Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039380 | sp|Q9M2Z5|FBL53_ARATH | 68.562 | 299 | 92 | 2 | 9 | 305 | 11 | 309 | 1.37e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0039380 | -0.829729 | 4.373989e-55 | -8.615850e-47 |
| Msa0039380 | Msa0043680 | -0.818643 | 1.760959e-52 | -8.615850e-47 |
| Msa0039380 | Msa0043960 | 0.808367 | 3.207057e-50 | -8.615850e-47 |
| Msa0039380 | Msa0047470 | -0.804173 | 2.452508e-49 | -8.615850e-47 |
| Msa0039380 | Msa0090620 | 0.805260 | 1.454416e-49 | -8.615850e-47 |
| Msa0039380 | Msa0092660 | -0.803845 | 2.870507e-49 | -8.615850e-47 |
| Msa0039380 | Msa0092730 | -0.807612 | 4.643379e-50 | -8.615850e-47 |
| Msa0039380 | Msa0129270 | 0.803012 | 4.270480e-49 | -8.615850e-47 |
| Msa0039380 | Msa0137600 | -0.806001 | 1.016846e-49 | -8.615850e-47 |
| Msa0039380 | Msa0146470 | -0.823617 | 1.257947e-53 | -8.615850e-47 |
| Msa0039380 | Msa0178940 | -0.849626 | 2.866152e-60 | -8.615850e-47 |
| Msa0039380 | Msa0179800 | 0.800761 | 1.238144e-48 | -8.615850e-47 |
| Msa0039380 | Msa0185390 | -0.834745 | 2.508810e-56 | -8.615850e-47 |
| Msa0039380 | Msa0222070 | -0.836072 | 1.159421e-56 | -8.615850e-47 |
| Msa0039380 | Msa0222120 | -0.840388 | 8.958555e-58 | -8.615850e-47 |
| Msa0039380 | Msa0223390 | -0.801591 | 8.377248e-49 | -8.615850e-47 |
| Msa0039380 | Msa0231590 | -0.801303 | 9.596767e-49 | -8.615850e-47 |
| Msa0039380 | Msa0259980 | -0.803266 | 3.784474e-49 | -8.615850e-47 |
| Msa0039380 | Msa0263620 | -0.837570 | 4.809414e-57 | -8.615850e-47 |
| Msa0039380 | Msa0301460 | -0.823435 | 1.387322e-53 | -8.615850e-47 |
| Msa0039380 | Msa0302660 | -0.812231 | 4.703544e-51 | -8.615850e-47 |
| Msa0039380 | Msa0304870 | -0.825933 | 3.577338e-54 | -8.615850e-47 |
| Msa0039380 | Msa0341260 | -0.823622 | 1.254497e-53 | -8.615850e-47 |
| Msa0039380 | Msa0378000 | -0.807660 | 4.535976e-50 | -8.615850e-47 |
| Msa0039380 | Msa0382500 | -0.802304 | 5.977340e-49 | -8.615850e-47 |
| Msa0039380 | Msa0396970 | -0.804227 | 2.389723e-49 | -8.615850e-47 |
| Msa0039380 | Msa0417630 | -0.833210 | 6.078085e-56 | -8.615850e-47 |
| Msa0039380 | Msa0421800 | -0.842402 | 2.643883e-58 | -8.615850e-47 |
| Msa0039380 | Msa0424240 | 0.808000 | 3.840391e-50 | -8.615850e-47 |
| Msa0039380 | Msa0427590 | -0.843362 | 1.468561e-58 | -8.615850e-47 |
| Msa0039380 | Msa0444340 | -0.807047 | 6.116658e-50 | -8.615850e-47 |
| Msa0039380 | Msa0463540 | -0.806143 | 9.490908e-50 | -8.615850e-47 |
| Msa0039380 | Msa0467800 | -0.844484 | 7.345782e-59 | -8.615850e-47 |
| Msa0039380 | Msa0467880 | -0.841206 | 5.468731e-58 | -8.615850e-47 |
| Msa0039380 | Msa0478400 | 0.801196 | 1.009213e-48 | -8.615850e-47 |
| Msa0039380 | Msa0482020 | -0.803645 | 3.158494e-49 | -8.615850e-47 |
| Msa0039380 | Msa0514260 | -0.838335 | 3.057333e-57 | -8.615850e-47 |
| Msa0039380 | Msa0518160 | -0.837446 | 5.173579e-57 | -8.615850e-47 |
| Msa0039380 | Msa0519200 | -0.805064 | 1.598396e-49 | -8.615850e-47 |
| Msa0039380 | Msa0546740 | -0.823554 | 1.301211e-53 | -8.615850e-47 |
| Msa0039380 | Msa0575990 | 0.829584 | 4.743310e-55 | -8.615850e-47 |
| Msa0039380 | Msa0576100 | 0.824108 | 9.649582e-54 | -8.615850e-47 |
| Msa0039380 | Msa0607300 | -0.806582 | 7.669334e-50 | -8.615850e-47 |
| Msa0039380 | Msa0642650 | -0.817270 | 3.596785e-52 | -8.615850e-47 |
| Msa0039380 | Msa0681890 | -0.837638 | 4.618358e-57 | -8.615850e-47 |
| Msa0039380 | Msa0716600 | 0.834856 | 2.352671e-56 | -8.615850e-47 |
| Msa0039380 | Msa0716670 | -0.805619 | 1.223023e-49 | -8.615850e-47 |
| Msa0039380 | Msa0757990 | 0.805967 | 1.033730e-49 | -8.615850e-47 |
| Msa0039380 | Msa0793060 | -0.800757 | 1.240461e-48 | -8.615850e-47 |
| Msa0039380 | Msa0799710 | -0.828141 | 1.060303e-54 | -8.615850e-47 |
| Msa0039380 | Msa0837590 | -0.802604 | 5.185799e-49 | -8.615850e-47 |
| Msa0039380 | Msa0900320 | -0.844830 | 5.929173e-59 | -8.615850e-47 |
| Msa0039380 | Msa0925160 | -0.811256 | 7.666469e-51 | -8.615850e-47 |
| Msa0039380 | Msa0955260 | -0.813765 | 2.168736e-51 | -8.615850e-47 |
| Msa0039380 | Msa0958020 | -0.836463 | 9.221945e-57 | -8.615850e-47 |
| Msa0039380 | Msa0965960 | -0.859389 | 4.278071e-63 | -8.615850e-47 |
| Msa0039380 | Msa0971860 | -0.816283 | 5.989629e-52 | -8.615850e-47 |
| Msa0039380 | Msa0990520 | -0.838490 | 2.788112e-57 | -8.615850e-47 |
| Msa0039380 | Msa1001780 | -0.832786 | 7.748176e-56 | -8.615850e-47 |
| Msa0039380 | Msa1002040 | -0.809314 | 2.011320e-50 | -8.615850e-47 |
| Msa0039380 | Msa1013510 | -0.809845 | 1.547293e-50 | -8.615850e-47 |
| Msa0039380 | Msa1037060 | 0.823934 | 1.059964e-53 | -8.615850e-47 |
