AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601780 MtrunA17_Chr4g0028871 97.619 84 2 0 1 84 1 84 1.79e-55 170
Msa0601780 MtrunA17_Chr2g0326841 90.476 84 8 0 1 84 1 84 2.21e-51 159
Msa0601780 MtrunA17_Chr1g0181131 85.714 84 12 0 1 84 1 84 1.35e-48 153
Msa0601780 MtrunA17_Chr7g0264181 86.076 79 11 0 6 84 7 85 3.67e-46 147
Msa0601780 MtrunA17_Chr1g0177391 75.949 79 19 0 6 84 2 80 3.76e-41 134
Msa0601780 MtrunA17_Chr3g0142491 69.048 84 26 0 1 84 3 86 5.05e-39 129
Msa0601780 MtrunA17_Chr1g0151201 68.421 76 22 1 11 84 7 82 6.24e-34 115
Msa0601780 MtrunA17_Chr1g0156401 76.087 46 11 0 40 85 1 46 1.85e-20 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601780 AT2G28305.2 89.474 76 8 0 9 84 4 79 3.65e-46 145
Msa0601780 AT2G28305.3 89.474 76 8 0 9 84 4 79 4.29e-46 146
Msa0601780 AT2G28305.1 89.474 76 8 0 9 84 4 79 1.25e-45 145
Msa0601780 AT2G37210.2 84.615 78 12 0 7 84 8 85 2.33e-45 145
Msa0601780 AT2G37210.1 84.615 78 12 0 7 84 8 85 2.40e-45 145
Msa0601780 AT3G53450.1 81.176 85 15 1 1 84 1 85 5.66e-44 141
Msa0601780 AT5G06300.1 77.215 79 18 0 6 84 2 80 1.25e-40 133
Msa0601780 AT2G35990.1 69.620 79 24 0 6 84 2 80 7.71e-40 130
Msa0601780 AT5G03270.2 73.171 82 22 0 3 84 9 90 2.22e-38 126
Msa0601780 AT5G03270.1 73.171 82 22 0 3 84 9 90 2.50e-38 126
Msa0601780 AT5G11950.1 64.935 77 27 0 8 84 5 81 8.61e-34 115
Msa0601780 AT5G11950.2 64.935 77 27 0 8 84 5 81 8.61e-34 115
Msa0601780 AT5G11950.3 64.935 77 27 0 8 84 5 81 8.61e-34 115
Msa0601780 AT4G35190.2 64.557 79 28 0 6 84 2 80 9.29e-34 115
Msa0601780 AT4G35190.1 64.557 79 28 0 6 84 2 80 1.95e-33 115

Find 173 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATTTGGTTTA+TGG 0.095929 4_2:+44793036 Msa0601780:CDS
TCAACATCACATTCAATTTC+TGG 0.137162 4_2:+44793555 Msa0601780:three_prime_UTR
AATAATTACATTTCACTTAA+AGG 0.164679 4_2:-44793631 None:intergenic
TTTGATACAACCTTCATTCT+AGG 0.189812 4_2:-44793532 None:intergenic
GTTGATATATCTTATCAAAT+TGG 0.211531 4_2:+44798754 Msa0601780:three_prime_UTR
ACAATTATATGACGAGCTTT+AGG 0.212084 4_2:-44797680 None:intergenic
TTACAATAACTGTATTATTT+TGG 0.220659 4_2:-44794347 None:intergenic
TTGTAATTTGTGTAATAATT+TGG 0.251829 4_2:+44794836 Msa0601780:three_prime_UTR
GAGTGGAAAATCAATATATT+TGG 0.283593 4_2:-44794009 None:intergenic
CAAAACAATCTATATATAAT+TGG 0.284529 4_2:+44794510 Msa0601780:three_prime_UTR
TTGTGGTGAACTTCTCAATT+TGG 0.286072 4_2:+44798691 Msa0601780:three_prime_UTR
TTGACAAAAGAATCTTAAAA+AGG 0.287115 4_2:-44794212 None:intergenic
TCGGTAATGTTAGTATAATA+TGG 0.288240 4_2:+44794268 Msa0601780:three_prime_UTR
TTCTCCTATGGTAACTTGTT+TGG 0.293044 4_2:-44793299 None:intergenic
TCCTATTCCAATACTCGATT+TGG 0.295716 4_2:+44791262 Msa0601780:five_prime_UTR
TATCATTACACCTGGCAATC+TGG 0.300402 4_2:+44794143 Msa0601780:three_prime_UTR
TTGGTAGTGTTTGATGTTGC+TGG 0.303819 4_2:+44793725 Msa0601780:three_prime_UTR
GATGGATCACATGTGATTAT+AGG 0.306392 4_2:+44793389 Msa0601780:three_prime_UTR
TTTAATGGGTAATAACAATA+AGG 0.309516 4_2:-44793599 None:intergenic
CGATTCTTGGTCCTCATAAC+TGG 0.311265 4_2:+44794545 Msa0601780:three_prime_UTR
TTAACCATTTGATCAAATAA+AGG 0.311690 4_2:-44793839 None:intergenic
CAAATATACCTTTCTCCTTT+CGG 0.312510 4_2:+44793330 Msa0601780:three_prime_UTR
CAATTATATGACGAGCTTTA+GGG 0.317659 4_2:-44797679 None:intergenic
GTATGAGTAGTTTAAGAGTT+TGG 0.320271 4_2:+44798593 Msa0601780:three_prime_UTR
TCTAAGCAAAGTTGGGAAAC+TGG 0.328148 4_2:+44798325 Msa0601780:three_prime_UTR
GATGATGTTGGATGGGGACT+GGG 0.339635 4_2:-44793492 None:intergenic
AAGTACGTACCTCCATCTTT+TGG 0.348298 4_2:-44797730 None:intergenic
TGAAAGAATCAAAGTTTAAG+AGG 0.352776 4_2:+44791592 Msa0601780:CDS
ACAGTTATTGTAATTGTAAT+CGG 0.356158 4_2:+44794357 Msa0601780:three_prime_UTR
TAGATTTGAGTGTTTGAGTT+TGG 0.360810 4_2:+44793663 Msa0601780:three_prime_UTR
GGTGTCAAGAAATATTGATT+TGG 0.365193 4_2:+44793029 Msa0601780:intron
CAACATCACATTCAATTTCT+GGG 0.367419 4_2:+44793556 Msa0601780:three_prime_UTR
TTGATATATCTTATCAAATT+GGG 0.367482 4_2:+44798755 Msa0601780:three_prime_UTR
GTTCAACCACGGTCGATTCT+TGG 0.369950 4_2:+44794532 Msa0601780:three_prime_UTR
TTTATGATGTTTGGATTTGA+AGG 0.374560 4_2:+44793270 Msa0601780:exon
AGGAGGCAGCATTGGTTTGA+TGG 0.380464 4_2:+44793059 Msa0601780:CDS
AGCACGAATCATTCACAAAA+AGG 0.381965 4_2:+44794810 Msa0601780:three_prime_UTR
GTAGTTTAAGAGTTTGGTAC+TGG 0.382374 4_2:+44798599 Msa0601780:three_prime_UTR
CAGCATTGGTTTGATGGGGT+TGG 0.384600 4_2:+44793065 Msa0601780:CDS
TTCCACATTTCTCTATATAT+AGG 0.385472 4_2:+44791502 Msa0601780:five_prime_UTR
CGGTAATGTTAGTATAATAT+GGG 0.386541 4_2:+44794269 Msa0601780:three_prime_UTR
GGAGGCAGCATTGGTTTGAT+GGG 0.391809 4_2:+44793060 Msa0601780:CDS
ACCTTCATTCTAGGTGTTTG+AGG 0.396409 4_2:-44793523 None:intergenic
ATCATTACACCTGGCAATCT+GGG 0.398816 4_2:+44794144 Msa0601780:three_prime_UTR
TGGGAAGGAGAGAAGGTTGC+TGG 0.413845 4_2:+44793745 Msa0601780:three_prime_UTR
TGATGATGTTGGATGGGGAC+TGG 0.417898 4_2:-44793493 None:intergenic
GTTTCTCAAGCTGTTTATGA+TGG 0.421989 4_2:+44793087 Msa0601780:CDS
TATATGCATGAAGGTGGGTA+TGG 0.422597 4_2:+44797417 Msa0601780:intron
TCCCTCGTGTACAATTTGTA+AGG 0.429960 4_2:+44791444 Msa0601780:five_prime_UTR
CATCATAAAATTACCTCTCT+TGG 0.431675 4_2:-44793256 None:intergenic
TATATTTGTGTGATTCATGT+AGG 0.435760 4_2:+44794038 Msa0601780:three_prime_UTR
TCTCTTGGCATCAGTGTCCT+TGG 0.437369 4_2:-44793241 None:intergenic
GTGTCCTTTATTTGATCAAA+TGG 0.437804 4_2:+44793835 Msa0601780:three_prime_UTR
AAGGTTGCTGGGAGGAGAGA+AGG 0.437912 4_2:+44793757 Msa0601780:three_prime_UTR
GAGAGAAGGTTGGTGGAAGA+TGG 0.438960 4_2:+44793771 Msa0601780:three_prime_UTR
CATTGAGAAAGTAACATAGT+TGG 0.449765 4_2:+44794310 Msa0601780:three_prime_UTR
CAGAAGTGCCCCAGATTGCC+AGG 0.451322 4_2:-44794153 None:intergenic
AAAGATGCTGCTATTGAACT+TGG 0.452750 4_2:+44791660 Msa0601780:CDS
GTTTATGGAGGAGGCAGCAT+TGG 0.458836 4_2:+44793051 Msa0601780:CDS
GATGCAACTCTTTCATGTTG+TGG 0.462188 4_2:-44798304 None:intergenic
GAGGTTGATGATGATGATGT+TGG 0.463476 4_2:-44793504 None:intergenic
TGCAAACAAATTGTGAAGGT+TGG 0.463982 4_2:+44791530 Msa0601780:five_prime_UTR
TATTATTGTGATAGTGAGGT+TGG 0.466599 4_2:+44793706 Msa0601780:three_prime_UTR
TATTGCTCATCATGTAATCA+TGG 0.471235 4_2:+44791479 Msa0601780:five_prime_UTR
CACATCAAGTATTTAAAACA+TGG 0.472298 4_2:+44794692 Msa0601780:three_prime_UTR
CTAAGCAAAGTTGGGAAACT+GGG 0.478869 4_2:+44798326 Msa0601780:three_prime_UTR
GTAAAGATGATTGTGTGGTT+TGG 0.481171 4_2:-44791290 None:intergenic
GTGGGATTGTTGAATGTAGA+TGG 0.481596 4_2:+44797599 Msa0601780:three_prime_UTR
