTGTCTGCTCACACCAC+CGG 0.601797 3_3:+17099750 Msa0444200:CDS
GCGGCTCAGTCCATCTTCAT+CGG 0.605259 3_3:-17100927 None:intergenic
CAAGCTAACTATCACTCCAA+TGG 0.605638 3_3:+17096944 Msa0444200:exon
AACCGTTATCGAGATGAACA+TGG 0.608246 3_3:+17100190 Msa0444200:CDS
ATAGTATACCTCAAAGTCAC+CGG 0.609513 3_3:-17099367 None:intergenic
CTGAAGAGCTCTTGGCAGTG+AGG 0.609550 3_3:+17099688 Msa0444200:CDS
CTGCAGGTTCCAACATCCAC+CGG 0.614647 3_3:-17099578 None:intergenic
CAGCCCTTGTCACAATCACG+CGG 0.616887 3_3:-17100946 None:intergenic
GTCATAGAAATGTTCATCAG+AGG 0.629014 3_3:+17099274 Msa0444200:CDS
TATTATTCATGAAAGTGTCA+AGG 0.631217 3_3:+17100093 Msa0444200:CDS
CAGTCTCCAAGGAAACCTCA+GGG 0.644391 3_3:+17101032 Msa0444200:CDS
AAGGAGCAAGACTCAACTTG+TGG 0.646109 3_3:+17100159 Msa0444200:CDS
TCATTAGGATTCTTACCACA+AGG 0.647125 3_3:+17100140 Msa0444200:CDS
TGAGCCGCGTGATTGTGACA+AGG 0.658507 3_3:+17100942 Msa0444200:CDS
TGCCTGGCGAAGATGACCGG+TGG 0.667284 3_3:-17099766 None:intergenic
GAGCCGCGTGATTGTGACAA+GGG 0.685501 3_3:+17100943 Msa0444200:CDS
TTGGGTATGAACAGCAATGG+TGG 0.688449 3_3:-17096967 None:intergenic
TGGCAACAAAGACTATCATG+TGG 0.723538 3_3:+17099638 Msa0444200:CDS
TGTTTGGGTATGAACAGCAA+TGG 0.741360 3_3:-17096970 None:intergenic
AGTCTCCAAGGAAACCTCAG+GGG 0.750846 3_3:+17101033 Msa0444200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATAATTGATTTTTTTGA+AGG + chr3_3:17097107-17097126 Msa0444200:intron 10.0%
!!! TTTTTATAGAAAATTTTTAC+CGG + chr3_3:17098122-17098141 Msa0444200:intron 10.0%
!!! TTTTTTTTGCTATAAAAAAA+AGG - chr3_3:17098227-17098246 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGACA+AGG - chr3_3:17098480-17098499 None:intergenic 10.0%
!! TTTAATTATATAAGAACTTA+TGG + chr3_3:17098522-17098541 Msa0444200:intron 10.0%
!!! TCTATTTTTTTTCGAAAATA+AGG - chr3_3:17097386-17097405 None:intergenic 15.0%
!!! AATATATTTTCCTTACTATA+TGG - chr3_3:17098563-17098582 None:intergenic 15.0%
!!! AATATATTTTCCTTACTATA+TGG - chr3_3:17098563-17098582 None:intergenic 15.0%
!! CATAATAATCTATTACAAAA+AGG + chr3_3:17099170-17099189 Msa0444200:intron 15.0%
!!! ATGAAACCATTTTTTTAATT+TGG + chr3_3:17100327-17100346 Msa0444200:intron 15.0%
!!! TGAAACCATTTTTTTAATTT+GGG + chr3_3:17100328-17100347 Msa0444200:intron 15.0%
!! TATATTATCCTGCAATAAAT+GGG - chr3_3:17097969-17097988 None:intergenic 20.0%
!!! GGGTTTAATTTTTTTTTTTG+AGG + chr3_3:17098009-17098028 Msa0444200:intron 20.0%
!!! AAAAGGGTATATTATATACA+AGG - chr3_3:17098091-17098110 None:intergenic 20.0%
!! AAAAAATTGAGCTTGTAAAA+GGG - chr3_3:17098107-17098126 None:intergenic 20.0%
!! TAAAAAATTGAGCTTGTAAA+AGG - chr3_3:17098108-17098127 None:intergenic 20.0%
!!! AAAAAACATTTTTGTTAGCT+AGG + chr3_3:17098244-17098263 Msa0444200:intron 20.0%
!! CAAAATGAAGCAATAATTTA+AGG - chr3_3:17098700-17098719 None:intergenic 20.0%
!! ACCATTAATTTATTCATCAA+CGG - chr3_3:17099440-17099459 None:intergenic 20.0%
!!! ATAAAAATTATTGAGCATTG+AGG - chr3_3:17099914-17099933 None:intergenic 20.0%