| Msa0039380 | Msa1038320 | -0.803246 | 3.819557e-49 | -8.615850e-47 |
| Msa0039380 | Msa1067430 | -0.812224 | 4.721608e-51 | -8.615850e-47 |
| Msa0039380 | Msa1077940 | 0.822917 | 1.832203e-53 | -8.615850e-47 |
| Msa0039380 | Msa1085590 | 0.826237 | 3.029677e-54 | -8.615850e-47 |
| Msa0039380 | Msa1119720 | -0.852213 | 5.349685e-61 | -8.615850e-47 |
| Msa0039380 | Msa1130660 | -0.803525 | 3.344640e-49 | -8.615850e-47 |
| Msa0039380 | Msa1138600 | -0.800201 | 1.610372e-48 | -8.615850e-47 |
| Msa0039380 | Msa1149760 | -0.824453 | 8.005923e-54 | -8.615850e-47 |
| Msa0039380 | Msa1157920 | -0.843540 | 1.315834e-58 | -8.615850e-47 |
| Msa0039380 | Msa1164800 | 0.831598 | 1.524459e-55 | -8.615850e-47 |
| Msa0039380 | Msa1166180 | -0.822943 | 1.807246e-53 | -8.615850e-47 |
| Msa0039380 | Msa1166280 | -0.822656 | 2.108045e-53 | -8.615850e-47 |
| Msa0039380 | Msa1183610 | -0.813036 | 3.136127e-51 | -8.615850e-47 |
| Msa0039380 | Msa1183760 | -0.805809 | 1.115577e-49 | -8.615850e-47 |
| Msa0039380 | Msa1204760 | 0.805258 | 1.456184e-49 | -8.615850e-47 |
| Msa0039380 | Msa1209390 | -0.804088 | 2.554921e-49 | -8.615850e-47 |
| Msa0039380 | Msa1215210 | -0.802372 | 5.787650e-49 | -8.615850e-47 |
| Msa0039380 | Msa1219780 | 0.833714 | 4.550850e-56 | -8.615850e-47 |
| Msa0039380 | Msa1222030 | 0.809447 | 1.884064e-50 | -8.615850e-47 |
| Msa0039380 | Msa1226600 | -0.803653 | 3.145756e-49 | -8.615850e-47 |
| Msa0039380 | Msa1263590 | -0.820844 | 5.532589e-53 | -8.615850e-47 |
| Msa0039380 | Msa1263670 | -0.820543 | 6.487365e-53 | -8.615850e-47 |
| Msa0039380 | Msa1266710 | 0.805462 | 1.319654e-49 | -8.615850e-47 |
| Msa0039380 | Msa1271600 | -0.809836 | 1.554065e-50 | -8.615850e-47 |
| Msa0039380 | Msa1298740 | -0.803800 | 2.933076e-49 | -8.615850e-47 |
| Msa0039380 | Msa1300880 | -0.815949 | 7.111506e-52 | -8.615850e-47 |
| Msa0039380 | Msa1335500 | 0.814922 | 1.203951e-51 | -8.615850e-47 |
| Msa0039380 | Msa1352290 | -0.834277 | 3.289471e-56 | -8.615850e-47 |
| Msa0039380 | Msa1367600 | -0.823917 | 1.070104e-53 | -8.615850e-47 |
| Msa0039380 | Msa1368730 | -0.818653 | 1.752142e-52 | -8.615850e-47 |
| Msa0039380 | Msa1374810 | -0.803070 | 4.154657e-49 | -8.615850e-47 |
| Msa0039380 | Msa1376640 | -0.813473 | 2.514413e-51 | -8.615850e-47 |
| Msa0039380 | Msa1381130 | -0.835293 | 1.825387e-56 | -8.615850e-47 |
| Msa0039380 | Msa1400700 | 0.807612 | 4.643379e-50 | -8.615850e-47 |
| Msa0039380 | Msa1406230 | -0.820670 | 6.066344e-53 | -8.615850e-47 |
| Msa0039380 | Msa1407210 | 0.822093 | 2.848500e-53 | -8.615850e-47 |
| Msa0039380 | Msa1410170 | -0.814497 | 1.494936e-51 | -8.615850e-47 |
| Msa0039380 | Msa1415250 | -0.808243 | 3.408859e-50 | -8.615850e-47 |
| Msa0039380 | Msa1423190 | -0.834153 | 3.533092e-56 | -8.615850e-47 |
| Msa0039380 | Msa1423550 | -0.843294 | 1.531225e-58 | -8.615850e-47 |
| Msa0039380 | Msa1435910 | -0.808163 | 3.544174e-50 | -8.615850e-47 |
| Msa0039380 | Msa1442300 | -0.802416 | 5.667892e-49 | -8.615850e-47 |
| Msa0039380 | Msa1449600 | -0.823065 | 1.692523e-53 | -8.615850e-47 |
| Msa0039380 | Msa1456830 | -0.800196 | 1.614345e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039380 | MtrunA17_Chr1g0203471 | 99.344 | 305 | 2 | 0 | 1 | 305 | 58 | 362 | 0.0 | 621 |
| Msa0039380 | MtrunA17_Chr1g0203481 | 91.475 | 305 | 26 | 0 | 1 | 305 | 1 | 305 | 0.0 | 572 |
| Msa0039380 | MtrunA17_Chr4g0055171 | 48.136 | 295 | 140 | 2 | 12 | 305 | 21 | 303 | 1.72e-97 | 289 |
| Msa0039380 | MtrunA17_Chr1g0203501 | 59.649 | 171 | 65 | 1 | 139 | 305 | 2 | 172 | 4.06e-65 | 202 |
| Msa0039380 | MtrunA17_Chr4g0019981 | 55.952 | 168 | 72 | 2 | 140 | 305 | 1 | 168 | 8.15e-60 | 188 |
| Msa0039380 | MtrunA17_Chr7g0246541 | 34.122 | 296 | 174 | 5 | 17 | 304 | 13 | 295 | 4.70e-44 | 152 |
| Msa0039380 | MtrunA17_Chr1g0159411 | 32.313 | 294 | 193 | 4 | 12 | 304 | 13 | 301 | 8.51e-41 | 144 |
| Msa0039380 | MtrunA17_Chr4g0019991 | 49.038 | 104 | 53 | 0 | 17 | 120 | 25 | 128 | 8.22e-28 | 104 |
| Msa0039380 | MtrunA17_Chr1g0203491 | 48.624 | 109 | 56 | 0 | 12 | 120 | 21 | 129 | 1.76e-27 | 103 |
| Msa0039380 | MtrunA17_Chr7g0245491 | 30.270 | 185 | 125 | 1 | 120 | 304 | 12 | 192 | 6.78e-25 | 99.0 |
| Msa0039380 | MtrunA17_Chr7g0245471 | 31.892 | 185 | 122 | 1 | 120 | 304 | 3 | 183 | 2.78e-24 | 97.1 |
| Msa0039380 | MtrunA17_Chr7g0245461 | 40.367 | 109 | 64 | 1 | 12 | 120 | 13 | 120 | 1.05e-20 | 85.9 |
| Msa0039380 | MtrunA17_Chr7g0245481 | 36.522 | 115 | 72 | 1 | 6 | 120 | 7 | 120 | 2.08e-17 | 76.6 |
| Msa0039380 | MtrunA17_Chr2g0285661 | 29.289 | 239 | 143 | 7 | 4 | 233 | 18 | 239 | 6.69e-17 | 79.7 |