AGCTTCTTGAGGTCATAACT+TGG 0.481664 4_2:+44797451 Msa0601780:three_prime_UTR
TGGTAGTGTTTGATGTTGCT+GGG 0.482537 4_2:+44793726 Msa0601780:three_prime_UTR
GGAACCTTACTGGTTTATCA+TGG 0.482549 4_2:-44797488 None:intergenic
GATGGAGGTCGACATGTGAT+TGG 0.485208 4_2:+44793105 Msa0601780:CDS
ATTGATTTGGTTTATGGAGG+AGG 0.486097 4_2:+44793042 Msa0601780:CDS
AGATTGCCAGGTGTAATGAT+AGG 0.493613 4_2:-44794141 None:intergenic
CTGGGAGGAGAGAAGGTTGG+TGG 0.493952 4_2:+44793764 Msa0601780:three_prime_UTR
AAGTTGGGAAACTGGGAAGC+TGG 0.495777 4_2:+44798333 Msa0601780:three_prime_UTR
AGTTGCATCTAAGCAAAGTT+GGG 0.497061 4_2:+44798318 Msa0601780:three_prime_UTR
GGTCTCACCAAATCGAGTAT+TGG 0.497653 4_2:-44791269 None:intergenic
AATAAAAGCATCAGAATGCT+TGG 0.500098 4_2:-44794959 None:intergenic
GGAGAAGTGAAGGCAGTAGC+AGG 0.500561 4_2:+44794910 Msa0601780:three_prime_UTR
AGTGGGTTTGTGCAGATCAC+TGG 0.500630 4_2:+44794877 Msa0601780:three_prime_UTR
TGGGGACTGGGGAGCAACGA+GGG 0.502337 4_2:-44793480 None:intergenic
TGTAATTCTATCCAGTTATG+AGG 0.502421 4_2:-44794556 None:intergenic
TAGTTTAAGAGTTTGGTACT+GGG 0.505412 4_2:+44798600 Msa0601780:three_prime_UTR
GAGAAGAAAGAGAAGTGCTA+TGG 0.505420 4_2:-44793456 None:intergenic
TAATCACATGTGATCCATCA+TGG 0.505451 4_2:-44793385 None:intergenic
GTCATAACTTGGGCTCAACT+TGG 0.508031 4_2:+44797462 Msa0601780:three_prime_UTR
CCTTTCGGTGACATTTCACA+TGG 0.509002 4_2:+44793345 Msa0601780:three_prime_UTR
AATATTGATTTGGTTTATGG+AGG 0.510397 4_2:+44793039 Msa0601780:CDS
ACCAAATCGAGTATTGGAAT+AGG 0.511273 4_2:-44791263 None:intergenic
AGTTTAAGAGTTTGGTACTG+GGG 0.511599 4_2:+44798601 Msa0601780:three_prime_UTR
GTTTAAGAGTTTGGTACTGG+GGG 0.514645 4_2:+44798602 Msa0601780:three_prime_UTR
AAAAGAGCTTGTCCAAAAGA+TGG 0.518338 4_2:+44797718 Msa0601780:three_prime_UTR
GAATGGGAACCAACCTGGTA+AGG 0.519861 4_2:-44794983 None:intergenic
GAGTTGCATCTAAGCAAAGT+TGG 0.520245 4_2:+44798317 Msa0601780:three_prime_UTR
CGAAGGAGACTAGTATTGAT+CGG 0.521839 4_2:+44794466 Msa0601780:three_prime_UTR
ACCTCAAACACCTAGAATGA+AGG 0.525261 4_2:+44793522 Msa0601780:three_prime_UTR
CATATTGTGGTAGAAAGATA+AGG 0.525542 4_2:-44793914 None:intergenic
ATGGGGACTGGGGAGCAACG+AGG 0.526736 4_2:-44793481 None:intergenic
GCTTCAGAAGTGGGCTCAAG+TGG 0.526881 4_2:-44794758 None:intergenic
AGTGTTTGATGTTGCTGGGA+AGG 0.530734 4_2:+44793730 Msa0601780:three_prime_UTR
CAAGTGGAAATCGTATAACT+TGG 0.532058 4_2:-44794742 None:intergenic
TATGCAGAGCTTTGAGAGAG+AGG 0.535274 4_2:-44794188 None:intergenic
CATTTATTATTGTGATAGTG+AGG 0.536270 4_2:+44793702 Msa0601780:three_prime_UTR
GAGGCAGCATTGGTTTGATG+GGG 0.537940 4_2:+44793061 Msa0601780:CDS
ATTGACAAAGCTGTGGAGGA+AGG 0.543403 4_2:+44797647 Msa0601780:three_prime_UTR
AGAGACAGTGGGAGAAGTGA+AGG 0.543939 4_2:+44794900 Msa0601780:three_prime_UTR
AAATGTCACCGAAAGGAGAA+AGG 0.548432 4_2:-44793338 None:intergenic
AGGTGAAAATCTTCCCATGA+TGG 0.549943 4_2:+44793371 Msa0601780:three_prime_UTR
TTGCTGGGAGGAGAGAAGGT+TGG 0.550727 4_2:+44793761 Msa0601780:three_prime_UTR
TCTCAAGCTGTTTATGATGG+AGG 0.551173 4_2:+44793090 Msa0601780:CDS
CTGAAATAAAGAGATGGAGG+AGG 0.552271 4_2:+44791560 Msa0601780:exon
GGGAAGGAGAGAAGGTTGCT+GGG 0.553436 4_2:+44793746 Msa0601780:three_prime_UTR
ATGCAGAGCTTTGAGAGAGA+GGG 0.554863 4_2:-44794187 None:intergenic
TTATAGCTACTCTTGTTACC+AGG 0.556974 4_2:-44791639 None:intergenic
ATATGCATGAAGGTGGGTAT+GGG 0.557618 4_2:+44797418 Msa0601780:intron
ATGTTGCTGGGAAGGAGAGA+AGG 0.557689 4_2:+44793738 Msa0601780:three_prime_UTR
GCATCAAAGAAAAGCTGAGA+TGG 0.557994 4_2:+44794936 Msa0601780:three_prime_UTR
GACACTTGAGGAGCTTCTTG+AGG 0.558323 4_2:+44797440 Msa0601780:three_prime_UTR
GAAAGAGAAGTGCTATGGTG+TGG 0.558449 4_2:-44793451 None:intergenic
TATTGAACTTGGAAATGAGT+TGG 0.558813 4_2:+44791671 Msa0601780:CDS
GATCTGAAATAAAGAGATGG+AGG 0.562174 4_2:+44791557 Msa0601780:exon
ATGGAGGTCGACATGTGATT+GGG 0.564949 4_2:+44793106 Msa0601780:CDS
CCACACAATCATCTTTACAT+AGG 0.565050 4_2:+44791295 Msa0601780:five_prime_UTR
AAAGAGAAGTGCTATGGTGT+GGG 0.565117 4_2:-44793450 None:intergenic
ATCTTTCATTGACAAAGCTG+TGG 0.565707 4_2:+44797640 Msa0601780:three_prime_UTR
GGTGACATTTCACATGGGAA+AGG 0.566376 4_2:+44793351 Msa0601780:three_prime_UTR
CTCCTTACAAATTGTACACG+AGG 0.568592 4_2:-44791446 None:intergenic
GGTGAACTTCTCAATTTGGA+TGG 0.569434 4_2:+44798695 Msa0601780:three_prime_UTR
TGATGATGATGATGTTGGAT+GGG 0.569944 4_2:-44793499 None:intergenic
TTGATGATGATGATGTTGGA+TGG 0.570856 4_2:-44793500 None:intergenic
AAGGAGAGAAGGTTGCTGGG+AGG 0.573782 4_2:+44793749 Msa0601780:three_prime_UTR
AATGATGAGGGCTTCAGAAG+TGG 0.574409 4_2:-44794768 None:intergenic
CATTGTGACATCTCAAGTTG+TGG 0.575431 4_2:+44798367 Msa0601780:three_prime_UTR
GCTTCTTGAGGTCATAACTT+GGG 0.575878 4_2:+44797452 Msa0601780:three_prime_UTR
ATTGATCTGAAATAAAGAGA+TGG 0.576817 4_2:+44791554 Msa0601780:exon
ATGATGTTGGATGGGGACTG+GGG 0.581167 4_2:-44793491 None:intergenic
TGTGAATGATTCGTGCTGCA+TGG 0.583628 4_2:-44794804 None:intergenic
AACTTACCTATCATTACACC+TGG 0.586989 4_2:+44794135 Msa0601780:three_prime_UTR
ATGATGAGGGCTTCAGAAGT+GGG 0.587306 4_2:-44794767 None:intergenic
TTTCATTGACAAAGCTGTGG+AGG 0.587801 4_2:+44797643 Msa0601780:three_prime_UTR
ACATCAAGTATTTAAAACAT+GGG 0.596693 4_2:+44794693 Msa0601780:three_prime_UTR
TAAGAAAGAATTATAGCTTG+AGG 0.597491 4_2:-44798441 None:intergenic
AATCACATGTGATCCATCAT+GGG 0.597892 4_2:-44793384 None:intergenic
AGCAAAATAAGCACATATTG+TGG 0.597910 4_2:-44793927 None:intergenic
TCATCTTTACATAGGACCAC+GGG 0.606037 4_2:+44791303 Msa0601780:five_prime_UTR
CAGATCACTGGAGAGACAGT+GGG 0.608222 4_2:+44794889 Msa0601780:three_prime_UTR
ATGACCAAACAAGTTACCAT+AGG 0.608488 4_2:+44793295 Msa0601780:three_prime_UTR
GATGATGATGATGTTGGATG+GGG 0.609154 4_2:-44793498 None:intergenic
ATTCATGTAGGTTTACAAGT+GGG 0.616136 4_2:+44794050 Msa0601780:three_prime_UTR
ATCATCTTTACATAGGACCA+CGG 0.620297 4_2:+44791302 Msa0601780:five_prime_UTR
CACCTATATATAGAGAAATG+TGG 0.620764 4_2:-44791504 None:intergenic
GTGAACTTCTCAATTTGGAT+GGG 0.626642 4_2:+44798696 Msa0601780:three_prime_UTR
ACTTGAGATGTCACAATGTG+AGG 0.626989 4_2:-44798362 None:intergenic
AAACAAATTGAATCATGACT+AGG 0.629784 4_2:+44794649 Msa0601780:three_prime_UTR
GATTCATGTAGGTTTACAAG+TGG 0.631913 4_2:+44794049 Msa0601780:three_prime_UTR
GCAGATCACTGGAGAGACAG+TGG 0.632705 4_2:+44794888 Msa0601780:three_prime_UTR
CCATGTGAAATGTCACCGAA+AGG 0.633254 4_2:-44793345 None:intergenic
AAAGTCTTTGTCATCAATTG+TGG 0.643936 4_2:+44798674 Msa0601780:three_prime_UTR
CTTTCGGTGACATTTCACAT+GGG 0.644994 4_2:+44793346 Msa0601780:three_prime_UTR