!! TACAACTATAATAAAAACCA+TGG - chr3_3:17099962-17099981 None:intergenic 20.0%
!!! TTTATTTTGTACCTTACTAA+TGG - chr3_3:17100221-17100240 None:intergenic 20.0%
!!! GAAACCATTTTTTTAATTTG+GGG + chr3_3:17100329-17100348 Msa0444200:intron 20.0%
!!! TTTCAATTATTTTTCGTCAA+AGG - chr3_3:17100520-17100539 None:intergenic 20.0%
!! GACGAAAAATAATTGAAAAA+AGG + chr3_3:17100522-17100541 Msa0444200:intron 20.0%
!! TAAAATGAGATATTTGATGA+TGG - chr3_3:17100686-17100705 None:intergenic 20.0%
!!! ATTTTAACCATGCTAGATAA+TGG + chr3_3:17097173-17097192 Msa0444200:intron 25.0%
!! TTTTAACCATGCTAGATAAT+GGG + chr3_3:17097174-17097193 Msa0444200:intron 25.0%
! AAAGAAAAGCTATAACGATT+AGG - chr3_3:17097420-17097439 None:intergenic 25.0%
!!! ATAACCAAACACTTTTTCTA+AGG + chr3_3:17097492-17097511 Msa0444200:intron 25.0%
! AATTGCTGCATTATATAATC+AGG + chr3_3:17097691-17097710 Msa0444200:intron 25.0%
! ATTGCTGCATTATATAATCA+GGG + chr3_3:17097692-17097711 Msa0444200:intron 25.0%
!!! TTTAATTTTCCTCTTGCTTT+TGG - chr3_3:17097908-17097927 None:intergenic 25.0%
! ATATTATCCTGCAATAAATG+GGG - chr3_3:17097968-17097987 None:intergenic 25.0%
! GTATATTATCCTGCAATAAA+TGG - chr3_3:17097970-17097989 None:intergenic 25.0%
! TACAATTTGAGAAATCAAAC+CGG - chr3_3:17098144-17098163 None:intergenic 25.0%
! AGGAACATAAAAAAAGCTTA+TGG - chr3_3:17098190-17098209 None:intergenic 25.0%
!!! AAAAGGTTATTTTTTCTGAG+AGG - chr3_3:17098210-17098229 None:intergenic 25.0%
! ATTCATTCAATAATAACGCA+AGG + chr3_3:17098320-17098339 Msa0444200:intron 25.0%
! TACCTACTAAATACCATTTA+TGG + chr3_3:17098361-17098380 Msa0444200:intron 25.0%
! AAATACCATTTATGGTGATA+AGG + chr3_3:17098369-17098388 Msa0444200:intron 25.0%
! AATACCATTTATGGTGATAA+GGG + chr3_3:17098370-17098389 Msa0444200:intron 25.0%
!!! ATTGCTTCATTTTGATTGAA+TGG + chr3_3:17098706-17098725 Msa0444200:intron 25.0%
!! ATTTCTTTTAAGCAAAGTCT+CGG - chr3_3:17099116-17099135 None:intergenic 25.0%
!!! ATTTATTTTTCAAACTCTGC+AGG + chr3_3:17099213-17099232 Msa0444200:intron 25.0%
!! ACCGTTGATGAATAAATTAA+TGG + chr3_3:17099436-17099455 Msa0444200:intron 25.0%
! TATTTCAATACACTCGTAAT+GGG - chr3_3:17099486-17099505 None:intergenic 25.0%
! ATATTTCAATACACTCGTAA+TGG - chr3_3:17099487-17099506 None:intergenic 25.0%
!!! TATTATTCATGAAAGTGTCA+AGG + chr3_3:17100093-17100112 Msa0444200:CDS 25.0%
!!! ACTTTTTCCATTTACAGATT+AGG + chr3_3:17100243-17100262 Msa0444200:intron 25.0%
! ATGGTTTCATAAAAGACATT+CGG - chr3_3:17100317-17100336 None:intergenic 25.0%
! CATTCCCCAAATTAAAAAAA+TGG - chr3_3:17100336-17100355 None:intergenic 25.0%
! TTAGATTTACAACGTCAAAT+TGG + chr3_3:17100422-17100441 Msa0444200:intron 25.0%
!!! AACAACAATTTTGATGAACA+AGG - chr3_3:17100471-17100490 None:intergenic 25.0%
! AAAAATACTATGAGAAGGTT+AGG + chr3_3:17100646-17100665 Msa0444200:intron 25.0%
!! AAATCACTAAATTTTCTCCA+TGG + chr3_3:17100783-17100802 Msa0444200:intron 25.0%