| Msa0039380 | MtrunA17_Chr2g0285641 | 28.151 | 238 | 143 | 7 | 6 | 233 | 23 | 242 | 1.52e-16 | 79.0 |
| Msa0039380 | MtrunA17_Chr8g0382941 | 26.050 | 238 | 157 | 5 | 3 | 232 | 15 | 241 | 3.13e-16 | 77.8 |
| Msa0039380 | MtrunA17_Chr2g0285671 | 27.530 | 247 | 145 | 6 | 4 | 233 | 17 | 246 | 8.96e-14 | 70.9 |
| Msa0039380 | MtrunA17_Chr3g0119481 | 27.193 | 228 | 144 | 5 | 11 | 232 | 13 | 224 | 4.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039380 | AT3G48880.2 | 68.562 | 299 | 92 | 2 | 9 | 305 | 11 | 309 | 1.40e-152 | 429 |
| Msa0039380 | AT3G48880.1 | 68.562 | 299 | 92 | 2 | 9 | 305 | 11 | 309 | 1.40e-152 | 429 |
| Msa0039380 | AT3G48880.3 | 68.562 | 299 | 92 | 2 | 9 | 305 | 11 | 309 | 1.40e-152 | 429 |
| Msa0039380 | AT4G11580.1 | 29.532 | 342 | 188 | 11 | 1 | 303 | 4 | 331 | 8.95e-33 | 124 |
Find 108 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTTGGTCTCTTGAATT+TGG | 0.151821 | 1_1:+68937725 | Msa0039380:five_prime_UTR |
| TTAAAAGTTCGTATATTTAT+AGG | 0.195021 | 1_1:-68940359 | None:intergenic |
| AGGCTCAAGACTCTCAATTT+TGG | 0.223803 | 1_1:-68939249 | None:intergenic |
| TTCTTTCACCGAAACTTTAT+AGG | 0.224796 | 1_1:+68939800 | Msa0039380:three_prime_UTR |
| ACAAGTATGAGGAAGGATTT+TGG | 0.237709 | 1_1:+68939523 | Msa0039380:CDS |
| GCAATTTCCTCTAGAAAATA+TGG | 0.237803 | 1_1:-68939144 | None:intergenic |
| AGTTCAGAAATGAAAATCTT+TGG | 0.258183 | 1_1:-68940190 | None:intergenic |
| CTTGCTGTGATCCACTTCTT+TGG | 0.265127 | 1_1:+68938398 | Msa0039380:CDS |
| CTTCAGTGAACTCAAGATTA+TGG | 0.275898 | 1_1:+68939182 | Msa0039380:CDS |
| GTCCACCCCTTCCACCATTT+TGG | 0.276226 | 1_1:-68940093 | None:intergenic |
| TCAAGGAAATCTTCAATAAT+CGG | 0.286560 | 1_1:-68938516 | None:intergenic |
| AAATTTGAATGATTACAAAT+TGG | 0.309677 | 1_1:+68939667 | Msa0039380:three_prime_UTR |
| GGCAAGAATACCTAGATAAT+AGG | 0.324346 | 1_1:+68940320 | Msa0039380:intron |
| GGGATGAATTGTGCAACTTT+TGG | 0.327736 | 1_1:-68940169 | None:intergenic |
| ATTGGAGTTTGTCACCAAAA+TGG | 0.333519 | 1_1:+68940079 | Msa0039380:three_prime_UTR |
| GTGTTGTTGTGCCCTTTAAA+AGG | 0.338855 | 1_1:+68939689 | Msa0039380:three_prime_UTR |
| CGCGCAATCGAGAAGCCTTC+TGG | 0.341689 | 1_1:-68939425 | None:intergenic |
| TCTTAAGAATTTCAGAAAAC+AGG | 0.359870 | 1_1:+68938238 | Msa0039380:five_prime_UTR |
| ACGTAAACAAAAGGCTCTAA+TGG | 0.360702 | 1_1:-68938466 | None:intergenic |
| GACATATTCGAGTTAACTTC+TGG | 0.361591 | 1_1:+68938343 | Msa0039380:CDS |
| TATATCACATTGCATTCTAA+TGG | 0.362218 | 1_1:+68939344 | Msa0039380:CDS |
| GTTCAGAAATGAAAATCTTT+GGG | 0.376508 | 1_1:-68940189 | None:intergenic |
| CTCAAGTTTGATTGATTTGA+GGG | 0.378530 | 1_1:+68939904 | Msa0039380:three_prime_UTR |
| CACTCACGTACAAGTTGAAA+TGG | 0.379756 | 1_1:-68938573 | None:intergenic |
| TCTCAAGTTTGATTGATTTG+AGG | 0.380177 | 1_1:+68939903 | Msa0039380:three_prime_UTR |
| AAACTGTTCCTATAAAGTTT+CGG | 0.383190 | 1_1:-68939808 | None:intergenic |
| TTCGGTGTTCAACGCTATAT+AGG | 0.386217 | 1_1:+68939271 | Msa0039380:CDS |
| CACGAGGAGATGGGAGGATC+TGG | 0.389695 | 1_1:+68938285 | Msa0039380:CDS |
| GTGCTTGAAACTTGTATTAG+TGG | 0.393883 | 1_1:+68939874 | Msa0039380:three_prime_UTR |
| AAATCAAACAAAACAACTCT+TGG | 0.398497 | 1_1:-68937699 | None:intergenic |
| GGATCTGGACACAGATATAT+TGG | 0.398991 | 1_1:+68938300 | Msa0039380:CDS |
| TTCAGTGAACTCAAGATTAT+GGG | 0.400982 | 1_1:+68939183 | Msa0039380:CDS |
| AAGTTTCAAGCACAAATATT+CGG | 0.403757 | 1_1:-68939864 | None:intergenic |
| GCAAGAATACCTAGATAATA+GGG | 0.405032 | 1_1:+68940321 | Msa0039380:intron |
| GCATGGAGAATACCTTGAAC+AGG | 0.409246 | 1_1:+68940144 | Msa0039380:three_prime_UTR |
| AATCAAACAAAACAACTCTT+GGG | 0.413390 | 1_1:-68937698 | None:intergenic |
| CTTGGGGACTAAAGAAATCA+TGG | 0.422199 | 1_1:-68937681 | None:intergenic |
| TGTGCAAGGCAATCCGTTGC+TGG | 0.424432 | 1_1:+68939079 | Msa0039380:CDS |
| ACTCATTCTGCTCAGATTCA+AGG | 0.426417 | 1_1:-68938533 | None:intergenic |
| AATTGAGAGTCTTGAGCCTT+CGG | 0.435748 | 1_1:+68939253 | Msa0039380:CDS |
| CAAGGAAATCTTCAATAATC+GGG | 0.435917 | 1_1:-68938515 | None:intergenic |
| GAACTGATGAAGGGATAGTT+AGG | 0.442152 | 1_1:+68939496 | Msa0039380:CDS |
| AACGACTGGTTCTTCCGGCT+TGG | 0.442940 | 1_1:+68939034 | Msa0039380:CDS |
| TTGTTTCGAACACGAGGAGA+TGG | 0.448455 | 1_1:+68938275 | Msa0039380:CDS |
| GCTCAAACGACTGGTTCTTC+CGG | 0.448751 | 1_1:+68939029 | Msa0039380:CDS |
| AGTTAGGTGGTACAAGTATG+AGG | 0.451024 | 1_1:+68939512 | Msa0039380:CDS |
| TGGAACAGAATTAAAAGAAC+AGG | 0.456792 | 1_1:+68939054 | Msa0039380:CDS |
| TTGCTCATGTTTGTAGCGCA+TGG | 0.458078 | 1_1:+68938368 | Msa0039380:CDS |