AAGGACACTGATGCCAAGAG+AGG 0.647568 4_2:+44793243 Msa0601780:CDS
AGGTGGGTATGGGACACTTG+AGG 0.655697 4_2:+44797428 Msa0601780:intron
GGTAATGTTAGTATAATATG+GGG 0.656182 4_2:+44794270 Msa0601780:three_prime_UTR
TCATTACACCTGGCAATCTG+GGG 0.661474 4_2:+44794145 Msa0601780:three_prime_UTR
ATATTTGGATAACAAAAGCA+AGG 0.664631 4_2:-44793994 None:intergenic
GTTGTGCAAACAAATTGTGA+AGG 0.665875 4_2:+44791526 Msa0601780:five_prime_UTR
CCTATGTAAAGATGATTGTG+TGG 0.666612 4_2:-44791295 None:intergenic
AGAGCTTGTCCAAAAGATGG+AGG 0.667572 4_2:+44797721 Msa0601780:three_prime_UTR
ATATATAATTGGTTCAACCA+CGG 0.679664 4_2:+44794521 Msa0601780:three_prime_UTR
TCCTTACAAATTGTACACGA+GGG 0.683887 4_2:-44791445 None:intergenic
TTTGGATAACAAAAGCAAGG+TGG 0.697364 4_2:-44793991 None:intergenic
GATGTGAGGTACTACAAGTG+AGG 0.698514 4_2:-44794675 None:intergenic
TGAGGACCAAGAATCGACCG+TGG 0.771692 4_2:-44794538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTAATT+CGG + chr4_2:44794249-44794268 Msa0601780:three_prime_UTR 0.0%
!! AAGAAAATAATATGTAAAAA+AGG - chr4_2:44791332-44791351 None:intergenic 10.0%
!!! TTGTTTTATAACTATATTAT+TGG + chr4_2:44792698-44792717 Msa0601780:intron 10.0%
!! AATTAAAAATAAAAACAATG+AGG - chr4_2:44794588-44794607 None:intergenic 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG + chr4_2:44795385-44795404 Msa0601780:intron 10.0%
!!! ATCTTTTATTTTTAAATTGT+TGG + chr4_2:44795747-44795766 Msa0601780:intron 10.0%
!!! ATATTTAGACATATTATTTT+TGG + chr4_2:44796017-44796036 Msa0601780:intron 10.0%
!!! AAAAAAAATTACTACAATTT+TGG + chr4_2:44796327-44796346 Msa0601780:intron 10.0%
!!! AAAATATTTTAACGTATTTT+TGG - chr4_2:44796721-44796740 None:intergenic 10.0%
!!! AAAAATACGTTAAAATATTT+TGG + chr4_2:44796720-44796739 Msa0601780:intron 10.0%
!! CCAAAAAATAATTATTTAAA+TGG - chr4_2:44796973-44796992 None:intergenic 10.0%
!!! CCATTTAAATAATTATTTTT+TGG + chr4_2:44796970-44796989 Msa0601780:intron 10.0%
!!! ATTATATAATTATTTTTGAG+AGG + chr4_2:44797007-44797026 Msa0601780:intron 10.0%
!! AAAAAAACATAAAAAAGTTA+AGG + chr4_2:44797271-44797290 Msa0601780:intron 10.0%
!!! GTTTAACTTTTTAATAAAAA+TGG - chr4_2:44797527-44797546 None:intergenic 10.0%
!! AAAATTCAATTTATAGATTA+TGG - chr4_2:44797566-44797585 None:intergenic 10.0%
!!! ATAATCTATAAATTGAATTT+TGG + chr4_2:44797565-44797584 Msa0601780:intron 10.0%
!!! TTAAAAATGTTTTCAATATA+TGG + chr4_2:44797950-44797969 Msa0601780:intron 10.0%
!!! TTTTTACAAGCAATTTTTTA+GGG - chr4_2:44792947-44792966 None:intergenic 15.0%
!!! TGTTAATTAAATCCTTTTTT+GGG + chr4_2:44792984-44793003 Msa0601780:intron 15.0%
!! AATAATTACATTTCACTTAA+AGG - chr4_2:44793634-44793653 None:intergenic 15.0%
!!! TTACAATAACTGTATTATTT+TGG - chr4_2:44794350-44794369 None:intergenic 15.0%
!!! TTTTTGAATTTCTTTTTCTT+TGG + chr4_2:44794430-44794449 Msa0601780:three_prime_UTR 15.0%
!! CAAAACAATCTATATATAAT+TGG + chr4_2:44794510-44794529 Msa0601780:three_prime_UTR 15.0%
!!! TTGTAATTTGTGTAATAATT+TGG + chr4_2:44794836-44794855 Msa0601780:three_prime_UTR 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr4_2:44795362-44795381 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr4_2:44795361-44795380 Msa0601780:intron 15.0%
!! ATTCTCTACTAAAAAAATTA+TGG - chr4_2:44795596-44795615 None:intergenic 15.0%
!!! AAAGAATTTTGATTTACATT+GGG - chr4_2:44796084-44796103 None:intergenic 15.0%
!! ATTCAAACTAATAAAACAAA+CGG - chr4_2:44796383-44796402 None:intergenic 15.0%
!!! AAATTTTTGCTTATAATAAC+CGG - chr4_2:44796464-44796483 None:intergenic 15.0%
!! AACTTAAAAATACAAATCAA+CGG + chr4_2:44797097-44797116 Msa0601780:intron 15.0%
!!! TATAAATTGAATTTTGGTTT+TGG + chr4_2:44797571-44797590 Msa0601780:intron 15.0%
!! TAACAAAAAAAAAAAAATGC+TGG - chr4_2:44798471-44798490 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGTTAGTG+TGG + chr4_2:44798474-44798493 Msa0601780:three_prime_UTR 15.0%
!!! ATGTATCTTTTTCTTTTTAA+AGG + chr4_2:44798727-44798746 Msa0601780:three_prime_UTR 15.0%
!! TTGATATATCTTATCAAATT+GGG + chr4_2:44798755-44798774 Msa0601780:three_prime_UTR 15.0%
!!! GTTTGTTTTCTACTTTAATA+TGG - chr4_2:44791388-44791407 None:intergenic 20.0%
!!! TAACATTTAATGTTTTGCTT+TGG + chr4_2:44791919-44791938 Msa0601780:intron 20.0%
!! CTAATTTGACTAAGTATAAA+AGG - chr4_2:44792218-44792237 None:intergenic 20.0%
!!! AAATGGTTTGTATATATAGA+GGG - chr4_2:44792289-44792308 None:intergenic 20.0%
!!! TAAATGGTTTGTATATATAG+AGG - chr4_2:44792290-44792309 None:intergenic 20.0%
!!! AATCTTCAACACTTTTTTTT+TGG - chr4_2:44792367-44792386 None:intergenic 20.0%
!! ATGAAAAAAATGTATTTGAG+AGG - chr4_2:44792800-44792819 None:intergenic 20.0%
!!! TCATTTTGTAGACATTAAAT+TGG - chr4_2:44792879-44792898 None:intergenic 20.0%
!!! CTTTTTACAAGCAATTTTTT+AGG - chr4_2:44792948-44792967 None:intergenic 20.0%
!!! GTGTTAATTAAATCCTTTTT+TGG + chr4_2:44792983-44793002 Msa0601780:intron 20.0%
!!! ATTGTTTTGATATCTTCAAA+AGG + chr4_2:44793008-44793027 Msa0601780:intron 20.0%
!!! AGAAATATTGATTTGGTTTA+TGG + chr4_2:44793036-44793055 Msa0601780:CDS 20.0%
!!! TTTGATAATTTTTTCTCCTA+TGG - chr4_2:44793314-44793333 None:intergenic 20.0%
!!! TTTAATGGGTAATAACAATA+AGG - chr4_2:44793602-44793621 None:intergenic 20.0%
!! TTATTACCCATTAAAAAACT+TGG + chr4_2:44793607-44793626 Msa0601780:three_prime_UTR 20.0%
!! TTAACCATTTGATCAAATAA+AGG - chr4_2:44793842-44793861 None:intergenic 20.0%
!! AAAAAGATGATACATAGAAT+TGG - chr4_2:44793962-44793981 None:intergenic 20.0%
!!! TTTATTTTGATGTCACATTT+TGG + chr4_2:44794100-44794119 Msa0601780:three_prime_UTR 20.0%
!! TTGACAAAAGAATCTTAAAA+AGG - chr4_2:44794215-44794234 None:intergenic 20.0%
!! ACAGTTATTGTAATTGTAAT+CGG + chr4_2:44794357-44794376 Msa0601780:three_prime_UTR 20.0%
!!! ACATCAAGTATTTAAAACAT+GGG + chr4_2:44794693-44794712 Msa0601780:three_prime_UTR 20.0%
!! CATTCAATAAATGATGTATA+TGG + chr4_2:44795093-44795112 Msa0601780:intron 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG - chr4_2:44795157-44795176 None:intergenic 20.0%
!! TGTGAATTAGTAGAAAAATA+TGG - chr4_2:44795237-44795256 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr4_2:44795328-44795347 Msa0601780:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr4_2:44795371-44795390 None:intergenic 20.0%
!!! TAAAAGTAATATTTTGGAAG+TGG + chr4_2:44795391-44795410 Msa0601780:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr4_2:44795448-44795467 Msa0601780:intron 20.0%
!!! TTTTTGGTATGTTTTTACTT+CGG + chr4_2:44796033-44796052 Msa0601780:intron 20.0%
!!! GAAAGAATTTTGATTTACAT+TGG - chr4_2:44796136-44796155 None:intergenic 20.0%
!!! AATATTGGGTTGTTTTTTTA+AGG - chr4_2:44796801-44796820 None:intergenic 20.0%