! GAAATTGTTCAATTATGTGT+AGG + chr3_3:17100874-17100893 Msa0444200:intron 25.0%
!! ATGACCTTAGAAAAAGTGTT+TGG - chr3_3:17097499-17097518 None:intergenic 30.0%
TGCTACAAGTAAAGAACATA+AGG - chr3_3:17097608-17097627 None:intergenic 30.0%
!! CGGTAGTTATTTTCATCTAT+GGG - chr3_3:17097859-17097878 None:intergenic 30.0%
!! ACGGTAGTTATTTTCATCTA+TGG - chr3_3:17097860-17097879 None:intergenic 30.0%
AAATAACTACCGTATACATG+AGG + chr3_3:17097867-17097886 Msa0444200:intron 30.0%
ATTGCAGGATAATATACTAC+TGG + chr3_3:17097973-17097992 Msa0444200:intron 30.0%
AATAATCAATACCAAGTCCT+TGG - chr3_3:17098303-17098322 None:intergenic 30.0%
ATTCAATAATAACGCAAGGT+AGG + chr3_3:17098324-17098343 Msa0444200:intron 30.0%
CACCATAAATGGTATTTAGT+AGG - chr3_3:17098366-17098385 None:intergenic 30.0%
! TTTTCCTTACTATATGGTGT+TGG - chr3_3:17098557-17098576 None:intergenic 30.0%
! TTTTCCTTACTATATGGTGT+TGG - chr3_3:17098557-17098576 None:intergenic 30.0%
CTTATGATTGATCAATGTGA+TGG + chr3_3:17098960-17098979 Msa0444200:intron 30.0%
! TTTCTTTTAAGCAAAGTCTC+GGG - chr3_3:17099115-17099134 None:intergenic 30.0%
ACAGATTAGAAAAGCTTATG+AGG + chr3_3:17099299-17099318 Msa0444200:CDS 30.0%
! TTTTGATCAATGTAGCAATC+AGG + chr3_3:17099613-17099632 Msa0444200:CDS 30.0%
GTCACCAAATAATGTTTATG+TGG + chr3_3:17099803-17099822 Msa0444200:intron 30.0%
TCGACCACATAAACATTATT+TGG - chr3_3:17099810-17099829 None:intergenic 30.0%
! ATTGAGGCACTAATACATTA+TGG - chr3_3:17099898-17099917 None:intergenic 30.0%
! CAGATCACAATTTAAAACCA+TGG + chr3_3:17099942-17099961 Msa0444200:intron 30.0%
AGATGAGATCAATCCAAAAT+TGG + chr3_3:17100054-17100073 Msa0444200:CDS 30.0%
AACAGATATCTCAACTATGT+TGG - chr3_3:17100271-17100290 None:intergenic 30.0%
!! ATTATTTTTCGTCAAAGGTG+TGG - chr3_3:17100515-17100534 None:intergenic 30.0%
!!! CCTTCTCATAGTATTTTTTG+TGG - chr3_3:17100644-17100663 None:intergenic 30.0%
CCACAAAAAATACTATGAGA+AGG + chr3_3:17100641-17100660 Msa0444200:CDS 30.0%
!! TGAGATATTTGATGATGGAA+AGG - chr3_3:17100681-17100700 None:intergenic 30.0%
TGTCATGTAGGACATTTATT+TGG - chr3_3:17100812-17100831 None:intergenic 30.0%
! TCTCAATGATTTTGTCATGT+AGG - chr3_3:17100824-17100843 None:intergenic 30.0%
! AAGTTCATCCTTACTCTTTT+GGG + chr3_3:17101064-17101083 Msa0444200:CDS 30.0%
ATCTTGAACAGGAGATGTTT+GGG - chr3_3:17096988-17097007 None:intergenic 35.0%
TACAACGTGCCATATATATG+CGG + chr3_3:17097829-17097848 Msa0444200:intron 35.0%
!! GACTTTTGATTGTTTTGTGC+AGG - chr3_3:17097931-17097950 None:intergenic 35.0%
ACTACTGGATAGTATACTAC+TGG + chr3_3:17097988-17098007 Msa0444200:intron 35.0%
CTACTGGATAGTATACTACT+GGG + chr3_3:17097989-17098008 Msa0444200:intron 35.0%
GGGTATATTATATACAAGGC+CGG - chr3_3:17098087-17098106 None:intergenic 35.0%
CCTTGGTATTTAGTTGAACT+AGG - chr3_3:17098286-17098305 None:intergenic 35.0%
CCTAGTTCAACTAAATACCA+AGG + chr3_3:17098283-17098302 Msa0444200:intron 35.0%
TCAACTAAATACCAAGGACT+TGG + chr3_3:17098289-17098308 Msa0444200:intron 35.0%