| TCGGTGTTCAACGCTATATA+GGG | 0.478065 | 1_1:+68939272 | Msa0039380:CDS |
| AGCAGACAATAACGGCGATC+TGG | 0.486720 | 1_1:+68939578 | Msa0039380:exon |
| ATTTCAGAAAACAGGCGTAA+TGG | 0.497325 | 1_1:+68938246 | Msa0039380:exon |
| CTTCATCAGTTCTTGTACGT+TGG | 0.501934 | 1_1:-68939485 | None:intergenic |
| CTAAATGTTCTAAGCTGTCT+AGG | 0.503752 | 1_1:-68939311 | None:intergenic |
| ACAATAACGGCGATCTGGTA+TGG | 0.514029 | 1_1:+68939583 | Msa0039380:three_prime_UTR |
| AACGGCGATCTGGTATGGTC+TGG | 0.515550 | 1_1:+68939588 | Msa0039380:three_prime_UTR |
| CGTTCATCAACGTAAACAAA+AGG | 0.517545 | 1_1:-68938475 | None:intergenic |
| GGTTGATCAGAGGAAGTTGG+TGG | 0.522886 | 1_1:+68937746 | Msa0039380:five_prime_UTR |
| GCACTTTAAGCAGACAATAA+CGG | 0.523196 | 1_1:+68939570 | Msa0039380:exon |
| GAACCAGTCGTTTGAGCTGT+GGG | 0.524995 | 1_1:-68939023 | None:intergenic |
| TGTTTCGAACACGAGGAGAT+GGG | 0.527745 | 1_1:+68938276 | Msa0039380:CDS |
| TGTTTGTAGCGCATGGCGCA+TGG | 0.531694 | 1_1:+68938375 | Msa0039380:CDS |
| TTTGGTTGATCAGAGGAAGT+TGG | 0.535065 | 1_1:+68937743 | Msa0039380:five_prime_UTR |
| AAACACTGGACATGGATCCT+AGG | 0.535268 | 1_1:+68940234 | Msa0039380:three_prime_UTR |
| TGATTCTACTATTCGCCAGA+AGG | 0.543301 | 1_1:+68939410 | Msa0039380:CDS |
| AGGTGGTACAAGTATGAGGA+AGG | 0.544931 | 1_1:+68939516 | Msa0039380:CDS |
| TATTGTCTGCTTAAAGTGCA+AGG | 0.545483 | 1_1:-68939566 | None:intergenic |
| CATGGATCCTAGGCAGACAT+TGG | 0.547362 | 1_1:+68940244 | Msa0039380:three_prime_UTR |
| AATCCGTTGCTGGAAAGAGC+TGG | 0.549877 | 1_1:+68939089 | Msa0039380:CDS |
| ATTGTCTGCTTAAAGTGCAA+GGG | 0.551474 | 1_1:-68939565 | None:intergenic |
| CAACGTACAAGAACTGATGA+AGG | 0.552652 | 1_1:+68939486 | Msa0039380:CDS |
| TGTCACCAAAATGGTGGAAG+GGG | 0.554141 | 1_1:+68940088 | Msa0039380:three_prime_UTR |
| ATTATGTCCAATGTCTGCCT+AGG | 0.568954 | 1_1:-68940251 | None:intergenic |
| AGAACCAGTCGTTTGAGCTG+TGG | 0.570755 | 1_1:-68939024 | None:intergenic |
| TAAGAAGAATTTCAGCACAA+AGG | 0.570978 | 1_1:-68938220 | None:intergenic |
| GTAAATGCTAAAACTCAAGA+AGG | 0.571323 | 1_1:-68939945 | None:intergenic |
| GCGCGAATTTATCACATGCA+TGG | 0.572175 | 1_1:+68939443 | Msa0039380:CDS |
| ACTCCAGCTCTTTCCAGCAA+CGG | 0.573617 | 1_1:-68939092 | None:intergenic |
| CACCAAAATGGTGGAAGGGG+TGG | 0.578783 | 1_1:+68940091 | Msa0039380:three_prime_UTR |
| TCAAGCGTCTTCCAAAGAAG+TGG | 0.580522 | 1_1:-68938409 | None:intergenic |
| TTGTCACCAAAATGGTGGAA+GGG | 0.586547 | 1_1:+68940087 | Msa0039380:three_prime_UTR |
| TTTGTCACCAAAATGGTGGA+AGG | 0.586600 | 1_1:+68940086 | Msa0039380:three_prime_UTR |
| TTTCCTCTAGAAAATATGGC+GGG | 0.587537 | 1_1:-68939140 | None:intergenic |
| GGAGTTTGTCACCAAAATGG+TGG | 0.595934 | 1_1:+68940082 | Msa0039380:three_prime_UTR |
| GGACTAAAGAAATCATGGGT+TGG | 0.597039 | 1_1:-68937676 | None:intergenic |
| AATCAAAGGCATAACATGCA+AGG | 0.597892 | 1_1:+68939835 | Msa0039380:three_prime_UTR |
| TCTTGAATTTGGTTGATCAG+AGG | 0.602357 | 1_1:+68937736 | Msa0039380:five_prime_UTR |
| TATGGCGGGTTTGCTATACT+AGG | 0.604329 | 1_1:-68939126 | None:intergenic |
| GTGCCCACAGCTCAAACGAC+TGG | 0.606234 | 1_1:+68939020 | Msa0039380:CDS |
| TTAGCATTTACAATAATCTG+TGG | 0.609520 | 1_1:+68939957 | Msa0039380:three_prime_UTR |
| AGAGACACAAACACTGGACA+TGG | 0.614078 | 1_1:+68940226 | Msa0039380:three_prime_UTR |
| CATGGAGAATACCTTGAACA+GGG | 0.618494 | 1_1:+68940145 | Msa0039380:three_prime_UTR |
| TATATAGCGTTGAACACCGA+AGG | 0.621770 | 1_1:-68939269 | None:intergenic |
| TAAAAGAACAGGAATGTGCA+AGG | 0.624054 | 1_1:+68939065 | Msa0039380:CDS |
| AGTTGACATACACTGCTGAA+AGG | 0.630322 | 1_1:+68938602 | Msa0039380:CDS |
| AAGACGTTGTTTCGAACACG+AGG | 0.632817 | 1_1:+68938269 | Msa0039380:CDS |
| TTGGGGACTAAAGAAATCAT+GGG | 0.634520 | 1_1:-68937680 | None:intergenic |
| TCAAGTTTGATTGATTTGAG+GGG | 0.635870 | 1_1:+68939905 | Msa0039380:three_prime_UTR |
| ATCAAACAAAACAACTCTTG+GGG | 0.638711 | 1_1:-68937697 | None:intergenic |
| AAGGCATAACATGCAAGGTG+AGG | 0.650786 | 1_1:+68939840 | Msa0039380:three_prime_UTR |
| TCAGTGAACTCAAGATTATG+GGG | 0.652634 | 1_1:+68939184 | Msa0039380:CDS |
| TTCGAACACGAGGAGATGGG+AGG | 0.657865 | 1_1:+68938279 | Msa0039380:CDS |
| AACGTACAAGAACTGATGAA+GGG | 0.659917 | 1_1:+68939487 | Msa0039380:CDS |
| TCAAGAAGGATTGTGTGTGA+AGG | 0.663634 | 1_1:-68939931 | None:intergenic |
| CTGATGAAGGGATAGTTAGG+TGG | 0.665188 | 1_1:+68939499 | Msa0039380:CDS |
| ATGGAGAATACCTTGAACAG+GGG | 0.665558 | 1_1:+68940146 | Msa0039380:three_prime_UTR |
| ATTTCCTCTAGAAAATATGG+CGG | 0.666839 | 1_1:-68939141 | None:intergenic |
| GAAGCAAAGAAGATGTCACA+TGG | 0.687775 | 1_1:-68939207 | None:intergenic |