!! AGTTATTCAAAATTTGATGT+CGG + chr4_2:44796922-44796941 Msa0601780:intron 20.0%
!!! TAAGTTTTTAGTTGTATATG+TGG - chr4_2:44797083-44797102 None:intergenic 20.0%
!! ACTTAAAAATACAAATCAAC+GGG + chr4_2:44797098-44797117 Msa0601780:intron 20.0%
!!! AAATTATTTCAAGTTCTCAA+CGG + chr4_2:44797210-44797229 Msa0601780:intron 20.0%
!! TAAAAATCGTAGCATTAAAA+TGG - chr4_2:44797828-44797847 None:intergenic 20.0%
!!! TTTTAGCTTATGAATATTCA+TGG + chr4_2:44797843-44797862 Msa0601780:intron 20.0%
!!! ATGTGAATTATTGTTTTTTC+AGG + chr4_2:44798518-44798537 Msa0601780:three_prime_UTR 20.0%
!! GTTGATATATCTTATCAAAT+TGG + chr4_2:44798754-44798773 Msa0601780:three_prime_UTR 20.0%
! TTCCACATTTCTCTATATAT+AGG + chr4_2:44791502-44791521 Msa0601780:five_prime_UTR 25.0%
!! ATTGATCTGAAATAAAGAGA+TGG + chr4_2:44791554-44791573 Msa0601780:exon 25.0%
! TGAAAGAATCAAAGTTTAAG+AGG + chr4_2:44791592-44791611 Msa0601780:CDS 25.0%
!! TATTACAAGCAGATTTTGTA+GGG - chr4_2:44791775-44791794 None:intergenic 25.0%
! TGTTAAATTTCCAAGAAGAA+TGG - chr4_2:44791904-44791923 None:intergenic 25.0%
! GATTTGATTAAACCTTTGTT+TGG + chr4_2:44792000-44792019 Msa0601780:intron 25.0%
!! AATTTTCATTACGAACCTTT+TGG + chr4_2:44792108-44792127 Msa0601780:intron 25.0%
!!! CACATACTTTCTTTGTTTTT+GGG - chr4_2:44792453-44792472 None:intergenic 25.0%
!! TGTACATGAGATTTTACTTA+AGG + chr4_2:44792830-44792849 Msa0601780:intron 25.0%
!! GTACATGAGATTTTACTTAA+GGG + chr4_2:44792831-44792850 Msa0601780:intron 25.0%
! ATCAAAACAATACCCAAAAA+AGG - chr4_2:44792999-44793018 None:intergenic 25.0%
!!! AATATTGATTTGGTTTATGG+AGG + chr4_2:44793039-44793058 Msa0601780:CDS 25.0%
!! TTCTTCATTATGATTTGTCT+TGG + chr4_2:44793144-44793163 Msa0601780:intron 25.0%
!!! TATTGTCATTGTATTTTTGC+AGG + chr4_2:44793212-44793231 Msa0601780:intron 25.0%
!!! ATTGTCATTGTATTTTTGCA+GGG + chr4_2:44793213-44793232 Msa0601780:intron 25.0%
!! AGAGGTAATTTTATGATGTT+TGG + chr4_2:44793261-44793280 Msa0601780:exon 25.0%
! TTTATGATGTTTGGATTTGA+AGG + chr4_2:44793270-44793289 Msa0601780:exon 25.0%
!! TGATTATAGGTTAGATTTTG+AGG + chr4_2:44793402-44793421 Msa0601780:three_prime_UTR 25.0%
!!! AAAGGTCCAAGTTTTTTAAT+GGG - chr4_2:44793616-44793635 None:intergenic 25.0%
!!! TAAAGGTCCAAGTTTTTTAA+TGG - chr4_2:44793617-44793636 None:intergenic 25.0%
!! CATTTATTATTGTGATAGTG+AGG + chr4_2:44793702-44793721 Msa0601780:three_prime_UTR 25.0%
! ATATTTGGATAACAAAAGCA+AGG - chr4_2:44793997-44794016 None:intergenic 25.0%
! GAGTGGAAAATCAATATATT+TGG - chr4_2:44794012-44794031 None:intergenic 25.0%
! ACACAAATATAAAAAGAGAG+TGG - chr4_2:44794029-44794048 None:intergenic 25.0%
! TATATTTGTGTGATTCATGT+AGG + chr4_2:44794038-44794057 Msa0601780:three_prime_UTR 25.0%
! TCGGTAATGTTAGTATAATA+TGG + chr4_2:44794268-44794287 Msa0601780:three_prime_UTR 25.0%
! CGGTAATGTTAGTATAATAT+GGG + chr4_2:44794269-44794288 Msa0601780:three_prime_UTR 25.0%
! GGTAATGTTAGTATAATATG+GGG + chr4_2:44794270-44794289 Msa0601780:three_prime_UTR 25.0%
!! ATATATAATTGGTTCAACCA+CGG + chr4_2:44794521-44794540 Msa0601780:three_prime_UTR 25.0%
! AAACAAATTGAATCATGACT+AGG + chr4_2:44794649-44794668 Msa0601780:three_prime_UTR 25.0%
!!! TGTTTTAAATACTTGATGTG+AGG - chr4_2:44794692-44794711 None:intergenic 25.0%
!! CACATCAAGTATTTAAAACA+TGG + chr4_2:44794692-44794711 Msa0601780:three_prime_UTR 25.0%
!!! ATAACTTGGCATTTTTTCAA+AGG - chr4_2:44794731-44794750 None:intergenic 25.0%
! TGCAAAAATAGTAATGATGA+GGG - chr4_2:44794783-44794802 None:intergenic 25.0%
! ATGCAAAAATAGTAATGATG+AGG - chr4_2:44794784-44794803 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr4_2:44795132-44795151 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr4_2:44795167-44795186 Msa0601780:intron 25.0%
! ATTTACGTTAGAAAGAACTT+AGG - chr4_2:44795856-44795875 None:intergenic 25.0%
!! TTTTGGCAAAAAATTACCAA+AGG + chr4_2:44796344-44796363 Msa0601780:intron 25.0%
! AAAAAATTACCAAAGGTTTG+AGG + chr4_2:44796351-44796370 Msa0601780:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr4_2:44796536-44796555 None:intergenic 25.0%
!!! TATTTTTGGTGATTTTCATG+GGG - chr4_2:44796707-44796726 None:intergenic 25.0%
!!! GTATTTTTGGTGATTTTCAT+GGG - chr4_2:44796708-44796727 None:intergenic 25.0%
! TCTTCCACATCATAAATATT+GGG - chr4_2:44796815-44796834 None:intergenic 25.0%
! ATCTTCCACATCATAAATAT+TGG - chr4_2:44796816-44796835 None:intergenic 25.0%
!!! TTTTTAGTTGTATATGTGGA+TGG - chr4_2:44797079-44797098 None:intergenic 25.0%
! AATAAAAATGGCAAGATTGA+GGG - chr4_2:44797515-44797534 None:intergenic 25.0%
! TAATAAAAATGGCAAGATTG+AGG - chr4_2:44797516-44797535 None:intergenic 25.0%
!!! TTGAATTTTGGTTTTGGAAA+AGG + chr4_2:44797577-44797596 Msa0601780:intron 25.0%
! GATTTGATATCTCTCAAATA+TGG + chr4_2:44797926-44797945 Msa0601780:intron 25.0%
! TTTGGCATAAACTATACATA+GGG - chr4_2:44798093-44798112 None:intergenic 25.0%
!! TTTTGGCATAAACTATACAT+AGG - chr4_2:44798094-44798113 None:intergenic 25.0%
!! ACGATGAATTATCACAATTT+TGG - chr4_2:44798111-44798130 None:intergenic 25.0%
!!! AGATTTGATTTTACCCTTAT+AGG + chr4_2:44798273-44798292 Msa0601780:intron 25.0%
! TAAGAAAGAATTATAGCTTG+AGG - chr4_2:44798444-44798463 None:intergenic 25.0%
!!! CTAACATCTATTCAGTTTTT+TGG - chr4_2:44798561-44798580 None:intergenic 25.0%
! AAAAACTGAATAGATGTTAG+AGG + chr4_2:44798561-44798580 Msa0601780:three_prime_UTR 25.0%
! CTTTCTCTCTTATCTTTTTC+TGG + chr4_2:44791349-44791368 Msa0601780:five_prime_UTR 30.0%
!! TATCTTTTTCTGGTACAATC+AGG + chr4_2:44791359-44791378 Msa0601780:five_prime_UTR 30.0%
!! ATCTTTTTCTGGTACAATCA+GGG + chr4_2:44791360-44791379 Msa0601780:five_prime_UTR 30.0%
TATTGCTCATCATGTAATCA+TGG + chr4_2:44791479-44791498 Msa0601780:five_prime_UTR 30.0%
CACCTATATATAGAGAAATG+TGG - chr4_2:44791507-44791526 None:intergenic 30.0%
!!! AAGAGGATTTGTGTTTTTTG+TGG + chr4_2:44791609-44791628 Msa0601780:CDS 30.0%
TATTGAACTTGGAAATGAGT+TGG + chr4_2:44791671-44791690 Msa0601780:CDS 30.0%
! TTTTCCCTTAGAATTTAGAC+CGG + chr4_2:44791738-44791757 Msa0601780:intron 30.0%
! CTATTACAAGCAGATTTTGT+AGG - chr4_2:44791776-44791795 None:intergenic 30.0%
CAAAATCTGCTTGTAATAGA+AGG + chr4_2:44791777-44791796 Msa0601780:intron 30.0%
CATCTTATGTAAGACTCTTT+AGG + chr4_2:44791842-44791861 Msa0601780:intron 30.0%
AAATTTCCAAGAAGAATGGA+GGG - chr4_2:44791900-44791919 None:intergenic 30.0%
TAAATTTCCAAGAAGAATGG+AGG - chr4_2:44791901-44791920 None:intergenic 30.0%
!!! AATGTTTTGCTTTGGTGTTT+TGG + chr4_2:44791927-44791946 Msa0601780:intron 30.0%
AGTAGTTCAATTACGAATGA+AGG - chr4_2:44792061-44792080 None:intergenic 30.0%