GTTACCCTTATCACCATAAA+TGG - chr3_3:17098377-17098396 None:intergenic 35.0%
TATGGTGATAAGGGTAACTT+CGG + chr3_3:17098379-17098398 Msa0444200:intron 35.0%
! AGGTGCTATGATATGTTAGA+AGG - chr3_3:17098460-17098479 None:intergenic 35.0%
TTCACCAACACCATATAGTA+AGG + chr3_3:17098550-17098569 Msa0444200:intron 35.0%
TTCACCAACACCATATAGTA+AGG + chr3_3:17098550-17098569 Msa0444200:intron 35.0%
! ACCTTTGAAAGCATGTTGAA+GGG - chr3_3:17098675-17098694 None:intergenic 35.0%
! AACCTTTGAAAGCATGTTGA+AGG - chr3_3:17098676-17098695 None:intergenic 35.0%
!! ATTTTTCAAACTCTGCAGGA+TGG + chr3_3:17099217-17099236 Msa0444200:intron 35.0%
!! TTTTTCAAACTCTGCAGGAT+GGG + chr3_3:17099218-17099237 Msa0444200:intron 35.0%
! AAGGCCATTATCGCAATTTT+GGG + chr3_3:17099252-17099271 Msa0444200:CDS 35.0%
ATGACCCAAAATTGCGATAA+TGG - chr3_3:17099259-17099278 None:intergenic 35.0%
GTCATAGAAATGTTCATCAG+AGG + chr3_3:17099274-17099293 Msa0444200:CDS 35.0%
ATAGTATACCTCAAAGTCAC+CGG - chr3_3:17099370-17099389 None:intergenic 35.0%
! CTTTAGTGTCTAAAGTGAGT+TGG - chr3_3:17099404-17099423 None:intergenic 35.0%
ACTCACTTTAGACACTAAAG+CGG + chr3_3:17099404-17099423 Msa0444200:intron 35.0%
!!! AACATGACCTTGTTTTTCAG+AGG + chr3_3:17099547-17099566 Msa0444200:intron 35.0%
!!! ACATGACCTTGTTTTTCAGA+GGG + chr3_3:17099548-17099567 Msa0444200:intron 35.0%
CATTGATCAAAACAGCTTCA+CGG - chr3_3:17099605-17099624 None:intergenic 35.0%
ATCAATGTAGCAATCAGGAA+TGG + chr3_3:17099618-17099637 Msa0444200:CDS 35.0%
! ACAATAAAGAATGACTTGCC+TGG - chr3_3:17099785-17099804 None:intergenic 35.0%
AACATCAAACTCAGTCGAAT+CGG + chr3_3:17099835-17099854 Msa0444200:intron 35.0%
CGAATCGGATTATGACATAA+TGG + chr3_3:17099850-17099869 Msa0444200:intron 35.0%
!! GAAAGTGTCAAGGAAAAGAA+AGG + chr3_3:17100103-17100122 Msa0444200:CDS 35.0%
GCAACAATGAAGAAGTCATT+AGG + chr3_3:17100125-17100144 Msa0444200:CDS 35.0%
TCATTAGGATTCTTACCACA+AGG + chr3_3:17100140-17100159 Msa0444200:CDS 35.0%
GGTTCAAGTCAGATGTAAAA+TGG - chr3_3:17100394-17100413 None:intergenic 35.0%
! GTTGTAAATCTAAAGCGACA+GGG - chr3_3:17100415-17100434 None:intergenic 35.0%
CGCAATGCAATCAAGAAATT+TGG + chr3_3:17100902-17100921 Msa0444200:CDS 35.0%
! AAATTTGGAACCGATGAAGA+TGG + chr3_3:17100917-17100936 Msa0444200:CDS 35.0%
! GAAGTTCATCCTTACTCTTT+TGG + chr3_3:17101063-17101082 Msa0444200:CDS 35.0%
! AGTTCATCCTTACTCTTTTG+GGG + chr3_3:17101065-17101084 Msa0444200:CDS 35.0%
CAAGCTAACTATCACTCCAA+TGG + chr3_3:17096944-17096963 Msa0444200:exon 40.0%
TGTTTGGGTATGAACAGCAA+TGG - chr3_3:17096973-17096992 None:intergenic 40.0%
CATCTTGAACAGGAGATGTT+TGG - chr3_3:17096989-17097008 None:intergenic 40.0%
AACACACCCATTATCTAGCA+TGG - chr3_3:17097183-17097202 None:intergenic 40.0%
ATGGGTGTACCGCATATATA+TGG - chr3_3:17097841-17097860 None:intergenic 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG - chr3_3:17097897-17097916 None:intergenic 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG - chr3_3:17097901-17097920 None:intergenic 40.0%