| ACGTGTAGAGACACAAACAC+TGG | 0.698553 | 1_1:+68940220 | Msa0039380:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTTTGTTTTTTTT+TGG | + | chr1_1:68937788-68937807 | Msa0039380:intron | 10.0% |
| !!! | AAATTAGAATTTTTTGTATT+AGG | + | chr1_1:68937840-68937859 | Msa0039380:intron | 10.0% |
| !! | AAAACAAAAAAAACAATAAG+TGG | - | chr1_1:68937784-68937803 | None:intergenic | 15.0% |
| !!! | CTCTAAATATATTTTAAAGT+TGG | - | chr1_1:68938633-68938652 | None:intergenic | 15.0% |
| !! | AATATATTTAGAGAGATTAA+TGG | + | chr1_1:68938640-68938659 | Msa0039380:intron | 15.0% |
| !!! | TTATTTTTGAAAAGATAATG+CGG | + | chr1_1:68938912-68938931 | Msa0039380:intron | 15.0% |
| !!! | TTGATAATTTTTTTATGTTG+AGG | - | chr1_1:68939384-68939403 | None:intergenic | 15.0% |
| !! | AAATTTGAATGATTACAAAT+TGG | + | chr1_1:68939667-68939686 | Msa0039380:three_prime_UTR | 15.0% |
| !! | TTAAAAGTTCGTATATTTAT+AGG | - | chr1_1:68940362-68940381 | None:intergenic | 15.0% |
| !!! | TTGTTTGATTTTTCATATCT+TGG | + | chr1_1:68937711-68937730 | Msa0039380:five_prime_UTR | 20.0% |
| !!! | TAGAATTTTTTGTATTAGGA+AGG | + | chr1_1:68937844-68937863 | Msa0039380:intron | 20.0% |
| !!! | AACTTTAACAGTGTTTTTTT+TGG | + | chr1_1:68937952-68937971 | Msa0039380:intron | 20.0% |
| !!! | ATTTGTTAATCTCTTAACTT+TGG | + | chr1_1:68938064-68938083 | Msa0039380:intron | 20.0% |
| !!! | CTTACTTTTTGTCTTAAATT+TGG | + | chr1_1:68938183-68938202 | Msa0039380:intron | 20.0% |
| !!! | TTTGACGGTTTTTAAATAAA+AGG | - | chr1_1:68938743-68938762 | None:intergenic | 20.0% |
| !!! | TAATTTTTTTATGTTGAGGA+GGG | - | chr1_1:68939380-68939399 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTTATGTTGAGG+AGG | - | chr1_1:68939381-68939400 | None:intergenic | 20.0% |
| !!! | TTTAACAAACTCCTTTTAAA+GGG | - | chr1_1:68939703-68939722 | None:intergenic | 20.0% |
| !!! | ATTTAACAAACTCCTTTTAA+AGG | - | chr1_1:68939704-68939723 | None:intergenic | 20.0% |
| !!! | TTGTATAGAATTGTTATTGA+AGG | + | chr1_1:68940035-68940054 | Msa0039380:intron | 20.0% |
| !!! | TGTATAGAATTGTTATTGAA+GGG | + | chr1_1:68940036-68940055 | Msa0039380:intron | 20.0% |
| !! | TCTAATGTAAAAAACAATGT+AGG | + | chr1_1:68940294-68940313 | Msa0039380:intron | 20.0% |
| ! | AATCAAACAAAACAACTCTT+GGG | - | chr1_1:68937701-68937720 | None:intergenic | 25.0% |
| ! | AAATCAAACAAAACAACTCT+TGG | - | chr1_1:68937702-68937721 | None:intergenic | 25.0% |
| !! | TTTTGTATTAGGAAGGATAA+TGG | + | chr1_1:68937851-68937870 | Msa0039380:intron | 25.0% |
| !!! | TGTTTTTTTTGGAGAGTTTA+TGG | + | chr1_1:68937963-68937982 | Msa0039380:intron | 25.0% |
| !! | GTTTTACCCTTTGTTAAATT+CGG | + | chr1_1:68938101-68938120 | Msa0039380:intron | 25.0% |
| ! | TTAAGCATAAACCTAAAAAC+TGG | - | chr1_1:68938162-68938181 | None:intergenic | 25.0% |
| !!! | GTCTTAAATTTGGTTTTTGT+AGG | + | chr1_1:68938193-68938212 | Msa0039380:intron | 25.0% |
| ! | TCTTAAGAATTTCAGAAAAC+AGG | + | chr1_1:68938238-68938257 | Msa0039380:five_prime_UTR | 25.0% |
| ! | TCAAGGAAATCTTCAATAAT+CGG | - | chr1_1:68938519-68938538 | None:intergenic | 25.0% |
| !!! | TATGCAGTTATTTGTTATGT+TGG | - | chr1_1:68938716-68938735 | None:intergenic | 25.0% |
| ! | TATATCACATTGCATTCTAA+TGG | + | chr1_1:68939344-68939363 | Msa0039380:CDS | 25.0% |
| !!! | AATTTTTTTATGTTGAGGAG+GGG | - | chr1_1:68939379-68939398 | None:intergenic | 25.0% |
| !!! | TTTTGTGCTCTAAATTTAGT+TGG | + | chr1_1:68939753-68939772 | Msa0039380:three_prime_UTR | 25.0% |
| ! | AAACTGTTCCTATAAAGTTT+CGG | - | chr1_1:68939811-68939830 | None:intergenic | 25.0% |
| ! | AAGTTTCAAGCACAAATATT+CGG | - | chr1_1:68939867-68939886 | None:intergenic | 25.0% |
| ! | TTAGCATTTACAATAATCTG+TGG | + | chr1_1:68939957-68939976 | Msa0039380:three_prime_UTR | 25.0% |
| !! | GTATAGAATTGTTATTGAAG+GGG | + | chr1_1:68940037-68940056 | Msa0039380:intron | 25.0% |
| !! | TATAGAATTGTTATTGAAGG+GGG | + | chr1_1:68940038-68940057 | Msa0039380:intron | 25.0% |
| ! | GTTCAGAAATGAAAATCTTT+GGG | - | chr1_1:68940192-68940211 | None:intergenic | 25.0% |
| ! | AGTTCAGAAATGAAAATCTT+TGG | - | chr1_1:68940193-68940212 | None:intergenic | 25.0% |
| !! | AGATTTTCATTTCTGAACTA+TGG | + | chr1_1:68940194-68940213 | Msa0039380:three_prime_UTR | 25.0% |
| ! | CATATTTAACCCTATTATCT+AGG | - | chr1_1:68940333-68940352 | None:intergenic | 25.0% |
| ATCAAACAAAACAACTCTTG+GGG | - | chr1_1:68937700-68937719 | None:intergenic | 30.0% | |
| ATATCTTGGTCTCTTGAATT+TGG | + | chr1_1:68937725-68937744 | Msa0039380:five_prime_UTR | 30.0% | |
| !! | TTAGGAAGGATAATGGAATT+TGG | + | chr1_1:68937858-68937877 | Msa0039380:intron | 30.0% |