TGAACTACTTAATCTCATCA+AGG + chr4_2:44792072-44792091 Msa0601780:intron 30.0%
!!! CAGTTTCTCAACTTTTTTCA+TGG + chr4_2:44792262-44792281 Msa0601780:intron 30.0%
GTGAAGTTGTGAAAGATAAA+TGG - chr4_2:44792306-44792325 None:intergenic 30.0%
ACTTCACATAGATAAAGTTG+TGG + chr4_2:44792319-44792338 Msa0601780:intron 30.0%
!!! CCACATACTTTCTTTGTTTT+TGG - chr4_2:44792454-44792473 None:intergenic 30.0%
! CCAAAAACAAAGAAAGTATG+TGG + chr4_2:44792451-44792470 Msa0601780:intron 30.0%
! GGTGTCAAGAAATATTGATT+TGG + chr4_2:44793029-44793048 Msa0601780:intron 30.0%
! TTCATTATGATTTGTCTTGG+TGG + chr4_2:44793147-44793166 Msa0601780:intron 30.0%
CATCATAAAATTACCTCTCT+TGG - chr4_2:44793259-44793278 None:intergenic 30.0%
CAAATATACCTTTCTCCTTT+CGG + chr4_2:44793330-44793349 Msa0601780:three_prime_UTR 30.0%
TTTGATACAACCTTCATTCT+AGG - chr4_2:44793535-44793554 None:intergenic 30.0%
TCAACATCACATTCAATTTC+TGG + chr4_2:44793555-44793574 Msa0601780:three_prime_UTR 30.0%
CAACATCACATTCAATTTCT+GGG + chr4_2:44793556-44793575 Msa0601780:three_prime_UTR 30.0%
! TAGATTTGAGTGTTTGAGTT+TGG + chr4_2:44793663-44793682 Msa0601780:three_prime_UTR 30.0%
! TATTATTGTGATAGTGAGGT+TGG + chr4_2:44793706-44793725 Msa0601780:three_prime_UTR 30.0%
! GTGTCCTTTATTTGATCAAA+TGG + chr4_2:44793835-44793854 Msa0601780:three_prime_UTR 30.0%
!! TAAAATTGATTTTCCCATCG+TGG + chr4_2:44793859-44793878 Msa0601780:intron 30.0%
GATAAGGTTACATTTCACAT+GGG - chr4_2:44793901-44793920 None:intergenic 30.0%
AGATAAGGTTACATTTCACA+TGG - chr4_2:44793902-44793921 None:intergenic 30.0%
CATATTGTGGTAGAAAGATA+AGG - chr4_2:44793917-44793936 None:intergenic 30.0%
AGCAAAATAAGCACATATTG+TGG - chr4_2:44793930-44793949 None:intergenic 30.0%
ATTCATGTAGGTTTACAAGT+GGG + chr4_2:44794050-44794069 Msa0601780:three_prime_UTR 30.0%
CATTGAGAAAGTAACATAGT+TGG + chr4_2:44794310-44794329 Msa0601780:three_prime_UTR 30.0%
!!! TATTATTTTGGCAGTCAATC+TGG - chr4_2:44794338-44794357 None:intergenic 30.0%
TGTAATTCTATCCAGTTATG+AGG - chr4_2:44794559-44794578 None:intergenic 30.0%
! ATTATTCTTTTGTGTGTGAG+TGG + chr4_2:44794859-44794878 Msa0601780:three_prime_UTR 30.0%
! TTATTCTTTTGTGTGTGAGT+GGG + chr4_2:44794860-44794879 Msa0601780:three_prime_UTR 30.0%
!! AATAAAAGCATCAGAATGCT+TGG - chr4_2:44794962-44794981 None:intergenic 30.0%
TAGTAGAATATTGGTGGAAT+GGG - chr4_2:44795002-44795021 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr4_2:44795279-44795298 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr4_2:44795280-44795299 Msa0601780:intron 30.0%
GTGGTGTGCAAAATATTAAT+TGG + chr4_2:44795410-44795429 Msa0601780:intron 30.0%
!! AAGCGACACTCATTTTAAAA+CGG + chr4_2:44795514-44795533 Msa0601780:intron 30.0%
!! TATAGTTAAAAGTACTCCCT+CGG - chr4_2:44795689-44795708 None:intergenic 30.0%
AAAATAAGCTCGATCCAAAT+GGG - chr4_2:44795785-44795804 None:intergenic 30.0%
TAAAATAAGCTCGATCCAAA+TGG - chr4_2:44795786-44795805 None:intergenic 30.0%
!!! TTTTGATTTACATTGGGCTT+TGG - chr4_2:44796129-44796148 None:intergenic 30.0%
GACATCTAAGTTCACAAATA+AGG + chr4_2:44796179-44796198 Msa0601780:intron 30.0%
! TAATATCCACTTGTTACGTT+CGG - chr4_2:44796416-44796435 None:intergenic 30.0%
! TTTTGCTTATAATAACCGGA+GGG - chr4_2:44796460-44796479 None:intergenic 30.0%
! TTTTTGCTTATAATAACCGG+AGG - chr4_2:44796461-44796480 None:intergenic 30.0%
TTGCTTATAATACTGACCAA+AGG + chr4_2:44796574-44796593 Msa0601780:intron 30.0%
TGCTTATAATACTGACCAAA+GGG + chr4_2:44796575-44796594 Msa0601780:intron 30.0%
!!! CGTATTTTTGGTGATTTTCA+TGG - chr4_2:44796709-44796728 None:intergenic 30.0%
ACAACCCAATATTTATGATG+TGG + chr4_2:44796808-44796827 Msa0601780:intron 30.0%
AAAAATACAAATCAACGGGT+TGG + chr4_2:44797102-44797121 Msa0601780:intron 30.0%
ATCAAGATTTGAATCCACTT+AGG + chr4_2:44797149-44797168 Msa0601780:intron 30.0%
ACATAGATATTTCTCCTAAG+TGG - chr4_2:44797166-44797185 None:intergenic 30.0%
!! ACATATATTCTGAAGCTGTA+AGG + chr4_2:44797345-44797364 Msa0601780:intron 30.0%
TATGTCCATTATATGCATGA+AGG + chr4_2:44797408-44797427 Msa0601780:intron 30.0%
!!! AATTTTGGTTTTGGAAAAGG+TGG + chr4_2:44797580-44797599 Msa0601780:intron 30.0%
!!! ATTTTGGTTTTGGAAAAGGT+GGG + chr4_2:44797581-44797600 Msa0601780:intron 30.0%
CAATTATATGACGAGCTTTA+GGG - chr4_2:44797682-44797701 None:intergenic 30.0%
ACAATTATATGACGAGCTTT+AGG - chr4_2:44797683-44797702 None:intergenic 30.0%
CAAATCATTATTAACCCGTT+TGG - chr4_2:44797912-44797931 None:intergenic 30.0%
!!! CATCCTTCATTTGTTGATTT+TGG + chr4_2:44798023-44798042 Msa0601780:intron 30.0%
TTGCCAAAATCAACAAATGA+AGG - chr4_2:44798029-44798048 None:intergenic 30.0%
GTATGAGTAGTTTAAGAGTT+TGG + chr4_2:44798593-44798612 Msa0601780:three_prime_UTR 30.0%
TAGTTTAAGAGTTTGGTACT+GGG + chr4_2:44798600-44798619 Msa0601780:three_prime_UTR 30.0%
AAAGTCTTTGTCATCAATTG+TGG + chr4_2:44798674-44798693 Msa0601780:three_prime_UTR 30.0%
TCCTATTCCAATACTCGATT+TGG + chr4_2:44791262-44791281 Msa0601780:five_prime_UTR 35.0%
!! ACCAAATCGAGTATTGGAAT+AGG - chr4_2:44791266-44791285 None:intergenic 35.0%
GTAAAGATGATTGTGTGGTT+TGG - chr4_2:44791293-44791312 None:intergenic 35.0%
CCTATGTAAAGATGATTGTG+TGG - chr4_2:44791298-44791317 None:intergenic 35.0%
CCACACAATCATCTTTACAT+AGG + chr4_2:44791295-44791314 Msa0601780:five_prime_UTR 35.0%
ATCATCTTTACATAGGACCA+CGG + chr4_2:44791302-44791321 Msa0601780:five_prime_UTR 35.0%
TATGTAAAAAAGGAAACCCG+TGG - chr4_2:44791322-44791341 None:intergenic 35.0%
!! TCTTTTTCTGGTACAATCAG+GGG + chr4_2:44791361-44791380 Msa0601780:five_prime_UTR 35.0%
TCCTTACAAATTGTACACGA+GGG - chr4_2:44791448-44791467 None:intergenic 35.0%
GTTGTGCAAACAAATTGTGA+AGG + chr4_2:44791526-44791545 Msa0601780:five_prime_UTR 35.0%
TGCAAACAAATTGTGAAGGT+TGG + chr4_2:44791530-44791549 Msa0601780:five_prime_UTR 35.0%
! GATCTGAAATAAAGAGATGG+AGG + chr4_2:44791557-44791576 Msa0601780:exon 35.0%
TTATAGCTACTCTTGTTACC+AGG - chr4_2:44791642-44791661 None:intergenic 35.0%
AAAGATGCTGCTATTGAACT+TGG + chr4_2:44791660-44791679 Msa0601780:CDS 35.0%
TTGTCCGGTCTAAATTCTAA+GGG - chr4_2:44791745-44791764 None:intergenic 35.0%
TTTGTCCGGTCTAAATTCTA+AGG - chr4_2:44791746-44791765 None:intergenic 35.0%
TGGTATCAAGAAACTCATCA+AGG - chr4_2:44792030-44792049 None:intergenic 35.0%
TACGAATGAAGGAATTGATG+TGG - chr4_2:44792050-44792069 None:intergenic 35.0%
! TTTCATTACGAACCTTTTGG+TGG + chr4_2:44792111-44792130 Msa0601780:intron 35.0%
!! ATTGATTTGGTTTATGGAGG+AGG + chr4_2:44793042-44793061 Msa0601780:CDS 35.0%
GTTTCTCAAGCTGTTTATGA+TGG + chr4_2:44793087-44793106 Msa0601780:CDS 35.0%
! ATTTTTGCAGGGTTATTCCA+AGG + chr4_2:44793224-44793243 Msa0601780:intron 35.0%