!!! TTTTTTTTGAGGCCCATCCT+TGG + chr3_3:17098020-17098039 Msa0444200:intron 40.0%
!!! TTTTTTTGAGGCCCATCCTT+GGG + chr3_3:17098021-17098040 Msa0444200:intron 40.0%
ATGCTTGCATCGAAATGTTC+AGG - chr3_3:17098805-17098824 None:intergenic 40.0%
TGTGCTTCAATACGAAGTGT+AGG + chr3_3:17098930-17098949 Msa0444200:intron 40.0%
AATGTGACTTCCAGATACTG+AGG - chr3_3:17099015-17099034 None:intergenic 40.0%
! TTTTCAAACTCTGCAGGATG+GGG + chr3_3:17099219-17099238 Msa0444200:intron 40.0%
! CAAGGCCATTATCGCAATTT+TGG + chr3_3:17099251-17099270 Msa0444200:CDS 40.0%
! TTATGAGGAGCTTTTCGAAG+AGG + chr3_3:17099314-17099333 Msa0444200:CDS 40.0%
TGGCAACAAAGACTATCATG+TGG + chr3_3:17099638-17099657 Msa0444200:CDS 40.0%
GATTCGACTGAGTTTGATGT+TGG - chr3_3:17099836-17099855 None:intergenic 40.0%
! GATTTTGAGCAGCTTTTGGT+TGG + chr3_3:17100004-17100023 Msa0444200:intron 40.0%
!! TTGGATTGGTGAGCTCATTT+AGG + chr3_3:17100023-17100042 Msa0444200:CDS 40.0%
GTGAGCTCATTTAGGTATGA+GGG + chr3_3:17100031-17100050 Msa0444200:CDS 40.0%
TCCAAAATTGGCACAAACTG+AGG + chr3_3:17100066-17100085 Msa0444200:CDS 40.0%
AACCGTTATCGAGATGAACA+TGG + chr3_3:17100190-17100209 Msa0444200:CDS 40.0%
TGCCATGTTCATCTCGATAA+CGG - chr3_3:17100195-17100214 None:intergenic 40.0%
ACATGGCATCTCCATTAGTA+AGG + chr3_3:17100207-17100226 Msa0444200:CDS 40.0%
GTTGGCACCTAATCTGTAAA+TGG - chr3_3:17100253-17100272 None:intergenic 40.0%
! CGTTGTAAATCTAAAGCGAC+AGG - chr3_3:17100416-17100435 None:intergenic 40.0%
ACAACGTCAAATTGGTACCA+TGG + chr3_3:17100430-17100449 Msa0444200:intron 40.0%
TTCATCTCTGCAGAAATTGC+TGG + chr3_3:17100560-17100579 Msa0444200:intron 40.0%
! TAGCTGTGTGCAATGTCTTT+TGG - chr3_3:17100605-17100624 None:intergenic 40.0%
! GGACATTTATTTGGTAGCCA+TGG - chr3_3:17100803-17100822 None:intergenic 40.0%
CATGTTTCCCCAAAAGAGTA+AGG - chr3_3:17101075-17101094 None:intergenic 40.0%
TTGGGTATGAACAGCAATGG+TGG - chr3_3:17096970-17096989 None:intergenic 45.0%
ATCTCCTGTTCAAGATGCTG+AGG + chr3_3:17096992-17097011 Msa0444200:CDS 45.0%
! GCTCTTCGACTTGCTTTCAA+AGG + chr3_3:17097014-17097033 Msa0444200:CDS 45.0%
GTGGGGATTCCTCATGTATA+CGG - chr3_3:17097879-17097898 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG - chr3_3:17097896-17097915 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG - chr3_3:17097898-17097917 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG + chr3_3:17097896-17097915 Msa0444200:intron 45.0%
GTTTGCACCCCATTTATTGC+AGG + chr3_3:17097958-17097977 Msa0444200:intron 45.0%
!!! TTTTTTGAGGCCCATCCTTG+GGG + chr3_3:17098022-17098041 Msa0444200:intron 45.0%
ATGGTTGCTGGGAGCAATAA+GGG - chr3_3:17098630-17098649 None:intergenic 45.0%
AATGGTTGCTGGGAGCAATA+AGG - chr3_3:17098631-17098650 None:intergenic 45.0%
TCAACTGAGGAATGGTTGCT+GGG - chr3_3:17098641-17098660 None:intergenic 45.0%
GCCCTTCAACATGCTTTCAA+AGG + chr3_3:17098671-17098690 Msa0444200:intron 45.0%
GAGTCTAGATCCTCAGTATC+TGG + chr3_3:17099002-17099021 Msa0444200:intron 45.0%