| ! | CGTTTTCCGAATTTAACAAA+GGG | - | chr1_1:68938110-68938129 | None:intergenic | 30.0% |
| ! | ACGTTTTCCGAATTTAACAA+AGG | - | chr1_1:68938111-68938130 | None:intergenic | 30.0% |
| TAAGAAGAATTTCAGCACAA+AGG | - | chr1_1:68938223-68938242 | None:intergenic | 30.0% | |
| CAAGGAAATCTTCAATAATC+GGG | - | chr1_1:68938518-68938537 | None:intergenic | 30.0% | |
| ! | TTATGTTGGTGAGTTCTAAT+TGG | - | chr1_1:68938702-68938721 | None:intergenic | 30.0% |
| ! | GACGGTTTTTAAATAAAAGG+CGG | - | chr1_1:68938740-68938759 | None:intergenic | 30.0% |
| CTAGATTGAAGAATTGTGAT+CGG | + | chr1_1:68938772-68938791 | Msa0039380:intron | 30.0% | |
| ! | GATTCAAGTTATGAGATTGA+TGG | - | chr1_1:68938845-68938864 | None:intergenic | 30.0% |
| TTATTAGCACTCCTTCAAAA+TGG | + | chr1_1:68938948-68938967 | Msa0039380:intron | 30.0% | |
| ! | CATTGTACTATCCATTTTGA+AGG | - | chr1_1:68938962-68938981 | None:intergenic | 30.0% |
| TGGAACAGAATTAAAAGAAC+AGG | + | chr1_1:68939054-68939073 | Msa0039380:CDS | 30.0% | |
| ! | ATTTCCTCTAGAAAATATGG+CGG | - | chr1_1:68939144-68939163 | None:intergenic | 30.0% |
| ! | GCAATTTCCTCTAGAAAATA+TGG | - | chr1_1:68939147-68939166 | None:intergenic | 30.0% |
| TTCAGTGAACTCAAGATTAT+GGG | + | chr1_1:68939183-68939202 | Msa0039380:CDS | 30.0% | |
| !!! | ATTTTTTTATGTTGAGGAGG+GGG | - | chr1_1:68939378-68939397 | None:intergenic | 30.0% |
| TTCTTTCACCGAAACTTTAT+AGG | + | chr1_1:68939800-68939819 | Msa0039380:three_prime_UTR | 30.0% | |
| !!! | GGAACAGTTTTGAAAATCAA+AGG | + | chr1_1:68939821-68939840 | Msa0039380:three_prime_UTR | 30.0% |
| !! | TCTCAAGTTTGATTGATTTG+AGG | + | chr1_1:68939903-68939922 | Msa0039380:three_prime_UTR | 30.0% |
| !! | CTCAAGTTTGATTGATTTGA+GGG | + | chr1_1:68939904-68939923 | Msa0039380:three_prime_UTR | 30.0% |
| !! | TCAAGTTTGATTGATTTGAG+GGG | + | chr1_1:68939905-68939924 | Msa0039380:three_prime_UTR | 30.0% |
| GTAAATGCTAAAACTCAAGA+AGG | - | chr1_1:68939948-68939967 | None:intergenic | 30.0% | |
| AACAATTCTATACAAGACAG+TGG | - | chr1_1:68940030-68940049 | None:intergenic | 30.0% | |
| !!! | TTGTGTTTTAGGAGCATAAT+TGG | + | chr1_1:68940061-68940080 | Msa0039380:intron | 30.0% |
| ! | CTTTTCTTTGTAAACAAGCA+TGG | + | chr1_1:68940127-68940146 | Msa0039380:three_prime_UTR | 30.0% |
| TGTAAAAAACAATGTAGGTC+TGG | + | chr1_1:68940299-68940318 | Msa0039380:intron | 30.0% | |
| GCAAGAATACCTAGATAATA+GGG | + | chr1_1:68940321-68940340 | Msa0039380:intron | 30.0% | |
| TTGGGGACTAAAGAAATCAT+GGG | - | chr1_1:68937683-68937702 | None:intergenic | 35.0% | |
| TCTTGAATTTGGTTGATCAG+AGG | + | chr1_1:68937736-68937755 | Msa0039380:five_prime_UTR | 35.0% | |
| ! | ATGCTTCTACTCCAGTTTTT+AGG | + | chr1_1:68938148-68938167 | Msa0039380:intron | 35.0% |
| ATTTCAGAAAACAGGCGTAA+TGG | + | chr1_1:68938246-68938265 | Msa0039380:exon | 35.0% | |
| ! | GACATATTCGAGTTAACTTC+TGG | + | chr1_1:68938343-68938362 | Msa0039380:CDS | 35.0% |
| ! | ACGTAAACAAAAGGCTCTAA+TGG | - | chr1_1:68938469-68938488 | None:intergenic | 35.0% |
| CGTTCATCAACGTAAACAAA+AGG | - | chr1_1:68938478-68938497 | None:intergenic | 35.0% | |
| AGTGTAAAACAACTTTCCAC+TGG | - | chr1_1:68938674-68938693 | None:intergenic | 35.0% | |
| ATCTAGCGAATCATGTTTGA+CGG | - | chr1_1:68938758-68938777 | None:intergenic | 35.0% | |
| ! | AAGAATTGTGATCGGTTCAT+CGG | + | chr1_1:68938780-68938799 | Msa0039380:intron | 35.0% |
| ! | AGGGGTGAGATTAGTTATTT+AGG | - | chr1_1:68938992-68939011 | None:intergenic | 35.0% |
| !! | CTTTTAATTCTGTTCCAAGC+CGG | - | chr1_1:68939051-68939070 | None:intergenic | 35.0% |
| TAAAAGAACAGGAATGTGCA+AGG | + | chr1_1:68939065-68939084 | Msa0039380:CDS | 35.0% | |
| ! | TTTCCTCTAGAAAATATGGC+GGG | - | chr1_1:68939143-68939162 | None:intergenic | 35.0% |
| CTTCAGTGAACTCAAGATTA+TGG | + | chr1_1:68939182-68939201 | Msa0039380:CDS | 35.0% | |
| TCAGTGAACTCAAGATTATG+GGG | + | chr1_1:68939184-68939203 | Msa0039380:CDS | 35.0% | |
| ! | CTAAATGTTCTAAGCTGTCT+AGG | - | chr1_1:68939314-68939333 | None:intergenic | 35.0% |
| !!! | TTTTTTTATGTTGAGGAGGG+GGG | - | chr1_1:68939377-68939396 | None:intergenic | 35.0% |
| AACGTACAAGAACTGATGAA+GGG | + | chr1_1:68939487-68939506 | Msa0039380:CDS | 35.0% | |
| ! | ACAAGTATGAGGAAGGATTT+TGG | + | chr1_1:68939523-68939542 | Msa0039380:CDS | 35.0% |
| !! | AGGATTTTGGAAAGAAGATG+AGG | + | chr1_1:68939536-68939555 | Msa0039380:CDS | 35.0% |
| ATTGTCTGCTTAAAGTGCAA+GGG | - | chr1_1:68939568-68939587 | None:intergenic | 35.0% | |
| TATTGTCTGCTTAAAGTGCA+AGG | - | chr1_1:68939569-68939588 | None:intergenic | 35.0% | |
| GCACTTTAAGCAGACAATAA+CGG | + | chr1_1:68939570-68939589 | Msa0039380:exon | 35.0% | |