ATGACCAAACAAGTTACCAT+AGG + chr4_2:44793295-44793314 Msa0601780:three_prime_UTR 35.0%
!! TTCTCCTATGGTAACTTGTT+TGG - chr4_2:44793302-44793321 None:intergenic 35.0%
AATCACATGTGATCCATCAT+GGG - chr4_2:44793387-44793406 None:intergenic 35.0%
TAATCACATGTGATCCATCA+TGG - chr4_2:44793388-44793407 None:intergenic 35.0%
GATGGATCACATGTGATTAT+AGG + chr4_2:44793389-44793408 Msa0601780:three_prime_UTR 35.0%
! TGATGATGATGATGTTGGAT+GGG - chr4_2:44793502-44793521 None:intergenic 35.0%
!! TTGATGATGATGATGTTGGA+TGG - chr4_2:44793503-44793522 None:intergenic 35.0%
GTTACATTTCACATGGGAAA+GGG - chr4_2:44793895-44793914 None:intergenic 35.0%
TTTGGATAACAAAAGCAAGG+TGG - chr4_2:44793994-44794013 None:intergenic 35.0%
GATTCATGTAGGTTTACAAG+TGG + chr4_2:44794049-44794068 Msa0601780:three_prime_UTR 35.0%
AACTTACCTATCATTACACC+TGG + chr4_2:44794135-44794154 Msa0601780:three_prime_UTR 35.0%
TAGTCTCCTTCGAAAAACAT+TGG - chr4_2:44794458-44794477 None:intergenic 35.0%
CAAGTGGAAATCGTATAACT+TGG - chr4_2:44794745-44794764 None:intergenic 35.0%
AGCACGAATCATTCACAAAA+AGG + chr4_2:44794810-44794829 Msa0601780:three_prime_UTR 35.0%
CTAGTAGAATATTGGTGGAA+TGG - chr4_2:44795003-44795022 None:intergenic 35.0%
GTGAGTAGGTCATATATTGA+GGG - chr4_2:44795032-44795051 None:intergenic 35.0%
AGTGAGTAGGTCATATATTG+AGG - chr4_2:44795033-44795052 None:intergenic 35.0%
AATATATGACCTACTCACTC+TGG + chr4_2:44795034-44795053 Msa0601780:intron 35.0%
ATATTATCAACTACTCCCTC+CGG - chr4_2:44795189-44795208 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+GGG + chr4_2:44795518-44795537 Msa0601780:intron 35.0%
ATATGCATTTGTACGTGTGT+CGG + chr4_2:44795637-44795656 Msa0601780:intron 35.0%
TCAACTAGGTCATCTATTGA+GGG + chr4_2:44795662-44795681 Msa0601780:intron 35.0%
TTCGGAATTCTGATGCAATT+TGG + chr4_2:44796051-44796070 Msa0601780:intron 35.0%
TCGGAATTCTGATGCAATTT+GGG + chr4_2:44796052-44796071 Msa0601780:intron 35.0%
TTTCATGGGGTAAATCCAAT+CGG - chr4_2:44796694-44796713 None:intergenic 35.0%
AGTTTCTTGCACGTCTAATT+TGG - chr4_2:44796756-44796775 None:intergenic 35.0%
!! TGGAAGATTAGTCTTGTCTT+GGG + chr4_2:44796828-44796847 Msa0601780:intron 35.0%
AATAATGCTAGACTGCTAGA+GGG - chr4_2:44796874-44796893 None:intergenic 35.0%
!! TATTTCAAGTTCTCAACGGA+TGG + chr4_2:44797214-44797233 Msa0601780:intron 35.0%
TCTCAACGGATGGAAAAAAA+AGG + chr4_2:44797224-44797243 Msa0601780:intron 35.0%
TCCATTATATGCATGAAGGT+GGG + chr4_2:44797412-44797431 Msa0601780:intron 35.0%
ATCTTTCATTGACAAAGCTG+TGG + chr4_2:44797640-44797659 Msa0601780:three_prime_UTR 35.0%
AAAAGAGCTTGTCCAAAAGA+TGG + chr4_2:44797718-44797737 Msa0601780:three_prime_UTR 35.0%
CATTATTAACCCGTTTGGTT+TGG - chr4_2:44797907-44797926 None:intergenic 35.0%
TCTTTCGTGCATGTTTGAAT+AGG - chr4_2:44798151-44798170 None:intergenic 35.0%
!! TGTGGAGAGTATTCCTATAA+GGG - chr4_2:44798289-44798308 None:intergenic 35.0%
!! TTGTGGAGAGTATTCCTATA+AGG - chr4_2:44798290-44798309 None:intergenic 35.0%
AGTTGCATCTAAGCAAAGTT+GGG + chr4_2:44798318-44798337 Msa0601780:three_prime_UTR 35.0%
GTAGTTTAAGAGTTTGGTAC+TGG + chr4_2:44798599-44798618 Msa0601780:three_prime_UTR 35.0%
AGTTTAAGAGTTTGGTACTG+GGG + chr4_2:44798601-44798620 Msa0601780:three_prime_UTR 35.0%
TTGTGGTGAACTTCTCAATT+TGG + chr4_2:44798691-44798710 Msa0601780:three_prime_UTR 35.0%
GTGAACTTCTCAATTTGGAT+GGG + chr4_2:44798696-44798715 Msa0601780:three_prime_UTR 35.0%
TCATCTTTACATAGGACCAC+GGG + chr4_2:44791303-44791322 Msa0601780:five_prime_UTR 40.0%
TCCCTCGTGTACAATTTGTA+AGG + chr4_2:44791444-44791463 Msa0601780:five_prime_UTR 40.0%
CTCCTTACAAATTGTACACG+AGG - chr4_2:44791449-44791468 None:intergenic 40.0%
CTGAAATAAAGAGATGGAGG+AGG + chr4_2:44791560-44791579 Msa0601780:exon 40.0%
!!! GTTTTTTGTGGTAGTAGTCC+TGG + chr4_2:44791621-44791640 Msa0601780:CDS 40.0%
!! TTGTAGGGTTGAGTTTTGTC+CGG - chr4_2:44791760-44791779 None:intergenic 40.0%
CATCAAGGAACACCAAACAA+AGG - chr4_2:44792015-44792034 None:intergenic 40.0%
!! ATTACGAACCTTTTGGTGGT+GGG + chr4_2:44792115-44792134 Msa0601780:intron 40.0%
CTCTAGTGCATATTAGTCAC+TGG - chr4_2:44792746-44792765 None:intergenic 40.0%
AGAATTTCGCTGACCACTTT+CGG + chr4_2:44792764-44792783 Msa0601780:intron 40.0%
TCTCAAGCTGTTTATGATGG+AGG + chr4_2:44793090-44793109 Msa0601780:CDS 40.0%
!! ATGATTTGTCTTGGTGGTGA+TGG + chr4_2:44793153-44793172 Msa0601780:intron 40.0%
AAATGTCACCGAAAGGAGAA+AGG - chr4_2:44793341-44793360 None:intergenic 40.0%
CTTTCGGTGACATTTCACAT+GGG + chr4_2:44793346-44793365 Msa0601780:three_prime_UTR 40.0%
AGGTGAAAATCTTCCCATGA+TGG + chr4_2:44793371-44793390 Msa0601780:three_prime_UTR 40.0%
!! AAAGAGAAGTGCTATGGTGT+GGG - chr4_2:44793453-44793472 None:intergenic 40.0%
!! GAGAAGAAAGAGAAGTGCTA+TGG - chr4_2:44793459-44793478 None:intergenic 40.0%
! GATGATGATGATGTTGGATG+GGG - chr4_2:44793501-44793520 None:intergenic 40.0%
!! GAGGTTGATGATGATGATGT+TGG - chr4_2:44793507-44793526 None:intergenic 40.0%
ACCTCAAACACCTAGAATGA+AGG + chr4_2:44793522-44793541 Msa0601780:three_prime_UTR 40.0%
ACCTTCATTCTAGGTGTTTG+AGG - chr4_2:44793526-44793545 None:intergenic 40.0%
!! TTGGTAGTGTTTGATGTTGC+TGG + chr4_2:44793725-44793744 Msa0601780:three_prime_UTR 40.0%
! TGGTAGTGTTTGATGTTGCT+GGG + chr4_2:44793726-44793745 Msa0601780:three_prime_UTR 40.0%
! GGGTAAAACTTTTCCACGAT+GGG - chr4_2:44793875-44793894 None:intergenic 40.0%
! AGGGTAAAACTTTTCCACGA+TGG - chr4_2:44793876-44793895 None:intergenic 40.0%
GGTTACATTTCACATGGGAA+AGG - chr4_2:44793896-44793915 None:intergenic 40.0%
AGATTGCCAGGTGTAATGAT+AGG - chr4_2:44794144-44794163 None:intergenic 40.0%
TATCATTACACCTGGCAATC+TGG + chr4_2:44794143-44794162 Msa0601780:three_prime_UTR 40.0%
ATCATTACACCTGGCAATCT+GGG + chr4_2:44794144-44794163 Msa0601780:three_prime_UTR 40.0%
!!! TTGGTGCCAATGTTTTTCGA+AGG + chr4_2:44794449-44794468 Msa0601780:three_prime_UTR 40.0%
!! CGAAGGAGACTAGTATTGAT+CGG + chr4_2:44794466-44794485 Msa0601780:three_prime_UTR 40.0%
GCATCAAAGAAAAGCTGAGA+TGG + chr4_2:44794936-44794955 Msa0601780:three_prime_UTR 40.0%
! GATGCTTTTATTGCCTTACC+AGG + chr4_2:44794970-44794989 Msa0601780:three_prime_UTR 40.0%
! CTTTTATTGCCTTACCAGGT+TGG + chr4_2:44794974-44794993 Msa0601780:intron 40.0%
GTAGGTCATATATTGAGGGA+CGG - chr4_2:44795028-44795047 None:intergenic 40.0%
TAATAGTGACCAGAGTGAGT+AGG - chr4_2:44795046-44795065 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4_2:44795170-44795189 Msa0601780:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4_2:44795171-44795190 Msa0601780:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4_2:44795275-44795294 None:intergenic 40.0%