ACAGACTCGTTAGAGGTAGT+CGG - chr3_3:17099043-17099062 None:intergenic 45.0%
ACTACCTCTAACGAGTCTGT+AGG + chr3_3:17099043-17099062 Msa0444200:intron 45.0%
ACGAGTCTGTAGGTCCATAT+AGG + chr3_3:17099053-17099072 Msa0444200:intron 45.0%
AGAGTTCGTCGTCACCTATA+TGG - chr3_3:17099070-17099089 None:intergenic 45.0%
CTTTCGCGAGATGTTAGTGA+TGG + chr3_3:17099142-17099161 Msa0444200:intron 45.0%
CGTCTTGAGTCAGAAATCTC+CGG + chr3_3:17099348-17099367 Msa0444200:CDS 45.0%
AGAAATCTCCGGTGACTTTG+AGG + chr3_3:17099359-17099378 Msa0444200:CDS 45.0%
! ACACAGCCCTCTGAAAAACA+AGG - chr3_3:17099557-17099576 None:intergenic 45.0%
!! TTTTTCAGAGGGCTGTGTAC+CGG + chr3_3:17099559-17099578 Msa0444200:intron 45.0%
GCTATCAACTGAAGAGCTCT+TGG + chr3_3:17099680-17099699 Msa0444200:CDS 45.0%
ACGCTTGTAGCGGTTATGAT+AGG - chr3_3:17099718-17099737 None:intergenic 45.0%
AGCAGACACATCTTCTTCGA+TGG - chr3_3:17099742-17099761 None:intergenic 45.0%
! GCGTGATTTTGAGCAGCTTT+TGG + chr3_3:17100000-17100019 Msa0444200:intron 45.0%
!! TGAGCAGCTTTTGGTTGGAT+TGG + chr3_3:17100009-17100028 Msa0444200:intron 45.0%
GGTGAGCTCATTTAGGTATG+AGG + chr3_3:17100030-17100049 Msa0444200:CDS 45.0%
! GCCTCAGTTTGTGCCAATTT+TGG - chr3_3:17100070-17100089 None:intergenic 45.0%
AAGTTGAGTCTTGCTCCTTG+TGG - chr3_3:17100158-17100177 None:intergenic 45.0%
AAGGAGCAAGACTCAACTTG+TGG + chr3_3:17100159-17100178 Msa0444200:CDS 45.0%
CATTCGGCATGCAAAGATGT+CGG - chr3_3:17100301-17100320 None:intergenic 45.0%
GATTGTGACAAGGGCTGAAA+AGG + chr3_3:17100952-17100971 Msa0444200:CDS 45.0%
AAGGGCTGAAAAGGATCTGA+GGG + chr3_3:17100961-17100980 Msa0444200:CDS 45.0%
TCTTGAAGATGCAGTCTCCA+AGG + chr3_3:17101021-17101040 Msa0444200:CDS 45.0%
!!! TTTTAAAATTTGATTTTTAT+GGG - chr3_3:17097332-17097351 None:intergenic 5.0%
!!! TTTTTAAAATTTGATTTTTA+TGG - chr3_3:17097333-17097352 None:intergenic 5.0%
!!! ATGATTTTTTTATTTATAAA+AGG + chr3_3:17097452-17097471 Msa0444200:intron 5.0%
TGAACAGCAATGGTGGCCAT+TGG - chr3_3:17096963-17096982 None:intergenic 50.0%
AGAGCCTCAGCATCTTGAAC+AGG - chr3_3:17096999-17097018 None:intergenic 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG + chr3_3:17097737-17097756 Msa0444200:intron 50.0%
!!! TTTTTGAGGCCCATCCTTGG+GGG + chr3_3:17098023-17098042 Msa0444200:intron 50.0%
ATATACAAGGCCGGCCTTGA+GGG - chr3_3:17098078-17098097 None:intergenic 50.0%
TATATACAAGGCCGGCCTTG+AGG - chr3_3:17098079-17098098 None:intergenic 50.0%
CTCAACTGAGGAATGGTTGC+TGG - chr3_3:17098642-17098661 None:intergenic 50.0%
CAGCAACCATTCCTCAGTTG+AGG + chr3_3:17098640-17098659 Msa0444200:intron 50.0%
TGGACCTACAGACTCGTTAG+AGG - chr3_3:17099050-17099069 None:intergenic 50.0%
!! AGGATGGGGTGCTGATAACA+AGG + chr3_3:17099233-17099252 Msa0444200:intron 50.0%
AAAACAGCTTCACGGTCTGC+AGG - chr3_3:17099597-17099616 None:intergenic 50.0%
CTTCGATGGAACGCTTGTAG+CGG - chr3_3:17099728-17099747 None:intergenic 50.0%