| ! | GTCTGGTTGTTGAACATTTT+CGG | + | chr1_1:68939605-68939624 | Msa0039380:three_prime_UTR | 35.0% |
| ! | TCTGGTTGTTGAACATTTTC+GGG | + | chr1_1:68939606-68939625 | Msa0039380:three_prime_UTR | 35.0% |
| ! | AATCAAAGGCATAACATGCA+AGG | + | chr1_1:68939835-68939854 | Msa0039380:three_prime_UTR | 35.0% |
| GTGCTTGAAACTTGTATTAG+TGG | + | chr1_1:68939874-68939893 | Msa0039380:three_prime_UTR | 35.0% | |
| ATTGGAGTTTGTCACCAAAA+TGG | + | chr1_1:68940079-68940098 | Msa0039380:three_prime_UTR | 35.0% | |
| GGCAAGAATACCTAGATAAT+AGG | + | chr1_1:68940320-68940339 | Msa0039380:intron | 35.0% | |
| GGACTAAAGAAATCATGGGT+TGG | - | chr1_1:68937679-68937698 | None:intergenic | 40.0% | |
| CTTGGGGACTAAAGAAATCA+TGG | - | chr1_1:68937684-68937703 | None:intergenic | 40.0% | |
| TTTGGTTGATCAGAGGAAGT+TGG | + | chr1_1:68937743-68937762 | Msa0039380:five_prime_UTR | 40.0% | |
| GGATCTGGACACAGATATAT+TGG | + | chr1_1:68938300-68938319 | Msa0039380:CDS | 40.0% | |
| ACTCATTCTGCTCAGATTCA+AGG | - | chr1_1:68938536-68938555 | None:intergenic | 40.0% | |
| ! | CACTCACGTACAAGTTGAAA+TGG | - | chr1_1:68938576-68938595 | None:intergenic | 40.0% |
| AGTTGACATACACTGCTGAA+AGG | + | chr1_1:68938602-68938621 | Msa0039380:CDS | 40.0% | |
| CTACGAAACATCGTACGAAA+AGG | - | chr1_1:68938874-68938893 | None:intergenic | 40.0% | |
| ! | CTTTTCGTACGATGTTTCGT+AGG | + | chr1_1:68938872-68938891 | Msa0039380:intron | 40.0% |
| !! | AGGAGTGCTAATAACTAGCA+AGG | - | chr1_1:68938942-68938961 | None:intergenic | 40.0% |
| ! | AAACCCGCCATATTTTCTAG+AGG | + | chr1_1:68939137-68939156 | Msa0039380:CDS | 40.0% |
| GAAGCAAAGAAGATGTCACA+TGG | - | chr1_1:68939210-68939229 | None:intergenic | 40.0% | |
| ! | AGGCTCAAGACTCTCAATTT+TGG | - | chr1_1:68939252-68939271 | None:intergenic | 40.0% |
| AATTGAGAGTCTTGAGCCTT+CGG | + | chr1_1:68939253-68939272 | Msa0039380:CDS | 40.0% | |
| ! | TATATAGCGTTGAACACCGA+AGG | - | chr1_1:68939272-68939291 | None:intergenic | 40.0% |
| !! | TTCGGTGTTCAACGCTATAT+AGG | + | chr1_1:68939271-68939290 | Msa0039380:CDS | 40.0% |
| ! | TCGGTGTTCAACGCTATATA+GGG | + | chr1_1:68939272-68939291 | Msa0039380:CDS | 40.0% |
| TGATTCTACTATTCGCCAGA+AGG | + | chr1_1:68939410-68939429 | Msa0039380:CDS | 40.0% | |
| CTTCATCAGTTCTTGTACGT+TGG | - | chr1_1:68939488-68939507 | None:intergenic | 40.0% | |
| CAACGTACAAGAACTGATGA+AGG | + | chr1_1:68939486-68939505 | Msa0039380:CDS | 40.0% | |
| GAACTGATGAAGGGATAGTT+AGG | + | chr1_1:68939496-68939515 | Msa0039380:CDS | 40.0% | |
| AGTTAGGTGGTACAAGTATG+AGG | + | chr1_1:68939512-68939531 | Msa0039380:CDS | 40.0% | |
| ! | CTGGTTGTTGAACATTTTCG+GGG | + | chr1_1:68939607-68939626 | Msa0039380:three_prime_UTR | 40.0% |
| ! | GTGTTGTTGTGCCCTTTAAA+AGG | + | chr1_1:68939689-68939708 | Msa0039380:three_prime_UTR | 40.0% |
| TCAAGAAGGATTGTGTGTGA+AGG | - | chr1_1:68939934-68939953 | None:intergenic | 40.0% | |
| ! | ATTGAAGGGGGTTGTGTTTT+AGG | + | chr1_1:68940050-68940069 | Msa0039380:intron | 40.0% |
| ! | TTTGTCACCAAAATGGTGGA+AGG | + | chr1_1:68940086-68940105 | Msa0039380:three_prime_UTR | 40.0% |
| ! | TTGTCACCAAAATGGTGGAA+GGG | + | chr1_1:68940087-68940106 | Msa0039380:three_prime_UTR | 40.0% |
| CATGGAGAATACCTTGAACA+GGG | + | chr1_1:68940145-68940164 | Msa0039380:three_prime_UTR | 40.0% | |
| ATGGAGAATACCTTGAACAG+GGG | + | chr1_1:68940146-68940165 | Msa0039380:three_prime_UTR | 40.0% | |
| ! | GGGATGAATTGTGCAACTTT+TGG | - | chr1_1:68940172-68940191 | None:intergenic | 40.0% |
| ATTATGTCCAATGTCTGCCT+AGG | - | chr1_1:68940254-68940273 | None:intergenic | 40.0% | |
| ! | AAGACGTTGTTTCGAACACG+AGG | + | chr1_1:68938269-68938288 | Msa0039380:CDS | 45.0% |
| TTGTTTCGAACACGAGGAGA+TGG | + | chr1_1:68938275-68938294 | Msa0039380:CDS | 45.0% | |
| TGTTTCGAACACGAGGAGAT+GGG | + | chr1_1:68938276-68938295 | Msa0039380:CDS | 45.0% | |
| TTGCTCATGTTTGTAGCGCA+TGG | + | chr1_1:68938368-68938387 | Msa0039380:CDS | 45.0% | |
| ! | CTTGCTGTGATCCACTTCTT+TGG | + | chr1_1:68938398-68938417 | Msa0039380:CDS | 45.0% |
| TCAAGCGTCTTCCAAAGAAG+TGG | - | chr1_1:68938412-68938431 | None:intergenic | 45.0% | |
| ! | ATTAATGGATGCACTGCCAG+TGG | + | chr1_1:68938655-68938674 | Msa0039380:intron | 45.0% |
| CGAAACATCGTACGAAAAGG+TGG | - | chr1_1:68938871-68938890 | None:intergenic | 45.0% | |
| !! | TATGGCGGGTTTGCTATACT+AGG | - | chr1_1:68939129-68939148 | None:intergenic | 45.0% |
| GCGCGAATTTATCACATGCA+TGG | + | chr1_1:68939443-68939462 | Msa0039380:CDS | 45.0% | |
| CTGATGAAGGGATAGTTAGG+TGG | + | chr1_1:68939499-68939518 | Msa0039380:CDS | 45.0% | |
| AGGTGGTACAAGTATGAGGA+AGG | + | chr1_1:68939516-68939535 | Msa0039380:CDS | 45.0% | |