!!! CGACACTCATTTTAAAACGG+AGG + chr4_2:44795517-44795536 Msa0601780:intron 40.0%
GTCAACTAGGTCATCTATTG+AGG + chr4_2:44795661-44795680 Msa0601780:intron 40.0%
AGATATGAACATACACCCTC+CGG + chr4_2:44796442-44796461 Msa0601780:intron 40.0%
!! TGTAGTGGATAGCAAAACAG+TGG + chr4_2:44796598-44796617 Msa0601780:intron 40.0%
AGACGTGCAAGAAACTCATA+AGG + chr4_2:44796760-44796779 Msa0601780:intron 40.0%
!! GTGGAAGATTAGTCTTGTCT+TGG + chr4_2:44796827-44796846 Msa0601780:intron 40.0%
GAATAATGCTAGACTGCTAG+AGG - chr4_2:44796875-44796894 None:intergenic 40.0%
! CCTTCCTCAGTTTCTTTTCT+CGG - chr4_2:44796948-44796967 None:intergenic 40.0%
CGAGAAAAGAAACTGAGGAA+GGG + chr4_2:44796946-44796965 Msa0601780:intron 40.0%
GTCCATTATATGCATGAAGG+TGG + chr4_2:44797411-44797430 Msa0601780:intron 40.0%
ACCCACCTTCATGCATATAA+TGG - chr4_2:44797416-44797435 None:intergenic 40.0%
TATATGCATGAAGGTGGGTA+TGG + chr4_2:44797417-44797436 Msa0601780:intron 40.0%
ATATGCATGAAGGTGGGTAT+GGG + chr4_2:44797418-44797437 Msa0601780:intron 40.0%
AGCTTCTTGAGGTCATAACT+TGG + chr4_2:44797451-44797470 Msa0601780:three_prime_UTR 40.0%
GCTTCTTGAGGTCATAACTT+GGG + chr4_2:44797452-44797471 Msa0601780:three_prime_UTR 40.0%
GCATCCATGATAAACCAGTA+AGG + chr4_2:44797484-44797503 Msa0601780:intron 40.0%
!! GGAACCTTACTGGTTTATCA+TGG - chr4_2:44797491-44797510 None:intergenic 40.0%
AAAAATGGCAAGATTGAGGG+AGG - chr4_2:44797512-44797531 None:intergenic 40.0%
GTGGGATTGTTGAATGTAGA+TGG + chr4_2:44797599-44797618 Msa0601780:three_prime_UTR 40.0%
TTTCATTGACAAAGCTGTGG+AGG + chr4_2:44797643-44797662 Msa0601780:three_prime_UTR 40.0%
! GACAAGCTCTTTTGTTGATG+GGG - chr4_2:44797711-44797730 None:intergenic 40.0%
! GGACAAGCTCTTTTGTTGAT+GGG - chr4_2:44797712-44797731 None:intergenic 40.0%
! TGGACAAGCTCTTTTGTTGA+TGG - chr4_2:44797713-44797732 None:intergenic 40.0%
! AAGTACGTACCTCCATCTTT+TGG - chr4_2:44797733-44797752 None:intergenic 40.0%
CATTAAAATGGACGCACGTT+TGG - chr4_2:44797816-44797835 None:intergenic 40.0%
TTCGTGCATGTTTGAATAGG+CGG - chr4_2:44798148-44798167 None:intergenic 40.0%
GATGCAACTCTTTCATGTTG+TGG - chr4_2:44798307-44798326 None:intergenic 40.0%
GAGTTGCATCTAAGCAAAGT+TGG + chr4_2:44798317-44798336 Msa0601780:three_prime_UTR 40.0%
TCTAAGCAAAGTTGGGAAAC+TGG + chr4_2:44798325-44798344 Msa0601780:three_prime_UTR 40.0%
CTAAGCAAAGTTGGGAAACT+GGG + chr4_2:44798326-44798345 Msa0601780:three_prime_UTR 40.0%
ACTTGAGATGTCACAATGTG+AGG - chr4_2:44798365-44798384 None:intergenic 40.0%
! CATTGTGACATCTCAAGTTG+TGG + chr4_2:44798367-44798386 Msa0601780:three_prime_UTR 40.0%
! GTTTAAGAGTTTGGTACTGG+GGG + chr4_2:44798602-44798621 Msa0601780:three_prime_UTR 40.0%
GGTGAACTTCTCAATTTGGA+TGG + chr4_2:44798695-44798714 Msa0601780:three_prime_UTR 40.0%
GGTCTCACCAAATCGAGTAT+TGG - chr4_2:44791272-44791291 None:intergenic 45.0%
AGAGAGAGATGAGAAGAGAG+AGG - chr4_2:44791702-44791721 None:intergenic 45.0%
AAGAATGGAGGGTGGACATT+AGG - chr4_2:44791889-44791908 None:intergenic 45.0%
TTTCCAAGAAGAATGGAGGG+TGG - chr4_2:44791897-44791916 None:intergenic 45.0%
! CATTACGAACCTTTTGGTGG+TGG + chr4_2:44792114-44792133 Msa0601780:intron 45.0%
!!! TTACGAACCTTTTGGTGGTG+GGG + chr4_2:44792116-44792135 Msa0601780:intron 45.0%
ATGGAGGTCGACATGTGATT+GGG + chr4_2:44793106-44793125 Msa0601780:CDS 45.0%
!! TGGTGGTGATGGTGTTATGT+TGG + chr4_2:44793164-44793183 Msa0601780:intron 45.0%
CCATGTGAAATGTCACCGAA+AGG - chr4_2:44793348-44793367 None:intergenic 45.0%
CCTTTCGGTGACATTTCACA+TGG + chr4_2:44793345-44793364 Msa0601780:three_prime_UTR 45.0%
GGTGACATTTCACATGGGAA+AGG + chr4_2:44793351-44793370 Msa0601780:three_prime_UTR 45.0%
!! GAAAGAGAAGTGCTATGGTG+TGG - chr4_2:44793454-44793473 None:intergenic 45.0%
AGTGTTTGATGTTGCTGGGA+AGG + chr4_2:44793730-44793749 Msa0601780:three_prime_UTR 45.0%
TCATTACACCTGGCAATCTG+GGG + chr4_2:44794145-44794164 Msa0601780:three_prime_UTR 45.0%
!! ATGCAGAGCTTTGAGAGAGA+GGG - chr4_2:44794190-44794209 None:intergenic 45.0%
!! TATGCAGAGCTTTGAGAGAG+AGG - chr4_2:44794191-44794210 None:intergenic 45.0%
CGATTCTTGGTCCTCATAAC+TGG + chr4_2:44794545-44794564 Msa0601780:three_prime_UTR 45.0%
! GATGTGAGGTACTACAAGTG+AGG - chr4_2:44794678-44794697 None:intergenic 45.0%
ATGATGAGGGCTTCAGAAGT+GGG - chr4_2:44794770-44794789 None:intergenic 45.0%
AATGATGAGGGCTTCAGAAG+TGG - chr4_2:44794771-44794790 None:intergenic 45.0%
TGTGAATGATTCGTGCTGCA+TGG - chr4_2:44794807-44794826 None:intergenic 45.0%
CGGAGCTAGTAGAATATTGG+TGG - chr4_2:44795008-44795027 None:intergenic 45.0%
GGACGGAGCTAGTAGAATAT+TGG - chr4_2:44795011-44795030 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4_2:44795276-44795295 None:intergenic 45.0%
GGCAACACTATTGTCCCATT+TGG + chr4_2:44795768-44795787 Msa0601780:intron 45.0%
TATCCTCCGAACGTAACAAG+TGG + chr4_2:44796407-44796426 Msa0601780:intron 45.0%
! TATCCACTTGTTACGTTCGG+AGG - chr4_2:44796413-44796432 None:intergenic 45.0%
! ATACTGACCAAAGGGTGTAG+TGG + chr4_2:44796583-44796602 Msa0601780:intron 45.0%
TTGCTATCCACTACACCCTT+TGG - chr4_2:44796593-44796612 None:intergenic 45.0%
! GGGGGCGCAATAAATATGAT+GGG - chr4_2:44796667-44796686 None:intergenic 45.0%
! AGGGGGCGCAATAAATATGA+TGG - chr4_2:44796668-44796687 None:intergenic 45.0%
GTAAATCCAATCGGCATAGG+GGG - chr4_2:44796685-44796704 None:intergenic 45.0%
GGTAAATCCAATCGGCATAG+GGG - chr4_2:44796686-44796705 None:intergenic 45.0%
GGGTAAATCCAATCGGCATA+GGG - chr4_2:44796687-44796706 None:intergenic 45.0%
! GGGCATTACGTTGCTTGTTA+GGG - chr4_2:44796854-44796873 None:intergenic 45.0%
! AGGGCATTACGTTGCTTGTT+AGG - chr4_2:44796855-44796874 None:intergenic 45.0%
CCGAGAAAAGAAACTGAGGA+AGG + chr4_2:44796945-44796964 Msa0601780:intron 45.0%
GTCATAACTTGGGCTCAACT+TGG + chr4_2:44797462-44797481 Msa0601780:three_prime_UTR 45.0%
ATTGACAAAGCTGTGGAGGA+AGG + chr4_2:44797647-44797666 Msa0601780:three_prime_UTR 45.0%
AGAGCTTGTCCAAAAGATGG+AGG + chr4_2:44797721-44797740 Msa0601780:three_prime_UTR 45.0%
TAGACCAACGCCAAACCAAA+CGG + chr4_2:44797894-44797913 Msa0601780:intron 45.0%
!! TAAATCTTTAATAAAATTTA+TGG + chr4_2:44792156-44792175 Msa0601780:intron 5.0%
!! AAATCTTTAATAAAATTTAT+GGG + chr4_2:44792157-44792176 Msa0601780:intron 5.0%
!! ATATATATATATTAATTTAG+AGG + chr4_2:44792644-44792663 Msa0601780:intron 5.0%
!!! TTTTTTTTTTTTTATAAAAG+AGG + chr4_2:44796102-44796121 Msa0601780:intron 5.0%
!!! TTTTTTTTTTTTATAAAAGA+GGG + chr4_2:44796103-44796122 Msa0601780:intron 5.0%
!!! CATTTAAATAATTATTTTTT+GGG + chr4_2:44796971-44796990 Msa0601780:intron 5.0%
!!! TTTTTTTAAAATAAAAACTA+AGG - chr4_2:44797257-44797276 None:intergenic 5.0%