CAAGGGCTGAAAAGGATCTG+AGG + chr3_3:17100960-17100979 Msa0444200:CDS 50.0%
CAGTCTCCAAGGAAACCTCA+GGG + chr3_3:17101032-17101051 Msa0444200:CDS 50.0%
AGTCTCCAAGGAAACCTCAG+GGG + chr3_3:17101033-17101052 Msa0444200:CDS 50.0%
GAACTTCTTGTAGTCCCCTG+AGG - chr3_3:17101050-17101069 None:intergenic 50.0%
AGCCTCCGAATTCTCAGGGA+CGG - chr3_3:17097718-17097737 None:intergenic 55.0%
TCCCTGAGAATTCGGAGGCT+CGG + chr3_3:17097718-17097737 Msa0444200:intron 55.0%
GCAAACAGCTCAACCGAGCT+GGG - chr3_3:17098052-17098071 None:intergenic 55.0%
TGCAAACAGCTCAACCGAGC+TGG - chr3_3:17098053-17098072 None:intergenic 55.0%
TATACAAGGCCGGCCTTGAG+GGG - chr3_3:17098077-17098096 None:intergenic 55.0%
GTGCGTCCTCAACTGAGGAA+TGG - chr3_3:17098649-17098668 None:intergenic 55.0%
CTGCAGGTTCCAACATCCAC+CGG - chr3_3:17099581-17099600 None:intergenic 55.0%
CTGAAGAGCTCTTGGCAGTG+AGG + chr3_3:17099688-17099707 Msa0444200:CDS 55.0%
GATGTGTCTGCTCACACCAC+CGG + chr3_3:17099750-17099769 Msa0444200:CDS 55.0%
ACTTGCCTGGCGAAGATGAC+CGG - chr3_3:17099772-17099791 None:intergenic 55.0%
GGCAAATTGCTGTCGTGCCA+TGG - chr3_3:17100450-17100469 None:intergenic 55.0%
GCGGCTCAGTCCATCTTCAT+CGG - chr3_3:17100930-17100949 None:intergenic 55.0%
TGAGCCGCGTGATTGTGACA+AGG + chr3_3:17100942-17100961 Msa0444200:CDS 55.0%
GAGCCGCGTGATTGTGACAA+GGG + chr3_3:17100943-17100962 Msa0444200:CDS 55.0%
CAGCCCTTGTCACAATCACG+CGG - chr3_3:17100949-17100968 None:intergenic 55.0%
GCAGTCTCCAAGGAAACCTC+AGG + chr3_3:17101031-17101050 Msa0444200:CDS 55.0%
GTAGTCCCCTGAGGTTTCCT+TGG - chr3_3:17101041-17101060 None:intergenic 55.0%
CAGGGCCGTCCCTGAGAATT+CGG + chr3_3:17097710-17097729 Msa0444200:intron 60.0%
GCCGAGCCTCCGAATTCTCA+GGG - chr3_3:17097722-17097741 None:intergenic 60.0%
AGCCGAGCCTCCGAATTCTC+AGG - chr3_3:17097723-17097742 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+TGG + chr3_3:17097724-17097743 Msa0444200:intron 60.0%
GAATTCGGAGGCTCGGCTCT+GGG + chr3_3:17097725-17097744 Msa0444200:intron 60.0%
GAGCTGTTTGCACCCCCTCA+AGG + chr3_3:17098061-17098080 Msa0444200:intron 60.0%
TGTTTGCACCCCCTCAAGGC+CGG + chr3_3:17098065-17098084 Msa0444200:intron 60.0%
ATACAAGGCCGGCCTTGAGG+GGG - chr3_3:17098076-17098095 None:intergenic 60.0%
GGCTTGTGCGTCCTCAACTG+AGG - chr3_3:17098654-17098673 None:intergenic 60.0%
TTCAGAGGGCTGTGTACCGG+TGG + chr3_3:17099562-17099581 Msa0444200:intron 60.0%
! GGCTGTGTACCGGTGGATGT+TGG + chr3_3:17099569-17099588 Msa0444200:CDS 60.0%
GGCCGTCCCTGAGAATTCGG+AGG + chr3_3:17097713-17097732 Msa0444200:intron 65.0%
TTGAGGCCCATCCTTGGGGG+AGG + chr3_3:17098026-17098045 Msa0444200:intron 65.0%
CACCACCGGTCATCTTCGCC+AGG + chr3_3:17099764-17099783 Msa0444200:CDS 65.0%
TGCCTGGCGAAGATGACCGG+TGG - chr3_3:17099769-17099788 None:intergenic 65.0%
GCTGGGCCTCCCCCAAGGAT+GGG - chr3_3:17098035-17098054 None:intergenic 70.0%
AGCTGGGCCTCCCCCAAGGA+TGG - chr3_3:17098036-17098055 None:intergenic 70.0%
TCCTTGGGGGAGGCCCAGCT+CGG + chr3_3:17098036-17098055 Msa0444200:intron 70.0%
ACCGAGCTGGGCCTCCCCCA+AGG - chr3_3:17098040-17098059 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 17096912 17101099 17096912 ID=Msa0444200;Name=Msa0444200
chr3_3 mRNA 17096912 17101099 17096912 ID=Msa0444200-mRNA-1;Parent=Msa0444200;Name=Msa0444200-mRNA-1;_AED=0.24;_eAED=0.24;_QI=51|1|0.83|1|1|1|6|0|314
chr3_3 exon 17096912 17097035 17096912 ID=Msa0444200-mRNA-1:exon:3567;Parent=Msa0444200-mRNA-1
chr3_3 exon 17099235 17099380 17099235 ID=Msa0444200-mRNA-1:exon:3568;Parent=Msa0444200-mRNA-1
chr3_3 exon 17099567 17099785 17099567 ID=Msa0444200-mRNA-1:exon:3569;Parent=Msa0444200-mRNA-1
chr3_3 exon 17100016 17100228 17100016 ID=Msa0444200-mRNA-1:exon:3570;Parent=Msa0444200-mRNA-1
chr3_3 exon 17100573 17100662 17100573 ID=Msa0444200-mRNA-1:exon:3571;Parent=Msa0444200-mRNA-1
chr3_3 exon 17100896 17101099 17100896 ID=Msa0444200-mRNA-1:exon:3572;Parent=Msa0444200-mRNA-1
chr3_3 five_prime_UTR 17096912 17096962 17096912 ID=Msa0444200-mRNA-1:five_prime_utr;Parent=Msa0444200-mRNA-1
chr3_3 CDS 17096963 17097035 17096963 ID=Msa0444200-mRNA-1:cds;Parent=Msa0444200-mRNA-1
chr3_3 CDS 17099235 17099380 17099235 ID=Msa0444200-mRNA-1:cds;Parent=Msa0444200-mRNA-1
chr3_3 CDS 17099567 17099785 17099567 ID=Msa0444200-mRNA-1:cds;Parent=Msa0444200-mRNA-1
chr3_3 CDS 17100016 17100228 17100016 ID=Msa0444200-mRNA-1:cds;Parent=Msa0444200-mRNA-1
chr3_3 CDS 17100573 17100662 17100573 ID=Msa0444200-mRNA-1:cds;Parent=Msa0444200-mRNA-1
chr3_3 CDS 17100896 17101099 17100896 ID=Msa0444200-mRNA-1:cds;Parent=Msa0444200-mRNA-1
Gene Sequence

>Msa0444200

ATGGCCACCATTGCTGTTCATACCCAAACATCTCCTGTTCAAGATGCTGAGGCTCTTCGACTTGCTTTCAAAGGATGGGGTGCTGATAACAAGGCCATTATCGCAATTTTGGGTCATAGAAATGTTCATCAGAGGCAACAGATTAGAAAAGCTTATGAGGAGCTTTTCGAAGAGGATCTCATCAAACGTCTTGAGTCAGAAATCTCCGGTGACTTTGAGAGGGCTGTGTACCGGTGGATGTTGGAACCTGCAGACCGTGAAGCTGTTTTGATCAATGTAGCAATCAGGAATGGCAACAAAGACTATCATGTGGTTGCTGAAATTGCTTCTGTGCTATCAACTGAAGAGCTCTTGGCAGTGAGGCGTGCCTATCATAACCGCTACAAGCGTTCCATCGAAGAAGATGTGTCTGCTCACACCACCGGTCATCTTCGCCAGCTTTTGGTTGGATTGGTGAGCTCATTTAGGTATGAGGGAGATGAGATCAATCCAAAATTGGCACAAACTGAGGCTAATATTATTCATGAAAGTGTCAAGGAAAAGAAAGGCAACAATGAAGAAGTCATTAGGATTCTTACCACAAGGAGCAAGACTCAACTTGTGGCAACTTTCAACCGTTATCGAGATGAACATGGCATCTCCATTAGTAAGAAATTGCTGGATCAAACATCTGATGACTTCCAAAAGACATTGCACACAGCTATTCGTTGCATCAATGACCACAAAAAATACTATGAGAAGGTTTTGCGCAATGCAATCAAGAAATTTGGAACCGATGAAGATGGACTGAGCCGCGTGATTGTGACAAGGGCTGAAAAGGATCTGAGGGACATCAAAGAGCTGTACTACAAGAGAAACAGTGTTCATCTTGAAGATGCAGTCTCCAAGGAAACCTCAGGGGACTACAAGAAGTTCATCCTTACTCTTTTGGGGAAACATGATTAA

Protein sequence

>Msa0444200

MATIAVHTQTSPVQDAEALRLAFKGWGADNKAIIAILGHRNVHQRQQIRKAYEELFEEDLIKRLESEISGDFERAVYRWMLEPADREAVLINVAIRNGNKDYHVVAEIASVLSTEELLAVRRAYHNRYKRSIEEDVSAHTTGHLRQLLVGLVSSFRYEGDEINPKLAQTEANIIHESVKEKKGNNEEVIRILTTRSKTQLVATFNRYRDEHGISISKKLLDQTSDDFQKTLHTAIRCINDHKKYYEKVLRNAIKKFGTDEDGLSRVIVTRAEKDLRDIKELYYKRNSVHLEDAVSKETSGDYKKFILTLLGKHD*