| ACAATAACGGCGATCTGGTA+TGG | + | chr1_1:68939583-68939602 | Msa0039380:three_prime_UTR | 45.0% | |
| AAGGCATAACATGCAAGGTG+AGG | + | chr1_1:68939840-68939859 | Msa0039380:three_prime_UTR | 45.0% | |
| GGAGTTTGTCACCAAAATGG+TGG | + | chr1_1:68940082-68940101 | Msa0039380:three_prime_UTR | 45.0% | |
| ! | TGTCACCAAAATGGTGGAAG+GGG | + | chr1_1:68940088-68940107 | Msa0039380:three_prime_UTR | 45.0% |
| GCATGGAGAATACCTTGAAC+AGG | + | chr1_1:68940144-68940163 | Msa0039380:three_prime_UTR | 45.0% | |
| ACGTGTAGAGACACAAACAC+TGG | + | chr1_1:68940220-68940239 | Msa0039380:three_prime_UTR | 45.0% | |
| AGAGACACAAACACTGGACA+TGG | + | chr1_1:68940226-68940245 | Msa0039380:three_prime_UTR | 45.0% | |
| AAACACTGGACATGGATCCT+AGG | + | chr1_1:68940234-68940253 | Msa0039380:three_prime_UTR | 45.0% | |
| GGTTGATCAGAGGAAGTTGG+TGG | + | chr1_1:68937746-68937765 | Msa0039380:five_prime_UTR | 50.0% | |
| CTAATCTCACCCCTTGTTGC+AGG | + | chr1_1:68938998-68939017 | Msa0039380:intron | 50.0% | |
| GAACCAGTCGTTTGAGCTGT+GGG | - | chr1_1:68939026-68939045 | None:intergenic | 50.0% | |
| AGAACCAGTCGTTTGAGCTG+TGG | - | chr1_1:68939027-68939046 | None:intergenic | 50.0% | |
| ! | GCTCAAACGACTGGTTCTTC+CGG | + | chr1_1:68939029-68939048 | Msa0039380:CDS | 50.0% |
| AATCCGTTGCTGGAAAGAGC+TGG | + | chr1_1:68939089-68939108 | Msa0039380:CDS | 50.0% | |
| ACTCCAGCTCTTTCCAGCAA+CGG | - | chr1_1:68939095-68939114 | None:intergenic | 50.0% | |
| AGCAGACAATAACGGCGATC+TGG | + | chr1_1:68939578-68939597 | Msa0039380:exon | 50.0% | |
| ! | CAACTTTTGGCCCCTGTTCA+AGG | - | chr1_1:68940159-68940178 | None:intergenic | 50.0% |
| CATGGATCCTAGGCAGACAT+TGG | + | chr1_1:68940244-68940263 | Msa0039380:three_prime_UTR | 50.0% | |
| TTCGAACACGAGGAGATGGG+AGG | + | chr1_1:68938279-68938298 | Msa0039380:CDS | 55.0% | |
| TGTTTGTAGCGCATGGCGCA+TGG | + | chr1_1:68938375-68938394 | Msa0039380:CDS | 55.0% | |
| ! | AACGACTGGTTCTTCCGGCT+TGG | + | chr1_1:68939034-68939053 | Msa0039380:CDS | 55.0% |
| TGTGCAAGGCAATCCGTTGC+TGG | + | chr1_1:68939079-68939098 | Msa0039380:CDS | 55.0% | |
| AACGGCGATCTGGTATGGTC+TGG | + | chr1_1:68939588-68939607 | Msa0039380:three_prime_UTR | 55.0% | |
| ! | CACCAAAATGGTGGAAGGGG+TGG | + | chr1_1:68940091-68940110 | Msa0039380:three_prime_UTR | 55.0% |
| ! | GTCCACCCCTTCCACCATTT+TGG | - | chr1_1:68940096-68940115 | None:intergenic | 55.0% |
| CACGAGGAGATGGGAGGATC+TGG | + | chr1_1:68938285-68938304 | Msa0039380:CDS | 60.0% | |
| CTGTGGGCACCTGCAACAAG+GGG | - | chr1_1:68939010-68939029 | None:intergenic | 60.0% | |
| GCTGTGGGCACCTGCAACAA+GGG | - | chr1_1:68939011-68939030 | None:intergenic | 60.0% | |
| AGCTGTGGGCACCTGCAACA+AGG | - | chr1_1:68939012-68939031 | None:intergenic | 60.0% | |
| GTGCCCACAGCTCAAACGAC+TGG | + | chr1_1:68939020-68939039 | Msa0039380:CDS | 60.0% | |
| CGCGCAATCGAGAAGCCTTC+TGG | - | chr1_1:68939428-68939447 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 68937502 | 68940387 | 68937502 | ID=Msa0039380;Name=Msa0039380 |
| chr1_1 | mRNA | 68937502 | 68940387 | 68937502 | ID=Msa0039380-mRNA-1;Parent=Msa0039380;Name=Msa0039380-mRNA-1;_AED=0.22;_eAED=0.22;_QI=316|1|1|1|0.25|0|5|682|305 |
| chr1_1 | exon | 68937502 | 68937767 | 68937502 | ID=Msa0039380-mRNA-1:exon:22589;Parent=Msa0039380-mRNA-1 |
| chr1_1 | exon | 68938215 | 68938623 | 68938215 | ID=Msa0039380-mRNA-1:exon:22590;Parent=Msa0039380-mRNA-1 |
| chr1_1 | exon | 68939020 | 68939978 | 68939020 | ID=Msa0039380-mRNA-1:exon:22591;Parent=Msa0039380-mRNA-1 |
| chr1_1 | exon | 68940072 | 68940299 | 68940072 | ID=Msa0039380-mRNA-1:exon:22592;Parent=Msa0039380-mRNA-1 |
| chr1_1 | exon | 68940334 | 68940387 | 68940334 | ID=Msa0039380-mRNA-1:exon:22593;Parent=Msa0039380-mRNA-1 |
| chr1_1 | five_prime_UTR | 68937502 | 68937767 | 68937502 | ID=Msa0039380-mRNA-1:five_prime_utr;Parent=Msa0039380-mRNA-1 |
| chr1_1 | five_prime_UTR | 68938215 | 68938264 | 68938215 | ID=Msa0039380-mRNA-1:five_prime_utr;Parent=Msa0039380-mRNA-1 |
| chr1_1 | CDS | 68938265 | 68938623 | 68938265 | ID=Msa0039380-mRNA-1:cds;Parent=Msa0039380-mRNA-1 |
| chr1_1 | CDS | 68939020 | 68939578 | 68939020 | ID=Msa0039380-mRNA-1:cds;Parent=Msa0039380-mRNA-1 |
| chr1_1 | three_prime_UTR | 68939579 | 68939978 | 68939579 | ID=Msa0039380-mRNA-1:three_prime_utr;Parent=Msa0039380-mRNA-1 |
| chr1_1 | three_prime_UTR | 68940072 | 68940299 | 68940072 | ID=Msa0039380-mRNA-1:three_prime_utr;Parent=Msa0039380-mRNA-1 |
| chr1_1 | three_prime_UTR | 68940334 | 68940387 | 68940334 | ID=Msa0039380-mRNA-1:three_prime_utr;Parent=Msa0039380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