TGTCCACCCTCCATTCTTCT+TGG + chr4_2:44791891-44791910 Msa0601780:intron 50.0%
AGAAGAACCCCACCACCAAA+AGG - chr4_2:44792126-44792145 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG - chr4_2:44792525-44792544 None:intergenic 50.0%
ATTTCGCTGACCACTTTCGG+TGG + chr4_2:44792767-44792786 Msa0601780:intron 50.0%
AGGAAAGATGCCACCGAAAG+TGG - chr4_2:44792780-44792799 None:intergenic 50.0%
GTTTATGGAGGAGGCAGCAT+TGG + chr4_2:44793051-44793070 Msa0601780:CDS 50.0%
!! AGGAGGCAGCATTGGTTTGA+TGG + chr4_2:44793059-44793078 Msa0601780:CDS 50.0%
!! GGAGGCAGCATTGGTTTGAT+GGG + chr4_2:44793060-44793079 Msa0601780:CDS 50.0%
!! GAGGCAGCATTGGTTTGATG+GGG + chr4_2:44793061-44793080 Msa0601780:CDS 50.0%
!! CAGCATTGGTTTGATGGGGT+TGG + chr4_2:44793065-44793084 Msa0601780:CDS 50.0%
GATGGAGGTCGACATGTGAT+TGG + chr4_2:44793105-44793124 Msa0601780:CDS 50.0%
TCTCTTGGCATCAGTGTCCT+TGG - chr4_2:44793244-44793263 None:intergenic 50.0%
AAGGACACTGATGCCAAGAG+AGG + chr4_2:44793243-44793262 Msa0601780:CDS 50.0%
ATGATGTTGGATGGGGACTG+GGG - chr4_2:44793494-44793513 None:intergenic 50.0%
GATGATGTTGGATGGGGACT+GGG - chr4_2:44793495-44793514 None:intergenic 50.0%
! TGATGATGTTGGATGGGGAC+TGG - chr4_2:44793496-44793515 None:intergenic 50.0%
ATGTTGCTGGGAAGGAGAGA+AGG + chr4_2:44793738-44793757 Msa0601780:three_prime_UTR 50.0%
!! GAGAGAAGGTTGGTGGAAGA+TGG + chr4_2:44793771-44793790 Msa0601780:three_prime_UTR 50.0%
! GTTCAACCACGGTCGATTCT+TGG + chr4_2:44794532-44794551 Msa0601780:three_prime_UTR 50.0%
! AGTGGGTTTGTGCAGATCAC+TGG + chr4_2:44794877-44794896 Msa0601780:three_prime_UTR 50.0%
CAGATCACTGGAGAGACAGT+GGG + chr4_2:44794889-44794908 Msa0601780:three_prime_UTR 50.0%
AGAGACAGTGGGAGAAGTGA+AGG + chr4_2:44794900-44794919 Msa0601780:three_prime_UTR 50.0%
GAATGGGAACCAACCTGGTA+AGG - chr4_2:44794986-44795005 None:intergenic 50.0%
CGGAGGGAGTAAGATGTTGT+TGG + chr4_2:44795534-44795553 Msa0601780:intron 50.0%
TACGTGTGTCGGAGTCAACT+AGG + chr4_2:44795648-44795667 Msa0601780:intron 50.0%
GTCATCTATTGAGGGACCGA+GGG + chr4_2:44795670-44795689 Msa0601780:intron 50.0%
GGGGTAAATCCAATCGGCAT+AGG - chr4_2:44796688-44796707 None:intergenic 50.0%
TCGGCCGAGAAAAGAAACTG+AGG + chr4_2:44796941-44796960 Msa0601780:intron 50.0%
GACACTTGAGGAGCTTCTTG+AGG + chr4_2:44797440-44797459 Msa0601780:three_prime_UTR 50.0%
GATTGAGGGAGGAACCTTAC+TGG - chr4_2:44797501-44797520 None:intergenic 50.0%
AGACCAACGCCAAACCAAAC+GGG + chr4_2:44797895-44797914 Msa0601780:intron 50.0%
!! TAACCCGTTTGGTTTGGCGT+TGG - chr4_2:44797901-44797920 None:intergenic 50.0%
AAGTTGGGAAACTGGGAAGC+TGG + chr4_2:44798333-44798352 Msa0601780:three_prime_UTR 50.0%
! TTTGGTACTGGGGGAGAAAC+TGG + chr4_2:44798611-44798630 Msa0601780:three_prime_UTR 50.0%
TGGGAAGGAGAGAAGGTTGC+TGG + chr4_2:44793745-44793764 Msa0601780:three_prime_UTR 55.0%
GGGAAGGAGAGAAGGTTGCT+GGG + chr4_2:44793746-44793765 Msa0601780:three_prime_UTR 55.0%
AAGGAGAGAAGGTTGCTGGG+AGG + chr4_2:44793749-44793768 Msa0601780:three_prime_UTR 55.0%
AAGGTTGCTGGGAGGAGAGA+AGG + chr4_2:44793757-44793776 Msa0601780:three_prime_UTR 55.0%
TTGCTGGGAGGAGAGAAGGT+TGG + chr4_2:44793761-44793780 Msa0601780:three_prime_UTR 55.0%
TGAGGACCAAGAATCGACCG+TGG - chr4_2:44794541-44794560 None:intergenic 55.0%
! GCTTCAGAAGTGGGCTCAAG+TGG - chr4_2:44794761-44794780 None:intergenic 55.0%
GCAGATCACTGGAGAGACAG+TGG + chr4_2:44794888-44794907 Msa0601780:three_prime_UTR 55.0%
GGAGAAGTGAAGGCAGTAGC+AGG + chr4_2:44794910-44794929 Msa0601780:three_prime_UTR 55.0%
TGGTGGAATGGGAACCAACC+TGG - chr4_2:44794991-44795010 None:intergenic 55.0%
GGTCATCTATTGAGGGACCG+AGG + chr4_2:44795669-44795688 Msa0601780:intron 55.0%
CGGCGACAACCTCAAACCTT+TGG - chr4_2:44796363-44796382 None:intergenic 55.0%
AGGTGGGTATGGGACACTTG+AGG + chr4_2:44797428-44797447 Msa0601780:intron 55.0%
CTGGGAGGAGAGAAGGTTGG+TGG + chr4_2:44793764-44793783 Msa0601780:three_prime_UTR 60.0%
!! CAGAAGTGCCCCAGATTGCC+AGG - chr4_2:44794156-44794175 None:intergenic 60.0%
ATTGCGCCCCCTATGCCGAT+TGG + chr4_2:44796676-44796695 Msa0601780:intron 60.0%
TGGGGACTGGGGAGCAACGA+GGG - chr4_2:44793483-44793502 None:intergenic 65.0%
ATGGGGACTGGGGAGCAACG+AGG - chr4_2:44793484-44793503 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 44791262 44798778 44791262 ID=Msa0601780;Name=Msa0601780
chr4_2 mRNA 44791262 44798778 44791262 ID=Msa0601780-mRNA-1;Parent=Msa0601780;Name=Msa0601780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=311|1|1|1|0.66|0.57|7|2388|86
chr4_2 exon 44791262 44791692 44791262 ID=Msa0601780-mRNA-1:exon:9956;Parent=Msa0601780-mRNA-1
chr4_2 exon 44793030 44793127 44793030 ID=Msa0601780-mRNA-1:exon:9957;Parent=Msa0601780-mRNA-1
chr4_2 exon 44793234 44793876 44793234 ID=Msa0601780-mRNA-1:exon:9958;Parent=Msa0601780-mRNA-1
chr4_2 exon 44793903 44794991 44793903 ID=Msa0601780-mRNA-1:exon:9959;Parent=Msa0601780-mRNA-1
chr4_2 exon 44797430 44797500 44797430 ID=Msa0601780-mRNA-1:exon:9960;Parent=Msa0601780-mRNA-1
chr4_2 exon 44797599 44797742 44797599 ID=Msa0601780-mRNA-1:exon:9961;Parent=Msa0601780-mRNA-1
chr4_2 exon 44798295 44798778 44798295 ID=Msa0601780-mRNA-1:exon:9962;Parent=Msa0601780-mRNA-1
chr4_2 five_prime_UTR 44791262 44791572 44791262 ID=Msa0601780-mRNA-1:five_prime_utr;Parent=Msa0601780-mRNA-1
chr4_2 CDS 44791573 44791692 44791573 ID=Msa0601780-mRNA-1:cds;Parent=Msa0601780-mRNA-1
chr4_2 CDS 44793030 44793127 44793030 ID=Msa0601780-mRNA-1:cds;Parent=Msa0601780-mRNA-1
chr4_2 CDS 44793234 44793276 44793234 ID=Msa0601780-mRNA-1:cds;Parent=Msa0601780-mRNA-1
chr4_2 three_prime_UTR 44793277 44793876 44793277 ID=Msa0601780-mRNA-1:three_prime_utr;Parent=Msa0601780-mRNA-1
chr4_2 three_prime_UTR 44793903 44794991 44793903 ID=Msa0601780-mRNA-1:three_prime_utr;Parent=Msa0601780-mRNA-1
chr4_2 three_prime_UTR 44797430 44797500 44797430 ID=Msa0601780-mRNA-1:three_prime_utr;Parent=Msa0601780-mRNA-1
chr4_2 three_prime_UTR 44797599 44797742 44797599 ID=Msa0601780-mRNA-1:three_prime_utr;Parent=Msa0601780-mRNA-1
chr4_2 three_prime_UTR 44798295 44798778 44798295 ID=Msa0601780-mRNA-1:three_prime_utr;Parent=Msa0601780-mRNA-1
Gene Sequence

>Msa0601780

ATGGAGGAGGAAAGTGAGATGAAAGAATCAAAGTTTAAGAGGATTTGTGTTTTTTGTGGTAGTAGTCCTGGTAACAAGAGTAGCTATAAAGATGCTGCTATTGAACTTGGAAATGAGTTGGTGTCAAGAAATATTGATTTGGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGGTTTCTCAAGCTGTTTATGATGGAGGTCGACATGTGATTGGGGTTATTCCAAGGACACTGATGCCAAGAGAGGTAATTTTATGA
Protein sequence

>Msa0601780

MEEESEMKESKFKRICVFCGSSPGNKSSYKDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPRTLMPREVIL*